RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8340
         (173 letters)



>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 1449

 Score = 29.0 bits (64), Expect = 0.35
 Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 5/90 (5%)

Query: 52  MQEKLAPKYIFKNPEYEQRKLSRRSTSSNLPTKQWKSLKQILSYEKNIPWPEDTIHYSSI 111
           +      +      E E R LS     +             L + +    PE  I     
Sbjct: 181 VGSWKKDRATGDADEPELRVLSTEEILNIFK-HISVKDFTSLGFNEVFSRPEWMILTCLP 239

Query: 112 VAPPSFKPSLKYSDISRFECNYKDPQTKLY 141
           V PP  +PS+ +++  R E    D  T   
Sbjct: 240 VPPPPVRPSISFNESQRGE----DDLTFKL 265


>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
           thermophilus [TaxId: 274]}
          Length = 1504

 Score = 27.1 bits (59), Expect = 1.6
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 4/96 (4%)

Query: 59  KYIFKNPEYEQRKLSRRSTSSNLPTKQWKSLKQILSYEKNIPWPEDTIHYSSIVAPPSFK 118
           K +      ++     +  S     K  K L+ + ++  +   PE  I  +  V PP  +
Sbjct: 465 KELDLEALEKELLEEMKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLR 524

Query: 119 PSLKYSDISRFECNYKDPQTKLYYYNIEEYKLIRKL 154
           P ++                 LY   I     ++KL
Sbjct: 525 PMVQVDGGRFAT----SDLNDLYRRLINRNNRLKKL 556


>d1wmga_ a.77.1.2 (A:) Netrin receptor UNC5B {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 90

 Score = 24.9 bits (54), Expect = 2.9
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 60  YIFKNPEYEQRKLSRRSTSSNLPTKQWKSLKQILSYEKNIPW 101
           Y FK P   ++K+     + N     W+ L Q LS ++ + +
Sbjct: 1   YAFKIPLSIRQKICSSLDAPNSRGNDWRLLAQKLSMDRYLNY 42


>d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic
          domain {Thermotoga maritima [TaxId: 2336]}
          Length = 169

 Score = 24.0 bits (51), Expect = 9.0
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 39 MSQSQEDINSQNQMQEKLAPKYIFKNPEYEQRKLSRRSTSSNLPTKQWKSLKQILSYEK 97
          M++S+  I    + Q++      FKN E   R L   S ++       K ++   S EK
Sbjct: 3  MNESERKI--VEEFQKET--GINFKNEELLFRALCHSSYANEQNQAGRKDVE---SNEK 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0523    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 656,446
Number of extensions: 29031
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 11
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.5 bits)