Query psy8342
Match_columns 225
No_of_seqs 307 out of 1568
Neff 9.0
Searched_HMMs 46136
Date Sat Aug 17 01:14:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8342.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8342hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08395 C2C_Munc13 C2 domain t 99.9 6.8E-21 1.5E-25 138.8 11.1 104 116-224 1-113 (120)
2 cd04028 C2B_RIM1alpha C2 domai 99.9 1.5E-20 3.2E-25 141.3 13.0 108 114-225 28-140 (146)
3 cd04016 C2_Tollip C2 domain pr 99.8 1E-20 2.2E-25 138.1 11.3 102 115-224 2-106 (121)
4 cd08682 C2_Rab11-FIP_classI C2 99.8 1.4E-20 3.1E-25 138.7 11.1 103 117-224 1-110 (126)
5 cd08381 C2B_PI3K_class_II C2 d 99.8 3.5E-20 7.6E-25 135.9 11.4 103 114-221 12-121 (122)
6 cd08677 C2A_Synaptotagmin-13 C 99.8 1.5E-20 3.3E-25 135.5 9.0 105 110-221 9-118 (118)
7 cd08393 C2A_SLP-1_2 C2 domain 99.8 2.9E-20 6.3E-25 136.9 10.6 106 113-222 13-125 (125)
8 cd08379 C2D_MCTP_PRT_plant C2 99.8 3.5E-20 7.5E-25 136.2 10.8 100 117-223 2-111 (126)
9 cd08389 C2A_Synaptotagmin-14_1 99.8 3.5E-20 7.7E-25 136.3 10.2 109 110-223 11-124 (124)
10 cd04029 C2A_SLP-4_5 C2 domain 99.8 1E-19 2.2E-24 134.1 11.6 108 111-222 11-125 (125)
11 cd08387 C2A_Synaptotagmin-8 C2 99.8 2.2E-19 4.7E-24 132.1 11.5 107 112-222 13-123 (124)
12 cd08385 C2A_Synaptotagmin-1-5- 99.8 2.4E-19 5.3E-24 131.7 11.7 108 111-222 12-123 (124)
13 cd04010 C2B_RasA3 C2 domain se 99.8 1.9E-19 4.2E-24 135.9 11.3 104 116-225 1-124 (148)
14 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 2.2E-19 4.7E-24 131.5 11.1 102 117-224 2-105 (121)
15 cd08394 C2A_Munc13 C2 domain f 99.8 2.4E-19 5.1E-24 130.6 10.7 101 114-223 1-101 (127)
16 cd08392 C2A_SLP-3 C2 domain fi 99.8 2.6E-19 5.7E-24 132.2 11.1 110 112-222 12-128 (128)
17 cd08386 C2A_Synaptotagmin-7 C2 99.8 3.1E-19 6.7E-24 131.3 11.4 109 111-223 12-125 (125)
18 cd08680 C2_Kibra C2 domain fou 99.8 1.9E-19 4.1E-24 132.1 9.8 109 110-221 9-124 (124)
19 KOG1030|consensus 99.8 1.1E-19 2.4E-24 136.3 8.5 93 113-208 4-97 (168)
20 cd04042 C2A_MCTP_PRT C2 domain 99.8 4.8E-19 1E-23 129.7 10.9 103 116-224 1-104 (121)
21 cd04022 C2A_MCTP_PRT_plant C2 99.8 4.6E-19 1E-23 130.9 10.7 103 116-224 1-109 (127)
22 cd04041 C2A_fungal C2 domain f 99.8 3.6E-19 7.8E-24 128.4 9.5 101 115-222 1-107 (111)
23 cd04036 C2_cPLA2 C2 domain pre 99.8 8.6E-19 1.9E-23 128.0 11.6 103 117-224 2-106 (119)
24 cd08376 C2B_MCTP_PRT C2 domain 99.8 8.2E-19 1.8E-23 127.4 11.3 101 117-224 2-104 (116)
25 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 9.4E-19 2E-23 128.5 11.7 102 116-224 1-104 (123)
26 cd08388 C2A_Synaptotagmin-4-11 99.8 6.7E-19 1.4E-23 130.2 10.4 110 112-223 13-128 (128)
27 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 1E-18 2.2E-23 129.9 11.3 109 116-224 1-116 (133)
28 cd08678 C2_C21orf25-like C2 do 99.8 1.2E-18 2.6E-23 128.5 10.8 101 117-224 1-102 (126)
29 cd04019 C2C_MCTP_PRT_plant C2 99.8 2E-18 4.3E-23 130.9 11.8 106 116-224 1-109 (150)
30 cd08685 C2_RGS-like C2 domain 99.8 1.2E-18 2.6E-23 127.2 10.1 104 113-221 10-119 (119)
31 cd04031 C2A_RIM1alpha C2 domai 99.8 2.6E-18 5.6E-23 126.3 12.0 106 112-222 13-125 (125)
32 cd08390 C2A_Synaptotagmin-15-1 99.8 1.4E-18 3E-23 127.4 10.5 109 111-223 10-123 (123)
33 cd04030 C2C_KIAA1228 C2 domain 99.8 2.2E-18 4.8E-23 127.1 11.5 108 111-222 12-127 (127)
34 cd08521 C2A_SLP C2 domain firs 99.8 2.7E-18 5.8E-23 125.9 10.9 107 111-221 10-123 (123)
35 cd08688 C2_KIAA0528-like C2 do 99.8 2.5E-18 5.5E-23 123.8 10.4 102 117-222 1-108 (110)
36 cd08681 C2_fungal_Inn1p-like C 99.8 3.6E-18 7.9E-23 124.4 11.2 102 115-224 1-105 (118)
37 cd04024 C2A_Synaptotagmin-like 99.8 3.2E-18 7E-23 126.3 11.0 106 115-224 1-110 (128)
38 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 4E-18 8.7E-23 124.8 11.1 104 116-224 1-105 (121)
39 cd08377 C2C_MCTP_PRT C2 domain 99.8 7.7E-18 1.7E-22 122.7 11.7 101 115-224 1-102 (119)
40 cd04049 C2_putative_Elicitor-r 99.8 5.6E-18 1.2E-22 124.5 10.8 104 115-225 1-110 (124)
41 cd04027 C2B_Munc13 C2 domain s 99.8 7.8E-18 1.7E-22 124.3 11.4 101 116-225 2-114 (127)
42 cd04050 C2B_Synaptotagmin-like 99.8 5.3E-18 1.2E-22 121.1 10.0 101 116-224 1-103 (105)
43 cd08378 C2B_MCTP_PRT_plant C2 99.8 9.8E-18 2.1E-22 122.7 11.1 102 117-225 2-105 (121)
44 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.4E-17 2.9E-22 122.9 11.3 101 115-224 4-105 (126)
45 cd08375 C2_Intersectin C2 doma 99.8 1.6E-17 3.5E-22 124.0 11.7 111 109-222 9-122 (136)
46 cd08382 C2_Smurf-like C2 domai 99.7 2.1E-17 4.5E-22 121.4 11.6 103 116-224 1-106 (123)
47 cd08675 C2B_RasGAP C2 domain s 99.7 2E-17 4.3E-22 123.7 11.1 104 117-225 1-122 (137)
48 cd04015 C2_plant_PLD C2 domain 99.7 2.5E-17 5.4E-22 126.0 11.7 103 114-223 6-139 (158)
49 cd04039 C2_PSD C2 domain prese 99.7 1.5E-17 3.3E-22 119.2 9.7 94 115-211 1-101 (108)
50 cd04043 C2_Munc13_fungal C2 do 99.7 4.1E-17 9E-22 120.1 11.8 107 116-224 2-111 (126)
51 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 6.4E-17 1.4E-21 124.2 12.0 110 110-223 22-138 (162)
52 cd04045 C2C_Tricalbin-like C2 99.7 4.8E-17 1E-21 118.9 10.8 102 115-223 1-103 (120)
53 cd08391 C2A_C2C_Synaptotagmin_ 99.7 4.7E-17 1E-21 118.8 10.6 101 115-223 1-109 (121)
54 KOG0696|consensus 99.7 2.9E-18 6.2E-23 145.1 4.5 104 114-222 179-287 (683)
55 cd08407 C2B_Synaptotagmin-13 C 99.7 6E-17 1.3E-21 120.9 10.6 94 111-204 11-112 (138)
56 cd04014 C2_PKC_epsilon C2 doma 99.7 7.5E-17 1.6E-21 119.8 10.9 106 114-224 3-119 (132)
57 cd04046 C2_Calpain C2 domain p 99.7 1E-16 2.2E-21 118.1 11.5 100 114-223 2-102 (126)
58 cd04018 C2C_Ferlin C2 domain t 99.7 8E-17 1.7E-21 121.9 10.8 104 116-222 1-124 (151)
59 cd04011 C2B_Ferlin C2 domain s 99.7 8.1E-17 1.7E-21 116.1 9.8 101 114-222 3-109 (111)
60 cd08406 C2B_Synaptotagmin-12 C 99.7 3.5E-17 7.6E-22 122.0 8.0 96 111-206 11-112 (136)
61 KOG2059|consensus 99.7 5.4E-17 1.2E-21 143.8 10.2 206 4-224 2-254 (800)
62 cd08676 C2A_Munc13-like C2 dom 99.7 1.5E-16 3.2E-21 120.6 11.1 104 109-221 22-153 (153)
63 cd08404 C2B_Synaptotagmin-4 C2 99.7 4.7E-17 1E-21 121.5 8.1 103 113-221 13-121 (136)
64 cd04040 C2D_Tricalbin-like C2 99.7 2.1E-16 4.5E-21 114.5 11.1 103 117-225 1-105 (115)
65 cd04017 C2D_Ferlin C2 domain f 99.7 2.2E-16 4.8E-21 117.8 11.4 106 115-224 1-118 (135)
66 cd04051 C2_SRC2_like C2 domain 99.7 1.7E-16 3.8E-21 116.7 10.6 107 116-224 1-115 (125)
67 cd04009 C2B_Munc13-like C2 dom 99.7 1.5E-16 3.2E-21 118.4 10.1 96 113-208 14-119 (133)
68 cd08692 C2B_Tac2-N C2 domain s 99.7 3E-16 6.6E-21 115.8 11.2 97 110-206 9-111 (135)
69 cd08384 C2B_Rabphilin_Doc2 C2 99.7 1E-16 2.2E-21 119.2 8.8 106 111-222 9-120 (133)
70 cd04038 C2_ArfGAP C2 domain pr 99.7 1.8E-16 3.9E-21 119.3 10.1 90 115-208 2-92 (145)
71 cd04032 C2_Perforin C2 domain 99.7 4.9E-16 1.1E-20 114.3 11.7 95 109-207 22-119 (127)
72 cd08405 C2B_Synaptotagmin-7 C2 99.7 4.6E-16 9.9E-21 116.2 11.5 94 112-205 12-111 (136)
73 cd08402 C2B_Synaptotagmin-1 C2 99.7 8.3E-17 1.8E-21 120.2 6.8 95 111-205 11-111 (136)
74 cd08408 C2B_Synaptotagmin-14_1 99.7 7.3E-17 1.6E-21 120.7 6.2 97 110-206 10-113 (138)
75 cd08410 C2B_Synaptotagmin-17 C 99.7 1.1E-16 2.5E-21 119.3 7.0 106 112-222 11-122 (135)
76 cd08691 C2_NEDL1-like C2 domai 99.7 1E-15 2.3E-20 114.1 11.4 106 117-225 3-123 (137)
77 cd04048 C2A_Copine C2 domain f 99.7 4.4E-16 9.5E-21 113.8 9.2 101 120-224 5-115 (120)
78 cd04026 C2_PKC_alpha_gamma C2 99.7 8.8E-16 1.9E-20 113.9 10.6 104 115-223 13-121 (131)
79 cd08403 C2B_Synaptotagmin-3-5- 99.7 2.5E-16 5.3E-21 117.3 7.2 94 112-205 11-110 (134)
80 cd08373 C2A_Ferlin C2 domain f 99.7 1.2E-15 2.5E-20 112.6 10.6 95 121-224 2-100 (127)
81 cd04037 C2E_Ferlin C2 domain f 99.6 1.5E-15 3.3E-20 111.6 10.3 90 117-207 2-93 (124)
82 cd04044 C2A_Tricalbin-like C2 99.6 1.7E-15 3.6E-20 111.1 10.2 95 115-210 2-98 (124)
83 KOG1028|consensus 99.6 9.8E-16 2.1E-20 133.9 10.0 113 109-225 161-277 (421)
84 cd08409 C2B_Synaptotagmin-15 C 99.6 4.2E-16 9.2E-21 116.5 6.3 96 112-208 12-113 (137)
85 cd04013 C2_SynGAP_like C2 doma 99.6 1.9E-15 4.1E-20 113.4 9.6 102 113-224 9-114 (146)
86 cd08690 C2_Freud-1 C2 domain f 99.6 4.9E-15 1.1E-19 112.3 11.8 102 117-222 4-120 (155)
87 cd00276 C2B_Synaptotagmin C2 d 99.6 5.9E-16 1.3E-20 115.0 6.5 105 113-223 12-122 (134)
88 cd04035 C2A_Rabphilin_Doc2 C2 99.6 1.5E-14 3.3E-19 106.0 11.4 96 113-209 13-115 (123)
89 cd04021 C2_E3_ubiquitin_ligase 99.6 3.7E-14 8E-19 104.4 11.3 103 115-222 2-107 (125)
90 cd08383 C2A_RasGAP C2 domain ( 99.6 2.4E-14 5.1E-19 103.9 10.0 96 117-224 2-101 (117)
91 cd08686 C2_ABR C2 domain in th 99.6 2.2E-14 4.7E-19 103.3 9.5 83 117-204 1-92 (118)
92 cd00275 C2_PLC_like C2 domain 99.6 4.3E-14 9.3E-19 104.1 10.9 101 115-223 2-110 (128)
93 cd04047 C2B_Copine C2 domain s 99.5 2.9E-14 6.4E-19 102.4 9.0 90 118-208 3-101 (110)
94 PLN03008 Phospholipase D delta 99.5 5.4E-14 1.2E-18 128.8 9.4 81 136-223 78-158 (868)
95 PLN03200 cellulose synthase-in 99.5 1E-13 2.3E-18 137.2 9.2 105 111-223 1976-2082(2102)
96 PF00168 C2: C2 domain; Inter 99.5 3.6E-13 7.9E-18 91.4 8.0 83 117-199 1-85 (85)
97 KOG1011|consensus 99.5 8.2E-14 1.8E-18 123.0 6.0 106 111-225 291-408 (1283)
98 cd04052 C2B_Tricalbin-like C2 99.4 4.1E-13 8.9E-18 96.7 7.7 84 133-222 10-95 (111)
99 cd08374 C2F_Ferlin C2 domain s 99.4 4.8E-12 1E-16 93.5 10.1 95 116-210 1-126 (133)
100 cd00030 C2 C2 domain. The C2 d 99.3 1.8E-11 3.9E-16 84.7 10.5 99 117-221 1-102 (102)
101 smart00239 C2 Protein kinase C 99.3 2E-11 4.3E-16 84.9 10.5 95 116-210 1-97 (101)
102 PLN02223 phosphoinositide phos 99.3 4.1E-11 8.9E-16 106.0 12.0 103 114-223 408-519 (537)
103 KOG1028|consensus 99.3 1.9E-11 4.2E-16 107.0 8.9 95 110-204 293-393 (421)
104 PLN02952 phosphoinositide phos 99.2 1.4E-10 2.9E-15 104.5 12.8 103 114-223 469-581 (599)
105 KOG2059|consensus 99.2 3.1E-11 6.8E-16 107.7 7.2 102 115-223 5-107 (800)
106 KOG1264|consensus 99.2 1.6E-10 3.5E-15 104.6 9.8 130 73-208 1028-1163(1267)
107 KOG0169|consensus 99.1 2.2E-10 4.8E-15 103.5 9.3 93 116-208 617-718 (746)
108 PLN02230 phosphoinositide phos 99.1 5.7E-10 1.2E-14 100.4 11.1 96 113-208 467-572 (598)
109 PLN02222 phosphoinositide phos 99.1 1.3E-09 2.7E-14 98.1 13.0 95 114-208 451-555 (581)
110 COG5038 Ca2+-dependent lipid-b 99.1 3.2E-10 6.9E-15 106.3 8.6 100 109-210 1034-1135(1227)
111 KOG1328|consensus 99.0 1.4E-10 3E-15 104.0 1.3 112 109-225 108-285 (1103)
112 PLN02228 Phosphoinositide phos 99.0 6.6E-09 1.4E-13 93.2 11.6 95 114-208 430-535 (567)
113 KOG1328|consensus 98.9 4E-10 8.8E-15 101.0 2.3 96 111-206 943-1048(1103)
114 PLN02270 phospholipase D alpha 98.9 7E-09 1.5E-13 95.6 9.1 103 113-222 6-128 (808)
115 COG5038 Ca2+-dependent lipid-b 98.9 6.6E-09 1.4E-13 97.7 8.3 97 110-208 431-530 (1227)
116 KOG1031|consensus 98.8 7.2E-09 1.6E-13 91.3 5.0 106 114-222 2-119 (1169)
117 KOG0905|consensus 98.7 1.5E-08 3.3E-13 95.1 5.1 109 113-225 1522-1637(1639)
118 cd08689 C2_fungal_Pkc1p C2 dom 98.6 1.8E-07 3.9E-12 65.6 6.6 85 117-208 1-89 (109)
119 KOG2060|consensus 98.6 4.8E-08 1E-12 82.1 3.7 113 109-225 263-381 (405)
120 PF00397 WW: WW domain; Inter 98.5 6.1E-08 1.3E-12 53.1 2.6 30 68-97 1-31 (31)
121 cd08684 C2A_Tac2-N C2 domain f 98.4 2.1E-07 4.5E-12 62.8 3.3 89 119-209 3-96 (103)
122 KOG1011|consensus 98.4 1.3E-06 2.8E-11 78.3 8.3 106 115-224 1125-1238(1283)
123 smart00456 WW Domain with 2 co 98.3 4.9E-07 1.1E-11 49.9 3.0 31 68-98 1-31 (32)
124 KOG1326|consensus 98.3 3.9E-07 8.4E-12 84.7 3.2 92 112-204 610-703 (1105)
125 PLN02352 phospholipase D epsil 98.2 7.4E-06 1.6E-10 75.8 8.8 99 110-222 5-111 (758)
126 KOG1013|consensus 98.1 6.4E-06 1.4E-10 68.4 5.5 94 110-203 228-327 (362)
127 cd00201 WW Two conserved trypt 98.0 4.3E-06 9.3E-11 45.6 2.8 30 69-98 1-30 (31)
128 cd08683 C2_C2cd3 C2 domain fou 98.0 1.6E-05 3.5E-10 57.7 6.4 101 117-221 1-143 (143)
129 KOG1013|consensus 98.0 8.3E-07 1.8E-11 73.6 -1.1 102 109-210 87-195 (362)
130 PLN02964 phosphatidylserine de 97.8 3.5E-05 7.6E-10 70.7 5.3 90 111-208 50-140 (644)
131 KOG3259|consensus 97.6 2.5E-05 5.4E-10 57.4 1.4 36 66-101 5-41 (163)
132 KOG1265|consensus 97.5 0.0002 4.4E-09 66.5 6.3 91 114-208 702-797 (1189)
133 KOG1891|consensus 97.5 7.5E-05 1.6E-09 58.7 2.8 35 66-100 127-161 (271)
134 KOG1326|consensus 97.3 7.3E-05 1.6E-09 70.1 1.2 102 113-222 204-316 (1105)
135 KOG1891|consensus 97.3 0.00016 3.5E-09 56.9 2.4 39 65-103 91-129 (271)
136 KOG1327|consensus 97.2 0.00076 1.7E-08 60.1 5.8 86 121-207 142-236 (529)
137 cd08398 C2_PI3K_class_I_alpha 97.0 0.0065 1.4E-07 46.3 8.5 92 114-206 7-107 (158)
138 PF12416 DUF3668: Cep120 prote 96.9 0.0064 1.4E-07 52.0 8.6 99 117-222 2-112 (340)
139 cd08693 C2_PI3K_class_I_beta_d 96.7 0.012 2.7E-07 45.5 8.4 93 114-206 7-121 (173)
140 KOG3837|consensus 96.7 0.0026 5.6E-08 54.8 4.6 96 114-211 366-479 (523)
141 cd08380 C2_PI3K_like C2 domain 96.7 0.015 3.1E-07 44.2 8.3 92 115-206 8-108 (156)
142 cd08399 C2_PI3K_class_I_gamma 96.0 0.071 1.5E-06 41.4 8.9 91 115-206 10-123 (178)
143 PF00792 PI3K_C2: Phosphoinosi 95.9 0.053 1.2E-06 40.4 7.5 67 140-206 9-86 (142)
144 cd08397 C2_PI3K_class_III C2 d 95.8 0.042 9.2E-07 41.9 6.7 54 152-205 50-107 (159)
145 cd04012 C2A_PI3K_class_II C2 d 95.2 0.1 2.3E-06 40.2 7.2 93 114-206 7-120 (171)
146 PF15627 CEP76-C2: CEP76 C2 do 94.8 0.27 5.8E-06 37.3 8.3 92 113-207 7-117 (156)
147 KOG3209|consensus 94.8 0.021 4.5E-07 52.5 2.6 37 63-99 218-254 (984)
148 KOG1452|consensus 94.8 0.13 2.8E-06 43.2 6.9 93 111-206 47-142 (442)
149 cd08695 C2_Dock-B C2 domains f 94.5 0.13 2.8E-06 40.3 6.1 61 143-203 47-112 (189)
150 PF10358 NT-C2: N-terminal C2 94.2 0.74 1.6E-05 34.0 9.6 93 113-208 5-107 (143)
151 PF14429 DOCK-C2: C2 domain in 94.0 0.31 6.6E-06 38.0 7.4 56 149-204 59-120 (184)
152 PF15625 CC2D2AN-C2: CC2D2A N- 93.3 0.71 1.5E-05 35.5 8.2 83 136-221 38-122 (168)
153 cd08694 C2_Dock-A C2 domains f 93.2 0.39 8.4E-06 37.8 6.6 58 146-203 50-114 (196)
154 cd08679 C2_DOCK180_related C2 87.5 1.6 3.5E-05 33.8 5.5 52 153-204 56-115 (178)
155 KOG1327|consensus 87.3 0.63 1.4E-05 42.0 3.4 59 150-208 42-105 (529)
156 KOG3209|consensus 87.0 0.61 1.3E-05 43.4 3.2 71 29-101 226-302 (984)
157 smart00142 PI3K_C2 Phosphoinos 86.4 4.6 9.9E-05 28.1 6.8 36 152-187 52-91 (100)
158 COG5104 PRP40 Splicing factor 86.2 0.2 4.3E-06 43.8 -0.3 74 26-103 13-89 (590)
159 cd08696 C2_Dock-C C2 domains f 84.6 2.8 6.2E-05 32.6 5.5 56 149-204 54-118 (179)
160 KOG0940|consensus 83.5 1.3 2.9E-05 38.3 3.5 81 17-100 53-146 (358)
161 cd08687 C2_PKN-like C2 domain 82.8 2.9 6.3E-05 28.7 4.2 43 160-206 31-73 (98)
162 cd08697 C2_Dock-D C2 domains f 81.7 7.4 0.00016 30.4 6.8 55 150-204 57-123 (185)
163 COG5104 PRP40 Splicing factor 78.3 0.83 1.8E-05 40.1 0.5 31 68-98 13-43 (590)
164 PF11618 DUF3250: Protein of u 71.5 7.2 0.00016 27.6 3.8 57 150-208 12-76 (107)
165 KOG0940|consensus 68.4 7.3 0.00016 33.8 3.9 36 65-100 58-97 (358)
166 KOG4334|consensus 59.4 12 0.00027 33.5 3.7 34 65-98 152-185 (650)
167 KOG0904|consensus 56.2 21 0.00046 34.5 4.8 72 115-186 343-421 (1076)
168 KOG0694|consensus 55.9 2.7 5.9E-05 39.1 -0.9 54 152-206 43-96 (694)
169 PF07162 B9-C2: Ciliary basal 53.0 1E+02 0.0022 23.5 7.6 43 160-202 55-101 (168)
170 KOG1329|consensus 52.9 14 0.0003 35.6 3.2 67 151-221 152-219 (887)
171 KOG3552|consensus 49.5 3.4 7.3E-05 39.9 -1.4 34 65-98 17-50 (1298)
172 KOG4027|consensus 37.2 1.9E+02 0.0041 22.2 6.4 46 158-203 59-109 (187)
173 smart00391 MBD Methyl-CpG bind 35.6 45 0.00098 22.0 2.7 22 65-86 5-34 (77)
174 PF01060 DUF290: Transthyretin 34.2 66 0.0014 21.1 3.4 24 178-201 13-36 (80)
175 KOG4286|consensus 31.4 14 0.00031 35.0 -0.3 29 72-100 354-382 (966)
176 TIGR02914 EpsI_fam EpsI family 31.0 92 0.002 23.7 4.2 36 8-45 43-78 (174)
177 KOG0906|consensus 29.3 56 0.0012 30.8 3.0 42 163-204 78-123 (843)
178 PF08151 FerI: FerI (NUC094) d 27.3 1.2E+02 0.0026 19.8 3.6 20 2-21 28-47 (72)
179 PF03621 MbtH: MbtH-like prote 23.9 1.1E+02 0.0023 18.8 2.7 28 38-77 12-41 (54)
No 1
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.85 E-value=6.8e-21 Score=138.78 Aligned_cols=104 Identities=20% Similarity=0.281 Sum_probs=86.7
Q ss_pred ceeEeeeeeecCCcCCCCCC-eeEEEEeC-C---CCccCcccCceecCCCCCeeccEEEEEecCCC----cEEEEEEEEc
Q psy8342 116 QIRLRIIAGHSLAKKDIFGA-RIDLNTVN-G---DQTIDSALTKTRKKTLNPVWNEEFIFRVKPSE----HKLVFQVFDM 186 (225)
Q Consensus 116 ~l~v~vi~a~~L~~~d~~g~-~~~~~~~~-~---~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~----~~L~v~V~d~ 186 (225)
+|.|.|++|++|+..+. |. ++|+.+.. | ....++++|+++++++||+|||+|.|.+...+ ..|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d~-g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQTT-GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCcccC-CCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 48899999999998874 66 77776653 3 23334678999999999999999999997532 5689999999
Q ss_pred cCCCCCceeEEEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 187 NRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 187 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
|.++++++||++.++|.++..+... ..|++|+++
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~----~~w~~L~~~ 113 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSC----ACWLPLGRR 113 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcE----EEEEECcCc
Confidence 9888899999999999999977654 899999986
No 2
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.85 E-value=1.5e-20 Score=141.30 Aligned_cols=108 Identities=24% Similarity=0.375 Sum_probs=90.3
Q ss_pred ccceeEeeeeeecCCcCC-CCCC-eeEEEEeC--CCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEE-EccC
Q psy8342 114 TEQIRLRIIAGHSLAKKD-IFGA-RIDLNTVN--GDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVF-DMNR 188 (225)
Q Consensus 114 ~~~l~v~vi~a~~L~~~d-~~g~-~~~~~~~~--~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~-d~d~ 188 (225)
.+.|.|.|++|+||+.++ ..|. ++|+.+.. +.....+.||+++++++||+|||+|.|.+...+..|.|+|| |++.
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~ 107 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR 107 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence 578999999999999874 4555 66665544 33334578999999999999999999999866789999999 6888
Q ss_pred CCCCceeEEEEEECcccCCCCCCccccCeeEEcccCC
Q psy8342 189 LTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRPRR 225 (225)
Q Consensus 189 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~prs 225 (225)
+++++|||++.|+|+++..+... ..||.|.|.+
T Consensus 108 ~~~~~~iG~~~i~L~~l~~~~~~----~~Wy~L~~~~ 140 (146)
T cd04028 108 MDKKVFMGVAQILLDDLDLSNLV----IGWYKLFPTS 140 (146)
T ss_pred CCCCceEEEEEEEcccccCCCCc----eeEEecCCcc
Confidence 88999999999999999766554 7999999864
No 3
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.85 E-value=1e-20 Score=138.12 Aligned_cols=102 Identities=13% Similarity=0.209 Sum_probs=88.3
Q ss_pred cceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecC-CCCCeeccEEEEEecCCCcEEEEEEEEccCCCCC
Q psy8342 115 EQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKK-TLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRD 192 (225)
Q Consensus 115 ~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~-~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d 192 (225)
|.|.|+|++|++++..+ .|+ ++|+.+..+.. +++|+++.+ +.||+|||+|.|.+......|.|+|||+|.+++|
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~---~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~d 77 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHA---VYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMD 77 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCE---EEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCC
Confidence 68999999999988777 566 99998888754 578999875 8999999999999987667899999999999999
Q ss_pred ceeEEEEEECc-ccCCCCCCccccCeeEEcccC
Q psy8342 193 DFLGMVELSLL-NLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 193 ~~lG~~~i~l~-~l~~~~~~~~~~~~w~~L~pr 224 (225)
++||.+.++|. .+..+... +.||+|.++
T Consensus 78 d~iG~~~i~l~~~~~~g~~~----~~W~~L~~~ 106 (121)
T cd04016 78 ERIAWTHITIPESVFNGETL----DDWYSLSGK 106 (121)
T ss_pred ceEEEEEEECchhccCCCCc----cccEeCcCc
Confidence 99999999996 57766554 899999874
No 4
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.84 E-value=1.4e-20 Score=138.75 Aligned_cols=103 Identities=24% Similarity=0.389 Sum_probs=87.0
Q ss_pred eeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecC------CCcEEEEEEEEccCC
Q psy8342 117 IRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKP------SEHKLVFQVFDMNRL 189 (225)
Q Consensus 117 l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~------~~~~L~v~V~d~d~~ 189 (225)
++|+|++|+||+.++..|. ++|+.+..+.. +++|+++++++||+|||+|.|.+.. ....|.|.|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~---~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKE---KYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCe---eeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 5799999999999988777 88888877643 6799999999999999999999976 357899999999999
Q ss_pred CCCceeEEEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 190 TRDDFLGMVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 190 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
++|++||++.|+|+++...... ....||+|+++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~--~~~~W~~L~~~ 110 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGR--RRTRWFKLESK 110 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCC--cccEEEECcCC
Confidence 9999999999999998732211 12899999863
No 5
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.84 E-value=3.5e-20 Score=135.92 Aligned_cols=103 Identities=23% Similarity=0.295 Sum_probs=86.9
Q ss_pred ccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCC--ccCcccCceecCCCCCeeccEEEEEecC----CCcEEEEEEEEc
Q psy8342 114 TEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQ--TIDSALTKTRKKTLNPVWNEEFIFRVKP----SEHKLVFQVFDM 186 (225)
Q Consensus 114 ~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~--~~~~~kT~v~~~~~~P~Wne~f~f~v~~----~~~~L~v~V~d~ 186 (225)
.+.|.|.|++|++|+.++ .|. ++|+.+..... ...+++|+++++++||+|||+|.|.+.+ ....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 578999999999999999 666 77776655432 2346899999999999999999999822 247899999999
Q ss_pred cCCCCCceeEEEEEECcccCCCCCCccccCeeEEc
Q psy8342 187 NRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYIL 221 (225)
Q Consensus 187 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L 221 (225)
+.+++++|||++.|+|.++...... ..||.|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~----~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQET----EKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCc----cceEEC
Confidence 9999999999999999999876544 899998
No 6
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.84 E-value=1.5e-20 Score=135.54 Aligned_cols=105 Identities=16% Similarity=0.264 Sum_probs=85.2
Q ss_pred CCCCccceeEeeeeeecCCcCCCCCC-eeEEEEeCCC-CccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEEE
Q psy8342 110 PEEPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGD-QTIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVF 184 (225)
Q Consensus 110 ~~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~-~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~ 184 (225)
.....+.|.|+|++|++|+ . .|. ++|+.+.... .+..+.+|+++++++||+|||+|.|.+... ...|.|+||
T Consensus 9 Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~ 85 (118)
T cd08677 9 YDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLR 85 (118)
T ss_pred EcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEE
Confidence 3456799999999999998 2 244 7777665542 344578999999999999999999999864 378999999
Q ss_pred EccCCCCCceeEEEEEECcccCCCCCCccccCeeEEc
Q psy8342 185 DMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYIL 221 (225)
Q Consensus 185 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L 221 (225)
|+|+++++++||++.++++++..+.+. ..|-.|
T Consensus 86 d~Drfs~~d~IG~v~l~l~~~~~~~~~----~~W~~~ 118 (118)
T cd08677 86 CCDRFSRHSTLGELRLKLADVSMMLGA----AQWVDL 118 (118)
T ss_pred eCCCCCCCceEEEEEEccccccCCccc----cchhcC
Confidence 999999999999999999987655444 677654
No 7
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.83 E-value=2.9e-20 Score=136.94 Aligned_cols=106 Identities=26% Similarity=0.339 Sum_probs=87.7
Q ss_pred CccceeEeeeeeecCCcCCCC-CC-eeEEEEeCC--CCccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q psy8342 113 PTEQIRLRIIAGHSLAKKDIF-GA-RIDLNTVNG--DQTIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVFD 185 (225)
Q Consensus 113 ~~~~l~v~vi~a~~L~~~d~~-g~-~~~~~~~~~--~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~d 185 (225)
..+.|.|+|++|+||+.++.. |. ++|+.+... .....+++|+++++++||+|||+|.|.+... ...|.|+|||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d 92 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWH 92 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEe
Confidence 457899999999999999875 55 666655443 2223468999999999999999999998743 3689999999
Q ss_pred ccCCCCCceeEEEEEECcccCCCCCCccccCeeEEcc
Q psy8342 186 MNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILR 222 (225)
Q Consensus 186 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 222 (225)
++.++++++||++.|+|.++...... ..||.|+
T Consensus 93 ~~~~~~~~~iG~~~i~L~~~~~~~~~----~~W~~L~ 125 (125)
T cd08393 93 RDSLGRNSFLGEVEVDLGSWDWSNTQ----PTWYPLQ 125 (125)
T ss_pred CCCCCCCcEeEEEEEecCccccCCCC----cceEECc
Confidence 99999999999999999999766444 8999985
No 8
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.83 E-value=3.5e-20 Score=136.17 Aligned_cols=100 Identities=25% Similarity=0.339 Sum_probs=89.1
Q ss_pred eeEeeeeeec---CCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEccCCC--
Q psy8342 117 IRLRIIAGHS---LAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLT-- 190 (225)
Q Consensus 117 l~v~vi~a~~---L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~-- 190 (225)
|.|+|++|++ |..+|..|. ++|+.+..+.. +.+|+++++++||+|||+|.|.+......|.|+|||++.++
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~---~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPK---WVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWK 78 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCE---EeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccc
Confidence 7899999999 888888888 99999888754 57899999999999999999999877779999999999874
Q ss_pred ----CCceeEEEEEECcccCCCCCCccccCeeEEccc
Q psy8342 191 ----RDDFLGMVELSLLNLPRESDGCVIHNKKYILRP 223 (225)
Q Consensus 191 ----~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~p 223 (225)
+|++||++.|+|..+..+... ..||+|+.
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~----~~~~~L~~ 111 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVY----AHSYPLLS 111 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEE----eeEEEeEe
Confidence 899999999999999877554 89999984
No 9
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.83 E-value=3.5e-20 Score=136.28 Aligned_cols=109 Identities=25% Similarity=0.416 Sum_probs=89.8
Q ss_pred CCCCccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEE-ecCC---CcEEEEEEE
Q psy8342 110 PEEPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFR-VKPS---EHKLVFQVF 184 (225)
Q Consensus 110 ~~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~-v~~~---~~~L~v~V~ 184 (225)
.....++|.|+|++|+||+..+..|. ++|+.+........+.+|+++++ +||+|||+|.|. +... +..|.|.||
T Consensus 11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 34456789999999999999987776 66765444333445789999888 999999999998 5542 478999999
Q ss_pred EccCCCCCceeEEEEEECcccCCCCCCccccCeeEEccc
Q psy8342 185 DMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRP 223 (225)
Q Consensus 185 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~p 223 (225)
|++.++++++||++.|+|+++..+... ..||.|+|
T Consensus 90 ~~~~~~~~~~lG~~~i~L~~l~~~~~~----~~w~~L~p 124 (124)
T cd08389 90 GVERMRKERLIGEKVVPLSQLNLEGET----TVWLTLEP 124 (124)
T ss_pred ECCCcccCceEEEEEEeccccCCCCCc----eEEEeCCC
Confidence 999999999999999999999776554 89999997
No 10
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.82 E-value=1e-19 Score=134.06 Aligned_cols=108 Identities=23% Similarity=0.306 Sum_probs=88.8
Q ss_pred CCCccceeEeeeeeecCCcCCCC-CC-eeEEEEeCC--CCccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEE
Q psy8342 111 EEPTEQIRLRIIAGHSLAKKDIF-GA-RIDLNTVNG--DQTIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQV 183 (225)
Q Consensus 111 ~~~~~~l~v~vi~a~~L~~~d~~-g~-~~~~~~~~~--~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V 183 (225)
....+.|.|+|++|+||+..+.. |. ++|+.+... .....++||+++++++||+|||+|.|.+... +..|.|+|
T Consensus 11 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V 90 (125)
T cd04029 11 DYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV 90 (125)
T ss_pred ECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 34568899999999999988753 44 667654443 2223467999999999999999999998753 46899999
Q ss_pred EEccCCCCCceeEEEEEECcccCCCCCCccccCeeEEcc
Q psy8342 184 FDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILR 222 (225)
Q Consensus 184 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 222 (225)
||++.++++++||++.|+|.++...+.. ..||+|+
T Consensus 91 ~d~~~~~~~~~lG~~~i~l~~~~~~~~~----~~w~~l~ 125 (125)
T cd04029 91 WHYDRFGRNTFLGEVEIPLDSWNFDSQH----EECLPLH 125 (125)
T ss_pred EECCCCCCCcEEEEEEEeCCcccccCCc----ccEEECc
Confidence 9999999999999999999999887655 8999995
No 11
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.81 E-value=2.2e-19 Score=132.06 Aligned_cols=107 Identities=23% Similarity=0.409 Sum_probs=90.8
Q ss_pred CCccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEEEEcc
Q psy8342 112 EPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVFDMN 187 (225)
Q Consensus 112 ~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~d~d 187 (225)
...+.|.|+|++|++|+.++..|. ++|+.+.........++|+++++++||+|||+|.|.+... ...|.|+|||++
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~ 92 (124)
T cd08387 13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD 92 (124)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence 346789999999999999988877 7777666543333468999999999999999999998754 368999999999
Q ss_pred CCCCCceeEEEEEECcccCCCCCCccccCeeEEcc
Q psy8342 188 RLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILR 222 (225)
Q Consensus 188 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 222 (225)
.++++++||++.++|+++..+... ..||.|+
T Consensus 93 ~~~~~~~iG~~~i~l~~~~~~~~~----~~W~~l~ 123 (124)
T cd08387 93 QFSRDECIGVVELPLAEVDLSEKL----DLWRKIQ 123 (124)
T ss_pred CCCCCceeEEEEEecccccCCCCc----ceEEECc
Confidence 999999999999999999876554 8999996
No 12
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.81 E-value=2.4e-19 Score=131.74 Aligned_cols=108 Identities=30% Similarity=0.420 Sum_probs=90.5
Q ss_pred CCCccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q psy8342 111 EEPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVFDM 186 (225)
Q Consensus 111 ~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~d~ 186 (225)
....+.|.|+|++|++|+.++..|. ++|+.+........+++|+++++++||+|||+|.|.+... ...|.|+|||+
T Consensus 12 ~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~ 91 (124)
T cd08385 12 DFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDF 91 (124)
T ss_pred eCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeC
Confidence 3456789999999999999988777 7777665443333468999999999999999999998753 46899999999
Q ss_pred cCCCCCceeEEEEEECcccCCCCCCccccCeeEEcc
Q psy8342 187 NRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILR 222 (225)
Q Consensus 187 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 222 (225)
+.++++++||++.++|.++..+... .+||.|+
T Consensus 92 d~~~~~~~lG~~~i~l~~~~~~~~~----~~W~~l~ 123 (124)
T cd08385 92 DRFSKHDLIGEVRVPLLTVDLGHVT----EEWRDLE 123 (124)
T ss_pred CCCCCCceeEEEEEecCcccCCCCc----ceEEEcc
Confidence 9999999999999999999776544 8999986
No 13
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.81 E-value=1.9e-19 Score=135.90 Aligned_cols=104 Identities=29% Similarity=0.386 Sum_probs=84.7
Q ss_pred ceeEeeeeeecCCcCCCCCC-eeEEEEeCCCC--ccCcccCceecCCCCCeeccEEEEEec------------C----CC
Q psy8342 116 QIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQ--TIDSALTKTRKKTLNPVWNEEFIFRVK------------P----SE 176 (225)
Q Consensus 116 ~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~--~~~~~kT~v~~~~~~P~Wne~f~f~v~------------~----~~ 176 (225)
+|.|+|++|++|+. .+|. ++|+.+..... ...+.+|+++++++||+|||+|.|.+. + ..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 48899999999987 4555 77776655432 224679999999999999999999995 1 12
Q ss_pred cEEEEEEEEccCCCCCceeEEEEEECcccCCC-CCCccccCeeEEcccCC
Q psy8342 177 HKLVFQVFDMNRLTRDDFLGMVELSLLNLPRE-SDGCVIHNKKYILRPRR 225 (225)
Q Consensus 177 ~~L~v~V~d~d~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~~w~~L~prs 225 (225)
..|.|.|||++.+++++|||++.|+|.++..+ ... ..||+|+|++
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~----~~W~~L~~~~ 124 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSH----QAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcC----cceeecCCcc
Confidence 57899999999988999999999999999876 333 8999999874
No 14
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.81 E-value=2.2e-19 Score=131.52 Aligned_cols=102 Identities=22% Similarity=0.345 Sum_probs=87.6
Q ss_pred eeEeeeeeecCCcCC-CCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEccCCCCCce
Q psy8342 117 IRLRIIAGHSLAKKD-IFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDDF 194 (225)
Q Consensus 117 l~v~vi~a~~L~~~d-~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~~ 194 (225)
|.|+|++|+||+.++ ..|. ++|+.+..+.. ..++|+++++++||+|||+|.|.+......|.|.|||++.++++++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~--~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQE--EVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCc--cEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCce
Confidence 679999999999874 3455 88888776543 2578999999999999999999998766899999999999999999
Q ss_pred eEEEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 195 LGMVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 195 lG~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
||.+.++|+++..+... ..||+|+|+
T Consensus 80 iG~~~i~l~~l~~~~~~----~~w~~L~~~ 105 (121)
T cd08401 80 IGKVAIKKEDLHKYYGK----DTWFPLQPV 105 (121)
T ss_pred EEEEEEEHHHccCCCCc----EeeEEEEcc
Confidence 99999999999875544 899999984
No 15
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.81 E-value=2.4e-19 Score=130.63 Aligned_cols=101 Identities=14% Similarity=0.254 Sum_probs=84.6
Q ss_pred ccceeEeeeeeecCCcCCCCCCeeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEccCCCCCc
Q psy8342 114 TEQIRLRIIAGHSLAKKDIFGARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDD 193 (225)
Q Consensus 114 ~~~l~v~vi~a~~L~~~d~~g~~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~ 193 (225)
++.|.|+|++|++|+..+.. ++|+.+..|.. +.+|+++++ .||.|||+|.|.+......|.|+|||.+.+ .||
T Consensus 1 m~~L~V~Vv~Ar~L~~~~~~--dPYV~Ik~g~~---k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD 73 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPDKF--NTYVTLKVQNV---KSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDT 73 (127)
T ss_pred CceEEEEEEEeeCCCCCCCC--CCeEEEEECCE---EeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCC
Confidence 36799999999999766543 67887777753 578888877 499999999999988777799999999965 899
Q ss_pred eeEEEEEECcccCCCCCCccccCeeEEccc
Q psy8342 194 FLGMVELSLLNLPRESDGCVIHNKKYILRP 223 (225)
Q Consensus 194 ~lG~~~i~l~~l~~~~~~~~~~~~w~~L~p 223 (225)
|||++.|+|.++..... .++.+||+|+|
T Consensus 74 ~lG~v~i~L~~v~~~~~--~~~~~Wy~L~~ 101 (127)
T cd08394 74 LVGTVWIPLSTIRQSNE--EGPGEWLTLDS 101 (127)
T ss_pred ceEEEEEEhHHcccCCC--CCCCccEecCh
Confidence 99999999999986643 34589999987
No 16
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.81 E-value=2.6e-19 Score=132.24 Aligned_cols=110 Identities=25% Similarity=0.231 Sum_probs=88.4
Q ss_pred CCccceeEeeeeeecCCcCCCC-CC-eeEEEEeCCCC--ccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEEE
Q psy8342 112 EPTEQIRLRIIAGHSLAKKDIF-GA-RIDLNTVNGDQ--TIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVF 184 (225)
Q Consensus 112 ~~~~~l~v~vi~a~~L~~~d~~-g~-~~~~~~~~~~~--~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~ 184 (225)
...+.|.|+|++|+||+.++.. |. ++|+.+..... ...+.||+++++++||+|||+|.|.+... ...|.|.||
T Consensus 12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~ 91 (128)
T cd08392 12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVW 91 (128)
T ss_pred CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence 4467999999999999999865 65 77775544332 34467999999999999999999998754 478999999
Q ss_pred EccCCCCCceeEEEEEECcccCCCCCCccccCeeEEcc
Q psy8342 185 DMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILR 222 (225)
Q Consensus 185 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 222 (225)
|.+.++++++||++.|+|.++...... .....||+|.
T Consensus 92 ~~~~~~~~~~lG~~~i~L~~~~~~~~~-~~~~~W~~l~ 128 (128)
T cd08392 92 HSRTLKRRVFLGEVLIPLADWDFEDTD-SQRFLWYPLN 128 (128)
T ss_pred eCCCCcCcceEEEEEEEcCCcccCCCC-ccccceEECc
Confidence 999999999999999999999755321 2238999983
No 17
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.81 E-value=3.1e-19 Score=131.34 Aligned_cols=109 Identities=28% Similarity=0.409 Sum_probs=90.6
Q ss_pred CCCccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC----CcEEEEEEEE
Q psy8342 111 EEPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS----EHKLVFQVFD 185 (225)
Q Consensus 111 ~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~----~~~L~v~V~d 185 (225)
....+.|.|+|++|++|+..+..+. ++|+.+........+.+|+++++++||+|||+|.|.+... ...|.|+|||
T Consensus 12 ~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d 91 (125)
T cd08386 12 DFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLD 91 (125)
T ss_pred CCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence 3446789999999999999988777 7777665533333468999999999999999999985432 3579999999
Q ss_pred ccCCCCCceeEEEEEECcccCCCCCCccccCeeEEccc
Q psy8342 186 MNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRP 223 (225)
Q Consensus 186 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~p 223 (225)
++.+++++|||++.++|.++..+... ..||.|+|
T Consensus 92 ~d~~~~~~~iG~~~i~l~~l~~~~~~----~~W~~l~~ 125 (125)
T cd08386 92 YDRFSRNDPIGEVSLPLNKVDLTEEQ----TFWKDLKP 125 (125)
T ss_pred CCCCcCCcEeeEEEEecccccCCCCc----ceEEecCC
Confidence 99999999999999999999876555 89999987
No 18
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.81 E-value=1.9e-19 Score=132.12 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=88.4
Q ss_pred CCCCccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCc---cCcccCceecCCCCCeeccEEEEEecCC---CcEEEEE
Q psy8342 110 PEEPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQT---IDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQ 182 (225)
Q Consensus 110 ~~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~---~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~ 182 (225)
.....+.|.|.|++|+||+.++..|. ++|+.+..-+.. ..+++|+++++++||+|||+|.|.+... +..|.|+
T Consensus 9 Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~ 88 (124)
T cd08680 9 YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVD 88 (124)
T ss_pred ECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEE
Confidence 34567889999999999999887766 666654432222 2478999999999999999999998764 4789999
Q ss_pred EEEccCCCCCceeEEEEEECcccCCCCCCccccCeeEEc
Q psy8342 183 VFDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYIL 221 (225)
Q Consensus 183 V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L 221 (225)
|||.+.++++++||++.|+|.++....+. ...||.|
T Consensus 89 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~---~~~Wy~l 124 (124)
T cd08680 89 VCSVGPDQQEECLGGAQISLADFESSEEM---STKWYNL 124 (124)
T ss_pred EEeCCCCCceeEEEEEEEEhhhccCCCcc---ccccccC
Confidence 99999999999999999999999655432 2789986
No 19
>KOG1030|consensus
Probab=99.81 E-value=1.1e-19 Score=136.31 Aligned_cols=93 Identities=32% Similarity=0.516 Sum_probs=86.2
Q ss_pred CccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEccCCCC
Q psy8342 113 PTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTR 191 (225)
Q Consensus 113 ~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~~ 191 (225)
..|.|+|.|++|.+|..+|..++ ++|+++.+|.+ +.||+++++++||+|||.|.|.+..+...|+++|||+|.++.
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q---~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~ 80 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQ---KLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSS 80 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCe---eeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCc
Confidence 46889999999999999999666 99999999876 678999999999999999999999999999999999999999
Q ss_pred CceeEEEEEECcccCCC
Q psy8342 192 DDFLGMVELSLLNLPRE 208 (225)
Q Consensus 192 d~~lG~~~i~l~~l~~~ 208 (225)
|||||.+.|+|..+...
T Consensus 81 dD~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 81 DDFMGEATIPLKPLLEA 97 (168)
T ss_pred ccccceeeeccHHHHHH
Confidence 99999999999987754
No 20
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.80 E-value=4.8e-19 Score=129.66 Aligned_cols=103 Identities=29% Similarity=0.429 Sum_probs=89.8
Q ss_pred ceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEccCCCCCce
Q psy8342 116 QIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDDF 194 (225)
Q Consensus 116 ~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~~ 194 (225)
+|.|+|++|++|+..+..|. ++|+.+..+.. ..++|+++++++||.|||+|.|.+......|.|+|||++.++++++
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~--~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~ 78 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGK--TVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDF 78 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCE--EEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcc
Confidence 58899999999999998877 88887766532 2579999999999999999999998767899999999999999999
Q ss_pred eEEEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 195 LGMVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 195 lG~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
||.+.++|.++..+... ..||+|.++
T Consensus 79 iG~~~~~l~~l~~~~~~----~~~~~L~~~ 104 (121)
T cd04042 79 MGSAFVDLSTLELNKPT----EVKLKLEDP 104 (121)
T ss_pred eEEEEEEHHHcCCCCCe----EEEEECCCC
Confidence 99999999999976555 789999754
No 21
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.80 E-value=4.6e-19 Score=130.87 Aligned_cols=103 Identities=29% Similarity=0.437 Sum_probs=86.7
Q ss_pred ceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC----CcEEEEEEEEccCCC
Q psy8342 116 QIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS----EHKLVFQVFDMNRLT 190 (225)
Q Consensus 116 ~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~----~~~L~v~V~d~d~~~ 190 (225)
+|.|+|++|++|+..+..|. ++|+.+..+.. +++|+++++++||+|||+|.|.+... ...|.|+|||.+.++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~---~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQ---KKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCE---EecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 48899999999999988777 88887776643 57899999999999999999999754 257999999999887
Q ss_pred -CCceeEEEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 191 -RDDFLGMVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 191 -~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
+++|||++.++|.++..... ...+||+|+++
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~---~~~~w~~L~~~ 109 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSE---AVVQRYPLEKR 109 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCC---ccceEeEeeeC
Confidence 89999999999999983222 13899999975
No 22
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.80 E-value=3.6e-19 Score=128.43 Aligned_cols=101 Identities=28% Similarity=0.370 Sum_probs=85.0
Q ss_pred cceeEeeeeeecCCcCCCC-CC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC----CcEEEEEEEEccC
Q psy8342 115 EQIRLRIIAGHSLAKKDIF-GA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS----EHKLVFQVFDMNR 188 (225)
Q Consensus 115 ~~l~v~vi~a~~L~~~d~~-g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~----~~~L~v~V~d~d~ 188 (225)
|.|.|+|++|++|+..+.. |. ++|+.+.........++|+++++++||+|||+|.|.+... ...|.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 5799999999999999887 66 7888765543333467999999999999999999988753 3689999999999
Q ss_pred CCCCceeEEEEEECcccCCCCCCccccCeeEEcc
Q psy8342 189 LTRDDFLGMVELSLLNLPRESDGCVIHNKKYILR 222 (225)
Q Consensus 189 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 222 (225)
++++++||++.++|.+|... ..|++|+
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~-------~~~~~~~ 107 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED-------RNWMGRR 107 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC-------CCCCccc
Confidence 99999999999999999854 6677764
No 23
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.80 E-value=8.6e-19 Score=127.95 Aligned_cols=103 Identities=26% Similarity=0.454 Sum_probs=87.9
Q ss_pred eeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC-CcEEEEEEEEccCCCCCce
Q psy8342 117 IRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS-EHKLVFQVFDMNRLTRDDF 194 (225)
Q Consensus 117 l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~-~~~L~v~V~d~d~~~~d~~ 194 (225)
|.|+|++|++|+..+..|. ++|+.+..+.....+++|++++++.||+|||+|.|.+... ...|.|+|||++.+ ++++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 7899999999999887777 8888776653333468999999999999999999998764 35799999999998 8999
Q ss_pred eEEEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 195 LGMVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 195 lG~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
||++.++|.++..+... ..||+|++.
T Consensus 81 iG~~~~~l~~l~~g~~~----~~~~~L~~~ 106 (119)
T cd04036 81 LGTVLFDVSKLKLGEKV----RVTFSLNPQ 106 (119)
T ss_pred cEEEEEEHHHCCCCCcE----EEEEECCCC
Confidence 99999999999877655 899999874
No 24
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.80 E-value=8.2e-19 Score=127.41 Aligned_cols=101 Identities=27% Similarity=0.417 Sum_probs=89.0
Q ss_pred eeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC-CcEEEEEEEEccCCCCCce
Q psy8342 117 IRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS-EHKLVFQVFDMNRLTRDDF 194 (225)
Q Consensus 117 l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~-~~~L~v~V~d~d~~~~d~~ 194 (225)
+.|+|++|++|+..+..|. ++|+.+..+.. +.+|+++++++||.|||+|.|.+... ...|.|+|||++.++++++
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~---~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~ 78 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNE---KYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEF 78 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECCE---eEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCe
Confidence 6899999999999988777 88888776642 57899999999999999999999876 5899999999999999999
Q ss_pred eEEEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 195 LGMVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 195 lG~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
||++.++|.++..+... ..||+|+|.
T Consensus 79 iG~~~~~l~~l~~~~~~----~~w~~L~~~ 104 (116)
T cd08376 79 IGRCEIDLSALPREQTH----SLELELEDG 104 (116)
T ss_pred EEEEEEeHHHCCCCCce----EEEEEccCC
Confidence 99999999999876544 899999874
No 25
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.80 E-value=9.4e-19 Score=128.47 Aligned_cols=102 Identities=27% Similarity=0.444 Sum_probs=88.3
Q ss_pred ceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC-CcEEEEEEEEccCCCCCc
Q psy8342 116 QIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS-EHKLVFQVFDMNRLTRDD 193 (225)
Q Consensus 116 ~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~-~~~L~v~V~d~d~~~~d~ 193 (225)
+|+|+|++|++|..++..+. ++|+.+..+.. +++|+++++++||+|||+|.|.+... ...|.|+|||++.+++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~---~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQ---TLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCE---EEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 48899999999999988777 88887766532 57899999999999999999999875 468999999999999999
Q ss_pred eeEEEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 194 FLGMVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 194 ~lG~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
|||++.++|.++...... ..||.|.|.
T Consensus 78 ~iG~~~~~l~~l~~~~~~----~~w~~L~~~ 104 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQE----EGWFRLLPD 104 (123)
T ss_pred EeEEEEEEHHHcccCCCC----CCEEECCCC
Confidence 999999999999765433 899999984
No 26
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.79 E-value=6.7e-19 Score=130.18 Aligned_cols=110 Identities=24% Similarity=0.305 Sum_probs=88.7
Q ss_pred CCccceeEeeeeeecCCcCCCC-CC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEE-ecC---CCcEEEEEEEE
Q psy8342 112 EPTEQIRLRIIAGHSLAKKDIF-GA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFR-VKP---SEHKLVFQVFD 185 (225)
Q Consensus 112 ~~~~~l~v~vi~a~~L~~~d~~-g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~-v~~---~~~~L~v~V~d 185 (225)
.....|.|+|++|++|+..+.. |. ++|+.+........+.+|+++++++||+|||+|.|. +.. ....|.|.|||
T Consensus 13 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d 92 (128)
T cd08388 13 SEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLS 92 (128)
T ss_pred CCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEE
Confidence 3467899999999999998876 55 778776554444446799999999999999999994 442 23579999999
Q ss_pred ccCCCCCceeEEEEEECcccCCCCCCccccCeeEEccc
Q psy8342 186 MNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRP 223 (225)
Q Consensus 186 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~p 223 (225)
++.++++++||++.++|.++....... ...|.+|+|
T Consensus 93 ~d~~~~d~~lG~~~i~L~~l~~~~~~~--~~~~~~~~~ 128 (128)
T cd08388 93 FDRYSRDDVIGEVVCPLAGADLLNEGE--LLVSREIQP 128 (128)
T ss_pred cCCCCCCceeEEEEEeccccCCCCCce--EEEEEeccC
Confidence 999999999999999999997653221 279999987
No 27
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.79 E-value=1e-18 Score=129.91 Aligned_cols=109 Identities=60% Similarity=0.907 Sum_probs=90.1
Q ss_pred ceeEeeeeeecCCcCCCCCC-eeEEEEeCCCC----ccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEccCCC
Q psy8342 116 QIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQ----TIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLT 190 (225)
Q Consensus 116 ~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~----~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~ 190 (225)
.|.|+|++|++|+.++..|. ++|+.+..... ...+.+|+++++++||+|||+|.|.+......|.|+|||++.++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 47899999999999988777 77776655432 12356899999999999999999999876778999999999999
Q ss_pred CCceeEEEEEECcccCCCCCC--ccccCeeEEcccC
Q psy8342 191 RDDFLGMVELSLLNLPRESDG--CVIHNKKYILRPR 224 (225)
Q Consensus 191 ~d~~lG~~~i~l~~l~~~~~~--~~~~~~w~~L~pr 224 (225)
++++||++.+++.++...... .....+||+|+|+
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~ 116 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR 116 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeeec
Confidence 999999999999999865432 1234799999976
No 28
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.79 E-value=1.2e-18 Score=128.53 Aligned_cols=101 Identities=24% Similarity=0.484 Sum_probs=86.4
Q ss_pred eeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEccCCCCCcee
Q psy8342 117 IRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDDFL 195 (225)
Q Consensus 117 l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~~l 195 (225)
|.|+|++|++|+. ..|. ++|+.+..+. ...+++|+++++++||+|||.|.|.+......|.|+|||++..++++||
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE-PPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECC-CCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceE
Confidence 5799999999987 4555 8888776653 2236899999999999999999999976667899999999999999999
Q ss_pred EEEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 196 GMVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 196 G~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
|++.++|+++..+... ..||+|+|+
T Consensus 78 G~~~i~l~~l~~~~~~----~~~~~L~~~ 102 (126)
T cd08678 78 GLAIVPFDELRKNPSG----RQIFPLQGR 102 (126)
T ss_pred EEEEEeHHHhccCCce----eEEEEecCC
Confidence 9999999999977555 789999976
No 29
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=2e-18 Score=130.87 Aligned_cols=106 Identities=24% Similarity=0.371 Sum_probs=88.8
Q ss_pred ceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecC-CCCCeeccEEEEEecCC-CcEEEEEEEEccCCCCC
Q psy8342 116 QIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKK-TLNPVWNEEFIFRVKPS-EHKLVFQVFDMNRLTRD 192 (225)
Q Consensus 116 ~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~-~~~P~Wne~f~f~v~~~-~~~L~v~V~d~d~~~~d 192 (225)
.|.|+|++|++|+.++.+|. ++|+.+..+.. +.+|+++.+ ++||+|||+|.|.+... ...|.|.|||++.++++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~---~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQ---VLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCE---EeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 37899999999999998887 88998887753 678998876 69999999999999754 46899999999998889
Q ss_pred ceeEEEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 193 DFLGMVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 193 ~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
++||++.|+|+++..+........+||+|++.
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~ 109 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERP 109 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCC
Confidence 99999999999997653222334899999864
No 30
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.78 E-value=1.2e-18 Score=127.21 Aligned_cols=104 Identities=16% Similarity=0.298 Sum_probs=84.7
Q ss_pred CccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCC--ccCcccCceecCCCCCeeccEEEEEecCC--CcEEEEEEEEcc
Q psy8342 113 PTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQ--TIDSALTKTRKKTLNPVWNEEFIFRVKPS--EHKLVFQVFDMN 187 (225)
Q Consensus 113 ~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~--~~~~~kT~v~~~~~~P~Wne~f~f~v~~~--~~~L~v~V~d~d 187 (225)
..+.|.|+|++|+||+.++ .|. ++|+.+..... ...+.+|+++++++||+|||+|.|.+... ...|.|+|||.+
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 3578999999999999988 565 77776554432 23366899999999999999999998753 357889999999
Q ss_pred CCC-CCceeEEEEEECcccCCCCCCccccCeeEEc
Q psy8342 188 RLT-RDDFLGMVELSLLNLPRESDGCVIHNKKYIL 221 (225)
Q Consensus 188 ~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L 221 (225)
..+ +++|||++.|+|.++..+... .+||.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~----~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEI----SGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccc----cceEeC
Confidence 876 478999999999999866544 899987
No 31
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.78 E-value=2.6e-18 Score=126.34 Aligned_cols=106 Identities=28% Similarity=0.350 Sum_probs=85.8
Q ss_pred CCccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCC--ccCcccCceecCCCCCeeccEEEEEecC----CCcEEEEEEE
Q psy8342 112 EPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQ--TIDSALTKTRKKTLNPVWNEEFIFRVKP----SEHKLVFQVF 184 (225)
Q Consensus 112 ~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~--~~~~~kT~v~~~~~~P~Wne~f~f~v~~----~~~~L~v~V~ 184 (225)
...+.|.|+|++|++|+..+..+. ++|+.+..... ...+++|+++++++||+|||+|.|.+.. ....|.|+||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 345789999999999999987776 77776654431 2346799999999999999999998654 2468999999
Q ss_pred EccCCCCCceeEEEEEECcccCCCCCCccccCeeEEcc
Q psy8342 185 DMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILR 222 (225)
Q Consensus 185 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 222 (225)
|++.++++++||++.++|.+... ... ..||+|+
T Consensus 93 d~~~~~~~~~iG~~~i~l~~~~~-~~~----~~W~~L~ 125 (125)
T cd04031 93 DYDRDGENDFLGEVVIDLADALL-DDE----PHWYPLQ 125 (125)
T ss_pred eCCCCCCCcEeeEEEEecccccc-cCC----cceEECc
Confidence 99999999999999999998332 222 7899996
No 32
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.78 E-value=1.4e-18 Score=127.44 Aligned_cols=109 Identities=24% Similarity=0.337 Sum_probs=89.9
Q ss_pred CCCccceeEeeeeeecCCcCC-CCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q psy8342 111 EEPTEQIRLRIIAGHSLAKKD-IFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVFD 185 (225)
Q Consensus 111 ~~~~~~l~v~vi~a~~L~~~d-~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~d 185 (225)
....+.|.|+|++|++|+..+ ..+. ++|+.+..........+|+++++++||+|||+|.|.+... ...|.|+|||
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d 89 (123)
T cd08390 10 DLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYD 89 (123)
T ss_pred CCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEE
Confidence 445678999999999999988 5665 7777655432223357899999999999999999998753 3589999999
Q ss_pred ccCCCCCceeEEEEEECcccCCCCCCccccCeeEEccc
Q psy8342 186 MNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRP 223 (225)
Q Consensus 186 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~p 223 (225)
.+..+++++||++.++|+++...... ..|++|+|
T Consensus 90 ~~~~~~~~~iG~~~i~L~~l~~~~~~----~~w~~L~~ 123 (123)
T cd08390 90 VDRFSRHCIIGHVLFPLKDLDLVKGG----VVWRDLEP 123 (123)
T ss_pred CCcCCCCcEEEEEEEeccceecCCCc----eEEEeCCC
Confidence 99998999999999999999877655 79999987
No 33
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.78 E-value=2.2e-18 Score=127.07 Aligned_cols=108 Identities=19% Similarity=0.206 Sum_probs=88.6
Q ss_pred CCCccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCC--ccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEEE
Q psy8342 111 EEPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQ--TIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVF 184 (225)
Q Consensus 111 ~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~--~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~ 184 (225)
....+.|.|+|++|+||+..+..+. ++|+.+..... ...+++|++++++.||+|||+|.|.+... ...|.|.||
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~ 91 (127)
T cd04030 12 SSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK 91 (127)
T ss_pred eCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence 3456889999999999999988776 77776554322 24478999999999999999999998653 368999999
Q ss_pred EccCC--CCCceeEEEEEECcccCCCCCCccccCeeEEcc
Q psy8342 185 DMNRL--TRDDFLGMVELSLLNLPRESDGCVIHNKKYILR 222 (225)
Q Consensus 185 d~d~~--~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 222 (225)
|.+.+ +++++||++.++|.++..+... .+||.|+
T Consensus 92 ~~~~~~~~~~~~iG~~~i~l~~l~~~~~~----~~W~~L~ 127 (127)
T cd04030 92 NSKSFLSREKKLLGQVLIDLSDLDLSKGF----TQWYDLT 127 (127)
T ss_pred ECCcccCCCCceEEEEEEecccccccCCc----cceEECc
Confidence 99875 6899999999999999765444 8999985
No 34
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.78 E-value=2.7e-18 Score=125.90 Aligned_cols=107 Identities=25% Similarity=0.320 Sum_probs=87.4
Q ss_pred CCCccceeEeeeeeecCCcCC-CCCC-eeEEEEeCC--CCccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEE
Q psy8342 111 EEPTEQIRLRIIAGHSLAKKD-IFGA-RIDLNTVNG--DQTIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQV 183 (225)
Q Consensus 111 ~~~~~~l~v~vi~a~~L~~~d-~~g~-~~~~~~~~~--~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V 183 (225)
....+.|.|+|++|+||+..+ ..+. ++|+.+... .....+.+|+++++++||+|||+|.|.+... ...|.|+|
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v 89 (123)
T cd08521 10 NYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSV 89 (123)
T ss_pred eCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 345678999999999999988 5555 777765432 2222468999999999999999999998753 46899999
Q ss_pred EEccCCCCCceeEEEEEECcccCCCCCCccccCeeEEc
Q psy8342 184 FDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYIL 221 (225)
Q Consensus 184 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L 221 (225)
||++.++++++||++.++|+++..+... ..||+|
T Consensus 90 ~d~~~~~~~~~iG~~~i~l~~l~~~~~~----~~w~~l 123 (123)
T cd08521 90 WHHDRFGRNTFLGEVEIPLDSWDLDSQQ----SEWYPL 123 (123)
T ss_pred EeCCCCcCCceeeEEEEecccccccCCC----ccEEEC
Confidence 9999999999999999999999765444 899987
No 35
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.77 E-value=2.5e-18 Score=123.80 Aligned_cols=102 Identities=25% Similarity=0.343 Sum_probs=85.3
Q ss_pred eeEeeeeeecCCcCCC-CCC-eeEEEEeCCCCccCcccCceecCCCCCee-ccEEEEEecCC---CcEEEEEEEEccCCC
Q psy8342 117 IRLRIIAGHSLAKKDI-FGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVW-NEEFIFRVKPS---EHKLVFQVFDMNRLT 190 (225)
Q Consensus 117 l~v~vi~a~~L~~~d~-~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~W-ne~f~f~v~~~---~~~L~v~V~d~d~~~ 190 (225)
|.|+|++|++|+.++. .|. ++|+.+..+. .+++|+++++++||.| ||+|.|.+... +..|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~---~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS---TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC---eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 6799999999998884 455 8888877764 3789999999999999 99999999764 368999999999999
Q ss_pred CCceeEEEEEECcccCCCCCCccccCeeEEcc
Q psy8342 191 RDDFLGMVELSLLNLPRESDGCVIHNKKYILR 222 (225)
Q Consensus 191 ~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 222 (225)
++++||++.++|.++...... ....+||+|.
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~-~~~~~w~~l~ 108 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSV-SQISGWFPIY 108 (110)
T ss_pred CCCceEEEEEeHHHhcccCCc-cccCCeEEcc
Confidence 999999999999999863211 1138999985
No 36
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.77 E-value=3.6e-18 Score=124.38 Aligned_cols=102 Identities=22% Similarity=0.291 Sum_probs=86.0
Q ss_pred cceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceec-CCCCCeeccEEEEEecCC-CcEEEEEEEEccCCCC
Q psy8342 115 EQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRK-KTLNPVWNEEFIFRVKPS-EHKLVFQVFDMNRLTR 191 (225)
Q Consensus 115 ~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~-~~~~P~Wne~f~f~v~~~-~~~L~v~V~d~d~~~~ 191 (225)
|.|.|+|++|++|+..+..|. ++|+.+..+.. +.+|+++. +++||+|||+|.|.+... ...|.|+|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~---~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGV---TKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCC---ccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 579999999999999988877 88888777642 57888875 579999999999999864 478999999999876
Q ss_pred CceeEEEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 192 DDFLGMVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 192 d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
+++||++.+++.++..+... ..||.|.+.
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~----~~w~~L~~~ 105 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEF----DDWYELTLK 105 (118)
T ss_pred CcceEEEEEecHHHhhcCCC----CCcEEeccC
Confidence 89999999999998765443 899999854
No 37
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.77 E-value=3.2e-18 Score=126.27 Aligned_cols=106 Identities=25% Similarity=0.325 Sum_probs=88.8
Q ss_pred cceeEeeeeeecCCcCCC--CCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecC-CCcEEEEEEEEccCCC
Q psy8342 115 EQIRLRIIAGHSLAKKDI--FGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKP-SEHKLVFQVFDMNRLT 190 (225)
Q Consensus 115 ~~l~v~vi~a~~L~~~d~--~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~-~~~~L~v~V~d~d~~~ 190 (225)
|.|.|+|++|++|+..+. .+. ++|+.+..+.. +++|+++++++||.|||+|.|.+.. ....|.|+|||++.++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~---~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQ---RFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCE---EEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 568999999999999887 666 88887766542 6799999999999999999999986 4579999999999998
Q ss_pred CCceeEEEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 191 RDDFLGMVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 191 ~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
++++||++.++|.++.... .......||.|+++
T Consensus 78 ~~~~lG~~~i~l~~~~~~~-~~~~~~~w~~L~~~ 110 (128)
T cd04024 78 GKDYLGEFDIALEEVFADG-KTGQSDKWITLKST 110 (128)
T ss_pred CCCcceEEEEEHHHhhccc-ccCccceeEEccCc
Confidence 9999999999999987421 11223899999876
No 38
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.77 E-value=4e-18 Score=124.83 Aligned_cols=104 Identities=31% Similarity=0.445 Sum_probs=88.7
Q ss_pred ceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEccCCCCCce
Q psy8342 116 QIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDDF 194 (225)
Q Consensus 116 ~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~~ 194 (225)
.|.|+|++|++|+.++..|. ++|+.+..+... ..+|+++++++||+|||.|.|.+......|.|.|||++.++++++
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDNEV--IIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCCCCceEEEEECCEe--eeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCE
Confidence 37899999999999998888 888877765422 469999999999999999999998776899999999999999999
Q ss_pred eEEEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 195 LGMVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 195 lG~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
||++.++++++...... ...||.|+|+
T Consensus 79 iG~~~~~~~~~~~~~~~---~~~W~~L~~~ 105 (121)
T cd04054 79 IGKVSLTREVISAHPRG---IDGWMNLTEV 105 (121)
T ss_pred EEEEEEcHHHhccCCCC---CCcEEECeee
Confidence 99999999988753221 2799999873
No 39
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.76 E-value=7.7e-18 Score=122.74 Aligned_cols=101 Identities=30% Similarity=0.420 Sum_probs=87.8
Q ss_pred cceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEccCCCCCc
Q psy8342 115 EQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDD 193 (225)
Q Consensus 115 ~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~ 193 (225)
|.|.|+|++|++|+..+..+. ++|+.+..+.. .++|++++++.||.|||+|.|.+......|.|+|||++.+++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~---~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~ 77 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNA---RLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPE 77 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCE---eeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCc
Confidence 578999999999999988777 88887766543 47999999999999999999999876789999999999988999
Q ss_pred eeEEEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 194 FLGMVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 194 ~lG~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
+||++.++|.++..+. ..||.|.++
T Consensus 78 ~iG~~~~~l~~~~~~~------~~~~~l~~~ 102 (119)
T cd08377 78 FLGKVAIPLLSIKNGE------RKWYALKDK 102 (119)
T ss_pred eeeEEEEEHHHCCCCC------ceEEECccc
Confidence 9999999999987542 689999764
No 40
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.76 E-value=5.6e-18 Score=124.49 Aligned_cols=104 Identities=26% Similarity=0.428 Sum_probs=88.8
Q ss_pred cceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceec-CCCCCeeccEEEEEecCC----CcEEEEEEEEccC
Q psy8342 115 EQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRK-KTLNPVWNEEFIFRVKPS----EHKLVFQVFDMNR 188 (225)
Q Consensus 115 ~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~-~~~~P~Wne~f~f~v~~~----~~~L~v~V~d~d~ 188 (225)
|.|.|+|++|++|+..+..+. ++|+.+..+.. .++|++++ ++.||+|||+|.|.+... ...|.|+|||.+.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~---~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQ---ERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCE---eeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 578999999999999887777 88887766543 46788877 489999999999999876 4789999999999
Q ss_pred CCCCceeEEEEEECcccCCCCCCccccCeeEEcccCC
Q psy8342 189 LTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRPRR 225 (225)
Q Consensus 189 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~prs 225 (225)
++++++||.+.++|.++..+... ..||.|+|+.
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~----~~~~~l~p~~ 110 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVE----PGTAELVPAK 110 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCC----cCceEeeccc
Confidence 98999999999999999865444 8999999963
No 41
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.76 E-value=7.8e-18 Score=124.32 Aligned_cols=101 Identities=31% Similarity=0.477 Sum_probs=85.9
Q ss_pred ceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEccCC-----
Q psy8342 116 QIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRL----- 189 (225)
Q Consensus 116 ~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~----- 189 (225)
.|.|+|++|++|+..+..|. ++|+.+..+.. +.+|+++++++||.|||+|.|.+......|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~---~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKT---KKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCE---eeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence 68999999999999998777 88887776542 5799999999999999999999876667899999999853
Q ss_pred ------CCCceeEEEEEECcccCCCCCCccccCeeEEcccCC
Q psy8342 190 ------TRDDFLGMVELSLLNLPRESDGCVIHNKKYILRPRR 225 (225)
Q Consensus 190 ------~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~prs 225 (225)
+.+++||.+.+++.++... . ..||.|+|++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~~~--~----~~w~~L~~~~ 114 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLSGE--M----DVWYNLEKRT 114 (127)
T ss_pred ceeccccCCCcceEEEEEhHHccCC--C----CeEEECccCC
Confidence 4689999999999988533 2 7999999864
No 42
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.76 E-value=5.3e-18 Score=121.08 Aligned_cols=101 Identities=22% Similarity=0.320 Sum_probs=85.8
Q ss_pred ceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC-CcEEEEEEEEccCCCCCc
Q psy8342 116 QIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS-EHKLVFQVFDMNRLTRDD 193 (225)
Q Consensus 116 ~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~-~~~L~v~V~d~d~~~~d~ 193 (225)
.|.|+|++|++|+..+..+. ++|+.+..+. .+++|++++++.||+|||+|.|.+... ...|.|+|||++. ++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~---~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK---TTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECC---EEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 37899999999999887776 8888887775 368899999999999999999999874 4789999999886 78
Q ss_pred eeEEEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 194 FLGMVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 194 ~lG~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
+||++.++|.++.... .....+||+|+++
T Consensus 75 ~iG~~~i~l~~l~~~~--~~~~~~w~~L~~~ 103 (105)
T cd04050 75 SLGSLTLPLSELLKEP--DLTLDQPFPLDNS 103 (105)
T ss_pred ccEEEEEEHHHhhccc--cceeeeeEecCCC
Confidence 9999999999998653 2234899999876
No 43
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.76 E-value=9.8e-18 Score=122.73 Aligned_cols=102 Identities=25% Similarity=0.430 Sum_probs=83.6
Q ss_pred eeEeeeeeecCCcCCCCCCeeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecC-CCcEEEEEEEEccCCCCCcee
Q psy8342 117 IRLRIIAGHSLAKKDIFGARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKP-SEHKLVFQVFDMNRLTRDDFL 195 (225)
Q Consensus 117 l~v~vi~a~~L~~~d~~g~~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~-~~~~L~v~V~d~d~~~~d~~l 195 (225)
|.|+|++|++|+.+ ..++|+.+..+.. +.+|+++++++||+|||+|.|.+.. ....|.|+|||.+.+ +++||
T Consensus 2 L~V~Vi~a~~L~~~---~~Dpyv~v~l~~~---~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~l 74 (121)
T cd08378 2 LYVRVVKARGLPAN---SNDPVVEVKLGNY---KGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFL 74 (121)
T ss_pred EEEEEEEecCCCcc---cCCCEEEEEECCc---cccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCcee
Confidence 78999999999887 2377777766642 6799999999999999999999876 457899999999987 78999
Q ss_pred EEEEEECcccCCCCC-CccccCeeEEcccCC
Q psy8342 196 GMVELSLLNLPRESD-GCVIHNKKYILRPRR 225 (225)
Q Consensus 196 G~~~i~l~~l~~~~~-~~~~~~~w~~L~prs 225 (225)
|++.++|+++..... ......+||.|+++.
T Consensus 75 G~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~ 105 (121)
T cd08378 75 GGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK 105 (121)
T ss_pred eeEEEEhHhCcCCCCCCCCCCcceEEccCCC
Confidence 999999999875432 222347999998763
No 44
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.75 E-value=1.4e-17 Score=122.86 Aligned_cols=101 Identities=23% Similarity=0.399 Sum_probs=83.1
Q ss_pred cceeEeeeeeecCCcCCCCCCeeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCC-cEEEEEEEEccCCCCCc
Q psy8342 115 EQIRLRIIAGHSLAKKDIFGARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSE-HKLVFQVFDMNRLTRDD 193 (225)
Q Consensus 115 ~~l~v~vi~a~~L~~~d~~g~~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~-~~L~v~V~d~d~~~~d~ 193 (225)
..|+|.|++|+||+.++. .++|+.+..+.. ...+|+++ +++||.|||+|.|.+.... ..|.|.|||++.+++++
T Consensus 4 ~~L~V~Vi~A~~L~~~~~--~DPYv~v~l~~~--~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 4 RSLQLNVLEAHKLPVKHV--PHPYCVISLNEV--KVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eEEEEEEEEeeCCCCCCC--CCeeEEEEECCE--eEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 469999999999987542 278887777643 24678874 6899999999999976554 57899999999999999
Q ss_pred eeEEEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 194 FLGMVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 194 ~lG~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
+||++.++|.++..+... ..||.|+|.
T Consensus 79 ~iG~v~i~l~~l~~~~~~----~~W~~L~~~ 105 (126)
T cd08400 79 EIAEVTVQLSKLQNGQET----DEWYPLSSA 105 (126)
T ss_pred eEEEEEEEHhHccCCCcc----cEeEEcccC
Confidence 999999999999876544 899999975
No 45
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.75 E-value=1.6e-17 Score=123.95 Aligned_cols=111 Identities=27% Similarity=0.384 Sum_probs=90.4
Q ss_pred CCCCCccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC-CcEEEEEEEEc
Q psy8342 109 APEEPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS-EHKLVFQVFDM 186 (225)
Q Consensus 109 ~~~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~-~~~L~v~V~d~ 186 (225)
......|.|.|+|++|++|+..+..|. ++|+.+..+.. +++|+++++++||.|||+|.|.+... ...|.|+|||+
T Consensus 9 ~~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~---~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~ 85 (136)
T cd08375 9 QRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQ---EHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDR 85 (136)
T ss_pred cCCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCE---eeeccccCCCCCCccCceEEEEecCccCCEEEEEEEEC
Confidence 445677999999999999999988887 88888777643 68999999999999999999999764 46899999999
Q ss_pred cCCCCCceeEEEEEECcccCCCCC-CccccCeeEEcc
Q psy8342 187 NRLTRDDFLGMVELSLLNLPRESD-GCVIHNKKYILR 222 (225)
Q Consensus 187 d~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~~w~~L~ 222 (225)
+.+++|++||++.++|.++..... ......+|..|+
T Consensus 86 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~ 122 (136)
T cd08375 86 DFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH 122 (136)
T ss_pred CCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc
Confidence 999999999999999999986322 111114566654
No 46
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.75 E-value=2.1e-17 Score=121.36 Aligned_cols=103 Identities=29% Similarity=0.443 Sum_probs=85.6
Q ss_pred ceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEccCCCC--C
Q psy8342 116 QIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTR--D 192 (225)
Q Consensus 116 ~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~~--d 192 (225)
.|+|+|++|++|+.++..|. ++|+.+..+. ...++|+++++++||.|||+|.|.+.. ...|.|+|||++.+++ +
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDG--GQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECC--ccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCC
Confidence 37899999999999988777 7887776642 236899999999999999999999976 6799999999998875 5
Q ss_pred ceeEEEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 193 DFLGMVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 193 ~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
+|||++.+++.++...... ...||+|++.
T Consensus 78 ~~lG~~~i~l~~l~~~~~~---~~~~~~l~~~ 106 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDT---GYQRLDLRKL 106 (123)
T ss_pred ceEeEEEEEHHHccccCCC---ccceeEeecC
Confidence 7999999999998754322 2679999764
No 47
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.74 E-value=2e-17 Score=123.69 Aligned_cols=104 Identities=28% Similarity=0.437 Sum_probs=86.2
Q ss_pred eeEeeeeeecCCcCCCCCC-eeEEEEeCCC-CccCcccCceecCCCCCeeccEEEEEecCC----------------CcE
Q psy8342 117 IRLRIIAGHSLAKKDIFGA-RIDLNTVNGD-QTIDSALTKTRKKTLNPVWNEEFIFRVKPS----------------EHK 178 (225)
Q Consensus 117 l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~-~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~----------------~~~ 178 (225)
|.|+|++|++|+.+ ..|. ++|+.+..+. ....+++|++++++.+|.|||+|.|.+... ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57899999999988 6666 7777665542 123468999999999999999999998764 368
Q ss_pred EEEEEEEccCCCCCceeEEEEEECcccCCCCCCccccCeeEEcccCC
Q psy8342 179 LVFQVFDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRPRR 225 (225)
Q Consensus 179 L~v~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~prs 225 (225)
|.|+|||++.+++++|||++.++|.++...... ..||.|+|++
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~----~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSH----QAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcc----cceEecCCcC
Confidence 999999999998999999999999999855433 8999999874
No 48
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.74 E-value=2.5e-17 Score=125.99 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=87.2
Q ss_pred ccceeEeeeeeecCCcCCC------------------------------CCC-eeEEEEeCCCCccCcccCceecCCCCC
Q psy8342 114 TEQIRLRIIAGHSLAKKDI------------------------------FGA-RIDLNTVNGDQTIDSALTKTRKKTLNP 162 (225)
Q Consensus 114 ~~~l~v~vi~a~~L~~~d~------------------------------~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P 162 (225)
.|.|.|+|++|++|+.+|. .|. ++|+.+..+... ..+|++++++.||
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~--~~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGAR--VARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeE--eeEEEEeCCCCCC
Confidence 4889999999999999873 233 888888776432 4689999999999
Q ss_pred eeccEEEEEecCCCcEEEEEEEEccCCCCCceeEEEEEECcccCCCCCCccccCeeEEccc
Q psy8342 163 VWNEEFIFRVKPSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRP 223 (225)
Q Consensus 163 ~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~p 223 (225)
+|||+|.|.+......|.|.|||++.++ +++||++.++|+++..+... +.||+|.+
T Consensus 84 ~WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~----~~w~~L~~ 139 (158)
T cd04015 84 VWNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPV----EGWLPILD 139 (158)
T ss_pred ccceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCc----ceEEECcC
Confidence 9999999999877788999999999875 58999999999999876544 89999975
No 49
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.74 E-value=1.5e-17 Score=119.25 Aligned_cols=94 Identities=24% Similarity=0.314 Sum_probs=79.2
Q ss_pred cceeEeeeeeecCCcCCCC----CC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCC--cEEEEEEEEcc
Q psy8342 115 EQIRLRIIAGHSLAKKDIF----GA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSE--HKLVFQVFDMN 187 (225)
Q Consensus 115 ~~l~v~vi~a~~L~~~d~~----g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~--~~L~v~V~d~d 187 (225)
|.|.|+|++|++|+..+.. +. ++|+.+..+.. ++||+++++++||+|||+|.|.+.... ..|.|.|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~---~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRR---VFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCE---eEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 5689999999999987642 22 78887776632 579999999999999999999987543 57999999999
Q ss_pred CCCCCceeEEEEEECcccCCCCCC
Q psy8342 188 RLTRDDFLGMVELSLLNLPRESDG 211 (225)
Q Consensus 188 ~~~~d~~lG~~~i~l~~l~~~~~~ 211 (225)
.+++|++||++.++|++|..+...
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~~~ 101 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAAPQ 101 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhCCC
Confidence 999999999999999999876543
No 50
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.74 E-value=4.1e-17 Score=120.14 Aligned_cols=107 Identities=22% Similarity=0.228 Sum_probs=87.4
Q ss_pred ceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC-CcEEEEEEEEccCCCCCc
Q psy8342 116 QIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS-EHKLVFQVFDMNRLTRDD 193 (225)
Q Consensus 116 ~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~-~~~L~v~V~d~d~~~~d~ 193 (225)
.+.|+|++|++|+..+..|. ++|+.+..+......++|+++++++||.|||+|.|.+... ...|.|+|||++.+++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 57899999999999988777 7888776543323357999999999999999999999874 478999999999998999
Q ss_pred eeEEEEEECcccCCCC-CCccccCeeEEcccC
Q psy8342 194 FLGMVELSLLNLPRES-DGCVIHNKKYILRPR 224 (225)
Q Consensus 194 ~lG~~~i~l~~l~~~~-~~~~~~~~w~~L~pr 224 (225)
+||++.++|.++.... +. ....||.|.|.
T Consensus 82 ~iG~~~i~l~~~~~~~~~~--~~~~w~~l~~~ 111 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGL--PREIWLDLDTQ 111 (126)
T ss_pred eEEEEEEecCHHHcCCCCC--CceEEEEcCCC
Confidence 9999999999865432 11 12789999874
No 51
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.73 E-value=6.4e-17 Score=124.21 Aligned_cols=110 Identities=21% Similarity=0.268 Sum_probs=88.7
Q ss_pred CCCCccceeEeeeeeecCCcCCCCCC-eeEEEEeC--CCCccCcccCceecCCCCCeeccEEEEEecCC----CcEEEEE
Q psy8342 110 PEEPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVN--GDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS----EHKLVFQ 182 (225)
Q Consensus 110 ~~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~--~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~----~~~L~v~ 182 (225)
.....+.|.|+|++|+||+..+..|. ++|+.+.. +.....+++|+++++++||+|||+|.|.+... +..|.|+
T Consensus 22 ~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~ 101 (162)
T cd04020 22 KKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELT 101 (162)
T ss_pred cCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEE
Confidence 34467899999999999999987777 77776533 22233478999999999999999999986432 3579999
Q ss_pred EEEccCCCCCceeEEEEEECcccCCCCCCccccCeeEEccc
Q psy8342 183 VFDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRP 223 (225)
Q Consensus 183 V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~p 223 (225)
|||++.+++++|||++.+++.++...... ..||.|..
T Consensus 102 V~d~d~~~~d~~lG~v~i~l~~~~~~~~~----~~w~~~~~ 138 (162)
T cd04020 102 VWDHDKLSSNDFLGGVRLGLGTGKSYGQA----VDWMDSTG 138 (162)
T ss_pred EEeCCCCCCCceEEEEEEeCCccccCCCc----cccccCCh
Confidence 99999999999999999999998865443 78888753
No 52
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.73 E-value=4.8e-17 Score=118.91 Aligned_cols=102 Identities=25% Similarity=0.408 Sum_probs=87.9
Q ss_pred cceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEccCCCCCc
Q psy8342 115 EQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDD 193 (225)
Q Consensus 115 ~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~ 193 (225)
|.|.|+|++|++|+..+..|. ++|+.+..+.. .+++|++++++.||.|||+|.|.+......|.|+|||++.+++++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~--~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGI--VKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCE--EeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCC
Confidence 468999999999999988777 88887766532 358899999999999999999999887789999999999999999
Q ss_pred eeEEEEEECcccCCCCCCccccCeeEEccc
Q psy8342 194 FLGMVELSLLNLPRESDGCVIHNKKYILRP 223 (225)
Q Consensus 194 ~lG~~~i~l~~l~~~~~~~~~~~~w~~L~p 223 (225)
+||++.++|.++..+ .. ..||.|--
T Consensus 79 ~IG~~~~~l~~l~~~-~~----~~~~~~~~ 103 (120)
T cd04045 79 SLGSVEINVSDLIKK-NE----DGKYVEYD 103 (120)
T ss_pred eeeEEEEeHHHhhCC-CC----CceEEecC
Confidence 999999999999866 33 78888753
No 53
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.72 E-value=4.7e-17 Score=118.81 Aligned_cols=101 Identities=27% Similarity=0.407 Sum_probs=85.6
Q ss_pred cceeEeeeeeecCCcCCCC------CC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecC-CCcEEEEEEEEc
Q psy8342 115 EQIRLRIIAGHSLAKKDIF------GA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKP-SEHKLVFQVFDM 186 (225)
Q Consensus 115 ~~l~v~vi~a~~L~~~d~~------g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~-~~~~L~v~V~d~ 186 (225)
|.|.|+|++|++|+..+.. |. ++|+.+..+. ..++|++++++.||.|||+|.|.+.. ....|.|+|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~---~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA---QTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC---EeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 4689999999999988752 44 7888877764 36899999999999999999999975 357899999999
Q ss_pred cCCCCCceeEEEEEECcccCCCCCCccccCeeEEccc
Q psy8342 187 NRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRP 223 (225)
Q Consensus 187 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~p 223 (225)
+.. ++++||.+.++|.++...... ..||+|++
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~----~~w~~L~~ 109 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFI----DEWLPLED 109 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCcc----ceEEECcC
Confidence 988 889999999999999865333 89999986
No 54
>KOG0696|consensus
Probab=99.72 E-value=2.9e-18 Score=145.12 Aligned_cols=104 Identities=31% Similarity=0.522 Sum_probs=89.3
Q ss_pred ccceeEeeeeeecCCcCCCCCC-eeEEE--EeCCCCccCcccCceecCCCCCeeccEEEEEecCCC--cEEEEEEEEccC
Q psy8342 114 TEQIRLRIIAGHSLAKKDIFGA-RIDLN--TVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSE--HKLVFQVFDMNR 188 (225)
Q Consensus 114 ~~~l~v~vi~a~~L~~~d~~g~-~~~~~--~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~--~~L~v~V~d~d~ 188 (225)
...|.|.|.+|+||.++|.+|. ++|+. .........++||++++.++||+|||+|.|.+.+.+ +.|.|+|||||+
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr 258 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR 258 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence 4678899999999999999999 66664 444444556899999999999999999999998774 789999999999
Q ss_pred CCCCceeEEEEEECcccCCCCCCccccCeeEEcc
Q psy8342 189 LTRDDFLGMVELSLLNLPRESDGCVIHNKKYILR 222 (225)
Q Consensus 189 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 222 (225)
.+++||||...+.+++|.... . ++||.|.
T Consensus 259 TsRNDFMGslSFgisEl~K~p-~----~GWyKlL 287 (683)
T KOG0696|consen 259 TSRNDFMGSLSFGISELQKAP-V----DGWYKLL 287 (683)
T ss_pred cccccccceecccHHHHhhcc-h----hhHHHHh
Confidence 999999999999999998653 3 7899874
No 55
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.72 E-value=6e-17 Score=120.86 Aligned_cols=94 Identities=18% Similarity=0.318 Sum_probs=78.1
Q ss_pred CCCccceeEeeeeeecCCcCCCC--C-CeeEEEEeCCC--CccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEE
Q psy8342 111 EEPTEQIRLRIIAGHSLAKKDIF--G-ARIDLNTVNGD--QTIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQ 182 (225)
Q Consensus 111 ~~~~~~l~v~vi~a~~L~~~d~~--g-~~~~~~~~~~~--~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~ 182 (225)
....++|.|.|++|+||..++.. + .++|+.+.... .+..+.||+++++++||+|||+|.|.++.. +..|.|+
T Consensus 11 ~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~ 90 (138)
T cd08407 11 LPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELE 90 (138)
T ss_pred eCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEE
Confidence 34567899999999999999833 3 37777554433 445578999999999999999999999864 4789999
Q ss_pred EEEccCCCCCceeEEEEEECcc
Q psy8342 183 VFDMNRLTRDDFLGMVELSLLN 204 (225)
Q Consensus 183 V~d~d~~~~d~~lG~~~i~l~~ 204 (225)
|||+|.++++++||++.+++..
T Consensus 91 V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 91 VLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EEeCCCCcCcceeceEEecCcC
Confidence 9999999999999999999976
No 56
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.72 E-value=7.5e-17 Score=119.82 Aligned_cols=106 Identities=25% Similarity=0.328 Sum_probs=87.5
Q ss_pred ccceeEeeeeeecCCcCCCC----------CC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEE
Q psy8342 114 TEQIRLRIIAGHSLAKKDIF----------GA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQ 182 (225)
Q Consensus 114 ~~~l~v~vi~a~~L~~~d~~----------g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~ 182 (225)
.|.|+|+|++|++|...+.. |. ++|+.+..+... ..+|+++++++||.|||+|.|.+. ....|.|.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~--~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~ 79 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTH--IGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELT 79 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEE--EeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEE
Confidence 47799999999999988863 34 888888776432 368899999999999999999997 44689999
Q ss_pred EEEccCCCCCceeEEEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 183 VFDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 183 V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
|||++.++++++||++.++|.++..+.. .....||+|+|.
T Consensus 80 v~d~~~~~~~~~iG~~~i~l~~l~~~~~--~~~~~w~~L~~~ 119 (132)
T cd04014 80 VFHDAAIGPDDFVANCTISFEDLIQRGS--GSFDLWVDLEPQ 119 (132)
T ss_pred EEeCCCCCCCceEEEEEEEhHHhcccCC--CcccEEEEccCC
Confidence 9999998899999999999999987311 112899999875
No 57
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.72 E-value=1e-16 Score=118.15 Aligned_cols=100 Identities=24% Similarity=0.288 Sum_probs=84.7
Q ss_pred ccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEccCCCCC
Q psy8342 114 TEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRD 192 (225)
Q Consensus 114 ~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d 192 (225)
...++|+|++|++|...+..|. ++|+.+..+.. +++|++++++.||+|||.|.|.+......|.|+|||++.++ |
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~---~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~-d 77 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGE---SVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLC-D 77 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCE---EEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCC-C
Confidence 3568999999999999888877 88887766643 57999999999999999999998877789999999999874 8
Q ss_pred ceeEEEEEECcccCCCCCCccccCeeEEccc
Q psy8342 193 DFLGMVELSLLNLPRESDGCVIHNKKYILRP 223 (225)
Q Consensus 193 ~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~p 223 (225)
+|||.+.++++++... . ..||+|++
T Consensus 78 ~~lG~~~~~l~~~~~~--~----~~~~~l~~ 102 (126)
T cd04046 78 EFLGQATLSADPNDSQ--T----LRTLPLRK 102 (126)
T ss_pred CceEEEEEecccCCCc--C----ceEEEccc
Confidence 9999999999876422 1 68888864
No 58
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=8e-17 Score=121.91 Aligned_cols=104 Identities=20% Similarity=0.251 Sum_probs=84.7
Q ss_pred ceeEeeeeeecCCcCCCCC--------------C-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecC--CCcE
Q psy8342 116 QIRLRIIAGHSLAKKDIFG--------------A-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKP--SEHK 178 (225)
Q Consensus 116 ~l~v~vi~a~~L~~~d~~g--------------~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~--~~~~ 178 (225)
.|.|+|++|++|+.+|..+ . ++|+.+..+.. +.+|+++++++||+|||+|.|.+.. ....
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~---~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQ---KVKTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCE---eeecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 4789999999999988654 3 88888777653 4689999999999999999999753 3478
Q ss_pred EEEEEEEccCCCCCceeEEEEEECcccCCCCCC---ccccCeeEEcc
Q psy8342 179 LVFQVFDMNRLTRDDFLGMVELSLLNLPRESDG---CVIHNKKYILR 222 (225)
Q Consensus 179 L~v~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~---~~~~~~w~~L~ 222 (225)
|.|+|||+|..++|++||.+.++|.++...... ..+...||.|.
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly 124 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY 124 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence 999999999999999999999999998764321 11236888884
No 59
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.71 E-value=8.1e-17 Score=116.09 Aligned_cols=101 Identities=26% Similarity=0.380 Sum_probs=84.4
Q ss_pred ccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC-----CcEEEEEEEEcc
Q psy8342 114 TEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS-----EHKLVFQVFDMN 187 (225)
Q Consensus 114 ~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~-----~~~L~v~V~d~d 187 (225)
.+.|+|+|++|++|. .|. ++|+.+..+.. +++|+++++++||.|||+|.|.+... +..|.|+|||.+
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~---~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQ---KKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCE---eeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 478999999999998 344 78887777743 57899999999999999999998643 367999999999
Q ss_pred CCCCCceeEEEEEECcccCCCCCCccccCeeEEcc
Q psy8342 188 RLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILR 222 (225)
Q Consensus 188 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 222 (225)
.++++++||++.++|.++..+... .+..+||+|.
T Consensus 76 ~~~~~~~iG~~~i~l~~v~~~~~~-~~~~~w~~L~ 109 (111)
T cd04011 76 SLRSDTLIGSFKLDVGTVYDQPDH-AFLRKWLLLT 109 (111)
T ss_pred ccccCCccEEEEECCccccCCCCC-cceEEEEEee
Confidence 999999999999999999765433 4558999996
No 60
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.71 E-value=3.5e-17 Score=122.02 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=78.7
Q ss_pred CCCccceeEeeeeeecCCcCCCCCC-eeEEEEeC--CCCccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEEE
Q psy8342 111 EEPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVN--GDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVF 184 (225)
Q Consensus 111 ~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~--~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~ 184 (225)
......|.|.|++|+||+..+..|. ++|+.+.. +.....+.||+++++++||+|||+|.|.+... +..|.|+||
T Consensus 11 ~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~ 90 (136)
T cd08406 11 LPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVA 90 (136)
T ss_pred cCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEE
Confidence 3445789999999999999987777 77765544 32334467999999999999999999998753 478999999
Q ss_pred EccCCCCCceeEEEEEECcccC
Q psy8342 185 DMNRLTRDDFLGMVELSLLNLP 206 (225)
Q Consensus 185 d~d~~~~d~~lG~~~i~l~~l~ 206 (225)
|+|.++++++||++.|+.....
T Consensus 91 ~~d~~~~~~~iG~v~lg~~~~g 112 (136)
T cd08406 91 ESTEDGKTPNVGHVIIGPAASG 112 (136)
T ss_pred eCCCCCCCCeeEEEEECCCCCC
Confidence 9999999999999999876543
No 61
>KOG2059|consensus
Probab=99.70 E-value=5.4e-17 Score=143.78 Aligned_cols=206 Identities=19% Similarity=0.185 Sum_probs=148.1
Q ss_pred eeeeEEEEEEEEeecCCCCCccccccCcccCCCCCeEEEeCCCCceeecCC-----cccccCccccCCCCCCCceeee--
Q psy8342 4 KVKGFLELYHAYLRLSDHETNLEVSRHRESADPDSWIIVDASTESIVETPA-----QPLFIGGVEQQGALPPGWEERT-- 76 (225)
Q Consensus 4 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~LP~gwe~~~-- 76 (225)
||.-+|.+++. + ..|||+.+.++..|+ ||.|..++|.+.+|++ +| |||+++.-++|..|+...
T Consensus 2 ~~~~sl~vki~---E---~knL~~~~~~g~~D~--yC~v~lD~E~v~RT~tv~ksL~P--F~gEe~~~~iP~~F~~l~fY 71 (800)
T KOG2059|consen 2 RVEQSLKVKIG---E---AKNLPSYGPSGMRDC--YCTVNLDQEEVCRTATVEKSLCP--FFGEEFYFEIPRTFRYLSFY 71 (800)
T ss_pred ccccceeEEEe---e---cccCCCCCCCCCcCc--ceEEeecchhhhhhhhhhhhcCC--ccccceEEecCcceeeEEEE
Confidence 45556666654 2 357899889999998 9999999999999888 65 499999999999998761
Q ss_pred --eC-CCCcEEE-----------eeecceeeeccccccccCCCCC--------CCCCCCccceeEeeeeeecCCcCCCCC
Q psy8342 77 --DA-NGRTYYV-----------NHIARCTQWERPTVHHTMSSNN--------SAPEEPTEQIRLRIIAGHSLAKKDIFG 134 (225)
Q Consensus 77 --d~-~gr~~yv-----------~~~~~~~~w~~P~~~~~~~~~~--------~~~~~~~~~l~v~vi~a~~L~~~d~~g 134 (225)
|. .+|...| +++ +..+|...+.....+.+. .........+.+.++.++++.+.+..+
T Consensus 72 v~D~d~~~D~~IGKvai~re~l~~~~-~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~~~~ 150 (800)
T KOG2059|consen 72 VWDRDLKRDDIIGKVAIKREDLHMYP-GKDTWFSLQPVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPIINGQ 150 (800)
T ss_pred EeccccccccccceeeeeHHHHhhCC-CCccceeccccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCceeCCC
Confidence 11 2333332 233 567887766544332110 011223455667778888888877666
Q ss_pred CeeEEEEeC-CCCccCcccCceecCCCCCeeccEEEEEecCC----------------CcEEEEEEEE-ccCCCCCceeE
Q psy8342 135 ARIDLNTVN-GDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS----------------EHKLVFQVFD-MNRLTRDDFLG 196 (225)
Q Consensus 135 ~~~~~~~~~-~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~----------------~~~L~v~V~d-~d~~~~d~~lG 196 (225)
.++++.+.. |..+....+|++++++.+|.|+|.|.|.+... -..|++.+|+ ++.+..++|+|
T Consensus 151 ~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlG 230 (800)
T KOG2059|consen 151 CDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLG 230 (800)
T ss_pred CCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhce
Confidence 666665443 33333356899999999999999999998755 1568899998 77777799999
Q ss_pred EEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 197 MVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 197 ~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
++.+++..+...... ..||.|+||
T Consensus 231 evrv~v~~~~~~s~p----~~W~~Lqp~ 254 (800)
T KOG2059|consen 231 EVRVPVDVLRQKSSP----AAWYYLQPR 254 (800)
T ss_pred eEEeehhhhhhccCc----cceEEEecC
Confidence 999999998854443 899999997
No 62
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.70 E-value=1.5e-16 Score=120.64 Aligned_cols=104 Identities=30% Similarity=0.480 Sum_probs=85.5
Q ss_pred CCCCCccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCc--------------------------cCcccCceecCCCC
Q psy8342 109 APEEPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQT--------------------------IDSALTKTRKKTLN 161 (225)
Q Consensus 109 ~~~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~--------------------------~~~~kT~v~~~~~~ 161 (225)
+...+.+.|.|+|++|++|..+|.+|. ++|+.+..+... ...++|+++++++|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 345678999999999999999998887 777765543211 12478999999999
Q ss_pred CeeccEEEEEecCC-CcEEEEEEEEccCCCCCceeEEEEEECcccCCCCCCccccCeeEEc
Q psy8342 162 PVWNEEFIFRVKPS-EHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYIL 221 (225)
Q Consensus 162 P~Wne~f~f~v~~~-~~~L~v~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L 221 (225)
|.|||+|.|.+... ...|.|+|||++ ++|||++.++++++.. ... +.||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~----d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGL----DSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCC----CCeEeC
Confidence 99999999999764 478999999987 7899999999999983 333 899987
No 63
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.70 E-value=4.7e-17 Score=121.55 Aligned_cols=103 Identities=26% Similarity=0.432 Sum_probs=82.8
Q ss_pred CccceeEeeeeeecCCcCCCCCC-eeEEEEeC--CCCccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q psy8342 113 PTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVN--GDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVFDM 186 (225)
Q Consensus 113 ~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~--~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~d~ 186 (225)
..+.|.|+|++|++|+..+..|. ++|+.+.. +.....+.+|+++++++||.|||+|.|.+... ...|.|+|||+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~ 92 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDS 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence 45789999999999999998887 77776544 32333467899999999999999999998752 46789999999
Q ss_pred cCCCCCceeEEEEEECcccCCCCCCccccCeeEEc
Q psy8342 187 NRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYIL 221 (225)
Q Consensus 187 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L 221 (225)
+.++++++||++.+++... +.+. ..|+.|
T Consensus 93 d~~~~~~~iG~~~~~~~~~--~~~~----~~w~~l 121 (136)
T cd08404 93 DRVTKNEVIGRLVLGPKAS--GSGG----HHWKEV 121 (136)
T ss_pred CCCCCCccEEEEEECCcCC--CchH----HHHHHH
Confidence 9999999999999999983 3222 566655
No 64
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=2.1e-16 Score=114.50 Aligned_cols=103 Identities=30% Similarity=0.388 Sum_probs=87.0
Q ss_pred eeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC-CcEEEEEEEEccCCCCCce
Q psy8342 117 IRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS-EHKLVFQVFDMNRLTRDDF 194 (225)
Q Consensus 117 l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~-~~~L~v~V~d~d~~~~d~~ 194 (225)
|+|+|++|++|+..+..|. ++|+.+..+.. ..++|+++.++.+|+|||+|.|.+... ...|.|+|||++.++++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~--~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGE--KVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCC--cceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 5789999999999887766 77777665432 257999999999999999999999764 5789999999999999999
Q ss_pred eEEEEEECcccCCCCCCccccCeeEEcccCC
Q psy8342 195 LGMVELSLLNLPRESDGCVIHNKKYILRPRR 225 (225)
Q Consensus 195 lG~~~i~l~~l~~~~~~~~~~~~w~~L~prs 225 (225)
||++.+++.++..+... ..|++|.|++
T Consensus 79 iG~~~~~l~~l~~~~~~----~~~~~L~~~g 105 (115)
T cd04040 79 LGSAYIDLSDLEPEETT----ELTLPLDGQG 105 (115)
T ss_pred eEEEEEEHHHcCCCCcE----EEEEECcCCC
Confidence 99999999999875443 8999998764
No 65
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.70 E-value=2.2e-16 Score=117.75 Aligned_cols=106 Identities=25% Similarity=0.292 Sum_probs=82.7
Q ss_pred cceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC----------CcEEEEEE
Q psy8342 115 EQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS----------EHKLVFQV 183 (225)
Q Consensus 115 ~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~----------~~~L~v~V 183 (225)
++|+|+|++|++|+.+|..|. ++|+.+..+.. +++|+++++++||.|||+|.|.+... ...|.|+|
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~---~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V 77 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQ---SQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVEL 77 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCe---eeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEE
Confidence 468999999999999998887 88887766532 67899999999999999999985321 24689999
Q ss_pred EEccCCCCCceeEEEEE-ECcccCCCCCCccccCeeEEcccC
Q psy8342 184 FDMNRLTRDDFLGMVEL-SLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 184 ~d~d~~~~d~~lG~~~i-~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
||++.+++|+|||++.+ ++..+.... ......+||.|..+
T Consensus 78 ~d~d~~~~d~~iG~~~i~~~~~~~~~~-~~~~~~~W~~L~~~ 118 (135)
T cd04017 78 FDQDSVGKDEFLGRSVAKPLVKLDLEE-DFPPKLQWFPIYKG 118 (135)
T ss_pred EeCcCCCCCccceEEEeeeeeecccCC-CCCCCceEEEeecC
Confidence 99999999999999987 554444321 11223899999743
No 66
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.70 E-value=1.7e-16 Score=116.68 Aligned_cols=107 Identities=21% Similarity=0.331 Sum_probs=88.5
Q ss_pred ceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceec-CCCCCeeccEEEEEecCC-----CcEEEEEEEEccC
Q psy8342 116 QIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRK-KTLNPVWNEEFIFRVKPS-----EHKLVFQVFDMNR 188 (225)
Q Consensus 116 ~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~-~~~~P~Wne~f~f~v~~~-----~~~L~v~V~d~d~ 188 (225)
+|+|+|++|++|+..+..+. ++|+.+..+.. .+++|+++. ++.||.|||+|.|.+... ...|.|+|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~--~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPS--HKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCC--cccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 47899999999999887777 88887776641 267888875 689999999999999876 5789999999999
Q ss_pred CCCCceeEEEEEECcccCCCCCC-ccccCeeEEcccC
Q psy8342 189 LTRDDFLGMVELSLLNLPRESDG-CVIHNKKYILRPR 224 (225)
Q Consensus 189 ~~~d~~lG~~~i~l~~l~~~~~~-~~~~~~w~~L~pr 224 (225)
++++++||++.++|.++..+... ......||+|..+
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~ 115 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP 115 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC
Confidence 88999999999999999866432 1234799999864
No 67
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.70 E-value=1.5e-16 Score=118.39 Aligned_cols=96 Identities=28% Similarity=0.411 Sum_probs=80.5
Q ss_pred CccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCC----ccCcccCceecCCCCCeeccEEEEEecCC-----CcEEEEE
Q psy8342 113 PTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQ----TIDSALTKTRKKTLNPVWNEEFIFRVKPS-----EHKLVFQ 182 (225)
Q Consensus 113 ~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~----~~~~~kT~v~~~~~~P~Wne~f~f~v~~~-----~~~L~v~ 182 (225)
....|.|.|++|++|+..+..|. ++|+.+..... ...+++|+++++++||+|||+|.|.+... ...|.|+
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 45679999999999999887777 77776654322 13478999999999999999999998752 3689999
Q ss_pred EEEccCCCCCceeEEEEEECcccCCC
Q psy8342 183 VFDMNRLTRDDFLGMVELSLLNLPRE 208 (225)
Q Consensus 183 V~d~d~~~~d~~lG~~~i~l~~l~~~ 208 (225)
|||++.+++++|||++.++|+++..-
T Consensus 94 V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 94 VKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 99999999999999999999999844
No 68
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.69 E-value=3e-16 Score=115.84 Aligned_cols=97 Identities=19% Similarity=0.275 Sum_probs=77.7
Q ss_pred CCCCccceeEeeeeeecCCcCCCCCC-eeEE--EEeCCCCccCcccCceecCCC-CCeeccEEEEEecCCC--cEEEEEE
Q psy8342 110 PEEPTEQIRLRIIAGHSLAKKDIFGA-RIDL--NTVNGDQTIDSALTKTRKKTL-NPVWNEEFIFRVKPSE--HKLVFQV 183 (225)
Q Consensus 110 ~~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~--~~~~~~~~~~~~kT~v~~~~~-~P~Wne~f~f~v~~~~--~~L~v~V 183 (225)
.....++|.|.|++|+||+.++..+. ++|+ .+..+.....+.||+++++++ +|+|||+|.|++.... ..|.|+|
T Consensus 9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v 88 (135)
T cd08692 9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL 88 (135)
T ss_pred ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence 45567889999999999998744333 5555 344444556789999999995 6999999999998653 5688999
Q ss_pred EEccCCCCCceeEEEEEECcccC
Q psy8342 184 FDMNRLTRDDFLGMVELSLLNLP 206 (225)
Q Consensus 184 ~d~d~~~~d~~lG~~~i~l~~l~ 206 (225)
||++.++++++||++.++.++..
T Consensus 89 ~d~~~~~~n~~IG~v~lG~~~~~ 111 (135)
T cd08692 89 YSRSSVRRKHFLGQVWISSDSSS 111 (135)
T ss_pred EeCCCCcCCceEEEEEECCccCC
Confidence 99999999999999999998743
No 69
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.69 E-value=1e-16 Score=119.23 Aligned_cols=106 Identities=24% Similarity=0.251 Sum_probs=84.8
Q ss_pred CCCccceeEeeeeeecCCcCCCCCC-eeEEEEeCCC--CccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEEE
Q psy8342 111 EEPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGD--QTIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVF 184 (225)
Q Consensus 111 ~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~--~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~ 184 (225)
....+.|.|+|++|++|+..+..|. ++|+.+.... ....+.+|+++++++||+|||+|.|.+... ...|.|+||
T Consensus 9 ~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~ 88 (133)
T cd08384 9 NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVW 88 (133)
T ss_pred cCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence 3457899999999999999988777 7777554432 223468999999999999999999998754 368999999
Q ss_pred EccCCCCCceeEEEEEECcccCCCCCCccccCeeEEcc
Q psy8342 185 DMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILR 222 (225)
Q Consensus 185 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 222 (225)
|++..+++++||++.+++.... ... ..||.+.
T Consensus 89 d~d~~~~~~~lG~~~i~l~~~~--~~~----~~W~~~l 120 (133)
T cd08384 89 DKDIGKSNDYIGGLQLGINAKG--ERL----RHWLDCL 120 (133)
T ss_pred eCCCCCCccEEEEEEEecCCCC--chH----HHHHHHH
Confidence 9999999999999999998632 222 6777664
No 70
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.69 E-value=1.8e-16 Score=119.33 Aligned_cols=90 Identities=32% Similarity=0.528 Sum_probs=80.6
Q ss_pred cceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEccCCCCCc
Q psy8342 115 EQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDD 193 (225)
Q Consensus 115 ~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~ 193 (225)
|.|.|+|++|++|+..+. +. ++|+.+..+.. +.+|+++++++||+|||+|.|.+......|.|+|||++.+++|+
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~---~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd 77 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQ---KVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDD 77 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCE---EEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCC
Confidence 679999999999998887 55 88888777643 68999999999999999999999988889999999999999999
Q ss_pred eeEEEEEECcccCCC
Q psy8342 194 FLGMVELSLLNLPRE 208 (225)
Q Consensus 194 ~lG~~~i~l~~l~~~ 208 (225)
+||.+.++|.++...
T Consensus 78 ~iG~a~i~l~~l~~~ 92 (145)
T cd04038 78 SMGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEEEHHHhhhh
Confidence 999999999987644
No 71
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.69 E-value=4.9e-16 Score=114.30 Aligned_cols=95 Identities=22% Similarity=0.265 Sum_probs=79.7
Q ss_pred CCCCCccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecC--CCcEEEEEEEE
Q psy8342 109 APEEPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKP--SEHKLVFQVFD 185 (225)
Q Consensus 109 ~~~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~--~~~~L~v~V~d 185 (225)
......++|.|+|++|++|+. +..|. ++|+.+..+.. +++|+++++++||+|||+|.|.... ....|.|+|||
T Consensus 22 ~~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D 97 (127)
T cd04032 22 PTRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQ---EKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWD 97 (127)
T ss_pred cCcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCc---cccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEe
Confidence 345677999999999999984 55555 88887776643 7899999999999999999997543 35789999999
Q ss_pred ccCCCCCceeEEEEEECcccCC
Q psy8342 186 MNRLTRDDFLGMVELSLLNLPR 207 (225)
Q Consensus 186 ~d~~~~d~~lG~~~i~l~~l~~ 207 (225)
++.+++|++||++.++|.....
T Consensus 98 ~d~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 98 RDNGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCCCCCCeeEEEEEEecCCce
Confidence 9999999999999999996653
No 72
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.68 E-value=4.6e-16 Score=116.17 Aligned_cols=94 Identities=32% Similarity=0.514 Sum_probs=78.6
Q ss_pred CCccceeEeeeeeecCCcCCCCCC-eeEEEEeC--CCCccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q psy8342 112 EPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVN--GDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVFD 185 (225)
Q Consensus 112 ~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~--~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~d 185 (225)
...+.|.|+|++|++|+..+..|. ++|+.+.. +.....+.+|+++++++||+|||+|.|.+... +..|.|+|||
T Consensus 12 ~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d 91 (136)
T cd08405 12 PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence 346889999999999999888777 77775543 33333467999999999999999999998642 3689999999
Q ss_pred ccCCCCCceeEEEEEECccc
Q psy8342 186 MNRLTRDDFLGMVELSLLNL 205 (225)
Q Consensus 186 ~d~~~~d~~lG~~~i~l~~l 205 (225)
++.++++++||++.+++.+.
T Consensus 92 ~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 92 KDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCCCcEeEEEEECCccC
Confidence 99999999999999999886
No 73
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.68 E-value=8.3e-17 Score=120.17 Aligned_cols=95 Identities=25% Similarity=0.367 Sum_probs=78.9
Q ss_pred CCCccceeEeeeeeecCCcCCCCCC-eeEEEEeCC--CCccCcccCceecCCCCCeeccEEEEEecCCC---cEEEEEEE
Q psy8342 111 EEPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNG--DQTIDSALTKTRKKTLNPVWNEEFIFRVKPSE---HKLVFQVF 184 (225)
Q Consensus 111 ~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~--~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~---~~L~v~V~ 184 (225)
....+.|.|.|++|++|+.++..|. ++|+.+... .....+++|+++++++||.|||+|.|.+.... ..|.|+||
T Consensus 11 ~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~ 90 (136)
T cd08402 11 VPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVL 90 (136)
T ss_pred cCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 3456889999999999999988777 777765543 22334678999999999999999999987542 47999999
Q ss_pred EccCCCCCceeEEEEEECccc
Q psy8342 185 DMNRLTRDDFLGMVELSLLNL 205 (225)
Q Consensus 185 d~d~~~~d~~lG~~~i~l~~l 205 (225)
|++.+++++|||++.|++...
T Consensus 91 d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 91 DYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred eCCCCCCCceeEEEEECCccC
Confidence 999999999999999999874
No 74
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.67 E-value=7.3e-17 Score=120.71 Aligned_cols=97 Identities=21% Similarity=0.352 Sum_probs=80.7
Q ss_pred CCCCccceeEeeeeeecCCcCCCCCC-eeEEEEeCCC--C-ccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEE
Q psy8342 110 PEEPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGD--Q-TIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQ 182 (225)
Q Consensus 110 ~~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~--~-~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~ 182 (225)
.....++|.|+|++|+||+.++..|. ++|+.+.... . ...++||+++++++||+|||+|.|.+... +..|.|+
T Consensus 10 Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~ 89 (138)
T cd08408 10 YNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFS 89 (138)
T ss_pred EcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEE
Confidence 34567899999999999999988877 7777654432 1 23467999999999999999999999753 3689999
Q ss_pred EEEccCCCCCceeEEEEEECcccC
Q psy8342 183 VFDMNRLTRDDFLGMVELSLLNLP 206 (225)
Q Consensus 183 V~d~d~~~~d~~lG~~~i~l~~l~ 206 (225)
|||.+.++++++||++.+++....
T Consensus 90 V~~~~~~~~~~~iG~v~l~~~~~~ 113 (138)
T cd08408 90 VYNKRKMKRKEMIGWFSLGLNSSG 113 (138)
T ss_pred EEECCCCCCCcEEEEEEECCcCCC
Confidence 999999999999999999988655
No 75
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.67 E-value=1.1e-16 Score=119.31 Aligned_cols=106 Identities=22% Similarity=0.339 Sum_probs=82.0
Q ss_pred CCccceeEeeeeeecCCcCCCCCC-eeEEEEeC--CCCccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q psy8342 112 EPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVN--GDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVFD 185 (225)
Q Consensus 112 ~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~--~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~d 185 (225)
...+.|.|+|++|++|+..+..|. ++|+.+.. +.....+++|+++++++||+|||+|.|.+... +..|.|+|||
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d 90 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG 90 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence 445789999999999999998877 77776654 32333467999999999999999999998643 2479999999
Q ss_pred ccCCCCCceeEEEEEECcccCCCCCCccccCeeEEcc
Q psy8342 186 MNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILR 222 (225)
Q Consensus 186 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 222 (225)
++..+++++||++.|........ .. ..|+.|.
T Consensus 91 ~d~~~~~~~iG~~~l~~~~~~~~-~~----~~W~~l~ 122 (135)
T cd08410 91 HNVKSSNDFIGRIVIGQYSSGPS-ET----NHWRRML 122 (135)
T ss_pred CCCCCCCcEEEEEEEcCccCCch-HH----HHHHHHH
Confidence 99999999999998765444321 11 5566554
No 76
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.66 E-value=1e-15 Score=114.08 Aligned_cols=106 Identities=24% Similarity=0.292 Sum_probs=82.7
Q ss_pred eeEeeeeeecCCcCCCCCC-eeEEEEeCCCCc----------cCcccCceecCCCCCee-ccEEEEEecCCCcEEEEEEE
Q psy8342 117 IRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQT----------IDSALTKTRKKTLNPVW-NEEFIFRVKPSEHKLVFQVF 184 (225)
Q Consensus 117 l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~----------~~~~kT~v~~~~~~P~W-ne~f~f~v~~~~~~L~v~V~ 184 (225)
..|.+++|++|+ ++..|. ++|+.+...... ..+++|+++++++||+| ||+|.|.+.. ...|.|+||
T Consensus 3 ~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V~ 80 (137)
T cd08691 3 FSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEVK 80 (137)
T ss_pred EEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEEE
Confidence 568899999998 677777 777765443222 23689999999999999 9999999964 458999999
Q ss_pred EccCCCC---CceeEEEEEECcccCCCCCCccccCeeEEcccCC
Q psy8342 185 DMNRLTR---DDFLGMVELSLLNLPRESDGCVIHNKKYILRPRR 225 (225)
Q Consensus 185 d~d~~~~---d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~prs 225 (225)
|++..++ +++||++.++|.++..+... .....||+|++||
T Consensus 81 D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~-~~~~~~~~l~k~~ 123 (137)
T cd08691 81 DKFAKSRPIIRRFLGKLSIPVQRLLERHAI-GDQELSYTLGRRT 123 (137)
T ss_pred ecCCCCCccCCceEEEEEEEHHHhcccccC-CceEEEEECCcCC
Confidence 9875443 79999999999999765322 1137899999875
No 77
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.66 E-value=4.4e-16 Score=113.78 Aligned_cols=101 Identities=23% Similarity=0.281 Sum_probs=81.9
Q ss_pred eeeeeecCCcCCCCCC-eeEEEEeCCCCc----cCcccCceecCCCCCeeccEEEEEecC-CCcEEEEEEEEccC----C
Q psy8342 120 RIIAGHSLAKKDIFGA-RIDLNTVNGDQT----IDSALTKTRKKTLNPVWNEEFIFRVKP-SEHKLVFQVFDMNR----L 189 (225)
Q Consensus 120 ~vi~a~~L~~~d~~g~-~~~~~~~~~~~~----~~~~kT~v~~~~~~P~Wne~f~f~v~~-~~~~L~v~V~d~d~----~ 189 (225)
-.++|++|+..+..|. ++|+.+...... ...++|+++++++||+|||+|.|.+.. ....|.|+|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 4588999999998887 777766554332 225899999999999999999998653 34679999999997 7
Q ss_pred CCCceeEEEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 190 TRDDFLGMVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 190 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
+++++||++.+++++|...... ..||.|.|+
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~----~~~~~l~~~ 115 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQ----KLTLPLKGG 115 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCc----EEEEEccCC
Confidence 8999999999999999866544 789998664
No 78
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.66 E-value=8.8e-16 Score=113.86 Aligned_cols=104 Identities=31% Similarity=0.464 Sum_probs=86.3
Q ss_pred cceeEeeeeeecCCcCCCCCC-eeEEEEeCCC--CccCcccCceecCCCCCeeccEEEEEecCC--CcEEEEEEEEccCC
Q psy8342 115 EQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGD--QTIDSALTKTRKKTLNPVWNEEFIFRVKPS--EHKLVFQVFDMNRL 189 (225)
Q Consensus 115 ~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~--~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~--~~~L~v~V~d~d~~ 189 (225)
+.|.|+|++|++|+..+..+. ++|+.+.... ....+++|++++++.+|.|||+|.|.+... ...|.|+|||.+.+
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 789999999999998887776 6766554432 122368999999999999999999998764 46899999999998
Q ss_pred CCCceeEEEEEECcccCCCCCCccccCeeEEccc
Q psy8342 190 TRDDFLGMVELSLLNLPRESDGCVIHNKKYILRP 223 (225)
Q Consensus 190 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~p 223 (225)
+++++||++.++|.++... .. ..||.|..
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~----~~w~~L~~ 121 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PV----DGWYKLLN 121 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-cc----CceEECcC
Confidence 8999999999999999854 33 89999974
No 79
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.66 E-value=2.5e-16 Score=117.33 Aligned_cols=94 Identities=24% Similarity=0.414 Sum_probs=77.6
Q ss_pred CCccceeEeeeeeecCCcCCCCCC-eeEEEEeCC--CCccCcccCceecCCCCCeeccEEEEEecCCC---cEEEEEEEE
Q psy8342 112 EPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNG--DQTIDSALTKTRKKTLNPVWNEEFIFRVKPSE---HKLVFQVFD 185 (225)
Q Consensus 112 ~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~--~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~---~~L~v~V~d 185 (225)
...+.|.|+|++|++|+.++..|. ++|+.+... .....+.+|+++++++||+|||+|.|.+.... ..|.|+|||
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 456889999999999999998887 777755542 22334678999999999999999999986432 469999999
Q ss_pred ccCCCCCceeEEEEEECccc
Q psy8342 186 MNRLTRDDFLGMVELSLLNL 205 (225)
Q Consensus 186 ~d~~~~d~~lG~~~i~l~~l 205 (225)
++.+++++|||++.+++...
T Consensus 91 ~~~~~~~~~IG~~~l~~~~~ 110 (134)
T cd08403 91 YDRVGHNELIGVCRVGPNAD 110 (134)
T ss_pred CCCCCCCceeEEEEECCCCC
Confidence 99999999999999998743
No 80
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=1.2e-15 Score=112.63 Aligned_cols=95 Identities=23% Similarity=0.297 Sum_probs=80.1
Q ss_pred eeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEEEEccCCCCCceeE
Q psy8342 121 IIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVFDMNRLTRDDFLG 196 (225)
Q Consensus 121 vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~d~d~~~~d~~lG 196 (225)
|++|++|+. ..|. ++|+.+..+.. +++|++++++.||+|||+|.|.+... ...|.|+|||++.++++++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~---~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGV---KKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCE---eeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 688999988 4555 88887766543 57999999999999999999999753 578999999999999999999
Q ss_pred EEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 197 MVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 197 ~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
++.++|+++..+... ..|++|.++
T Consensus 77 ~~~~~l~~l~~~~~~----~~~~~L~~~ 100 (127)
T cd08373 77 SATVSLQDLVSEGLL----EVTEPLLDS 100 (127)
T ss_pred EEEEEhhHcccCCce----EEEEeCcCC
Confidence 999999999876443 789999754
No 81
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=1.5e-15 Score=111.60 Aligned_cols=90 Identities=23% Similarity=0.294 Sum_probs=77.4
Q ss_pred eeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC-CcEEEEEEEEccCCCCCce
Q psy8342 117 IRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS-EHKLVFQVFDMNRLTRDDF 194 (225)
Q Consensus 117 l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~-~~~L~v~V~d~d~~~~d~~ 194 (225)
|+|.|++|++|+..+..|. ++|+.+..+... .+.+|+++++++||+|||+|.|.+... ...|.|+|||++.++++++
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~-~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKK-INDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCee-ccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 7899999999999998877 888887776543 246788899999999999999998644 4789999999999999999
Q ss_pred eEEEEEECcccCC
Q psy8342 195 LGMVELSLLNLPR 207 (225)
Q Consensus 195 lG~~~i~l~~l~~ 207 (225)
||++.++|++..-
T Consensus 81 iG~~~i~l~~~~~ 93 (124)
T cd04037 81 IGETVIDLEDRFF 93 (124)
T ss_pred eEEEEEeeccccc
Confidence 9999999987763
No 82
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=1.7e-15 Score=111.07 Aligned_cols=95 Identities=27% Similarity=0.397 Sum_probs=80.7
Q ss_pred cceeEeeeeeecCCcCCC-CCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEccCCCCC
Q psy8342 115 EQIRLRIIAGHSLAKKDI-FGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRD 192 (225)
Q Consensus 115 ~~l~v~vi~a~~L~~~d~-~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d 192 (225)
|.|.|+|++|++|+..+. .+. ++|+.+..+.. ...++|++++++.||.|||.|.|.+......|.|+|||.+..+++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence 679999999999997653 344 78887776642 236899999999999999999999986678999999999999899
Q ss_pred ceeEEEEEECcccCCCCC
Q psy8342 193 DFLGMVELSLLNLPRESD 210 (225)
Q Consensus 193 ~~lG~~~i~l~~l~~~~~ 210 (225)
++||.+.++|.++.....
T Consensus 81 ~~iG~~~~~l~~l~~~~~ 98 (124)
T cd04044 81 KLIGTAEFDLSSLLQNPE 98 (124)
T ss_pred ceeEEEEEEHHHhccCcc
Confidence 999999999999986644
No 83
>KOG1028|consensus
Probab=99.64 E-value=9.8e-16 Score=133.87 Aligned_cols=113 Identities=29% Similarity=0.352 Sum_probs=96.8
Q ss_pred CCCCCccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEEE
Q psy8342 109 APEEPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVF 184 (225)
Q Consensus 109 ~~~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~ 184 (225)
.+......|.|+|++|++|+.++..|. ++|+.+....++..+.+|+++++++||+|||+|.|.|... ...|.+.||
T Consensus 161 ~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~ 240 (421)
T KOG1028|consen 161 QYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVY 240 (421)
T ss_pred EecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEE
Confidence 345567899999999999999995555 7777766666666789999999999999999999997654 489999999
Q ss_pred EccCCCCCceeEEEEEECcccCCCCCCccccCeeEEcccCC
Q psy8342 185 DMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRPRR 225 (225)
Q Consensus 185 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~prs 225 (225)
|+|+++++++||++.++|..+...... ..|+.|.+++
T Consensus 241 ~~drfsr~~~iGev~~~l~~~~~~~~~----~~w~~l~~~~ 277 (421)
T KOG1028|consen 241 DFDRFSRHDFIGEVILPLGEVDLLSTT----LFWKDLQPSS 277 (421)
T ss_pred ecCCcccccEEEEEEecCccccccccc----eeeecccccc
Confidence 999999999999999999998877553 7899998863
No 84
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.63 E-value=4.2e-16 Score=116.50 Aligned_cols=96 Identities=17% Similarity=0.316 Sum_probs=77.3
Q ss_pred CCccceeEeeeeeecCCcCCCCCC-eeEEEEeC--CCCccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEEEE
Q psy8342 112 EPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVN--GDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVFD 185 (225)
Q Consensus 112 ~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~--~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~d 185 (225)
...++|.|.|++|+||+..+ .+. ++|+.+.+ +.....+++|+++++++||+|||+|.|.+... ...|.|+|||
T Consensus 12 ~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~ 90 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQ 90 (137)
T ss_pred CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEe
Confidence 34578999999999999888 554 77775543 32233467999999999999999999999743 3689999999
Q ss_pred ccCCCCCceeEEEEEECcccCCC
Q psy8342 186 MNRLTRDDFLGMVELSLLNLPRE 208 (225)
Q Consensus 186 ~d~~~~d~~lG~~~i~l~~l~~~ 208 (225)
.+.++++++||++.|+......+
T Consensus 91 ~~~~~~~~~lG~v~ig~~~~~~~ 113 (137)
T cd08409 91 SGGVRKSKLLGRVVLGPFMYARG 113 (137)
T ss_pred CCCCCCcceEEEEEECCcccCCC
Confidence 99999999999999997655544
No 85
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.63 E-value=1.9e-15 Score=113.43 Aligned_cols=102 Identities=19% Similarity=0.287 Sum_probs=84.6
Q ss_pred CccceeEeeeeeecCCcCCCCCCeeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEccC-CC-
Q psy8342 113 PTEQIRLRIIAGHSLAKKDIFGARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNR-LT- 190 (225)
Q Consensus 113 ~~~~l~v~vi~a~~L~~~d~~g~~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~-~~- 190 (225)
-...|.|.|++|++|+.++ ++|+.+.++... ..+|+++.++.||.|+|.|.|.....-..|.|.||+.+. .+
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld~~~--vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~ 82 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK----RYYCELCLDKTL--YARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKK 82 (146)
T ss_pred EEEEEEEEEEEccCCCCcC----CceEEEEECCEE--EEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccc
Confidence 4567899999999999876 678888777543 469999999999999999999877666789999986543 22
Q ss_pred --CCceeEEEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 191 --RDDFLGMVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 191 --~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
++++||.+.||+.++..+... ++||+|.+.
T Consensus 83 ~~~~~~IG~V~Ip~~~l~~~~~v----e~Wfpl~~~ 114 (146)
T cd04013 83 KDKSQLIGTVNIPVTDVSSRQFV----EKWYPVSTP 114 (146)
T ss_pred ccCCcEEEEEEEEHHHhcCCCcc----cEEEEeecC
Confidence 578999999999999977665 999999864
No 86
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.63 E-value=4.9e-15 Score=112.28 Aligned_cols=102 Identities=23% Similarity=0.253 Sum_probs=79.5
Q ss_pred eeEeeeeeec--CCcCCCCCC-eeEEEEeC--CCCccCcccCceecCCCCCeeccEEEEEecCC---------CcEEEEE
Q psy8342 117 IRLRIIAGHS--LAKKDIFGA-RIDLNTVN--GDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS---------EHKLVFQ 182 (225)
Q Consensus 117 l~v~vi~a~~--L~~~d~~g~-~~~~~~~~--~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---------~~~L~v~ 182 (225)
..++|..|++ |+..+..+. ++|+.+.. ......+.||+++++++||+|||+|.|.+... ...|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4456666666 666665555 77775532 33445589999999999999999999999754 2579999
Q ss_pred EEEccCC-CCCceeEEEEEECcccCCCCCCccccCeeEEcc
Q psy8342 183 VFDMNRL-TRDDFLGMVELSLLNLPRESDGCVIHNKKYILR 222 (225)
Q Consensus 183 V~d~d~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 222 (225)
|||.+.+ .+|++||++.++|..+...... ..||+|.
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~----~~~~~L~ 120 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEI----HESVDLM 120 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcc----eEEEEhh
Confidence 9999986 5799999999999999876654 6688876
No 87
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.63 E-value=5.9e-16 Score=114.99 Aligned_cols=105 Identities=24% Similarity=0.306 Sum_probs=84.4
Q ss_pred CccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCC--ccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEEEEc
Q psy8342 113 PTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQ--TIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVFDM 186 (225)
Q Consensus 113 ~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~--~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~d~ 186 (225)
..+.|.|.|++|++|+..+..+. ++|+.+..... ...+++|++++++.||.|||+|.|.+... ...|.|+|||.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 35789999999999999886666 77776544322 23367999999999999999999998764 47899999999
Q ss_pred cCCCCCceeEEEEEECcccCCCCCCccccCeeEEccc
Q psy8342 187 NRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRP 223 (225)
Q Consensus 187 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~p 223 (225)
+.++++++||.+.++|++ .+... ..||.|..
T Consensus 92 ~~~~~~~~lG~~~i~l~~--~~~~~----~~W~~l~~ 122 (134)
T cd00276 92 DSVGRNEVIGQVVLGPDS--GGEEL----EHWNEMLA 122 (134)
T ss_pred CCCCCCceeEEEEECCCC--CCcHH----HHHHHHHh
Confidence 998899999999999999 33333 67777653
No 88
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.60 E-value=1.5e-14 Score=106.04 Aligned_cols=96 Identities=26% Similarity=0.330 Sum_probs=78.0
Q ss_pred CccceeEeeeeeecCCcCCCCCC-eeEEEEeC--CCCccCcccCceecCCCCCeeccEEEEEecCC----CcEEEEEEEE
Q psy8342 113 PTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVN--GDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS----EHKLVFQVFD 185 (225)
Q Consensus 113 ~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~--~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~----~~~L~v~V~d 185 (225)
..+.|.|+|++|++|+..+..+. ++|+.+.. +.....+.+|+++++++||+|||+|.|..... ...|.|+|||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 45789999999999998887776 66665543 22223468999999999999999999963322 3689999999
Q ss_pred ccCCCCCceeEEEEEECcccCCCC
Q psy8342 186 MNRLTRDDFLGMVELSLLNLPRES 209 (225)
Q Consensus 186 ~d~~~~d~~lG~~~i~l~~l~~~~ 209 (225)
.+.+ .+++||++.++|++|..+.
T Consensus 93 ~~~~-~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 93 EDRF-GNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred cCCc-CCeeEEEEEEEcccCCCCc
Confidence 9988 8899999999999999764
No 89
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.57 E-value=3.7e-14 Score=104.36 Aligned_cols=103 Identities=25% Similarity=0.381 Sum_probs=81.4
Q ss_pred cceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEccCCCCCc
Q psy8342 115 EQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDD 193 (225)
Q Consensus 115 ~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~ 193 (225)
.+|.|+|++|+ |...+..+. ++|+.+..+.. ...+|++++++++|+|||+|.|.+.. ...|.|+|||++.++.++
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~ 77 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADV 77 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCc
Confidence 46899999998 544544555 88887766643 36899999999999999999999864 468999999999999999
Q ss_pred eeEEEEEECcccCCCCCCcccc--CeeEEcc
Q psy8342 194 FLGMVELSLLNLPRESDGCVIH--NKKYILR 222 (225)
Q Consensus 194 ~lG~~~i~l~~l~~~~~~~~~~--~~w~~L~ 222 (225)
+||++.++|.++...... ... ..|+.|.
T Consensus 78 ~iG~~~i~l~~l~~~~~~-~~~~~~~~~~~~ 107 (125)
T cd04021 78 LLGEASLDLSDILKNHNG-KLENVKLTLNLS 107 (125)
T ss_pred EEEEEEEEHHHhHhhcCC-CccceEEEEEEE
Confidence 999999999998754322 111 3588886
No 90
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.57 E-value=2.4e-14 Score=103.89 Aligned_cols=96 Identities=33% Similarity=0.456 Sum_probs=73.1
Q ss_pred eeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEEEEccCCCCC
Q psy8342 117 IRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVFDMNRLTRD 192 (225)
Q Consensus 117 l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~d~d~~~~d 192 (225)
|.|+|++|++|+.. |. ++|+.+..+.. ..++|+++++ .||.|||+|.|.+... ...|.|.+||.+..+++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~--~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQV--EVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCE--EeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999976 44 78887776642 2478999988 9999999999999874 35678888888876666
Q ss_pred ceeEEEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 193 DFLGMVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 193 ~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
.++|.+.| ..+..+... ..||+|+|+
T Consensus 76 ~~~g~v~l--~~~~~~~~~----~~w~~L~~~ 101 (117)
T cd08383 76 IVIGKVAL--SKLDLGQGK----DEWFPLTPV 101 (117)
T ss_pred eEEEEEEe--cCcCCCCcc----eeEEECccC
Confidence 66676554 444443333 899999985
No 91
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.57 E-value=2.2e-14 Score=103.31 Aligned_cols=83 Identities=17% Similarity=0.292 Sum_probs=67.1
Q ss_pred eeEeeeeeecCCcCCCCCCeeEEEEeCCCC--ccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEc-------c
Q psy8342 117 IRLRIIAGHSLAKKDIFGARIDLNTVNGDQ--TIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDM-------N 187 (225)
Q Consensus 117 l~v~vi~a~~L~~~d~~g~~~~~~~~~~~~--~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~-------d 187 (225)
|.|+|.+|+||+.. .++|+.+..... ...+.+|+++++++||+|||+|.|.+.. ...|.+.|||+ |
T Consensus 1 L~V~V~~A~~L~~~----sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFKQS----ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCCCC----CCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccccccc
Confidence 67999999999632 277887744332 1347899999999999999999999975 67999999998 5
Q ss_pred CCCCCceeEEEEEECcc
Q psy8342 188 RLTRDDFLGMVELSLLN 204 (225)
Q Consensus 188 ~~~~d~~lG~~~i~l~~ 204 (225)
..++|++||.+.+.|+.
T Consensus 76 ~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 76 GEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccCcccEEEEEEEEECH
Confidence 67889999888888763
No 92
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.56 E-value=4.3e-14 Score=104.10 Aligned_cols=101 Identities=31% Similarity=0.349 Sum_probs=79.5
Q ss_pred cceeEeeeeeecCCcCC--CCCC-eeEEEEeCCCC---ccCcccCceecCCC-CCeeccEEEEEecCCC-cEEEEEEEEc
Q psy8342 115 EQIRLRIIAGHSLAKKD--IFGA-RIDLNTVNGDQ---TIDSALTKTRKKTL-NPVWNEEFIFRVKPSE-HKLVFQVFDM 186 (225)
Q Consensus 115 ~~l~v~vi~a~~L~~~d--~~g~-~~~~~~~~~~~---~~~~~kT~v~~~~~-~P~Wne~f~f~v~~~~-~~L~v~V~d~ 186 (225)
..|+|+|++|++|+..+ ..+. ++|+.+..... ...+++|+++.++. ||.|||+|.|.+...+ ..|.|+|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 46899999999999887 3444 66665443211 23468899988765 9999999999988654 5689999999
Q ss_pred cCCCCCceeEEEEEECcccCCCCCCccccCeeEEccc
Q psy8342 187 NRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRP 223 (225)
Q Consensus 187 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~p 223 (225)
+.. ++++||++.++|++|..+ ..|++|..
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~g-------~~~~~l~~ 110 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQG-------YRHVPLLD 110 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcCc-------eEEEEecC
Confidence 988 899999999999999755 56788764
No 93
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.55 E-value=2.9e-14 Score=102.42 Aligned_cols=90 Identities=27% Similarity=0.410 Sum_probs=72.9
Q ss_pred eEeeeeeecCCcCCCCCC-eeEEEEeCCCC---ccCcccCceecCCCCCeeccEEEEEecC-----CCcEEEEEEEEccC
Q psy8342 118 RLRIIAGHSLAKKDIFGA-RIDLNTVNGDQ---TIDSALTKTRKKTLNPVWNEEFIFRVKP-----SEHKLVFQVFDMNR 188 (225)
Q Consensus 118 ~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~---~~~~~kT~v~~~~~~P~Wne~f~f~v~~-----~~~~L~v~V~d~d~ 188 (225)
.+-.++|++|+..+..|. ++|+.+..... ....++|+++++++||+|| +|.|.+.. ....|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 345679999999998887 77776654322 2336899999999999999 68887542 14789999999999
Q ss_pred CCCCceeEEEEEECcccCCC
Q psy8342 189 LTRDDFLGMVELSLLNLPRE 208 (225)
Q Consensus 189 ~~~d~~lG~~~i~l~~l~~~ 208 (225)
++++++||++.++|++|...
T Consensus 82 ~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 82 SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCCcEEEEEEEEHHHHhcC
Confidence 99999999999999999844
No 94
>PLN03008 Phospholipase D delta
Probab=99.51 E-value=5.4e-14 Score=128.85 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=71.3
Q ss_pred eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEccCCCCCceeEEEEEECcccCCCCCCcccc
Q psy8342 136 RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESDGCVIH 215 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~ 215 (225)
++|+.+.++..+ ..+|+++++++||+|||+|.|.+......|.|+|||+|.++ +++||++.|||++|..+...
T Consensus 78 DPYV~I~Lg~~r--v~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~v---- 150 (868)
T PLN03008 78 DPYVTVVVPQAT--LARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERI---- 150 (868)
T ss_pred CceEEEEECCcc--eeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCce----
Confidence 788888777533 56999999999999999999999987789999999999997 58999999999999988766
Q ss_pred CeeEEccc
Q psy8342 216 NKKYILRP 223 (225)
Q Consensus 216 ~~w~~L~p 223 (225)
+.|++|..
T Consensus 151 d~Wl~Ll~ 158 (868)
T PLN03008 151 SGWFPVLG 158 (868)
T ss_pred EEEEEccc
Confidence 89999864
No 95
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.48 E-value=1e-13 Score=137.21 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=88.4
Q ss_pred CCCccceeEeeeeeecCCcCCCCCCeeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC--CcEEEEEEEEccC
Q psy8342 111 EEPTEQIRLRIIAGHSLAKKDIFGARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS--EHKLVFQVFDMNR 188 (225)
Q Consensus 111 ~~~~~~l~v~vi~a~~L~~~d~~g~~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~--~~~L~v~V~d~d~ 188 (225)
..-.|.|.|+|++|.||. .+..+.++|+++.+|.++ +.||++++++.||+|||.|.|.+..+ +..|+|+|||+|.
T Consensus 1976 ~~~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~~~--~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1976 QCLPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGNGP--PRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred hhCCcceEEEEeeccccc-cccCCCCCeEEEEECCCC--cccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 445799999999999998 333333999999988653 56899999999999999999887765 4789999999999
Q ss_pred CCCCceeEEEEEECcccCCCCCCccccCeeEEccc
Q psy8342 189 LTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRP 223 (225)
Q Consensus 189 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~p 223 (225)
+++| .||.+.|+|.++..+... ..||.|.+
T Consensus 2053 f~kd-~~G~~~i~l~~vv~~~~~----~~~~~L~~ 2082 (2102)
T PLN03200 2053 FGKS-SLGKVTIQIDRVVMEGTY----SGEYSLNP 2082 (2102)
T ss_pred cCCC-CCceEEEEHHHHhcCcee----eeeeecCc
Confidence 9655 899999999999976555 89999986
No 96
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.45 E-value=3.6e-13 Score=91.40 Aligned_cols=83 Identities=30% Similarity=0.492 Sum_probs=68.9
Q ss_pred eeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC-CcEEEEEEEEccCCCCCce
Q psy8342 117 IRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS-EHKLVFQVFDMNRLTRDDF 194 (225)
Q Consensus 117 l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~-~~~L~v~V~d~d~~~~d~~ 194 (225)
|.|+|++|++|+..+..+. ++|+.+..+......++|++++++.+|.|+|+|.|.+... ...|.|+|||.+..+++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 6899999999999886666 7777665554332458999999999999999999997644 3569999999999999999
Q ss_pred eEEEE
Q psy8342 195 LGMVE 199 (225)
Q Consensus 195 lG~~~ 199 (225)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 97
>KOG1011|consensus
Probab=99.45 E-value=8.2e-14 Score=123.03 Aligned_cols=106 Identities=29% Similarity=0.459 Sum_probs=93.4
Q ss_pred CCCccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEccCC
Q psy8342 111 EEPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRL 189 (225)
Q Consensus 111 ~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~ 189 (225)
......+.++|++|.+|..+|..|+ ++|+....|.. +.+|+++...+||+|||.|+|++.+....|++.|||.|.-
T Consensus 291 skwsakitltvlcaqgl~akdktg~sdpyvt~qv~kt---krrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~d 367 (1283)
T KOG1011|consen 291 SKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKT---KRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDND 367 (1283)
T ss_pred cccceeeEEeeeecccceecccCCCCCCcEEEeeccc---chhhHhhhhccchhhhhheeeeecCCCceeEEEEecCccc
Confidence 3456788999999999999999999 99999888854 6789999999999999999999999988999999998853
Q ss_pred -----------CCCceeEEEEEECcccCCCCCCccccCeeEEcccCC
Q psy8342 190 -----------TRDDFLGMVELSLLNLPRESDGCVIHNKKYILRPRR 225 (225)
Q Consensus 190 -----------~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~prs 225 (225)
-+|||||+..|.++.|..+. +.||.|+.|+
T Consensus 368 lksklrqkl~resddflgqtvievrtlsgem------dvwynlekrt 408 (1283)
T KOG1011|consen 368 LKSKLRQKLTRESDDFLGQTVIEVRTLSGEM------DVWYNLEKRT 408 (1283)
T ss_pred HHHHHHHHhhhcccccccceeEEEEecccch------hhhcchhhcc
Confidence 35899999999999998553 7899999885
No 98
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.44 E-value=4.1e-13 Score=96.72 Aligned_cols=84 Identities=25% Similarity=0.263 Sum_probs=68.7
Q ss_pred CCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC-CcEEEEEEEEccCCCCCceeEEEEEECcccCCCCC
Q psy8342 133 FGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS-EHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESD 210 (225)
Q Consensus 133 ~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~-~~~L~v~V~d~d~~~~d~~lG~~~i~l~~l~~~~~ 210 (225)
+|. ++|+.+..+... ..+|++++++.||+|||+|.|.+... ...|.|.|||++.+ ++++||.+.++|+++.....
T Consensus 10 ~G~~dPYv~v~v~~~~--~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~ 86 (111)
T cd04052 10 TGLLSPYAELYLNGKL--VYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATS 86 (111)
T ss_pred CCCCCceEEEEECCEE--EEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhh
Confidence 454 788887776432 46899999999999999999999765 47799999999998 89999999999999854322
Q ss_pred CccccCeeEEcc
Q psy8342 211 GCVIHNKKYILR 222 (225)
Q Consensus 211 ~~~~~~~w~~L~ 222 (225)
. ...||.|+
T Consensus 87 ~---~~~w~~L~ 95 (111)
T cd04052 87 V---GQQWFPLS 95 (111)
T ss_pred c---cceeEECC
Confidence 1 27999998
No 99
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.38 E-value=4.8e-12 Score=93.46 Aligned_cols=95 Identities=28% Similarity=0.438 Sum_probs=77.0
Q ss_pred ceeEeeeeeecCCcCC--CCCC---eeEEEEeCCCCccCcccCceecCCCC--CeeccEEEEEecC--------------
Q psy8342 116 QIRLRIIAGHSLAKKD--IFGA---RIDLNTVNGDQTIDSALTKTRKKTLN--PVWNEEFIFRVKP-------------- 174 (225)
Q Consensus 116 ~l~v~vi~a~~L~~~d--~~g~---~~~~~~~~~~~~~~~~kT~v~~~~~~--P~Wne~f~f~v~~-------------- 174 (225)
.|+|.|..|++++..+ ..|. ++|+...+......+++|.|+.+++| |.||+.|.|++..
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 4789999999966543 3553 77776655443445799999999999 9999999998765
Q ss_pred -------C---CcEEEEEEEEccCCCCCceeEEEEEECcccCCCCC
Q psy8342 175 -------S---EHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESD 210 (225)
Q Consensus 175 -------~---~~~L~v~V~d~d~~~~d~~lG~~~i~l~~l~~~~~ 210 (225)
. ...|.|+|||.|.+++|++||.+.++|..+..+..
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~ 126 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAK 126 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccccc
Confidence 1 26799999999999999999999999999987654
No 100
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.34 E-value=1.8e-11 Score=84.73 Aligned_cols=99 Identities=36% Similarity=0.561 Sum_probs=79.4
Q ss_pred eeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecC-CCcEEEEEEEEccCCCCCce
Q psy8342 117 IRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKP-SEHKLVFQVFDMNRLTRDDF 194 (225)
Q Consensus 117 l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~-~~~~L~v~V~d~d~~~~d~~ 194 (225)
|.|.|++|++|......+. .+|+.+.... ....+|.++.++.+|.||+.|.|.+.. ....|.|+||+.+..+.+.+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 5689999999987544444 6666665553 236789999999999999999999987 56789999999998887899
Q ss_pred eEEEEEECcccC-CCCCCccccCeeEEc
Q psy8342 195 LGMVELSLLNLP-RESDGCVIHNKKYIL 221 (225)
Q Consensus 195 lG~~~i~l~~l~-~~~~~~~~~~~w~~L 221 (225)
||.+.+++.++. ..... ..||+|
T Consensus 79 ig~~~~~l~~l~~~~~~~----~~~~~l 102 (102)
T cd00030 79 LGEVEIPLSELLDSGKEG----ELWLPL 102 (102)
T ss_pred eEEEEEeHHHhhhcCCcC----cceecC
Confidence 999999999998 43333 788875
No 101
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.33 E-value=2e-11 Score=84.88 Aligned_cols=95 Identities=36% Similarity=0.564 Sum_probs=76.6
Q ss_pred ceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC-CcEEEEEEEEccCCCCCc
Q psy8342 116 QIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS-EHKLVFQVFDMNRLTRDD 193 (225)
Q Consensus 116 ~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~-~~~L~v~V~d~d~~~~d~ 193 (225)
.+.+.|++|++|......+. .+|+.+..........+|+++.++.+|.|||+|.|.+... ...|.|+|||.+..+.+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 36789999999988765444 6666554443212358899999999999999999999887 789999999999888889
Q ss_pred eeEEEEEECcccCCCCC
Q psy8342 194 FLGMVELSLLNLPRESD 210 (225)
Q Consensus 194 ~lG~~~i~l~~l~~~~~ 210 (225)
++|.+.+++.++..+..
T Consensus 81 ~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 81 FIGQVTIPLSDLLLGGR 97 (101)
T ss_pred eeEEEEEEHHHcccCcc
Confidence 99999999999986643
No 102
>PLN02223 phosphoinositide phospholipase C
Probab=99.28 E-value=4.1e-11 Score=105.96 Aligned_cols=103 Identities=19% Similarity=0.314 Sum_probs=76.6
Q ss_pred ccceeEeeeeeecCCcC-----CCCCC-eeEEEEeC-CC-CccCcccCceecCCCCCeeccEEEEEecCCCc-EEEEEEE
Q psy8342 114 TEQIRLRIIAGHSLAKK-----DIFGA-RIDLNTVN-GD-QTIDSALTKTRKKTLNPVWNEEFIFRVKPSEH-KLVFQVF 184 (225)
Q Consensus 114 ~~~l~v~vi~a~~L~~~-----d~~g~-~~~~~~~~-~~-~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~-~L~v~V~ 184 (225)
...|.|+|+.|.+++.. +.... ++|+.+.. |. ....+++|++..++.||+|||+|.|.+..++. .|.|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 57799999999987521 11111 45554322 21 11225678888899999999999999988874 5789999
Q ss_pred EccCCCCCceeEEEEEECcccCCCCCCccccCeeEEccc
Q psy8342 185 DMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRP 223 (225)
Q Consensus 185 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~p 223 (225)
|+|..++++|+|++.+|+..|..| ..+.+|..
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~G-------yR~VpL~~ 519 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEG-------IRAVPLYD 519 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCC-------ceeEeccC
Confidence 999988999999999999999988 45555543
No 103
>KOG1028|consensus
Probab=99.26 E-value=1.9e-11 Score=107.02 Aligned_cols=95 Identities=29% Similarity=0.473 Sum_probs=80.8
Q ss_pred CCCCccceeEeeeeeecCCcCCCCCC-eeEE--EEeCCCCccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEE
Q psy8342 110 PEEPTEQIRLRIIAGHSLAKKDIFGA-RIDL--NTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQV 183 (225)
Q Consensus 110 ~~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~--~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V 183 (225)
+....+.|.|.|++|++|..++..+. ++|+ ....+...+.+.||.+.++++||+|||+|.|.+... +..|.|+|
T Consensus 293 Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V 372 (421)
T KOG1028|consen 293 YLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTV 372 (421)
T ss_pred eecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEE
Confidence 45567999999999999999998887 4554 455555667789999999999999999999988854 35789999
Q ss_pred EEccCCCCCceeEEEEEECcc
Q psy8342 184 FDMNRLTRDDFLGMVELSLLN 204 (225)
Q Consensus 184 ~d~d~~~~d~~lG~~~i~l~~ 204 (225)
||+|.++++++||.+.+....
T Consensus 373 ~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 373 WDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEcccccccceeeEEEecCCC
Confidence 999999999999999998875
No 104
>PLN02952 phosphoinositide phospholipase C
Probab=99.23 E-value=1.4e-10 Score=104.55 Aligned_cols=103 Identities=21% Similarity=0.299 Sum_probs=77.7
Q ss_pred ccceeEeeeeeecCCcCC---CCCC----eeEEEE-eCCC-CccCcccCceecCCCCCeeccEEEEEecCCC-cEEEEEE
Q psy8342 114 TEQIRLRIIAGHSLAKKD---IFGA----RIDLNT-VNGD-QTIDSALTKTRKKTLNPVWNEEFIFRVKPSE-HKLVFQV 183 (225)
Q Consensus 114 ~~~l~v~vi~a~~L~~~d---~~g~----~~~~~~-~~~~-~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~-~~L~v~V 183 (225)
...|.|+|+.|.+++... .... ++|+.+ ..|. ....+.+|+++.++.||+|||+|.|.+..++ ..|.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 567999999998875311 1111 344432 2221 1123678999999999999999999998876 4577999
Q ss_pred EEccCCCCCceeEEEEEECcccCCCCCCccccCeeEEccc
Q psy8342 184 FDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRP 223 (225)
Q Consensus 184 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~p 223 (225)
||+|..+.++|+|++.+||+.|..| ..|++|..
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~G-------yR~VpL~~ 581 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPG-------IRSVPLHD 581 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCC-------ceeEeCcC
Confidence 9999988999999999999999988 66888763
No 105
>KOG2059|consensus
Probab=99.20 E-value=3.1e-11 Score=107.68 Aligned_cols=102 Identities=25% Similarity=0.364 Sum_probs=92.8
Q ss_pred cceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEccCCCCCc
Q psy8342 115 EQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDD 193 (225)
Q Consensus 115 ~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~ 193 (225)
..|.|+|.+|+||+..+..|. ++||.+..+.+. ..+|.++-+++.|-|.|.|.|+++..-..|.|-|||.| +++|+
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~--v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~ 81 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEE--VCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDD 81 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchh--hhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccc
Confidence 568999999999999999988 999988877655 58899999999999999999999987788999999999 89999
Q ss_pred eeEEEEEECcccCCCCCCccccCeeEEccc
Q psy8342 194 FLGMVELSLLNLPRESDGCVIHNKKYILRP 223 (225)
Q Consensus 194 ~lG~~~i~l~~l~~~~~~~~~~~~w~~L~p 223 (225)
.||.+.|.=.+|....+. +.||.|+|
T Consensus 82 ~IGKvai~re~l~~~~~~----d~W~~L~~ 107 (800)
T KOG2059|consen 82 IIGKVAIKREDLHMYPGK----DTWFSLQP 107 (800)
T ss_pred ccceeeeeHHHHhhCCCC----ccceeccc
Confidence 999999999999888765 89999987
No 106
>KOG1264|consensus
Probab=99.16 E-value=1.6e-10 Score=104.58 Aligned_cols=130 Identities=21% Similarity=0.265 Sum_probs=88.4
Q ss_pred eeeeeCCCCcEEEeeecceee-eccccccccCCCCCCCCCCCccceeEeeeeeecCCcCCCCCCeeEEE-EeCCC--Ccc
Q psy8342 73 EERTDANGRTYYVNHIARCTQ-WERPTVHHTMSSNNSAPEEPTEQIRLRIIAGHSLAKKDIFGARIDLN-TVNGD--QTI 148 (225)
Q Consensus 73 e~~~d~~gr~~yv~~~~~~~~-w~~P~~~~~~~~~~~~~~~~~~~l~v~vi~a~~L~~~d~~g~~~~~~-~~~~~--~~~ 148 (225)
+.....+||+-||-.+..+.+ --+|.-. +....-....|.|.|+.|++|+........+++. ...|. +..
T Consensus 1028 qa~F~~ngrcGYvLqPs~Mrte~fdP~n~------e~~~~l~p~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~ 1101 (1267)
T KOG1264|consen 1028 QALFSLNGRCGYVLQPSSMRTEKFDPMNP------ESQRGLLPMTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTN 1101 (1267)
T ss_pred HHHhhcCCceeeEecchhcccccCCCCCh------HHhccccceEEEEEEeeccccccCCCCccCCcEEEEEeccccCCC
Confidence 344678999999866544322 1122211 0112223478899999999999544322223332 22232 122
Q ss_pred CcccCceecCCCCCeec-cEEEEEecCCC-cEEEEEEEEccCCCCCceeEEEEEECcccCCC
Q psy8342 149 DSALTKTRKKTLNPVWN-EEFIFRVKPSE-HKLVFQVFDMNRLTRDDFLGMVELSLLNLPRE 208 (225)
Q Consensus 149 ~~~kT~v~~~~~~P~Wn-e~f~f~v~~~~-~~L~v~V~d~d~~~~d~~lG~~~i~l~~l~~~ 208 (225)
..+.|.|..|++||+|| |+|.|++..++ ..|.|.|+|.|+++...|||++.+|+..++.|
T Consensus 1102 ~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1102 KFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred ceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhcc
Confidence 23444556699999999 99999999987 56789999999999989999999999999877
No 107
>KOG0169|consensus
Probab=99.13 E-value=2.2e-10 Score=103.52 Aligned_cols=93 Identities=26% Similarity=0.474 Sum_probs=71.6
Q ss_pred ceeEeeeeeecCCcCCCCC---C--eeEEEEe-CCC-CccCcccCc-eecCCCCCeeccEEEEEecCCCcE-EEEEEEEc
Q psy8342 116 QIRLRIIAGHSLAKKDIFG---A--RIDLNTV-NGD-QTIDSALTK-TRKKTLNPVWNEEFIFRVKPSEHK-LVFQVFDM 186 (225)
Q Consensus 116 ~l~v~vi~a~~L~~~d~~g---~--~~~~~~~-~~~-~~~~~~kT~-v~~~~~~P~Wne~f~f~v~~~~~~-L~v~V~d~ 186 (225)
+|.|+|+.|.++...-..+ . ++++++. .|- ....+.+|+ +..++.||.|+|+|.|.+..++.. |.|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999776543222 2 4443322 221 112367899 566899999999999999998854 56999999
Q ss_pred cCCCCCceeEEEEEECcccCCC
Q psy8342 187 NRLTRDDFLGMVELSLLNLPRE 208 (225)
Q Consensus 187 d~~~~d~~lG~~~i~l~~l~~~ 208 (225)
|..++|||+|+.++|+.+|..|
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~G 718 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQG 718 (746)
T ss_pred CCCCcccccceeeccHHHhhCc
Confidence 9999999999999999999987
No 108
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.11 E-value=5.7e-10 Score=100.43 Aligned_cols=96 Identities=22% Similarity=0.330 Sum_probs=72.3
Q ss_pred CccceeEeeeeeecCCcC--C-C--CCC--eeEEEEe-CCC-CccCcccCceecCCCCCeeccEEEEEecCCC-cEEEEE
Q psy8342 113 PTEQIRLRIIAGHSLAKK--D-I--FGA--RIDLNTV-NGD-QTIDSALTKTRKKTLNPVWNEEFIFRVKPSE-HKLVFQ 182 (225)
Q Consensus 113 ~~~~l~v~vi~a~~L~~~--d-~--~g~--~~~~~~~-~~~-~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~-~~L~v~ 182 (225)
...+|.|+|+.|.+++.. . . .+. ++|+.+. .|. ....+.+|++..++.||+|||+|.|.+..++ ..|.|.
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~ 546 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVE 546 (598)
T ss_pred cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEE
Confidence 346799999999987521 1 1 111 4444322 221 1122568889999999999999999998887 556799
Q ss_pred EEEccCCCCCceeEEEEEECcccCCC
Q psy8342 183 VFDMNRLTRDDFLGMVELSLLNLPRE 208 (225)
Q Consensus 183 V~d~d~~~~d~~lG~~~i~l~~l~~~ 208 (225)
|+|+|..++++|+|+..||+..|..|
T Consensus 547 V~d~d~~~~ddfiGQ~~lPv~~Lr~G 572 (598)
T PLN02230 547 VHEHDINEKDDFGGQTCLPVSEIRQG 572 (598)
T ss_pred EEECCCCCCCCEEEEEEcchHHhhCc
Confidence 99999988999999999999999988
No 109
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.11 E-value=1.3e-09 Score=98.07 Aligned_cols=95 Identities=23% Similarity=0.304 Sum_probs=71.6
Q ss_pred ccceeEeeeeeecCC--c-CCCCC--C--eeEEEEeC-CC-CccCcccCceecCCCCCeeccEEEEEecCCC-cEEEEEE
Q psy8342 114 TEQIRLRIIAGHSLA--K-KDIFG--A--RIDLNTVN-GD-QTIDSALTKTRKKTLNPVWNEEFIFRVKPSE-HKLVFQV 183 (225)
Q Consensus 114 ~~~l~v~vi~a~~L~--~-~d~~g--~--~~~~~~~~-~~-~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~-~~L~v~V 183 (225)
...|.|+|+.|.+++ . ..... . ++|+.+.. |. ....+.+|+++.++.||+|||+|.|.+..++ ..|.|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 467999999998753 1 11111 1 45553322 21 1123578999999999999999999998877 5567999
Q ss_pred EEccCCCCCceeEEEEEECcccCCC
Q psy8342 184 FDMNRLTRDDFLGMVELSLLNLPRE 208 (225)
Q Consensus 184 ~d~d~~~~d~~lG~~~i~l~~l~~~ 208 (225)
+|+|..+.++|||+..+|+..|..|
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~G 555 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQG 555 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCc
Confidence 9999888899999999999999988
No 110
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.09 E-value=3.2e-10 Score=106.34 Aligned_cols=100 Identities=29% Similarity=0.386 Sum_probs=87.6
Q ss_pred CCCCCccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC-CcEEEEEEEEc
Q psy8342 109 APEEPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS-EHKLVFQVFDM 186 (225)
Q Consensus 109 ~~~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~-~~~L~v~V~d~ 186 (225)
......|.|.|.+..|.||+..|.+|. ++|+...+.... .++|+++++++||+|||.|.++|... ...|.|.|+||
T Consensus 1034 emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~--vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dw 1111 (1227)
T COG5038 1034 EMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKS--VYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDW 1111 (1227)
T ss_pred eeecccCcEEEEEeccCCCcccccCCCCCceEEEEeccee--cccccchhccCCCCccccceEeeeccccceEEEEEeec
Confidence 445678999999999999999999996 888877666433 68999999999999999999999854 47899999999
Q ss_pred cCCCCCceeEEEEEECcccCCCCC
Q psy8342 187 NRLTRDDFLGMVELSLLNLPRESD 210 (225)
Q Consensus 187 d~~~~d~~lG~~~i~l~~l~~~~~ 210 (225)
|...+++.||.+.++|..|..+..
T Consensus 1112 d~~~knd~lg~~~idL~~l~~~~~ 1135 (1227)
T COG5038 1112 DSGEKNDLLGTAEIDLSKLEPGGT 1135 (1227)
T ss_pred ccCCCccccccccccHhhcCcCCc
Confidence 999999999999999999987654
No 111
>KOG1328|consensus
Probab=98.97 E-value=1.4e-10 Score=103.98 Aligned_cols=112 Identities=26% Similarity=0.493 Sum_probs=85.1
Q ss_pred CCCCCccceeEeeeeeecCCcCCCCCC-eeEEE--EeCCCC-------------------------c-cCcccCceecCC
Q psy8342 109 APEEPTEQIRLRIIAGHSLAKKDIFGA-RIDLN--TVNGDQ-------------------------T-IDSALTKTRKKT 159 (225)
Q Consensus 109 ~~~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~--~~~~~~-------------------------~-~~~~kT~v~~~~ 159 (225)
....+...+.|-+.+|.||..+|.+|. ++++. +..+.. + +..+-|+|+++|
T Consensus 108 ~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~T 187 (1103)
T KOG1328|consen 108 QNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKT 187 (1103)
T ss_pred CCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccccc
Confidence 345566778889999999999998887 44432 111110 0 113457889999
Q ss_pred CCCeeccEEEEEecCC-CcEEEEEEEEccCC---------------------------------CC---CceeEEEEEEC
Q psy8342 160 LNPVWNEEFIFRVKPS-EHKLVFQVFDMNRL---------------------------------TR---DDFLGMVELSL 202 (225)
Q Consensus 160 ~~P~Wne~f~f~v~~~-~~~L~v~V~d~d~~---------------------------------~~---d~~lG~~~i~l 202 (225)
+||.|+|.|.|.+..- ...+++.|||+|.- +. |||||.+.|||
T Consensus 188 LnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl 267 (1103)
T KOG1328|consen 188 LNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPL 267 (1103)
T ss_pred CCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccch
Confidence 9999999999999865 47899999998741 22 79999999999
Q ss_pred cccCCCCCCccccCeeEEcccCC
Q psy8342 203 LNLPRESDGCVIHNKKYILRPRR 225 (225)
Q Consensus 203 ~~l~~~~~~~~~~~~w~~L~prs 225 (225)
.++... +. ++||.|+|||
T Consensus 268 ~EiP~~-Gl----d~WFkLepRS 285 (1103)
T KOG1328|consen 268 AEIPPD-GL----DQWFKLEPRS 285 (1103)
T ss_pred hcCCcc-hH----HHHhccCccc
Confidence 999965 33 8999999997
No 112
>PLN02228 Phosphoinositide phospholipase C
Probab=98.97 E-value=6.6e-09 Score=93.25 Aligned_cols=95 Identities=26% Similarity=0.395 Sum_probs=71.6
Q ss_pred ccceeEeeeeeecCCc---CCCC--CC--eeEEEEe-CCC-CccCcccCceecCCCCCee-ccEEEEEecCCC-cEEEEE
Q psy8342 114 TEQIRLRIIAGHSLAK---KDIF--GA--RIDLNTV-NGD-QTIDSALTKTRKKTLNPVW-NEEFIFRVKPSE-HKLVFQ 182 (225)
Q Consensus 114 ~~~l~v~vi~a~~L~~---~d~~--g~--~~~~~~~-~~~-~~~~~~kT~v~~~~~~P~W-ne~f~f~v~~~~-~~L~v~ 182 (225)
...|.|+|+.|.+|+. .+.. +. ++|+.+. .|. ....+++|++++++.||+| ||+|.|.+..++ ..|.|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 4579999999998731 1111 11 4444332 221 1123678999999999999 999999998877 556799
Q ss_pred EEEccCCCCCceeEEEEEECcccCCC
Q psy8342 183 VFDMNRLTRDDFLGMVELSLLNLPRE 208 (225)
Q Consensus 183 V~d~d~~~~d~~lG~~~i~l~~l~~~ 208 (225)
|+|.|..+.++|+|++.|||+.|..|
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~G 535 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSG 535 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCC
Confidence 99999888999999999999999987
No 113
>KOG1328|consensus
Probab=98.92 E-value=4e-10 Score=101.03 Aligned_cols=96 Identities=26% Similarity=0.355 Sum_probs=82.7
Q ss_pred CCCccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCc----cCcccCceecCCCCCeeccEEEEEecCCC-----cEEE
Q psy8342 111 EEPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQT----IDSALTKTRKKTLNPVWNEEFIFRVKPSE-----HKLV 180 (225)
Q Consensus 111 ~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~----~~~~kT~v~~~~~~P~Wne~f~f~v~~~~-----~~L~ 180 (225)
.....+|.|.|+.|+++.+.|.+|. ++++++..++.. ....+|+|+++++||+|+|+|+|.|+... ..|.
T Consensus 943 ~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~ 1022 (1103)
T KOG1328|consen 943 NGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLH 1022 (1103)
T ss_pred eccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEE
Confidence 4456789999999999999999999 888776665432 34689999999999999999999998652 5789
Q ss_pred EEEEEccCCCCCceeEEEEEECcccC
Q psy8342 181 FQVFDMNRLTRDDFLGMVELSLLNLP 206 (225)
Q Consensus 181 v~V~d~d~~~~d~~lG~~~i~l~~l~ 206 (225)
|+|.|+|-+..+||-|++.+.|.++.
T Consensus 1023 FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1023 FTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred EEeeccceecccccchHHHHhhCCCC
Confidence 99999999999999999999999886
No 114
>PLN02270 phospholipase D alpha
Probab=98.89 E-value=7e-09 Score=95.59 Aligned_cols=103 Identities=14% Similarity=0.167 Sum_probs=85.0
Q ss_pred CccceeEeeeeeecCCcCCC----------------CC--C-eeEEEEeCCCCccCcccCceecCC-CCCeeccEEEEEe
Q psy8342 113 PTEQIRLRIIAGHSLAKKDI----------------FG--A-RIDLNTVNGDQTIDSALTKTRKKT-LNPVWNEEFIFRV 172 (225)
Q Consensus 113 ~~~~l~v~vi~a~~L~~~d~----------------~g--~-~~~~~~~~~~~~~~~~kT~v~~~~-~~P~Wne~f~f~v 172 (225)
-.|.|.++|++|++|+.++. .+ . ++|+.+..+... ..+|+++.+. .||+|+|+|.+.+
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~--v~rtr~~~~~~~~p~w~e~f~i~~ 83 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKAR--VGRTRKIENEPKNPRWYESFHIYC 83 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcE--EEEEeecCCCCCCCccccceEEee
Confidence 35889999999999986311 11 1 778777766543 5799999874 6999999999999
Q ss_pred cCCCcEEEEEEEEccCCCCCceeEEEEEECcccCCCCCCccccCeeEEcc
Q psy8342 173 KPSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILR 222 (225)
Q Consensus 173 ~~~~~~L~v~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 222 (225)
......+.|+|.|.|.++. .+||.+.||+.+|..+... ++||+|.
T Consensus 84 ah~~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i----~~~~~~~ 128 (808)
T PLN02270 84 AHMASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEV----DRWVEIL 128 (808)
T ss_pred ccCcceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCcc----ccEEecc
Confidence 9888899999999999875 5999999999999988776 8999885
No 115
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.87 E-value=6.6e-09 Score=97.70 Aligned_cols=97 Identities=27% Similarity=0.457 Sum_probs=82.9
Q ss_pred CCCCccceeEeeeeeecCCcCC--CCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEc
Q psy8342 110 PEEPTEQIRLRIIAGHSLAKKD--IFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDM 186 (225)
Q Consensus 110 ~~~~~~~l~v~vi~a~~L~~~d--~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~ 186 (225)
....-|.+.|+|.+|++|...+ .++. ++|+.+...+.. ..+|+++++++||+|||+|.+.+...+..|.|+|||.
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~--~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~ 508 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRV--IGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDF 508 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEecccc--CCccceeeccCCccccceEEEEecccCCceeEEEEec
Confidence 3446799999999999999887 4555 888877644322 4699999999999999999999998889999999999
Q ss_pred cCCCCCceeEEEEEECcccCCC
Q psy8342 187 NRLTRDDFLGMVELSLLNLPRE 208 (225)
Q Consensus 187 d~~~~d~~lG~~~i~l~~l~~~ 208 (225)
+.+.+|+.+|.+.++|..|...
T Consensus 509 n~~~sd~vvG~~~l~L~~L~~~ 530 (1227)
T COG5038 509 NSFKSDKVVGSTQLDLALLHQN 530 (1227)
T ss_pred cccCCcceeeeEEechHHhhhc
Confidence 9999999999999999988754
No 116
>KOG1031|consensus
Probab=98.78 E-value=7.2e-09 Score=91.34 Aligned_cols=106 Identities=20% Similarity=0.286 Sum_probs=86.2
Q ss_pred ccceeEeeeeeecCCcCCCCCC--eeEEEEeCCCCccCcccCceecCCCCCeec-cEEEEEecCC---CcEEEEEEEEcc
Q psy8342 114 TEQIRLRIIAGHSLAKKDIFGA--RIDLNTVNGDQTIDSALTKTRKKTLNPVWN-EEFIFRVKPS---EHKLVFQVFDMN 187 (225)
Q Consensus 114 ~~~l~v~vi~a~~L~~~d~~g~--~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wn-e~f~f~v~~~---~~~L~v~V~d~d 187 (225)
.+.|.|+|..|++|+-+|.... +.++.+..+.. .+||-|..+++||.|| +-|.|+|... +.+|.|.+.|+|
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~---t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~d 78 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANT---TFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHD 78 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEeccc---ceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccc
Confidence 3678999999999999987655 77777766653 6899999999999999 6789999865 478999999999
Q ss_pred CCCCCceeEEEEEECcccCCCCCC------ccccCeeEEcc
Q psy8342 188 RLTRDDFLGMVELSLLNLPRESDG------CVIHNKKYILR 222 (225)
Q Consensus 188 ~~~~d~~lG~~~i~l~~l~~~~~~------~~~~~~w~~L~ 222 (225)
..+.+|-||.+.|.++.|...... .+...+||++.
T Consensus 79 tysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pif 119 (1169)
T KOG1031|consen 79 TYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIF 119 (1169)
T ss_pred ccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecc
Confidence 999999999999999987643221 12337899864
No 117
>KOG0905|consensus
Probab=98.71 E-value=1.5e-08 Score=95.14 Aligned_cols=109 Identities=20% Similarity=0.252 Sum_probs=85.8
Q ss_pred CccceeEeeeeeecCCcCCCCCC-e--eEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC----CcEEEEEEEE
Q psy8342 113 PTEQIRLRIIAGHSLAKKDIFGA-R--IDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS----EHKLVFQVFD 185 (225)
Q Consensus 113 ~~~~l~v~vi~a~~L~~~d~~g~-~--~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~----~~~L~v~V~d 185 (225)
..++|.|-|..+++|+-...+.. + +..++.....+..+.||+++++|.||.|||.+.+...+. .+.|.++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 35888899999999964432222 3 444555565556689999999999999999998884433 3789999999
Q ss_pred ccCCCCCceeEEEEEECcccCCCCCCccccCeeEEcccCC
Q psy8342 186 MNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRPRR 225 (225)
Q Consensus 186 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~prs 225 (225)
.+....+.|||.+.|+|.++....+. .+||.|...+
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE~----~~Wy~lg~~~ 1637 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKES----VGWYNLGACS 1637 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhhh----cceeeccccc
Confidence 99888899999999999999877655 6999997653
No 118
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.59 E-value=1.8e-07 Score=65.60 Aligned_cols=85 Identities=20% Similarity=0.275 Sum_probs=65.3
Q ss_pred eeEeeeeeecCCcCC---CCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEccCCCCC
Q psy8342 117 IRLRIIAGHSLAKKD---IFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRD 192 (225)
Q Consensus 117 l~v~vi~a~~L~~~d---~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d 192 (225)
|.|+|..++++...+ ..+. ..|+.+..++.. +.+|++ +.||.|||+|.|.|.. ...+.|.|||... ...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~--kaRTr~---srnd~WnE~F~i~Vdk-~nEiel~VyDk~~-~~~ 73 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVE--RARTKP---SRNDRWNEDFEIPVEK-NNEEEVIVYDKGG-DQP 73 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEE--EEeccC---CCCCcccceEEEEecC-CcEEEEEEEeCCC-Cee
Confidence 578999999998776 3344 788888777643 567766 4799999999999964 5689999999853 344
Q ss_pred ceeEEEEEECcccCCC
Q psy8342 193 DFLGMVELSLLNLPRE 208 (225)
Q Consensus 193 ~~lG~~~i~l~~l~~~ 208 (225)
-.||..-+.|.+|...
T Consensus 74 ~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 74 VPVGLLWLRLSDIAEE 89 (109)
T ss_pred cceeeehhhHHHHHHH
Confidence 5789999999887643
No 119
>KOG2060|consensus
Probab=98.56 E-value=4.8e-08 Score=82.06 Aligned_cols=113 Identities=22% Similarity=0.304 Sum_probs=94.2
Q ss_pred CCCCCccceeEeeeeeecCCcCCCCCC----eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEE
Q psy8342 109 APEEPTEQIRLRIIAGHSLAKKDIFGA----RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVF 184 (225)
Q Consensus 109 ~~~~~~~~l~v~vi~a~~L~~~d~~g~----~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~ 184 (225)
...+..+.+.|.|++|++|..+.-.+. .+.++...+.....+.+|+.-.++++|.+...+.|.-.+....|.++||
T Consensus 263 ~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~ 342 (405)
T KOG2060|consen 263 ALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVW 342 (405)
T ss_pred hhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEe
Confidence 456678999999999999987755444 5566666666666788999999999999999999998888899999999
Q ss_pred -EccCCCCCceeEEEEEECcccCCCC-CCccccCeeEEcccCC
Q psy8342 185 -DMNRLTRDDFLGMVELSLLNLPRES-DGCVIHNKKYILRPRR 225 (225)
Q Consensus 185 -d~d~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~~w~~L~prs 225 (225)
|+.++..+.|||.+.+-+.+|.... .. ..||.|.+.+
T Consensus 343 gdygRmd~k~fmg~aqi~l~eL~ls~~~~----igwyKlfgss 381 (405)
T KOG2060|consen 343 GDYGRMDHKSFMGVAQIMLDELNLSSSPV----IGWYKLFGSS 381 (405)
T ss_pred ccccccchHHHhhHHHHHhhhhccccccc----eeeeeccCCc
Confidence 7888888899999999999998765 33 8999998753
No 120
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.54 E-value=6.1e-08 Score=53.15 Aligned_cols=30 Identities=63% Similarity=1.268 Sum_probs=28.0
Q ss_pred CCCCceeeeeCC-CCcEEEeeecceeeeccc
Q psy8342 68 LPPGWEERTDAN-GRTYYVNHIARCTQWERP 97 (225)
Q Consensus 68 LP~gwe~~~d~~-gr~~yv~~~~~~~~w~~P 97 (225)
||+||++..+.. |+.||+|+.++.++|.+|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 899999999865 999999999999999987
No 121
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.43 E-value=2.1e-07 Score=62.81 Aligned_cols=89 Identities=18% Similarity=0.264 Sum_probs=66.7
Q ss_pred EeeeeeecCCcCCCCCC--eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEEEEccCCCCCc
Q psy8342 119 LRIIAGHSLAKKDIFGA--RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVFDMNRLTRDD 193 (225)
Q Consensus 119 v~vi~a~~L~~~d~~g~--~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~d~d~~~~d~ 193 (225)
++++.++||..-...|- .+++.....-.+...+||++.....||+|.|+|.|.+... ...|.|.|+. .+.+.+
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe 80 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKR 80 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccc
Confidence 67888999876655555 4444322222222368999999999999999999998753 3678899998 556788
Q ss_pred eeEEEEEECcccCCCC
Q psy8342 194 FLGMVELSLLNLPRES 209 (225)
Q Consensus 194 ~lG~~~i~l~~l~~~~ 209 (225)
.||.+.+.|+++..+.
T Consensus 81 ~iG~~sL~l~s~geeE 96 (103)
T cd08684 81 TIGECSLSLRTLSTQE 96 (103)
T ss_pred eeeEEEeecccCCHHH
Confidence 9999999999998653
No 122
>KOG1011|consensus
Probab=98.39 E-value=1.3e-06 Score=78.28 Aligned_cols=106 Identities=21% Similarity=0.223 Sum_probs=81.5
Q ss_pred cceeEeeeeeecCCcCCCCCCeeEEE-EeCCC---CccCcccCceecCCCCCeeccEEEEEecCCC----cEEEEEEEEc
Q psy8342 115 EQIRLRIIAGHSLAKKDIFGARIDLN-TVNGD---QTIDSALTKTRKKTLNPVWNEEFIFRVKPSE----HKLVFQVFDM 186 (225)
Q Consensus 115 ~~l~v~vi~a~~L~~~d~~g~~~~~~-~~~~~---~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~----~~L~v~V~d~ 186 (225)
..+.|.|+.|.+|......-.++++. ...|+ ++++++.|+.+.++..|.+||+|.|-+.+.+ -.|.|.|.|+
T Consensus 1125 hkvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred ceEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence 56778889999998765332244442 22332 4566888999999999999999999997653 5788999998
Q ss_pred cCCCCCceeEEEEEECcccCCCCCCccccCeeEEcccC
Q psy8342 187 NRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRPR 224 (225)
Q Consensus 187 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~pr 224 (225)
.-...|..+|.+.++|+++.....- ..|++|-.|
T Consensus 1205 CFAReDRvvGl~VlqL~~va~kGS~----a~W~pLgrr 1238 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVADKGSC----ACWVPLGRR 1238 (1283)
T ss_pred eeecccceeeeeeeehhhHhhcCce----eEeeecccc
Confidence 8777888999999999999865333 799999754
No 123
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.34 E-value=4.9e-07 Score=49.90 Aligned_cols=31 Identities=65% Similarity=1.349 Sum_probs=29.5
Q ss_pred CCCCceeeeeCCCCcEEEeeecceeeecccc
Q psy8342 68 LPPGWEERTDANGRTYYVNHIARCTQWERPT 98 (225)
Q Consensus 68 LP~gwe~~~d~~gr~~yv~~~~~~~~w~~P~ 98 (225)
||.||+...+..|+.||+|+.++.++|.+|.
T Consensus 1 lp~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 1 LPPGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 7999999999889999999999999999985
No 124
>KOG1326|consensus
Probab=98.30 E-value=3.9e-07 Score=84.74 Aligned_cols=92 Identities=22% Similarity=0.299 Sum_probs=78.6
Q ss_pred CCccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC-CcEEEEEEEEccCC
Q psy8342 112 EPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS-EHKLVFQVFDMNRL 189 (225)
Q Consensus 112 ~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~-~~~L~v~V~d~d~~ 189 (225)
.....++|.+++|.+|.+.|.+|. ++|+.+..|.... .-+...+.+++||+|++.|++...-+ +..|.+.|||+|.+
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~-~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRT-LDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLE 688 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchh-hhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecc
Confidence 345667799999999999999999 9999988886432 35677899999999999999887754 57789999999999
Q ss_pred CCCceeEEEEEECcc
Q psy8342 190 TRDDFLGMVELSLLN 204 (225)
Q Consensus 190 ~~d~~lG~~~i~l~~ 204 (225)
+.|+.||+..++|+.
T Consensus 689 ~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLEN 703 (1105)
T ss_pred cccchhhceehhhhh
Confidence 999999999999875
No 125
>PLN02352 phospholipase D epsilon
Probab=98.18 E-value=7.4e-06 Score=75.77 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=74.2
Q ss_pred CCCCccceeEeeeeeecCCcC----CCC--CCeeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCC-cEEEEE
Q psy8342 110 PEEPTEQIRLRIIAGHSLAKK----DIF--GARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSE-HKLVFQ 182 (225)
Q Consensus 110 ~~~~~~~l~v~vi~a~~L~~~----d~~--g~~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~-~~L~v~ 182 (225)
++--.|+|.++|++|+-+... +.. ++++|+.+..+... ..+| .+.-||.|+|+|.+.+.... ..+.|+
T Consensus 5 ~~~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~--v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~ 79 (758)
T PLN02352 5 QKFFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKK--VAKT---SHEYDRVWNQTFQILCAHPLDSTITIT 79 (758)
T ss_pred ccccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcE--EecC---CCCCCCccccceeEEeeeecCCcEEEE
Confidence 344579999999999843221 111 22677777666543 3566 55569999999999998776 689999
Q ss_pred EEEccCCCCCceeEEEEEECcccCCCCC-CccccCeeEEcc
Q psy8342 183 VFDMNRLTRDDFLGMVELSLLNLPRESD-GCVIHNKKYILR 222 (225)
Q Consensus 183 V~d~d~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~~w~~L~ 222 (225)
|.| ...+||.+.||+.+|..+.. . ++||+|.
T Consensus 80 vk~-----~~~~ig~~~~p~~~~~~g~~~~----~~~~~~~ 111 (758)
T PLN02352 80 LKT-----KCSILGRFHIQAHQIVTEASFI----NGFFPLI 111 (758)
T ss_pred Eec-----CCeEEEEEEEEHHHhhCCCccc----ceEEEcc
Confidence 988 25799999999999998755 5 8999885
No 126
>KOG1013|consensus
Probab=98.08 E-value=6.4e-06 Score=68.44 Aligned_cols=94 Identities=26% Similarity=0.271 Sum_probs=75.5
Q ss_pred CCCCccceeEeeeeeecCCcCCCCCC-eeEEEEeC--CCCccCcccCceecCCCCCeeccEEEEEecCCC---cEEEEEE
Q psy8342 110 PEEPTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVN--GDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSE---HKLVFQV 183 (225)
Q Consensus 110 ~~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~--~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~---~~L~v~V 183 (225)
.......+.|.++++.+|..+|.+|. ++|+.... +.....+.||.+.+++++|+||+.|.|.+.+.. ..+.|.|
T Consensus 228 ~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsv 307 (362)
T KOG1013|consen 228 YSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSV 307 (362)
T ss_pred cCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEee
Confidence 34456788999999999999999988 66664433 333445789999999999999999999998764 6788999
Q ss_pred EEccCCCCCceeEEEEEECc
Q psy8342 184 FDMNRLTRDDFLGMVELSLL 203 (225)
Q Consensus 184 ~d~d~~~~d~~lG~~~i~l~ 203 (225)
||.+..+..+++|-+...+-
T Consensus 308 gd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 308 GDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred cccCCCcCccCCCccccccc
Confidence 99998878889988766543
No 127
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.05 E-value=4.3e-06 Score=45.61 Aligned_cols=30 Identities=63% Similarity=1.274 Sum_probs=28.3
Q ss_pred CCCceeeeeCCCCcEEEeeecceeeecccc
Q psy8342 69 PPGWEERTDANGRTYYVNHIARCTQWERPT 98 (225)
Q Consensus 69 P~gwe~~~d~~gr~~yv~~~~~~~~w~~P~ 98 (225)
|.||+...+..|+.||+|+.++.++|.+|.
T Consensus 1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 789999999889999999999999999985
No 128
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.04 E-value=1.6e-05 Score=57.68 Aligned_cols=101 Identities=19% Similarity=0.256 Sum_probs=68.3
Q ss_pred eeEeeeeeecCCcC-------C----C---CCCeeEEEEeCCC-CccCcccCceecCCCCCeeccEEEEEecC-----C-
Q psy8342 117 IRLRIIAGHSLAKK-------D----I---FGARIDLNTVNGD-QTIDSALTKTRKKTLNPVWNEEFIFRVKP-----S- 175 (225)
Q Consensus 117 l~v~vi~a~~L~~~-------d----~---~g~~~~~~~~~~~-~~~~~~kT~v~~~~~~P~Wne~f~f~v~~-----~- 175 (225)
|.|.|++|.+|... + . -|...|+.+.... ......+|+++-++..|.|+..++|.++- .
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 45677777777532 1 1 1114455443211 12236789999999999999999999761 1
Q ss_pred ----------CcEEEEEEEEccCC----------CCCceeEEEEEECcccCCCC-CCccccCeeEEc
Q psy8342 176 ----------EHKLVFQVFDMNRL----------TRDDFLGMVELSLLNLPRES-DGCVIHNKKYIL 221 (225)
Q Consensus 176 ----------~~~L~v~V~d~d~~----------~~d~~lG~~~i~l~~l~~~~-~~~~~~~~w~~L 221 (225)
...+.|+||....- .+|-+||.+.||+.+|.... +. .+||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGi----tGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGI----TGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCc----cccccC
Confidence 16789999986542 23558999999999987543 34 899985
No 129
>KOG1013|consensus
Probab=98.00 E-value=8.3e-07 Score=73.60 Aligned_cols=102 Identities=24% Similarity=0.274 Sum_probs=80.3
Q ss_pred CCCCCccceeEeeeeeecCCcCCCCCC-eeEEE--EeCCCCccCcccCceecCCCCCeeccEEEEEecCC----CcEEEE
Q psy8342 109 APEEPTEQIRLRIIAGHSLAKKDIFGA-RIDLN--TVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS----EHKLVF 181 (225)
Q Consensus 109 ~~~~~~~~l~v~vi~a~~L~~~d~~g~-~~~~~--~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~----~~~L~v 181 (225)
.+.....++.+++.+|.+|.+++.++. ++|+. ...|.....+.+|++..+++||.|+|+.....-.. ...+.+
T Consensus 87 ~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk 166 (362)
T KOG1013|consen 87 LYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRK 166 (362)
T ss_pred hhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhhe
Confidence 455667889999999999999999998 65553 44444445568899999999999998876554322 266788
Q ss_pred EEEEccCCCCCceeEEEEEECcccCCCCC
Q psy8342 182 QVFDMNRLTRDDFLGMVELSLLNLPRESD 210 (225)
Q Consensus 182 ~V~d~d~~~~d~~lG~~~i~l~~l~~~~~ 210 (225)
.|.|.+.+..++++|+..+++..|...+.
T Consensus 167 ~vcdn~~~~~~~sqGq~r~~lkKl~p~q~ 195 (362)
T KOG1013|consen 167 VVCDNDKKTHNESQGQSRVSLKKLKPLQR 195 (362)
T ss_pred eeccCcccccccCcccchhhhhccChhhc
Confidence 99999999999999999999888876543
No 130
>PLN02964 phosphatidylserine decarboxylase
Probab=97.77 E-value=3.5e-05 Score=70.66 Aligned_cols=90 Identities=24% Similarity=0.380 Sum_probs=70.6
Q ss_pred CCCccceeEeeeeeecCCcCCCCCCeeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCC-cEEEEEEEEccCC
Q psy8342 111 EEPTEQIRLRIIAGHSLAKKDIFGARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSE-HKLVFQVFDMNRL 189 (225)
Q Consensus 111 ~~~~~~l~v~vi~a~~L~~~d~~g~~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~-~~L~v~V~d~d~~ 189 (225)
.+..|...++++.|+ ++... ..++.+..|.+ .++|.+.++|+||+||+...|.|.+.+ ....|.|||++.+
T Consensus 50 ~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~g~~---~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (644)
T PLN02964 50 EDFSGIALLTLVGAE----MKFKD-KWLACVSFGEQ---TFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL 121 (644)
T ss_pred ccccCeEEEEeehhh----hccCC-cEEEEEEecce---eeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence 456788889999887 33321 44445555643 699999999999999999999998765 4458999999999
Q ss_pred CCCceeEEEEEECcccCCC
Q psy8342 190 TRDDFLGMVELSLLNLPRE 208 (225)
Q Consensus 190 ~~d~~lG~~~i~l~~l~~~ 208 (225)
++++++|.+.++|.++...
T Consensus 122 s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 122 SKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CHHHhhhheeecHhhccHH
Confidence 9999999999988776543
No 131
>KOG3259|consensus
Probab=97.60 E-value=2.5e-05 Score=57.39 Aligned_cols=36 Identities=47% Similarity=0.999 Sum_probs=32.7
Q ss_pred CCCCCCceeeee-CCCCcEEEeeecceeeeccccccc
Q psy8342 66 GALPPGWEERTD-ANGRTYYVNHIARCTQWERPTVHH 101 (225)
Q Consensus 66 ~~LP~gwe~~~d-~~gr~~yv~~~~~~~~w~~P~~~~ 101 (225)
..||+||+.+.+ +.||.||.|+.|...||++|....
T Consensus 5 ~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t~ 41 (163)
T KOG3259|consen 5 EKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGTS 41 (163)
T ss_pred ccCCchhheeccccCCCcceeccccchhhccCCCccc
Confidence 679999999998 889999999999999999997554
No 132
>KOG1265|consensus
Probab=97.52 E-value=0.0002 Score=66.53 Aligned_cols=91 Identities=24% Similarity=0.414 Sum_probs=68.1
Q ss_pred ccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceec-CCCCCeecc-EEEEE-ecCCC-cEEEEEEEEccC
Q psy8342 114 TEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRK-KTLNPVWNE-EFIFR-VKPSE-HKLVFQVFDMNR 188 (225)
Q Consensus 114 ~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~-~~~~P~Wne-~f~f~-v~~~~-~~L~v~V~d~d~ 188 (225)
.+++.|+||+|.-|..++.... .+..+-...+...+.++|+++. +++||+|+| .|.|. |--++ ..|.|.||+..
T Consensus 702 A~t~sV~VISgqFLSdrkvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg- 780 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRKVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG- 780 (1189)
T ss_pred EeeEEEEEEeeeeccccccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC-
Confidence 4789999999999988875533 4444555554444578888876 799999994 57776 22233 67999999965
Q ss_pred CCCCceeEEEEEECcccCCC
Q psy8342 189 LTRDDFLGMVELSLLNLPRE 208 (225)
Q Consensus 189 ~~~d~~lG~~~i~l~~l~~~ 208 (225)
..|||+-.+|++.|..|
T Consensus 781 ---gK~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 781 ---GKFIGQRILPVDGLNAG 797 (1189)
T ss_pred ---CceeeeeccchhcccCc
Confidence 35999999999999877
No 133
>KOG1891|consensus
Probab=97.49 E-value=7.5e-05 Score=58.73 Aligned_cols=35 Identities=34% Similarity=0.723 Sum_probs=21.4
Q ss_pred CCCCCCceeeeeCCCCcEEEeeecceeeecccccc
Q psy8342 66 GALPPGWEERTDANGRTYYVNHIARCTQWERPTVH 100 (225)
Q Consensus 66 ~~LP~gwe~~~d~~gr~~yv~~~~~~~~w~~P~~~ 100 (225)
+.||+||+..++..--+||+++.++.+|..+|++.
T Consensus 127 EgLppGW~rv~s~e~GtyY~~~~~k~tQy~HPc~~ 161 (271)
T KOG1891|consen 127 EGLPPGWKRVFSPEKGTYYYHEEMKRTQYEHPCIS 161 (271)
T ss_pred ccCCcchhhccccccceeeeecccchhhhcCCCCC
Confidence 55666666666655556666666666666666543
No 134
>KOG1326|consensus
Probab=97.34 E-value=7.3e-05 Score=70.07 Aligned_cols=102 Identities=23% Similarity=0.224 Sum_probs=72.7
Q ss_pred CccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEec---CC-------CcEEEE
Q psy8342 113 PTEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVK---PS-------EHKLVF 181 (225)
Q Consensus 113 ~~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~---~~-------~~~L~v 181 (225)
....+++.+.+|+.|...+..+. +++..+..-.+ .+.|.++.+++||.|+++..|.-- .. --.+.|
T Consensus 204 ~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~q---s~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~ 280 (1105)
T KOG1326|consen 204 IHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQ---SKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVF 280 (1105)
T ss_pred hhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccc---cceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEE
Confidence 34677888899999988876666 55554333222 568999999999999999888622 11 145779
Q ss_pred EEEEccCCCCCceeEEEEEECcccCCCCCCccccCeeEEcc
Q psy8342 182 QVFDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILR 222 (225)
Q Consensus 182 ~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 222 (225)
+|||.+..+.++|+|+......-... .+ +-.|+++.
T Consensus 281 e~yd~dr~g~~ef~gr~~~~p~V~~~-~p----~lkw~p~~ 316 (1105)
T KOG1326|consen 281 EVYDLDRSGINEFKGRKKQRPYVMVQ-CP----ALKWVPTM 316 (1105)
T ss_pred EeehhhhhchHHhhcccccceEEEec-CC----ccceEEee
Confidence 99999999999999997765443332 12 26777764
No 135
>KOG1891|consensus
Probab=97.29 E-value=0.00016 Score=56.87 Aligned_cols=39 Identities=36% Similarity=0.835 Sum_probs=34.9
Q ss_pred CCCCCCCceeeeeCCCCcEEEeeecceeeeccccccccC
Q psy8342 65 QGALPPGWEERTDANGRTYYVNHIARCTQWERPTVHHTM 103 (225)
Q Consensus 65 ~~~LP~gwe~~~d~~gr~~yv~~~~~~~~w~~P~~~~~~ 103 (225)
..+|||||.--....||.|||||++++|-|.+|..+...
T Consensus 91 dlPLPpgWav~~T~~grkYYIDHn~~tTHW~HPlerEgL 129 (271)
T KOG1891|consen 91 DLPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLEREGL 129 (271)
T ss_pred cCCCCCCcceeeEecCceeEeecCCCcccccChhhhccC
Confidence 368999999999999999999999999999999876544
No 136
>KOG1327|consensus
Probab=97.18 E-value=0.00076 Score=60.08 Aligned_cols=86 Identities=23% Similarity=0.359 Sum_probs=65.1
Q ss_pred eeeeecCCcCCCCCC-eeEE--EEeCCC-CccCcccCceecCCCCCeeccEEEEEec-----CCCcEEEEEEEEccCCCC
Q psy8342 121 IIAGHSLAKKDIFGA-RIDL--NTVNGD-QTIDSALTKTRKKTLNPVWNEEFIFRVK-----PSEHKLVFQVFDMNRLTR 191 (225)
Q Consensus 121 vi~a~~L~~~d~~g~-~~~~--~~~~~~-~~~~~~kT~v~~~~~~P~Wne~f~f~v~-----~~~~~L~v~V~d~d~~~~ 191 (225)
.++|++|..+|.+++ ++++ +...++ .....++|.+++++++|.|.+ |.+.+. ..+..+.+.|||++..++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 366788888998888 4444 333322 223468999999999999976 554443 234789999999999999
Q ss_pred CceeEEEEEECcccCC
Q psy8342 192 DDFLGMVELSLLNLPR 207 (225)
Q Consensus 192 d~~lG~~~i~l~~l~~ 207 (225)
+++||++..++.++..
T Consensus 221 ~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQE 236 (529)
T ss_pred cCceeEecccHHHhcc
Confidence 9999999999999874
No 137
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.97 E-value=0.0065 Score=46.31 Aligned_cols=92 Identities=15% Similarity=0.258 Sum_probs=59.4
Q ss_pred ccceeEeeeeeecCCcCCCCCCeeEEEEeCCCCccC-cccCceecCCCCCeeccEEEEEecCC----CcEEEEEEEEccC
Q psy8342 114 TEQIRLRIIAGHSLAKKDIFGARIDLNTVNGDQTID-SALTKTRKKTLNPVWNEEFIFRVKPS----EHKLVFQVFDMNR 188 (225)
Q Consensus 114 ~~~l~v~vi~a~~L~~~d~~g~~~~~~~~~~~~~~~-~~kT~v~~~~~~P~Wne~f~f~v~~~----~~~L~v~V~d~d~ 188 (225)
...++|+++.+.++...+.....+.+.+..|...+. ...|+.+.. .++.|||.+.|++.-. +..|.|+||+...
T Consensus 7 ~~~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~ 85 (158)
T cd08398 7 NSNLRIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKG 85 (158)
T ss_pred CCCeEEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEec
Confidence 357889999999887654321133444455544332 123433333 5799999999988643 4789999999664
Q ss_pred CC----CCceeEEEEEECcccC
Q psy8342 189 LT----RDDFLGMVELSLLNLP 206 (225)
Q Consensus 189 ~~----~d~~lG~~~i~l~~l~ 206 (225)
.. ....+|.+.++|-+-.
T Consensus 86 ~~~~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 86 RKGAKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred ccCCCCceEEEEEEEEEEECCC
Confidence 21 2246999999988744
No 138
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.89 E-value=0.0064 Score=51.97 Aligned_cols=99 Identities=20% Similarity=0.289 Sum_probs=72.4
Q ss_pred eeEeeeeeecCCcCCCCCCeeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC--------CcEEEEEEEEcc-
Q psy8342 117 IRLRIIAGHSLAKKDIFGARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS--------EHKLVFQVFDMN- 187 (225)
Q Consensus 117 l~v~vi~a~~L~~~d~~g~~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~--------~~~L~v~V~d~d- 187 (225)
+.|.|++|++.+..... .+.+....+.. ...|-.+..+-.|.||..+..++... ..+|++++|..|
T Consensus 2 ivl~i~egr~F~~~~~~--~~vv~a~~ng~---~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~ 76 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRH--PIVVEAKFNGE---SLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDG 76 (340)
T ss_pred EEEEEecccCCCCCCCc--cEEEEEEeCCc---eeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecC
Confidence 57899999999876321 34443333322 45666777888999999999987743 378999999988
Q ss_pred CCCCCceeEEEEEECccc---CCCCCCccccCeeEEcc
Q psy8342 188 RLTRDDFLGMVELSLLNL---PRESDGCVIHNKKYILR 222 (225)
Q Consensus 188 ~~~~d~~lG~~~i~l~~l---~~~~~~~~~~~~w~~L~ 222 (225)
..+..+.||-+.++|+.. ..+.. .....||+|-
T Consensus 77 ~~~~re~iGyv~LdLRsa~~~~~~~~--~~~~~W~~LL 112 (340)
T PF12416_consen 77 STGKRESIGYVVLDLRSAVVPQEKNQ--KQKPKWYKLL 112 (340)
T ss_pred CCCcceeccEEEEEcccccccccccc--ccCCCeeEcc
Confidence 556778999999999999 44321 2348999985
No 139
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.72 E-value=0.012 Score=45.52 Aligned_cols=93 Identities=15% Similarity=0.324 Sum_probs=61.3
Q ss_pred ccceeEeeeeeecCCcCCCCCC-eeEEEEeCCCCccC-cccCceecCCCCCeeccEEEEEecCC----CcEEEEEEEEcc
Q psy8342 114 TEQIRLRIIAGHSLAKKDIFGA-RIDLNTVNGDQTID-SALTKTRKKTLNPVWNEEFIFRVKPS----EHKLVFQVFDMN 187 (225)
Q Consensus 114 ~~~l~v~vi~a~~L~~~d~~g~-~~~~~~~~~~~~~~-~~kT~v~~~~~~P~Wne~f~f~v~~~----~~~L~v~V~d~d 187 (225)
...++|+++.+.++...+.... .+.+.+..|...+. ...|+.+..+..+.|||.+.|++.-. +..|.|+||+..
T Consensus 7 ~~~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 7 EEKFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CCCEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 3578899999999886222222 34444455654432 23455444456799999999987643 478999999865
Q ss_pred CCC----------------CCceeEEEEEECcccC
Q psy8342 188 RLT----------------RDDFLGMVELSLLNLP 206 (225)
Q Consensus 188 ~~~----------------~d~~lG~~~i~l~~l~ 206 (225)
... ....||.+.++|-+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~ 121 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK 121 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEccc
Confidence 322 2468999999987744
No 140
>KOG3837|consensus
Probab=96.67 E-value=0.0026 Score=54.81 Aligned_cols=96 Identities=17% Similarity=0.244 Sum_probs=66.3
Q ss_pred ccceeEeeeeeecCCcCCCCCC---eeEEE--EeCCCCccCcccCceecCCCCCeeccEEEEEecCC------------C
Q psy8342 114 TEQIRLRIIAGHSLAKKDIFGA---RIDLN--TVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS------------E 176 (225)
Q Consensus 114 ~~~l~v~vi~a~~L~~~d~~g~---~~~~~--~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~------------~ 176 (225)
...|.+.|+++.+++--. |. +.++. .-+-.+...+.+|.+++++.+|.|+|.|.+.+... .
T Consensus 366 d~elel~ivrg~~~pvp~--gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr 443 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVPG--GPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKR 443 (523)
T ss_pred hhHhHHHHhhcccCCCCC--CchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence 355667777777765332 12 21221 11111223378999999999999999999998762 1
Q ss_pred cEEEEEEEEccCC-CCCceeEEEEEECcccCCCCCC
Q psy8342 177 HKLVFQVFDMNRL-TRDDFLGMVELSLLNLPRESDG 211 (225)
Q Consensus 177 ~~L~v~V~d~d~~-~~d~~lG~~~i~l~~l~~~~~~ 211 (225)
..++|+||....+ .+|.|+|.+.+.|.-|....+.
T Consensus 444 ~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei 479 (523)
T KOG3837|consen 444 LGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEI 479 (523)
T ss_pred cCeeEEEeeccccccccceeceeeeeehhhhcccch
Confidence 5689999998766 4678999999999888876554
No 141
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.66 E-value=0.015 Score=44.22 Aligned_cols=92 Identities=18% Similarity=0.271 Sum_probs=57.2
Q ss_pred cceeEeeeeeecCCcCC-CCCC-eeEEEEeCCCCccCc-ccCceecCCCCCeeccEEEEEecCC----CcEEEEEEEEcc
Q psy8342 115 EQIRLRIIAGHSLAKKD-IFGA-RIDLNTVNGDQTIDS-ALTKTRKKTLNPVWNEEFIFRVKPS----EHKLVFQVFDMN 187 (225)
Q Consensus 115 ~~l~v~vi~a~~L~~~d-~~g~-~~~~~~~~~~~~~~~-~kT~v~~~~~~P~Wne~f~f~v~~~----~~~L~v~V~d~d 187 (225)
..++|++....++...+ .... .+.+.+..|...... ..|.......++.|||.+.|++.-. +..|.|+||+.+
T Consensus 8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 45667777776665411 1111 333334455433222 2333333346899999999987633 478999999977
Q ss_pred CCC--CCceeEEEEEECcccC
Q psy8342 188 RLT--RDDFLGMVELSLLNLP 206 (225)
Q Consensus 188 ~~~--~d~~lG~~~i~l~~l~ 206 (225)
..+ ++..||.+.++|-+..
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred cCCCCcceEEEEEeEEeEccc
Confidence 554 4579999999988754
No 142
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.00 E-value=0.071 Score=41.44 Aligned_cols=91 Identities=19% Similarity=0.220 Sum_probs=56.0
Q ss_pred cceeEeeeeeecCCcCCCCCC---eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCC----CcEEEEEEEEcc
Q psy8342 115 EQIRLRIIAGHSLAKKDIFGA---RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS----EHKLVFQVFDMN 187 (225)
Q Consensus 115 ~~l~v~vi~a~~L~~~d~~g~---~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~----~~~L~v~V~d~d 187 (225)
..++|+|..+..+. .+.... .+.+.+..|.......+|....-+.++.|||.+.|++.-. ...|.|+||+..
T Consensus 10 ~~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 45667777765332 222211 3333344455444444566666667899999999988743 378999999863
Q ss_pred CCC----------------CCceeEEEEEECcccC
Q psy8342 188 RLT----------------RDDFLGMVELSLLNLP 206 (225)
Q Consensus 188 ~~~----------------~d~~lG~~~i~l~~l~ 206 (225)
... .+..||-+.+.|-+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~ 123 (178)
T cd08399 89 APALSSKKSAESPSSESKGKHQLLYYVNLLLIDHR 123 (178)
T ss_pred cCcccccccccccccccccccceEEEEEEEEEcCC
Confidence 211 2457788888877644
No 143
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=95.85 E-value=0.053 Score=40.44 Aligned_cols=67 Identities=21% Similarity=0.373 Sum_probs=46.0
Q ss_pred EEeCCCCccC--cccCceecCC-CCCeeccEEEEEecC----CCcEEEEEEEEccCCCCC----ceeEEEEEECcccC
Q psy8342 140 NTVNGDQTID--SALTKTRKKT-LNPVWNEEFIFRVKP----SEHKLVFQVFDMNRLTRD----DFLGMVELSLLNLP 206 (225)
Q Consensus 140 ~~~~~~~~~~--~~kT~v~~~~-~~P~Wne~f~f~v~~----~~~~L~v~V~d~d~~~~d----~~lG~~~i~l~~l~ 206 (225)
.+..|...+. ...|+...-+ ..+.|||.+.|++.- .+..|.|+||..+..... ..||.+.++|-+..
T Consensus 9 ~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~ 86 (142)
T PF00792_consen 9 QLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYR 86 (142)
T ss_dssp EEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TT
T ss_pred EEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCC
Confidence 3444544443 2256555555 799999999999763 357899999998766554 69999999988764
No 144
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=95.77 E-value=0.042 Score=41.93 Aligned_cols=54 Identities=24% Similarity=0.309 Sum_probs=42.0
Q ss_pred cCceecCCCCCeeccEEEEEecCC----CcEEEEEEEEccCCCCCceeEEEEEECccc
Q psy8342 152 LTKTRKKTLNPVWNEEFIFRVKPS----EHKLVFQVFDMNRLTRDDFLGMVELSLLNL 205 (225)
Q Consensus 152 kT~v~~~~~~P~Wne~f~f~v~~~----~~~L~v~V~d~d~~~~d~~lG~~~i~l~~l 205 (225)
.|+.+.-+..+.|||.+.|++.-. +..|.|+||+.+..++...+|.+.++|-+-
T Consensus 50 ~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 50 QTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred EccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 444444456688999999998743 478999999987655677999999998765
No 145
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=95.19 E-value=0.1 Score=40.23 Aligned_cols=93 Identities=20% Similarity=0.292 Sum_probs=59.0
Q ss_pred ccceeEeeeeeecCCcCCCCCC---eeEEEEeCCCCccCc-ccCceec----CCCCCeeccEEEEEecCC----CcEEEE
Q psy8342 114 TEQIRLRIIAGHSLAKKDIFGA---RIDLNTVNGDQTIDS-ALTKTRK----KTLNPVWNEEFIFRVKPS----EHKLVF 181 (225)
Q Consensus 114 ~~~l~v~vi~a~~L~~~d~~g~---~~~~~~~~~~~~~~~-~kT~v~~----~~~~P~Wne~f~f~v~~~----~~~L~v 181 (225)
...+.|+|..+.+++....... .+.+.+..|...+.. ..|+... -...+.|||.+.|++.-. +..|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 4567788888888876543212 334444555544322 2333211 123577999999987633 478999
Q ss_pred EEEEccCCC---------CCceeEEEEEECcccC
Q psy8342 182 QVFDMNRLT---------RDDFLGMVELSLLNLP 206 (225)
Q Consensus 182 ~V~d~d~~~---------~d~~lG~~~i~l~~l~ 206 (225)
++|+....+ .+..||.+.++|-+..
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~ 120 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR 120 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcch
Confidence 999876543 3568999999987753
No 146
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=94.82 E-value=0.27 Score=37.30 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=64.5
Q ss_pred CccceeEeeeeeecCCcCCCC--CC---eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCC-----------
Q psy8342 113 PTEQIRLRIIAGHSLAKKDIF--GA---RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSE----------- 176 (225)
Q Consensus 113 ~~~~l~v~vi~a~~L~~~d~~--g~---~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~----------- 176 (225)
....|.++|+.++-....-.. +. .+.+.+..+.+ +++|+.+..+.+|.|+|.|.|++....
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~Q---RF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~ll 83 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQ---RFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLL 83 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCc---eEecCCcccccCCCCCCcEEEEecccccccccchhHhh
Confidence 345677788777654322110 22 45555555544 689999999999999999999987541
Q ss_pred ---cEEEEEEEEccCCCCCceeEEEEEECcccCC
Q psy8342 177 ---HKLVFQVFDMNRLTRDDFLGMVELSLLNLPR 207 (225)
Q Consensus 177 ---~~L~v~V~d~d~~~~d~~lG~~~i~l~~l~~ 207 (225)
..|++.|---|..+...++|.-.+..+.+..
T Consensus 84 s~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~ 117 (156)
T PF15627_consen 84 SISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLC 117 (156)
T ss_pred cCCCceEEEEEEecCCCceEeeeeceehHHHHhc
Confidence 5788888777776666888888888776553
No 147
>KOG3209|consensus
Probab=94.80 E-value=0.021 Score=52.51 Aligned_cols=37 Identities=30% Similarity=0.791 Sum_probs=34.3
Q ss_pred ccCCCCCCCceeeeeCCCCcEEEeeecceeeeccccc
Q psy8342 63 EQQGALPPGWEERTDANGRTYYVNHIARCTQWERPTV 99 (225)
Q Consensus 63 ~~~~~LP~gwe~~~d~~gr~~yv~~~~~~~~w~~P~~ 99 (225)
+..++||..||-....+|.+||++|++++++|.+|+.
T Consensus 218 ~~~gplp~nwemayte~gevyfiDhntkttswLdprl 254 (984)
T KOG3209|consen 218 DNLGPLPHNWEMAYTEQGEVYFIDHNTKTTSWLDPRL 254 (984)
T ss_pred cccCCCCccceEeEeecCeeEeeecccccceecChhh
Confidence 4568899999999999999999999999999999984
No 148
>KOG1452|consensus
Probab=94.76 E-value=0.13 Score=43.16 Aligned_cols=93 Identities=18% Similarity=0.165 Sum_probs=60.8
Q ss_pred CCCccceeEeeeeeecCCcCCC-CCC--eeEEEEeCCCCccCcccCceecCCCCCeeccEEEEEecCCCcEEEEEEEEcc
Q psy8342 111 EEPTEQIRLRIIAGHSLAKKDI-FGA--RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMN 187 (225)
Q Consensus 111 ~~~~~~l~v~vi~a~~L~~~d~-~g~--~~~~~~~~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d 187 (225)
....|.|.++++.+++|....- .|. ..|+++....+ .+.+|.+.....-=.|.|+|+..+.+.+ .|.+-||.|+
T Consensus 47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drq--h~aRt~vrs~~~~f~w~e~F~~Dvv~~~-vl~~lvySW~ 123 (442)
T KOG1452|consen 47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQ--HPARTRVRSSGPGFAWAEDFKHDVVNIE-VLHYLVYSWP 123 (442)
T ss_pred ecccceEEEEEecccccccChhccCceeeeeeeeeeccc--CccccccccCCCCccchhhceeecccce-eeeEEEeecC
Confidence 3457899999999999965432 233 67777655432 2455655555555578899999888654 7888899999
Q ss_pred CCCCCceeEEEEEECcccC
Q psy8342 188 RLTRDDFLGMVELSLLNLP 206 (225)
Q Consensus 188 ~~~~d~~lG~~~i~l~~l~ 206 (225)
.-.++.++=...+.+..+.
T Consensus 124 pq~RHKLC~~g~l~~~~v~ 142 (442)
T KOG1452|consen 124 PQRRHKLCHLGLLEAFVVD 142 (442)
T ss_pred chhhccccccchhhhhhhh
Confidence 7766655333333333333
No 149
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=94.51 E-value=0.13 Score=40.35 Aligned_cols=61 Identities=15% Similarity=0.280 Sum_probs=44.8
Q ss_pred CCCCccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEEEEccCCCC--CceeEEEEEECc
Q psy8342 143 NGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVFDMNRLTR--DDFLGMVELSLL 203 (225)
Q Consensus 143 ~~~~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~d~d~~~~--d~~lG~~~i~l~ 203 (225)
.|......++|.|...+.+|.|+|++.+.++.. ...|.|+++....-.+ ...+|-+.+||-
T Consensus 47 ~g~~~~se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 47 SGEPPCSEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred CCCCccceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 344445568888899999999999999999864 4678888877543221 246788888874
No 150
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.22 E-value=0.74 Score=34.01 Aligned_cols=93 Identities=26% Similarity=0.363 Sum_probs=59.3
Q ss_pred CccceeEeeeeeecCCcCCCCCCeeEEEEeCCCCccCcccCceec-CCCCCeeccEEEEEecC----C-----CcEEEEE
Q psy8342 113 PTEQIRLRIIAGHSLAKKDIFGARIDLNTVNGDQTIDSALTKTRK-KTLNPVWNEEFIFRVKP----S-----EHKLVFQ 182 (225)
Q Consensus 113 ~~~~l~v~vi~a~~L~~~d~~g~~~~~~~~~~~~~~~~~kT~v~~-~~~~P~Wne~f~f~v~~----~-----~~~L~v~ 182 (225)
....+.+.+.+..+++. .+..+++...-+........|.... .+-.-.|||.|.+.+.- . ...+.|.
T Consensus 5 ~kf~~~l~i~~l~~~p~---~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPS---SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eeEEEEEEEEEeECcCC---CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 45667788888888876 2224555554443321122333322 45567999999988642 1 2567888
Q ss_pred EEEccCCCCCceeEEEEEECcccCCC
Q psy8342 183 VFDMNRLTRDDFLGMVELSLLNLPRE 208 (225)
Q Consensus 183 V~d~d~~~~d~~lG~~~i~l~~l~~~ 208 (225)
|+....-++...||.+.|+|.++...
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~ 107 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANE 107 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCc
Confidence 98875333436899999999999875
No 151
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=94.03 E-value=0.31 Score=38.02 Aligned_cols=56 Identities=21% Similarity=0.420 Sum_probs=35.3
Q ss_pred CcccCceecCCCCCeeccEEEEEecCC---CcEEEEEEEEccCCCCC---ceeEEEEEECcc
Q psy8342 149 DSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVFDMNRLTRD---DFLGMVELSLLN 204 (225)
Q Consensus 149 ~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~d~d~~~~d---~~lG~~~i~l~~ 204 (225)
..+.|.+..++.+|.|+|+|.+.++.. +..|.|++++...-.+. ..+|-+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 457788888889999999999999854 47899999986643221 689999999988
No 152
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=93.28 E-value=0.71 Score=35.51 Aligned_cols=83 Identities=12% Similarity=0.184 Sum_probs=53.7
Q ss_pred eeEEEEeCCCCccCcccCce--ecCCCCCeeccEEEEEecCCCcEEEEEEEEccCCCCCceeEEEEEECcccCCCCCCcc
Q psy8342 136 RIDLNTVNGDQTIDSALTKT--RKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESDGCV 213 (225)
Q Consensus 136 ~~~~~~~~~~~~~~~~kT~v--~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~ 213 (225)
.+++.+..++... .+|+. ......-.|||.|.+.+...-..|.|.||.... ..+.+|+++.+|+-..........
T Consensus 38 ~~~ikl~~N~k~V--~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~~~~~ 114 (168)
T PF15625_consen 38 RYYIKLFFNDKEV--SRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHTSTDN 114 (168)
T ss_pred eEEEEEEECCEEE--EeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCcccccccC
Confidence 4555555444332 33333 223444567899999998777899999999887 567899999999887765532211
Q ss_pred ccCeeEEc
Q psy8342 214 IHNKKYIL 221 (225)
Q Consensus 214 ~~~~w~~L 221 (225)
....||..
T Consensus 115 ~~~~~~eF 122 (168)
T PF15625_consen 115 VPLEEYEF 122 (168)
T ss_pred CceEeEEE
Confidence 12455554
No 153
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=93.21 E-value=0.39 Score=37.81 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=43.1
Q ss_pred CccCcccCceecCCCCCeeccEEEEEecCC---CcEEEEEEEEccCCC-C---CceeEEEEEECc
Q psy8342 146 QTIDSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVFDMNRLT-R---DDFLGMVELSLL 203 (225)
Q Consensus 146 ~~~~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~d~d~~~-~---d~~lG~~~i~l~ 203 (225)
.....++|.|...+.+|.|+|++.+.++.. ...|.|+++....-. + ...+|-+.+||-
T Consensus 50 ~~~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 50 EPIDEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred CcceeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 344567888888889999999999999864 478999998754321 1 246788888874
No 154
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=87.54 E-value=1.6 Score=33.81 Aligned_cols=52 Identities=23% Similarity=0.451 Sum_probs=38.5
Q ss_pred CceecCCCCCeeccEEEEEecCC---CcEEEEEEEEccCC-----CCCceeEEEEEECcc
Q psy8342 153 TKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVFDMNRL-----TRDDFLGMVELSLLN 204 (225)
Q Consensus 153 T~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~d~d~~-----~~d~~lG~~~i~l~~ 204 (225)
+.++....+|.|+|+|.+.++.. ...|.|++++...- .....+|-+.+||-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 33444448999999999998643 47899999986632 235688999999876
No 155
>KOG1327|consensus
Probab=87.35 E-value=0.63 Score=42.00 Aligned_cols=59 Identities=25% Similarity=0.520 Sum_probs=47.2
Q ss_pred cccCceecCCCCCeeccEEEEEecCCC-cEEEEEEEEccCC----CCCceeEEEEEECcccCCC
Q psy8342 150 SALTKTRKKTLNPVWNEEFIFRVKPSE-HKLVFQVFDMNRL----TRDDFLGMVELSLLNLPRE 208 (225)
Q Consensus 150 ~~kT~v~~~~~~P~Wne~f~f~v~~~~-~~L~v~V~d~d~~----~~d~~lG~~~i~l~~l~~~ 208 (225)
..+|.++.+.+||.|-+.|.+...... +.|++.++|.+.- ...+|+|++...|.++...
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~ 105 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSS 105 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhh
Confidence 358999999999999998877765443 7889999997754 4578999999998877643
No 156
>KOG3209|consensus
Probab=87.02 E-value=0.61 Score=43.35 Aligned_cols=71 Identities=25% Similarity=0.356 Sum_probs=48.6
Q ss_pred cCcccCCCCCeEEEeCCCCc--eeecCC---cccccCccc-cCCCCCCCceeeeeCCCCcEEEeeecceeeeccccccc
Q psy8342 29 RHRESADPDSWIIVDASTES--IVETPA---QPLFIGGVE-QQGALPPGWEERTDANGRTYYVNHIARCTQWERPTVHH 101 (225)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~-~~~~LP~gwe~~~d~~gr~~yv~~~~~~~~w~~P~~~~ 101 (225)
.|+-.-+..|-+|...|+++ .|--|+ .. . .-++ -...||.||+...+..-.+||++|+++.++++.|....
T Consensus 226 nwemayte~gevyfiDhntkttswLdprl~kka-K-~~eeckd~elPygWeki~dpiYg~yyvdHiN~~sq~enpvlea 302 (984)
T KOG3209|consen 226 NWEMAYTEQGEVYFIDHNTKTTSWLDPRLTKKA-K-PPEECKDQELPYGWEKIEDPIYGTYYVDHINRKSQYENPVLEA 302 (984)
T ss_pred cceEeEeecCeeEeeecccccceecChhhhccc-C-ChhhcccccccccccccCCccceeEEecccchhhhhccchhhc
Confidence 35555555566667777776 454444 00 0 0011 13569999999999989999999999999999987543
No 157
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=86.42 E-value=4.6 Score=28.06 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=25.9
Q ss_pred cCceecCCCCCeeccEEEEEecCC----CcEEEEEEEEcc
Q psy8342 152 LTKTRKKTLNPVWNEEFIFRVKPS----EHKLVFQVFDMN 187 (225)
Q Consensus 152 kT~v~~~~~~P~Wne~f~f~v~~~----~~~L~v~V~d~d 187 (225)
.|+.+.-...+.|||-+.|++.-. +..|.|++|+..
T Consensus 52 ~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 52 STSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred EecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 344444455689999999987643 478999999854
No 158
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=86.17 E-value=0.2 Score=43.77 Aligned_cols=74 Identities=30% Similarity=0.489 Sum_probs=53.0
Q ss_pred ccccCcccCCCCCeEEEeCCCC--ceeecCCcccccCccccCCCC-CCCceeeeeCCCCcEEEeeecceeeecccccccc
Q psy8342 26 EVSRHRESADPDSWIIVDASTE--SIVETPAQPLFIGGVEQQGAL-PPGWEERTDANGRTYYVNHIARCTQWERPTVHHT 102 (225)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L-P~gwe~~~d~~gr~~yv~~~~~~~~w~~P~~~~~ 102 (225)
..++|++-.+++|.+||=+.-+ +.|+-|..- ..|.+ ..| --+|.+...++|++||.|.+++.+.|..|...-.
T Consensus 13 ~~s~w~e~k~~dgRiYYYN~~T~kS~weKPkel--l~~~e--~~l~~~~Wke~~TadGkvyyyN~~TREs~W~iP~e~Kk 88 (590)
T COG5104 13 ARSEWEELKAPDGRIYYYNKRTGKSSWEKPKEL--LKGSE--EDLDVDPWKECRTADGKVYYYNSITRESRWKIPPERKK 88 (590)
T ss_pred HHHHHHHhhCCCCceEEEecccccccccChHHH--hcchH--hhhchhhHHHHhhcCCceEEecCccccccccCChhhhc
Confidence 3467999999999998865443 478777421 11211 122 2579999999999999999999999999975444
Q ss_pred C
Q psy8342 103 M 103 (225)
Q Consensus 103 ~ 103 (225)
+
T Consensus 89 V 89 (590)
T COG5104 89 V 89 (590)
T ss_pred c
Confidence 3
No 159
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=84.60 E-value=2.8 Score=32.59 Aligned_cols=56 Identities=20% Similarity=0.388 Sum_probs=41.2
Q ss_pred CcccCceecCCCCCeeccEEEEEecCC---CcEEEEEEEEccCCCC------CceeEEEEEECcc
Q psy8342 149 DSALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVFDMNRLTR------DDFLGMVELSLLN 204 (225)
Q Consensus 149 ~~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~d~d~~~~------d~~lG~~~i~l~~ 204 (225)
....|.|...+.+|.|+|++.+.++.. ...|.|++++.+.-.+ ...+|-+.+||-.
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 356788888899999999999998854 3678899887443211 2468888888753
No 160
>KOG0940|consensus
Probab=83.53 E-value=1.3 Score=38.30 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=50.4
Q ss_pred ecCCCCCccccccCcccCCCCC---eEEEeCCCCc---eeecCCcccccCcc-c----cCC--CCCCCceeeeeCCCCcE
Q psy8342 17 RLSDHETNLEVSRHRESADPDS---WIIVDASTES---IVETPAQPLFIGGV-E----QQG--ALPPGWEERTDANGRTY 83 (225)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~-~----~~~--~LP~gwe~~~d~~gr~~ 83 (225)
.|+.+.+.++. +|....+.+| |.++-++... .|.+|.+.. ..+. . ..+ +| ++||.+.+..|..+
T Consensus 53 ee~ldy~glpr-ewf~~lS~e~~~p~~~~~~~~~~~~tlq~~P~sg~-~p~~l~~~~~vg~~~~l-~~~h~~~~~~g~r~ 129 (358)
T KOG0940|consen 53 EEGLDYGGLPR-EWFFLLSHEGFNPWYGLFQHSRKDYTLWLNPRSGV-NPGHLTYFRFVGGVLAL-AGWHMRFTDTGQRP 129 (358)
T ss_pred ccccccCCCCc-ceeeeeccccCCcceeeeeecccccccccCCccCC-CCCcccccccccccccc-cceeeEecCCCcee
Confidence 44433444444 4888877766 7777665544 455554310 0000 0 111 23 38999999999999
Q ss_pred EEeeecceeeecccccc
Q psy8342 84 YVNHIARCTQWERPTVH 100 (225)
Q Consensus 84 yv~~~~~~~~w~~P~~~ 100 (225)
|++|..+.+.|.+|...
T Consensus 130 F~~~i~~ktt~ldd~e~ 146 (358)
T KOG0940|consen 130 FYKHILKKTTTLDDREA 146 (358)
T ss_pred hhhhhhcCccccCchhh
Confidence 99999888888888754
No 161
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=82.80 E-value=2.9 Score=28.75 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=33.3
Q ss_pred CCCeeccEEEEEecCCCcEEEEEEEEccCCCCCceeEEEEEECcccC
Q psy8342 160 LNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLP 206 (225)
Q Consensus 160 ~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~~lG~~~i~l~~l~ 206 (225)
.+..|++.|.|++... +.|.|.||-.|. ..+.|-..+-|.+..
T Consensus 31 s~q~WDQ~Fti~LdRs-RELEI~VywrD~---RslCav~~lrLEd~~ 73 (98)
T cd08687 31 SNQAWDQSFTLELERS-RELEIAVYWRDW---RSLCAVKFLKLEDER 73 (98)
T ss_pred ccccccceeEEEeecc-cEEEEEEEEecc---hhhhhheeeEhhhhc
Confidence 4778999999999875 489999997664 346677778777743
No 162
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=81.69 E-value=7.4 Score=30.44 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=41.5
Q ss_pred cccCceecCCCCCeeccEEEEEecCC---CcEEEEEEEEccCC--C-------CCceeEEEEEECcc
Q psy8342 150 SALTKTRKKTLNPVWNEEFIFRVKPS---EHKLVFQVFDMNRL--T-------RDDFLGMVELSLLN 204 (225)
Q Consensus 150 ~~kT~v~~~~~~P~Wne~f~f~v~~~---~~~L~v~V~d~d~~--~-------~d~~lG~~~i~l~~ 204 (225)
...|.|...+.+|.|.|++.+.++.. ...|.|++|+.+.- . ....+|-+.+||-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 56788888889999999999998754 46789999986521 1 12468888888865
No 163
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=78.26 E-value=0.83 Score=40.08 Aligned_cols=31 Identities=35% Similarity=0.784 Sum_probs=27.9
Q ss_pred CCCCceeeeeCCCCcEEEeeecceeeecccc
Q psy8342 68 LPPGWEERTDANGRTYYVNHIARCTQWERPT 98 (225)
Q Consensus 68 LP~gwe~~~d~~gr~~yv~~~~~~~~w~~P~ 98 (225)
.-..|++..+++||+||.|..++..+|+.|.
T Consensus 13 ~~s~w~e~k~~dgRiYYYN~~T~kS~weKPk 43 (590)
T COG5104 13 ARSEWEELKAPDGRIYYYNKRTGKSSWEKPK 43 (590)
T ss_pred HHHHHHHhhCCCCceEEEecccccccccChH
Confidence 3356999999999999999999999999995
No 164
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=71.46 E-value=7.2 Score=27.63 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=31.5
Q ss_pred cccCceecCCCCCeeccEEEEEecCCC--------cEEEEEEEEccCCCCCceeEEEEEECcccCCC
Q psy8342 150 SALTKTRKKTLNPVWNEEFIFRVKPSE--------HKLVFQVFDMNRLTRDDFLGMVELSLLNLPRE 208 (225)
Q Consensus 150 ~~kT~v~~~~~~P~Wne~f~f~v~~~~--------~~L~v~V~d~d~~~~d~~lG~~~i~l~~l~~~ 208 (225)
...|.++. +.+|.+|-+-.|.|...+ ..+.|+++.-- ......+|.+.+++..+...
T Consensus 12 tq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~ 76 (107)
T PF11618_consen 12 TQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLES 76 (107)
T ss_dssp -EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH-
T ss_pred eeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcC
Confidence 35566666 789999999999988653 67899998865 23467899999999987743
No 165
>KOG0940|consensus
Probab=68.37 E-value=7.3 Score=33.78 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=32.2
Q ss_pred CCCCCCCceeeeeCCC---CcEEEeeecc-eeeecccccc
Q psy8342 65 QGALPPGWEERTDANG---RTYYVNHIAR-CTQWERPTVH 100 (225)
Q Consensus 65 ~~~LP~gwe~~~d~~g---r~~yv~~~~~-~~~w~~P~~~ 100 (225)
-+.||.+|..+.+..| ..+|.+|.+. .++|.+|...
T Consensus 58 y~glprewf~~lS~e~~~p~~~~~~~~~~~~tlq~~P~sg 97 (358)
T KOG0940|consen 58 YGGLPREWFFLLSHEGFNPWYGLFQHSRKDYTLWLNPRSG 97 (358)
T ss_pred cCCCCcceeeeeccccCCcceeeeeecccccccccCCccC
Confidence 4789999999999888 9999999888 6999999877
No 166
>KOG4334|consensus
Probab=59.45 E-value=12 Score=33.54 Aligned_cols=34 Identities=26% Similarity=0.600 Sum_probs=31.2
Q ss_pred CCCCCCCceeeeeCCCCcEEEeeecceeeecccc
Q psy8342 65 QGALPPGWEERTDANGRTYYVNHIARCTQWERPT 98 (225)
Q Consensus 65 ~~~LP~gwe~~~d~~gr~~yv~~~~~~~~w~~P~ 98 (225)
.++||-||-...-..|-..|+...++..+|.+|-
T Consensus 152 ~epLPeGW~~i~HnSGmPvylHr~tRVvt~SrPY 185 (650)
T KOG4334|consen 152 SEPLPEGWTVISHNSGMPVYLHRFTRVVTHSRPY 185 (650)
T ss_pred CCcCCCceEEEeecCCCceEEeeeeeeEeccCce
Confidence 4789999999999999999999999999999984
No 167
>KOG0904|consensus
Probab=56.23 E-value=21 Score=34.53 Aligned_cols=72 Identities=13% Similarity=0.294 Sum_probs=41.9
Q ss_pred cceeEeeeeeecCCcCCCCCC--eeEEEEeCCCCccCc-ccCceecCCCCCeeccEEEEEecCCC----cEEEEEEEEc
Q psy8342 115 EQIRLRIIAGHSLAKKDIFGA--RIDLNTVNGDQTIDS-ALTKTRKKTLNPVWNEEFIFRVKPSE----HKLVFQVFDM 186 (225)
Q Consensus 115 ~~l~v~vi~a~~L~~~d~~g~--~~~~~~~~~~~~~~~-~kT~v~~~~~~P~Wne~f~f~v~~~~----~~L~v~V~d~ 186 (225)
..++++++.+.++........ .+...+..|.....+ ..|.-+..+.+|.||+.+.|.+.-.+ ..|.|.||.-
T Consensus 343 ~~frI~l~~is~~n~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v 421 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNLPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYAV 421 (1076)
T ss_pred CceEEEEeeccccCCCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeEe
Confidence 445566665544322111111 233345567665544 45555666889999999999886432 5577777753
No 168
>KOG0694|consensus
Probab=55.90 E-value=2.7 Score=39.08 Aligned_cols=54 Identities=13% Similarity=-0.047 Sum_probs=36.3
Q ss_pred cCceecCCCCCeeccEEEEEecCCCcEEEEEEEEccCCCCCceeEEEEEECcccC
Q psy8342 152 LTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLP 206 (225)
Q Consensus 152 kT~v~~~~~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~~lG~~~i~l~~l~ 206 (225)
.+.+.+.+..|.|+++|.+++... ..+.|.|+.......+.+...+.+...+++
T Consensus 43 ~~~~~~~~~~~~~~~~F~~~v~~~-~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k 96 (694)
T KOG0694|consen 43 ENMTKVELRIPELRETFHVEVVAG-GAKNIIVLLKSPDPKALSEAQLSLQEESQK 96 (694)
T ss_pred cccCCCCCCCchhhhheeeeeecC-CceEEEEEecCCcchhhHHHhHHHHHHHHH
Confidence 344467889999999999997654 478888888665555544444444444444
No 169
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=53.03 E-value=1e+02 Score=23.51 Aligned_cols=43 Identities=28% Similarity=0.382 Sum_probs=32.4
Q ss_pred CCCeeccEEEEEecCCC----cEEEEEEEEccCCCCCceeEEEEEEC
Q psy8342 160 LNPVWNEEFIFRVKPSE----HKLVFQVFDMNRLTRDDFLGMVELSL 202 (225)
Q Consensus 160 ~~P~Wne~f~f~v~~~~----~~L~v~V~d~d~~~~d~~lG~~~i~l 202 (225)
-.-+||.-|.+.+.... -.|.|+||..|..+++.+.|=..+.|
T Consensus 55 ~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 55 DVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred CceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeEEeEEeEEEe
Confidence 34579988877765332 57999999999999988887665555
No 170
>KOG1329|consensus
Probab=52.86 E-value=14 Score=35.61 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=53.0
Q ss_pred ccCceecCC-CCCeeccEEEEEecCCCcEEEEEEEEccCCCCCceeEEEEEECcccCCCCCCccccCeeEEc
Q psy8342 151 ALTKTRKKT-LNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYIL 221 (225)
Q Consensus 151 ~kT~v~~~~-~~P~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L 221 (225)
.+|....+. .+|.|.+.|..........+.+.|-+.+..+...++|.+.+++..+..+... .+||.+
T Consensus 152 ~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~----~~~~~I 219 (887)
T KOG1329|consen 152 RRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRI----GGWFPI 219 (887)
T ss_pred hchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccc----cceeee
Confidence 345555555 7899999998887777788999999888887678999999999998877544 677765
No 171
>KOG3552|consensus
Probab=49.47 E-value=3.4 Score=39.86 Aligned_cols=34 Identities=41% Similarity=0.931 Sum_probs=27.6
Q ss_pred CCCCCCCceeeeeCCCCcEEEeeecceeeecccc
Q psy8342 65 QGALPPGWEERTDANGRTYYVNHIARCTQWERPT 98 (225)
Q Consensus 65 ~~~LP~gwe~~~d~~gr~~yv~~~~~~~~w~~P~ 98 (225)
...+++||+...|+.||-||++|....+....|.
T Consensus 17 ~~~v~~~~~r~~dsk~r~~y~~~~~~~~~~~~~~ 50 (1298)
T KOG3552|consen 17 HEELSYGWERAIDSKGRSYYINHLNKTTTYEAPE 50 (1298)
T ss_pred ccccchHHHHhhhcccchhHHhhcCCccCcCCCc
Confidence 3669999999999999999999877766655543
No 172
>KOG4027|consensus
Probab=37.17 E-value=1.9e+02 Score=22.16 Aligned_cols=46 Identities=22% Similarity=0.240 Sum_probs=30.5
Q ss_pred CCCCC-eeccEEEEEecCCC----cEEEEEEEEccCCCCCceeEEEEEECc
Q psy8342 158 KTLNP-VWNEEFIFRVKPSE----HKLVFQVFDMNRLTRDDFLGMVELSLL 203 (225)
Q Consensus 158 ~~~~P-~Wne~f~f~v~~~~----~~L~v~V~d~d~~~~d~~lG~~~i~l~ 203 (225)
+-.+| +||--++..+.... -.|.+.||..|-+++|-..|-..+.+-
T Consensus 59 ~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg~~hiP 109 (187)
T KOG4027|consen 59 GADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYGMLHIP 109 (187)
T ss_pred cCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeeeeEecC
Confidence 33344 56654444443221 578999999999999988887666654
No 173
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=35.64 E-value=45 Score=21.99 Aligned_cols=22 Identities=32% Similarity=0.702 Sum_probs=14.2
Q ss_pred CCCCCCCceeeee--------CCCCcEEEe
Q psy8342 65 QGALPPGWEERTD--------ANGRTYYVN 86 (225)
Q Consensus 65 ~~~LP~gwe~~~d--------~~gr~~yv~ 86 (225)
..+||.||+...- ..+.+||+.
T Consensus 5 ~~Plp~GW~R~~~~r~~g~~~~~~dV~Y~s 34 (77)
T smart00391 5 RLPLPCGWRRETKQRKSGRSAGKFDVYYIS 34 (77)
T ss_pred cCCCCCCcEEEEEEecCCCCCCcccEEEEC
Confidence 4569999976642 245666763
No 174
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=34.19 E-value=66 Score=21.13 Aligned_cols=24 Identities=13% Similarity=0.321 Sum_probs=19.6
Q ss_pred EEEEEEEEccCCCCCceeEEEEEE
Q psy8342 178 KLVFQVFDMNRLTRDDFLGMVELS 201 (225)
Q Consensus 178 ~L~v~V~d~d~~~~d~~lG~~~i~ 201 (225)
...|.+|+.|.+..|++|+.+...
T Consensus 13 ~~~V~L~e~d~~~~Ddll~~~~Td 36 (80)
T PF01060_consen 13 NVKVKLWEDDYFDPDDLLDETKTD 36 (80)
T ss_pred CCEEEEEECCCCCCCceeEEEEEC
Confidence 456899999988889999987663
No 175
>KOG4286|consensus
Probab=31.40 E-value=14 Score=34.96 Aligned_cols=29 Identities=34% Similarity=0.834 Sum_probs=26.0
Q ss_pred ceeeeeCCCCcEEEeeecceeeecccccc
Q psy8342 72 WEERTDANGRTYYVNHIARCTQWERPTVH 100 (225)
Q Consensus 72 we~~~d~~gr~~yv~~~~~~~~w~~P~~~ 100 (225)
|+...+.+--.|||||.+..++|.+|...
T Consensus 354 w~rais~nkvpyyinh~~q~t~wdhp~~t 382 (966)
T KOG4286|consen 354 WERAISPNKVPYYINHETQTTCWDHPKMT 382 (966)
T ss_pred chhccCccccchhhcccchhhhccchHHH
Confidence 88888888899999999999999999743
No 176
>TIGR02914 EpsI_fam EpsI family protein. In Methylobacillus sp strain 12S, EpsI is encoded immediately downstream of the multiple-membrane-spanning putative transporter EpsH, and is predicted to be a periplasmic protein involved in, but not required for, expression of the exopolysaccharide methanolan. In a number of other species, protein homologous to EpsI is encoded either next to EpsH or, more often, combined in a fused gene. We have proposed renaming EpsH, or the EpsHI fusion protein, to exosortase, based on its phylogenetic association with the PEP-CTERM proposed protein targeting signal.
Probab=30.95 E-value=92 Score=23.74 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=25.0
Q ss_pred EEEEEEEEeecCCCCCccccccCcccCCCCCeEEEeCC
Q psy8342 8 FLELYHAYLRLSDHETNLEVSRHRESADPDSWIIVDAS 45 (225)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (225)
.+.||+||.+++....++.. ++.+....||.++...
T Consensus 43 ~V~l~vayy~~Q~~~~~ihs--p~~Clp~~GW~~~~~~ 78 (174)
T TIGR02914 43 VVGLYIAYYRDQRQGAELHS--PENCLPGSGWAWLSSA 78 (174)
T ss_pred EEEEEEEecccCcCCCCccC--cccccCCCCcEEeecC
Confidence 57899999998875444433 4566655689888654
No 177
>KOG0906|consensus
Probab=29.27 E-value=56 Score=30.76 Aligned_cols=42 Identities=31% Similarity=0.533 Sum_probs=34.0
Q ss_pred eeccEEEEEecCCC----cEEEEEEEEccCCCCCceeEEEEEECcc
Q psy8342 163 VWNEEFIFRVKPSE----HKLVFQVFDMNRLTRDDFLGMVELSLLN 204 (225)
Q Consensus 163 ~Wne~f~f~v~~~~----~~L~v~V~d~d~~~~d~~lG~~~i~l~~ 204 (225)
.|||-+.+++...+ ..|.|++||...-.+..|+|..++.+..
T Consensus 78 ~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 78 NWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred chhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 49999999887543 7899999998776777899998887654
No 178
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=27.27 E-value=1.2e+02 Score=19.80 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=16.2
Q ss_pred CceeeeEEEEEEEEeecCCC
Q psy8342 2 RSKVKGFLELYHAYLRLSDH 21 (225)
Q Consensus 2 ~s~~~g~~~~~~~~~~~~~~ 21 (225)
++-+||||.+-|+.+...|.
T Consensus 28 ~~G~kGYlKv~i~Vlg~GD~ 47 (72)
T PF08151_consen 28 SAGVKGYLKVDISVLGPGDE 47 (72)
T ss_pred ccCCceEEEEEEEEEcCCCc
Confidence 46789999999988887763
No 179
>PF03621 MbtH: MbtH-like protein; InterPro: IPR005153 This domain is found in the MbtH protein O05821 from SWISSPROT as well as at the N terminus of the antibiotic synthesis protein NIKP1. This domain is about 70 amino acids long and contains 3 fully conserved tryptophan residues. Many of the members of this family are found in known antibiotic synthesis gene clusters.; PDB: 2PST_X 2GPF_A 2LPD_A 2KHR_A.
Probab=23.90 E-value=1.1e+02 Score=18.80 Aligned_cols=28 Identities=11% Similarity=0.397 Sum_probs=15.3
Q ss_pred CeEEEeCCCCc--eeecCCcccccCccccCCCCCCCceeeee
Q psy8342 38 SWIIVDASTES--IVETPAQPLFIGGVEQQGALPPGWEERTD 77 (225)
Q Consensus 38 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~LP~gwe~~~d 77 (225)
.+.+|.++..+ .|.. ..++|.||+....
T Consensus 12 ~f~VlvN~e~QySlWP~------------~~~vP~GW~~~~G 41 (54)
T PF03621_consen 12 TFLVLVNDEGQYSLWPA------------FRPVPAGWRAVFG 41 (54)
T ss_dssp -EEEEEETT-SEEEEET------------TS---TTEEEEEE
T ss_pred eEEEEEcCCCCeeeCcC------------CCCCCCCcceeeC
Confidence 47777777766 4421 2679999998743
Done!