RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8342
(225 letters)
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 117 bits (294), Expect = 1e-33
Identities = 59/122 (48%), Positives = 76/122 (62%), Gaps = 8/122 (6%)
Query: 111 EEPTEQIRLRIIAGHSLAKKDIFGA-----RIDLNTVNGDQTIDSALTKTRKKTLNPVWN 165
EE + +R+R+IAG LAKKDI GA R+ L + + S TKT KK+LNP WN
Sbjct: 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYD-PMNGVLTSVQTKTIKKSLNPKWN 74
Query: 166 EEFIFRVKPSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRE--SDGCVIHNKKYILRP 223
EE +FRV P +H+L+F+VFD NRLTRDDFLG V++ L LP E K ++L P
Sbjct: 75 EEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHP 134
Query: 224 RR 225
R
Sbjct: 135 RS 136
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 110 bits (276), Expect = 1e-30
Identities = 56/121 (46%), Positives = 74/121 (61%), Gaps = 8/121 (6%)
Query: 112 EPTEQIRLRIIAGHSLAKKDIFGA-----RIDLNTVNGDQTIDSALTKTRKKTLNPVWNE 166
+ T +R+++IAG LAKKDI GA R+ L + S TKT KK+LNP WNE
Sbjct: 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSG-ILTSVQTKTIKKSLNPKWNE 63
Query: 167 EFIFRVKPSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESDGCVI--HNKKYILRPR 224
E +FRV P H+++F+VFD NRLTRDDFLG V++ L LP E+ K ++L PR
Sbjct: 64 EILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPR 123
Query: 225 R 225
Sbjct: 124 S 124
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 103 bits (258), Expect = 2e-28
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 18/127 (14%)
Query: 104 SSNNSAPEEPTEQIRLRIIAGHSLAKKDIFG-----ARIDLNTVNGDQTIDSALTKTRKK 158
SS +S + ++++++ L D G ++L G+ + T T K
Sbjct: 2 SSGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLEL----GNDRL---QTHTVYK 54
Query: 159 TLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKK 218
LNP WN+ F F +K L VFD + DFLG V + LL++
Sbjct: 55 NLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQP------NC 108
Query: 219 YILRPRR 225
Y+L+ +
Sbjct: 109 YVLKNKD 115
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 97.8 bits (244), Expect = 3e-26
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 11/97 (11%)
Query: 117 IRLRIIAGHSLAKKDIFG-----ARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFR 171
+ + +++ L D ++ Q S P WNE FIF
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTC----RTQDQKS--NVAEGMGTTPEWNETFIFT 65
Query: 172 VKPSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRE 208
V +L ++FD + T DD +G + L + E
Sbjct: 66 VSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVE 102
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 95.9 bits (239), Expect = 1e-25
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
Query: 113 PTEQIRLRIIAGHSLAKKDIFG-----ARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEE 167
+IRL ++ +LAKKD F A+I V+G S T T K TL+P WN+
Sbjct: 3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKI---VVDGSGQCHS--TDTVKNTLDPKWNQH 57
Query: 168 FIFRVKPSEHKLVFQVFDMNRLTRDD---FLGMVELSLLNLPRESDG 211
+ V ++ + V++ ++ + FLG V L + R D
Sbjct: 58 YDLYVGKTD-SITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDT 103
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 96.1 bits (239), Expect = 4e-25
Identities = 23/150 (15%), Positives = 48/150 (32%), Gaps = 20/150 (13%)
Query: 87 HIARCTQWERPTVHHTMSSNNSAPEEPTE------QIRLRIIAGHSLAKKDIFG-----A 135
H R ++ S++ + Q+++ +I+ K +
Sbjct: 2 HHHHHHSSGRENLYFQGMSDSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYV 61
Query: 136 RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDDFL 195
+ + Q+ T+ T +P W + V P KL F+V+ L D L
Sbjct: 62 EVTV----DGQSKK---TEKCNNTNSPKWKQPLTVIVTPVS-KLHFRVWSHQTLKSDVLL 113
Query: 196 GMVELSLLNLPRESDGCVIHNKKYILRPRR 225
G L + + ++ + L+
Sbjct: 114 GTAALDIYETLKSNNMKL-EEVVVTLQLGG 142
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 92.2 bits (229), Expect = 6e-24
Identities = 32/142 (22%), Positives = 47/142 (33%), Gaps = 29/142 (20%)
Query: 100 HHTMSSNNSAPEEPTEQIRLRIIAGHSLAKKDIFG-----ARIDLNTVNGDQTIDSALTK 154
S + + +I + ++ L KD G + + G TK
Sbjct: 2 FAVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQV----GKTKKR---TK 54
Query: 155 TRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMN-----------RLTRDDFLGMVELSLL 203
T LNPVW E F F S ++ +V D + + DDFLG + +
Sbjct: 55 TIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVR 114
Query: 204 NLPRESDGCVIHNKKYILRPRR 225
L E D Y L R
Sbjct: 115 TLSGEMDVW------YNLDKRT 130
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 89.3 bits (222), Expect = 6e-23
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 114 TEQIRLRIIAGHSLAKKDIFGA-----RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEF 168
E++ + + +L D G ++ L + + TKT + TLNP WNE F
Sbjct: 15 DEKLHVTVRDAKNLIPMDPNGLSDPYVKLKL--IPDPKNESKQKTKTIRSTLNPQWNESF 72
Query: 169 IFRVKPS--EHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRES 209
F++KPS + +L +++D +R TR+DF+G + + L +
Sbjct: 73 TFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMP 115
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 82.7 bits (204), Expect = 3e-20
Identities = 28/141 (19%), Positives = 41/141 (29%), Gaps = 10/141 (7%)
Query: 93 QWERPTVHHTMSSNNSAPEEPTEQIRLRIIAGHSLAKKDIFGARIDLNTVNGDQ------ 146
+ S +S + +R+RI L +
Sbjct: 7 HHHHSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTV 66
Query: 147 TIDSAL---TKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDDFLGMVELSLL 203
++D T T++KT P +NEEF V L VF L D F+ L
Sbjct: 67 SVDQVRVGQTSTKQKTNKPTYNEEFCANV-TDGGHLELAVFHETPLGYDHFVANCTLQFQ 125
Query: 204 NLPRESDGCVIHNKKYILRPR 224
L R + L P
Sbjct: 126 ELLRTTGASDTFEGWVDLEPE 146
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 80.2 bits (198), Expect = 2e-19
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 17/101 (16%)
Query: 117 IRLRIIAGHSLAKKDIFG-----ARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFR 171
+R+ + + ++ K FG + + TK LNPVWNE F
Sbjct: 9 LRVIVESASNIPKTK-FGKPDPIVSVIFKD-------EKKKTKKVDNELNPVWNEILEFD 60
Query: 172 VKPSEH----KLVFQVFDMNRLTRDDFLGMVELSLLNLPRE 208
++ L V D + ++ +G ++L +L +
Sbjct: 61 LRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGD 101
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 79.1 bits (195), Expect = 5e-19
Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 13/112 (11%)
Query: 111 EEPTEQIRLRIIAGHSLAKKDIFGARIDLNTVNGDQTID-----------SALTKTRKKT 159
++++I SL + R + +D T T++KT
Sbjct: 2 VVFNGLLKIKICEAVSLKPTA-WSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKT 60
Query: 160 LNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESDG 211
+P W++EF+ V + VF + DDF+ + L +
Sbjct: 61 NSPAWHDEFVTDVCNGRK-IELAVFHDAPIGYDDFVANCTIQFEELLQNGSR 111
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 78.6 bits (194), Expect = 7e-19
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 11/77 (14%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSE---HKLVFQVFDMNRLTRDDFLGMVELSL--LNLPR 207
T +K+ L+ W E + + E L + +R +R G + L L ++P
Sbjct: 63 TALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPL 122
Query: 208 ESDGCVIHNKKYILRPR 224
+ L+
Sbjct: 123 GAAQW------GELKTS 133
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
PDB: 2lb2_A*
Length = 36
Score = 74.1 bits (183), Expect = 3e-18
Identities = 22/35 (62%), Positives = 23/35 (65%)
Query: 65 QGALPPGWEERTDANGRTYYVNHIARCTQWERPTV 99
LP GWEER DA GRTYYVNH R T W RP +
Sbjct: 2 SPGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPIM 36
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.22.1.1
Length = 40
Score = 74.3 bits (183), Expect = 3e-18
Identities = 17/38 (44%), Positives = 19/38 (50%)
Query: 61 GVEQQGALPPGWEERTDANGRTYYVNHIARCTQWERPT 98
G LPPGW+ GR YYVN T WERP+
Sbjct: 1 GSSGSSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPS 38
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 77.0 bits (190), Expect = 4e-18
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSEH--KLVFQVFDMNRLTRDDFLGMVELSLLNLPRES 209
TKT K +LNP WNE F F++K S+ +L +++D + +R+DF+G + + L +
Sbjct: 72 TKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 130
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 76.2 bits (188), Expect = 5e-18
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSE----HKLVFQVFDMNRLTRDDFLGMVELSLLNLPRE 208
T+ +KTL+P ++E F F P L F + +R +RDD +G V + L +
Sbjct: 62 TRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE-L 120
Query: 209 SDGCVIHNKKYILRPR 224
S+G ++ N++ I P
Sbjct: 121 SEGKMLMNREIISGPS 136
>1ymz_A CC45; artificial protein, computational design, unknown function;
NMR {Synthetic} SCOP: k.22.1.1
Length = 43
Score = 73.4 bits (181), Expect = 5e-18
Identities = 20/40 (50%), Positives = 23/40 (57%)
Query: 60 GGVEQQGALPPGWEERTDANGRTYYVNHIARCTQWERPTV 99
G + LPPGWE RTD G+ YY N T WERPT+
Sbjct: 1 GSHGRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTI 40
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three
stranded antiparallel beta sheet, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 73.4 bits (181), Expect = 5e-18
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 61 GVEQQGALPPGWEERTDANGRTYYVNHIARCTQWERPT 98
G LPPGWE+R D +GR YYV+H+ + T W+RP+
Sbjct: 1 GSSGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPS 38
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 75.5 bits (186), Expect = 1e-17
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSE---HKLVFQVFDMNRLTRDDFLGMVELSL 202
TK +KTLNPV+NE+F F+V SE LV V+D +R ++ D +G ++ +
Sbjct: 73 TKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM 125
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW
domain; NMR {Homo sapiens}
Length = 39
Score = 72.2 bits (178), Expect = 2e-17
Identities = 21/36 (58%), Positives = 24/36 (66%)
Query: 64 QQGALPPGWEERTDANGRTYYVNHIARCTQWERPTV 99
G LPPGWE R D GR YYV+H R T W+RPT+
Sbjct: 3 AMGPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTL 38
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Length = 36
Score = 71.7 bits (177), Expect = 2e-17
Identities = 22/35 (62%), Positives = 25/35 (71%)
Query: 65 QGALPPGWEERTDANGRTYYVNHIARCTQWERPTV 99
LPPGWEE+ D GRTYYVNH R TQW RP++
Sbjct: 2 SPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPSL 36
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 74.8 bits (184), Expect = 3e-17
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSE---HKLVFQVFDMNRLTRDDFLGMVELSL 202
TK +KTLNPV+NE+F F+V SE LV V+D +R ++ D +G ++ +
Sbjct: 81 TKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM 133
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 74.3 bits (183), Expect = 3e-17
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSE----HKLVFQVFDMNRLTRDDFLGMVELSL--LNLP 206
TK ++K LNP WNE F+F P E L QV D +R +R+D +G V + L ++L
Sbjct: 65 TKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLT 124
Query: 207 RESDGCVIHNKKYILRPR 224
+ L+P
Sbjct: 125 QMQTFW------KDLKPS 136
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 74.0 bits (182), Expect = 6e-17
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSE---HKLVFQVFDMNRLTRDDFLGMVELSL 202
T ++KT PV+ E + F + E L+ V D ++ +R +G V + L
Sbjct: 72 TGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPL 124
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 73.5 bits (181), Expect = 6e-17
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSE---HKLVFQVFDMNRLTRDDFLGMVELSLLNLPRES 209
T T+K+ LNP++NE F F + + ++ V D ++L+R+D +G + LS + P E
Sbjct: 57 TVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEV 116
Query: 210 DGCVIHNKKYILRPRR 225
H K I RPR+
Sbjct: 117 K----HWKDMIARPRQ 128
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 72.4 bits (178), Expect = 1e-16
Identities = 19/104 (18%), Positives = 42/104 (40%), Gaps = 14/104 (13%)
Query: 114 TEQIRLRIIAGHSLAK---KDIFG-----ARIDLNTVNGDQTIDSALTKTRKKTLNPVWN 165
+ + + ++ + K D+ + ++T + T+ +NPVWN
Sbjct: 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKR----TRHFNNDINPVWN 57
Query: 166 EEFIFRVKPSEHK-LVFQVFDMNRLTRDDFLGMVELSLLNLPRE 208
E F F + P++ L + D N + D+ LG ++ ++
Sbjct: 58 ETFEFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVG 100
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif,
liddle syndrome, proline-rich, ligase; NMR {Rattus
norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Length = 50
Score = 70.0 bits (172), Expect = 2e-16
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 63 EQQGALPPGWEERTDANGRTYYVNHIARCTQWERPTVHHT 102
G LPPGWEERT +GR +++NH + TQWE P + +
Sbjct: 7 NDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQNV 46
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; BAI1-associated protein 1
(BAP-1); NMR {Homo sapiens}
Length = 49
Score = 69.7 bits (171), Expect = 2e-16
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 63 EQQGALPPGWEERTDANGRTYYVNHIARCTQWERPTV 99
+ + LP GWE+ D YYV+HI R TQ+E P+
Sbjct: 9 DSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPSG 45
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 72.0 bits (177), Expect = 3e-16
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSE---HKLVFQVFDMNRLTRDDFLGMVELSL--LNLPR 207
T ++ T+NP+++E + + S L F V+ R R+ FLG E+ + L +
Sbjct: 65 TSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDK 124
Query: 208 ESDGCVIHNKKYILRPR 224
+ D C L +
Sbjct: 125 KLDHC------LPLHGK 135
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 71.7 bits (176), Expect = 4e-16
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSE----HKLVFQVFDMNRLTRDDFLGMVELSL 202
TK +K+LNP WN+ I++ E L V+D +R + +DFLG V + L
Sbjct: 68 TKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 73.7 bits (181), Expect = 7e-16
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSE---HKLVFQVFDMNRLTRDDFLGMVELSL--LNLPR 207
TK +KTLNPV+NE+F F+V SE LV V+D +R ++ D +G ++ + ++
Sbjct: 58 TKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH 117
Query: 208 ESDGCVIHNKK 218
++
Sbjct: 118 VTEEWRDLQSA 128
Score = 71.8 bits (176), Expect = 3e-15
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Query: 114 TEQIRLRIIAGHSLAKKDIFG-----ARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEF 168
++ + I+ +L K D+ G +I L + + + T +K TLNP +NE F
Sbjct: 149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHL--MQNGKRLKKKKTTIKKNTLNPYYNESF 206
Query: 169 IFRVKPSE---HKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRPRR 225
F V + ++V V D +++ ++D +G V + + E H + PRR
Sbjct: 207 SFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELR----HWSDMLANPRR 262
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human
modular domain, complex, HOST interaction, ligase; NMR
{Homo sapiens} PDB: 2kq0_A 2laj_A*
Length = 49
Score = 68.1 bits (167), Expect = 8e-16
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 63 EQQGALPPGWEERTDANGRTYYVNHIARCTQWERP 97
+QG LP GWE R NGR ++++H + T WE P
Sbjct: 8 IEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDP 42
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Length = 49
Score = 67.8 bits (166), Expect = 9e-16
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 60 GGVEQQGALPPGWEERTDANGRTYYVNHIARCTQWERPT 98
G + LPPGW GR YY++H T W P
Sbjct: 4 GSSGEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPL 42
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; MAGI1, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Length = 57
Score = 67.8 bits (166), Expect = 1e-15
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 63 EQQGALPPGWEERTDANGRTYYVNHIARCTQWERPTVHHTMSS 105
+ G LP WE NG Y+++H + T W P + S
Sbjct: 10 DNLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNKQQS 52
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Length = 41
Score = 67.6 bits (166), Expect = 1e-15
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 60 GGVEQQGALPPGWEERTDANGRTYYVNHIARCTQWERP 97
G Q LPPGWE R NGR ++++H + T WE P
Sbjct: 1 GSPGIQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDP 38
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; MAGI-1, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 60
Score = 67.6 bits (165), Expect = 1e-15
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 63 EQQGALPPGWEERTDANGRTYYVNHIARCTQWERPTVH-HTMSSNNSAPEE 112
+ + LP GWE+ D YYV+HI R TQ+E P + S P
Sbjct: 9 DSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLEAKRKKQLESGPSS 59
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR
{} SCOP: k.22.1.1
Length = 37
Score = 66.8 bits (164), Expect = 2e-15
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 66 GALPPGWEERTDANGRTYYVNHIARCTQWERPTV 99
LPPGW+E NG+TYY NH + + W P +
Sbjct: 2 MGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.22.1.1
Length = 40
Score = 66.9 bits (164), Expect = 2e-15
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 61 GVEQQGALPPGWEERTDANGRTYYVNHIARCTQWERPTV 99
G LP GWEE A+G Y++NH+ + T W P +
Sbjct: 1 GSSGSSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPVM 39
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 69.7 bits (171), Expect = 2e-15
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSE----HKLVFQVFDMNRLTRDDFLGMVELSLLNLPRE 208
TKT + T NPVWNE + E L V D ++ ++F+G SL L
Sbjct: 70 TKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKAN 129
Query: 209 S 209
Sbjct: 130 Q 130
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif,
binding affinity, signalling protein,ligase; NMR
{Drosophila melanogaster}
Length = 46
Score = 66.9 bits (164), Expect = 2e-15
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 61 GVEQQGALPPGWEERTDANGRTYYVNHIARCTQWERP 97
G ++ LPP W + NGRT++++H +R T W P
Sbjct: 4 GSGEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDP 40
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline
type II helix, PPII, ligase/signaling protein complex;
NMR {Homo sapiens} PDB: 2lb1_A
Length = 42
Score = 66.9 bits (164), Expect = 2e-15
Identities = 19/37 (51%), Positives = 22/37 (59%)
Query: 61 GVEQQGALPPGWEERTDANGRTYYVNHIARCTQWERP 97
G G LPPGWE R A GR Y+V+H R TQ+ P
Sbjct: 1 GPLGSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDP 37
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 72.2 bits (177), Expect = 2e-15
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 111 EEPTEQIRLRIIAGHSLAKKDIFGAR---IDLNTVNGDQTIDSALTKTRKKTLNPVWNEE 167
++Q+ +RI+ L KD G + + + + TK +KTLNP++NE
Sbjct: 16 LYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKK--KFQTKVHRKTLNPIFNET 73
Query: 168 FIFRVKPSE---HKLVFQVFDMNRLTRDDFLGMVELSLLN 204
F F V +E KL F V+D +R +R D +G V L L
Sbjct: 74 FQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLL 113
Score = 70.6 bits (173), Expect = 9e-15
Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 112 EPTEQIRLRIIAGHSLAKKDIFG-----ARIDLNTVNGDQTIDSALTKTRKKTLNPVWNE 166
+ + II +L D+ G + L ++ + + T +K TLNP +NE
Sbjct: 149 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASL--ISEGRRLKKRKTSIKKNTLNPTYNE 206
Query: 167 EFIFRVKPSE---HKLVFQVFDMNRLTRDDFLGMVELSL 202
+F V P L V D + + ++ +G+ +
Sbjct: 207 ALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGP 245
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 49
Score = 66.8 bits (163), Expect = 2e-15
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 64 QQGALPPGWEERTDANGRTYYVNHIARCTQWERPT 98
++ LPPGWE + TYYV+H + Q+ P+
Sbjct: 10 EREGLPPGWERVESSEFGTYYVDHTNKRAQYRHPS 44
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 69.2 bits (170), Expect = 2e-15
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSE----HKLVFQVFDMNRLTRDDFLGMVELSL--LNLP 206
TK +KT NP +NE ++ E +L V L + FLG + L L NL
Sbjct: 60 TKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLS 119
Query: 207 RESDG 211
+E+
Sbjct: 120 KETVK 124
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 69.8 bits (171), Expect = 2e-15
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Query: 114 TEQIRLRIIAGHSLAKKDIFGA-----RIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEF 168
++ + I+ +L K D+ G +I L + + + T +K TLNP +NE F
Sbjct: 24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHL--MQNGKRLKKKKTTIKKNTLNPYYNESF 81
Query: 169 IFRVKPSE---HKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRPRR 225
F V + ++V V D +++ ++D +G V + + + H + PRR
Sbjct: 82 SFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY----NSTGAELRHWSDMLANPRR 137
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling
protein-TRAN complex; NMR {Homo sapiens}
Length = 38
Score = 66.4 bits (163), Expect = 3e-15
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 65 QGALPPGWEERTDANGRTYYVNHIARCTQWERP 97
+G LP GWE+ +G YY+NH + T W P
Sbjct: 4 EGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDP 36
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 69.4 bits (170), Expect = 3e-15
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSE---HKLVFQVFDMNRLTRDDFLGMVELSLLNLPRES 209
T+ + V+NE F + L V +R ++ LG ++SL + R
Sbjct: 85 TRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSG 144
Query: 210 DGCV 213
+
Sbjct: 145 ERST 148
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain,
solution, complex, ligase/signaling protein complex;
NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB:
2op7_A
Length = 53
Score = 66.6 bits (163), Expect = 3e-15
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 52 TPAQPLFIGGVEQQGALPPGWEERTDANGRTYYVNHIARCTQWERP 97
+ + + +G LPPGWE R A G ++V+H R T +E P
Sbjct: 3 LGSPEFHMVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDP 48
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila
melanogaster} SCOP: b.72.1.1 b.72.1.1
Length = 88
Score = 67.2 bits (164), Expect = 4e-15
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 63 EQQGALPPGWEERTDANGRTYYVNHIARCTQWERPTVHHTMSSNNSAPEEPT 114
+ G LP GWE++ ++ R Y+VNH R TQWE P S + P
Sbjct: 8 DALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPP 59
Score = 63.7 bits (155), Expect = 8e-14
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 53 PAQPLFIGGVEQQGALPPGWEERTDANGRTYYVNHIARCTQWERP 97
P + +G LPPGWE R A G ++V+H R T +E P
Sbjct: 42 PRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDP 86
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka,
transcription; NMR {Oryzias latipes}
Length = 46
Score = 65.8 bits (161), Expect = 5e-15
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 65 QGALPPGWEERTDANGRTYYVNHIARCTQWERP 97
G LP GWE+ G YY+NH + T W P
Sbjct: 9 SGPLPEGWEQAITPEGEIYYINHKNKTTSWLDP 41
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 68.5 bits (168), Expect = 6e-15
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSE---HKLVFQVFDMNRLTRDDFLGMVELSLLNLPRES 209
T +K T N V+NE F+F + + F V D R +R++ +G + L
Sbjct: 71 THVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLG----ATAE 126
Query: 210 DGCVIHNKKYILRPRR 225
H K+ PRR
Sbjct: 127 GSGGGHWKEICDFPRR 142
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 68.7 bits (168), Expect = 8e-15
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVF-DMNRLTRDDFLGMVELSL--LNLPRES 209
T+ +KTL+P++ + +F P L V+ D R+ F+G+ ++ L L+L
Sbjct: 72 TRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMV 131
Query: 210 DG 211
G
Sbjct: 132 IG 133
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65
mutant, structural protein; NMR {Homo sapiens} SCOP:
b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Length = 46
Score = 65.0 bits (159), Expect = 1e-14
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 62 VEQQGALPPGWEERTDANGRTYYVNHIARCTQWERP 97
+ LP GWE ++G+ Y+ NHI + T W+ P
Sbjct: 3 IPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDP 38
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 71.5 bits (174), Expect = 1e-14
Identities = 18/105 (17%), Positives = 28/105 (26%), Gaps = 5/105 (4%)
Query: 100 HHTMSSNNSAPEEPTEQIRLRIIAGHSLAKKDIFGARIDLNTVNGDQTIDSALTKTRKKT 159
+ + + + + L L G Q T
Sbjct: 379 SKVTNQDCCPRQRGLAHLVVSNFRAEHLWGDYTTATDAYLKVFFGGQEFR---TGVVWNN 435
Query: 160 LNPVWNEEFIFRVKPSE--HKLVFQVFDMNRLTRDDFLGMVELSL 202
NP W ++ F L QV+D + DD LG + S
Sbjct: 436 NNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSP 480
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 67.8 bits (166), Expect = 1e-14
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSE---HKLVFQVFDMNRLTRDD--FLGMVELSL 202
T KKTLNPV+++ F F V E L V + D LG V ++L
Sbjct: 64 THVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVAL 118
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 67.8 bits (166), Expect = 1e-14
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSE---HKLVFQVFDMNRLTRDDFLGMVELSLLNLPRES 209
T+ +KKTLNP +NEEF + +K S+ L V+D + +D++G +L +
Sbjct: 78 TQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERL 137
Query: 210 DG 211
Sbjct: 138 KH 139
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: k.22.1.1
Length = 40
Score = 64.1 bits (157), Expect = 2e-14
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 61 GVEQQGALPPGWEERTDANGRTYYVNHIARCTQWERP 97
G LP GWE R +G Y+V+H R T + P
Sbjct: 1 GSSGSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDP 37
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 66.3 bits (162), Expect = 4e-14
Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSE--HKLVFQVFDMNRLTR-DDFLGMVELSLLNL 205
T+T +P ++E F F V+ + +L+ V++ +R +G + + +L
Sbjct: 67 TQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSL 122
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR
{Homo sapiens}
Length = 54
Score = 62.1 bits (151), Expect = 1e-13
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 64 QQGALPPGWEERTDANGRTYYVNHIARCTQWERPTVHHTMSSNNSAP 110
G LP GWE+ TD NG+ ++V+HI + T + P + T+ N + P
Sbjct: 8 VAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDNPTKP 54
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular
binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A*
2laz_A*
Length = 90
Score = 63.0 bits (153), Expect = 2e-13
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 64 QQGALPPGWEERTDANGRTYYVNHIARCTQWERPTVHHTMSSNNSAPEEP 113
LP G+E+RT G+ Y+++ + W P V +S+ N P
Sbjct: 6 SPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGP 55
Score = 61.4 bits (149), Expect = 7e-13
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 64 QQGALPPGWEERTDANGRTYYVNHIARCTQWERP 97
+ G LPPGWE R A GR Y+V+H R TQ+ P
Sbjct: 52 ELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDP 85
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 63.5 bits (155), Expect = 4e-13
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSEH----KLVFQVFDMNRL--TRDDFLGMVELSL 202
TKT KKTL P WN+ FI+ L ++D R+ +FLG + + L
Sbjct: 62 TKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIEL 117
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 63.1 bits (154), Expect = 4e-13
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSE----HKLVFQVFDMNRL--TRDDFLGMVELSL 202
TKT KKTL P WN+ FI+ L ++D R+ +FLG + + L
Sbjct: 59 TKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIEL 114
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain,
UBL-conjugation pathway, structural GE structural
genomics consortium, SGC, coiled coil; HET: MSE; 1.80A
{Homo sapiens}
Length = 109
Score = 62.3 bits (151), Expect = 5e-13
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 8/97 (8%)
Query: 2 RSKVKGFLELYHAYLRLSDHETNLEVSRHRESADPDSWIIVDASTESIVETPAQPLFIGG 61
+ L ++ R+ T L+ + D ++ E FI
Sbjct: 13 NPEFFTVLHANYSAYRVFTSSTCLKHMILKVRRDARNF-------ERYQHNRDLVNFINM 65
Query: 62 VEQ-QGALPPGWEERTDANGRTYYVNHIARCTQWERP 97
+ LP GWE +TD G++++V+H +R T + P
Sbjct: 66 FADTRLELPRGWEIKTDQQGKSFFVDHNSRATTFIDP 102
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein
binding; NMR {Homo sapiens}
Length = 92
Score = 57.4 bits (138), Expect = 2e-11
Identities = 13/50 (26%), Positives = 19/50 (38%)
Query: 66 GALPPGWEERTDANGRTYYVNHIARCTQWERPTVHHTMSSNNSAPEEPTE 115
W E +GRTYY N + + WE+P T + + E
Sbjct: 10 SGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKE 59
Score = 45.8 bits (108), Expect = 4e-07
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 56 PLFIGGVEQQGALPPGWEERTDANGRTYYVNHIARCTQWERP 97
P + +Q W+E +G+TYY N + ++W +P
Sbjct: 41 PDDLKTPAEQLLSKCPWKEYKSDSGKTYYYNSQTKESRWAKP 82
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear
protein, mRNA splicing, ribonucleoprotein; NMR
{Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Length = 75
Score = 53.7 bits (129), Expect = 3e-10
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 63 EQQGALPPGWEERTDANGRTYYVNHIARCTQWERP 97
E+ GW+ A+G+ YY N R T W P
Sbjct: 36 EELLLRENGWKAAKTADGKVYYYNPTTRETSWTIP 70
Score = 51.8 bits (124), Expect = 2e-09
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 71 GWEERTDANGRTYYVNHIARCTQWERPTVHHTMSSNNSAP 110
W+E DA+GR YY N + + + WE+P +
Sbjct: 3 IWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRE 42
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 56.9 bits (136), Expect = 1e-09
Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 14/117 (11%)
Query: 112 EPTEQIRLRIIAGHSLAKK---DIFG-----ARIDLNTVNGDQTIDSALTKTRKKTLNPV 163
+ + + + ++ + K D+ + ++T + T+ +NPV
Sbjct: 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKR----TRHFNNDINPV 70
Query: 164 WNEEFIFRVKPSEHK-LVFQVFDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKY 219
WNE F F + P++ L + D N + D+ LG ++ ++ V
Sbjct: 71 WNETFEFILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQ 126
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21,
WBP4, metal- binding, mRNA processing, mRNA splicing,
nucleus, polymorphism; NMR {Homo sapiens}
Length = 75
Score = 52.0 bits (124), Expect = 2e-09
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 68 LPPGWEERTDANGRTYYVNHIARCTQWERPTVHHTMSSNNSAPEEPTEQI 117
W E + G YY + I+ +QWE+P + E +
Sbjct: 3 SKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGL 52
Score = 41.6 bits (97), Expect = 1e-05
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 69 PPGWEERTDANGRTYYVNHIARCTQWERP 97
W E +G TYY N ++WE+P
Sbjct: 45 KTVWVEGLSEDGFTYYYNTETGESRWEKP 73
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter
release, RIM, MUNC13 domains, exocytosis, metal-binding;
1.44A {Rattus norvegicus} SCOP: b.7.1.1
Length = 131
Score = 49.6 bits (118), Expect = 4e-08
Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLP 206
T + + P W ++F+F + + L +V++ + D +G V + L +
Sbjct: 38 TIAVRGS-QPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMVGTVWIPLRTIR 89
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane,
phosphoprotein, SH3-binding, signaling protein; 3.00A
{Rattus norvegicus}
Length = 483
Score = 51.9 bits (123), Expect = 4e-08
Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 7/99 (7%)
Query: 116 QIRLRIIAGHSLAKKDIFGARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS 175
++L II L K + + L+ + W E F F P+
Sbjct: 12 VLKLWIIEARELPPKKRYYCELCLD---DMLYARTTSKPRSASGDTVFWGEHFEFNNLPA 68
Query: 176 EHKLVFQVF----DMNRLTRDDFLGMVELSLLNLPRESD 210
L ++ + + ++G+V + + L
Sbjct: 69 VRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHF 107
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 50.5 bits (120), Expect = 7e-08
Identities = 29/152 (19%), Positives = 44/152 (28%), Gaps = 14/152 (9%)
Query: 66 GALPPGWEERTDANGRTYYVNHIARCTQWERPT----VHHTMSSNNSAPEEPTEQIRLRI 121
++ WE N YY+NH + T W+ P NN ++LR
Sbjct: 10 TSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTELYQSLADLNNVRFSAYRTAMKLRR 69
Query: 122 I----AGHSLAKKDIFGARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEH 177
+ L+ A N DQ +D T+ +E V
Sbjct: 70 LQKALCLDLLSLSAACDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHNNLVNVPLC 129
Query: 178 -----KLVFQVFDMNRLTRDDFLGMVE-LSLL 203
+ V+D R R L + L
Sbjct: 130 VDMCLNWLLNVYDTGRTGRIRVLSFKTGIISL 161
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 49.2 bits (117), Expect = 9e-08
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 153 TKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLP-RESDG 211
T + + P W ++F+F + + L +V++ + D +G V + L + +G
Sbjct: 47 TIAVRGS-QPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMVGTVWIPLRTIRQSNEEG 104
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3;
Fe65-like protein 2, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Length = 39
Score = 45.8 bits (108), Expect = 1e-07
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 60 GGVEQQGALPPGWEERTDANGRTYYVNHIARCTQWERPT 98
G G LPPGW + DA G TYY + + TQW+RPT
Sbjct: 1 GSSGSSGGLPPGWRKIHDAAG-TYYWHVPSGSTQWQRPT 38
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B
member 1; triple-stranded beta-sheet; NMR {Homo sapiens}
SCOP: b.72.1.1
Length = 55
Score = 45.9 bits (108), Expect = 2e-07
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 63 EQQGALPPGWEERTDANGRTYYVNHIARCTQWERPTVHHT 102
E LP GW D +G TYY + TQWE P
Sbjct: 15 ETDSDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGRASP 53
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain
group IV, rotamase; NMR {Emericella nidulans}
Length = 54
Score = 44.9 bits (106), Expect = 4e-07
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 67 ALPPGWEERTD-ANGRTYYVNHIARCTQWERPT 98
LP GWE R + YY N R ++WE P
Sbjct: 7 GLPAGWEVRHSNSKNLPYYFNPATRESRWEPPA 39
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich
peptides, protein-protein interactions, structural
protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A
1zr7_A 2dyf_A
Length = 41
Score = 44.1 bits (104), Expect = 6e-07
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 61 GVEQQGALPPGWEERTDANGRTYYVNHIARCTQWERP 97
G+ W E +GRTYY N + + WE+P
Sbjct: 3 RRASVGSAKSMWTEHKSPDGRTYYYNTETKQSTWEKP 39
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.22.1.1
Length = 40
Score = 42.5 bits (100), Expect = 2e-06
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 61 GVEQQGALPPGWEERTDANGRTYYVNHIARCTQWERP 97
G W E +G+ YY N R + W +P
Sbjct: 1 GSSGSSGTEEIWVENKTPDGKVYYYNARTRESAWTKP 37
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 45.7 bits (107), Expect = 6e-06
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 11/121 (9%)
Query: 96 RPTVHHTMSSNNSAPEEPTEQIRLRIIAGHSLAKKDI-------FGARIDLNTVNGDQTI 148
P + P E++R+RII+G L K + ++++ V D
Sbjct: 478 DPNTTFNSRALTQGPWWRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGS 537
Query: 149 DSALTKTRK-KTLNPVWNEEFIFRVKPSEHKLV-FQVFDMNRLTRDDFLGMVELSLLNLP 206
T NP W+ EF F V + LV F V D + +++DF+G + +L
Sbjct: 538 RQ--TAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLK 595
Query: 207 R 207
+
Sbjct: 596 Q 596
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant
(R14A), oncogenic transformation, small molecule cycle,
rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo
sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A*
2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A*
3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A*
1f8a_B* ...
Length = 166
Score = 43.6 bits (103), Expect = 7e-06
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 68 LPPGWEERT-DANGRTYYVNHIARCTQWERPTVHHTMSSNNSAPEEPTEQIRLRII 122
LPPGWE+ ++GR YY NHI +QWERP+ SS + ++R +
Sbjct: 10 LPPGWEKAMSRSSGRVYYFNHITNASQWERPS--GNSSSGGKNGQGEPARVRCSHL 63
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 429
Score = 45.0 bits (107), Expect = 8e-06
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 12/86 (13%)
Query: 63 EQQGALPPGWEERTDANGRTYYVNHIARCTQWERPTVHHTMSSNNSAPEEPTEQIRLRII 122
Q G LP GWE R R Y+V+H + T W+ P + ++ N + +
Sbjct: 4 SQLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSLDQNVPQYKRDFRR------ 57
Query: 123 AGHSLAKKDIFGARIDLNTVNGDQTI 148
K F ++ L + G I
Sbjct: 58 ------KVIYFRSQPALRILPGQCHI 77
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1;
WW domain, beta sheet, Fe65, protein binding; 1.33A
{Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Length = 38
Score = 39.7 bits (92), Expect = 2e-05
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 68 LPPGWEERTDANGRTYYVNHIARCTQWERPT 98
LP GW D +G TYY + TQWE P
Sbjct: 4 LPAGWMRVQDTSG-TYYWHIPTGTTQWEPPG 33
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal
transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB:
2jup_W 2rly_W 2rm0_W 2nnt_A
Length = 37
Score = 39.3 bits (92), Expect = 2e-05
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 66 GALPPGWEERTDANGRTYYVNHIARCTQWERP 97
W E A+G+TYY N+ + WE+P
Sbjct: 2 ATAVSEWTEYKTADGKTYYYNNRTLESTWEKP 33
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain,
ordered linker; 1.60A {Candida albicans}
Length = 177
Score = 40.6 bits (95), Expect = 1e-04
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 68 LPPGWEER-TDANGRTYYVNHIARCTQWERPTV 99
LPP W R + ++ + Y++N + W+ P
Sbjct: 8 LPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYG 40
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.72.1.1
Length = 50
Score = 37.7 bits (87), Expect = 1e-04
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 72 WEERTDANGRTYYVNHIARCTQWERPTVHHTMSSNNSAP 110
W E + G YY + I+ +QWE+P S P
Sbjct: 9 WVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTSGP 47
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V
hearing, membrane, synapse, transmembrane, membrane
protein; 1.95A {Rattus norvegicus}
Length = 144
Score = 39.2 bits (91), Expect = 2e-04
Identities = 15/107 (14%), Positives = 39/107 (36%), Gaps = 11/107 (10%)
Query: 100 HHTMSSNNSAPEEPTEQIRLRIIAGHSLAKKDIFGARIDLNTVNGDQTIDSALTKTRKKT 159
HH S+ P + + + L + A++ S ++ +
Sbjct: 6 HHHHHSSGLVPRGSHMALIVHLKTVSELRGRADRIAKVTFRGQ-------SFYSRVLENC 58
Query: 160 LNPV-WNEEFIFRV--KPSEHK-LVFQVFDMNRLTRDDFLGMVELSL 202
+ ++E F + V ++ L Q+F+ +++ + +G + L
Sbjct: 59 EDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVL 105
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 3e-04
Identities = 41/228 (17%), Positives = 67/228 (29%), Gaps = 78/228 (34%)
Query: 34 ADPDSWIIVDASTESIVETPAQPLFIGGVEQQGA-----LPPGWEERTDANGR---TY-- 83
A+ DSW S V LF GV A LPP E + N +
Sbjct: 284 AETDSW----ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 84 YVNHIARCTQWERPTVHHTMSSNNSAPEEPTEQIRLR------IIAGH--SLAKKDIFGA 135
++++ + Q + V+ T N+ P +I L +++G SL +G
Sbjct: 340 SISNLTQE-QVQD-YVNKT---NSHLPAGKQVEISLVNGAKNLVVSGPPQSL-----YGL 389
Query: 136 RIDLNTV----NGDQT-----------------IDSA------LTKTRKKTLNPVWNEEF 168
+ L DQ+ + ++ L +
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV-ASPFHSHLLVPASDLINKDLVKNNV 448
Query: 169 IFRVKPSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESDGCVIHN 216
F K + V+D T D G +L R G +
Sbjct: 449 SFNAK----DIQIPVYD----TFD---G------SDL-RVLSGSISER 478
Score = 28.5 bits (63), Expect = 2.2
Identities = 17/126 (13%), Positives = 30/126 (23%), Gaps = 52/126 (41%)
Query: 10 ELYHAYLRLSDHETNLEVSRHRESADPDSWIIVDASTESIV-ETPAQPLFIGGVEQQGAL 68
+ Y + ET ++ E + ++ + S + L
Sbjct: 1683 RIRENYSAM-IFETIVDGKLKTEKIFKE----INEHSTSYTFRSEKGLLS---------- 1727
Query: 69 PPGWEERTDANGRTYYVNHIARCTQWERP---TV----HHTMSSNNSAPEEPTEQIRLRI 121
T + TQ P + + S P +
Sbjct: 1728 ------------ATQF-------TQ---PALTLMEKAAFEDLKSKGLIPADA-------T 1758
Query: 122 IAGHSL 127
AGHSL
Sbjct: 1759 FAGHSL 1764
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 7e-04
Identities = 36/229 (15%), Positives = 68/229 (29%), Gaps = 64/229 (27%)
Query: 1 ARSKVKGFLELYHAYLRLSDHETNLEVSRHRESADPDSWIIVDASTESIVETPAQPLFIG 60
+ + + + YL L N E + HR SIV+ P
Sbjct: 418 EKQPKESTISIPSIYLELKVKLEN-EYALHR----------------SIVDHYNIPK--- 457
Query: 61 GVEQQGALPPGWEERTDANGRTYYVNHIARCTQWERPTVHHTMSSNNSAPEEPTEQIRL- 119
+ +PP ++ Y+ +HI HH + + + L
Sbjct: 458 TFDSDDLIPPYLDQ--------YFYSHIG----------HHLKNIEHPERMTLFRMVFLD 499
Query: 120 -RIIAGHSLAKKDIFGARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHK 178
R + K R D N +I + L + + + +I P +
Sbjct: 500 FRFLE----QK-----IRHDSTAWNASGSILNTLQQLKFY-------KPYICDNDPKYER 543
Query: 179 LVFQVFDM-----NRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILR 222
LV + D L + ++ ++L+ E + K + R
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMA---EDEAIFEEAHKQVQR 589
Score = 27.5 bits (60), Expect = 4.0
Identities = 11/118 (9%), Positives = 33/118 (27%), Gaps = 29/118 (24%)
Query: 111 EEPTEQIRLRIIAGHSLAKKDIFGARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFI- 169
+ ++ + + ++ L N +F+
Sbjct: 56 MSKDAVSGTLRL--------------FWTLLSKQEEMVQKFV----EEVLRI--NYKFLM 95
Query: 170 --FRVKPSEHKLVFQVFD--MNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRP 223
+ + + ++ +++ +RL D+ + N+ R + LRP
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDN----QVFAKYNVSRLQPYLKLRQALLELRP 149
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich,
phosphotyrosine binding, TCR, T-cell, diacylglycerol,
phorbol ester, structural genomics; NMR {Homo sapiens}
Length = 138
Score = 37.4 bits (86), Expect = 0.001
Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 117 IRLRIIAGHSLAKKDIFGARIDLN-TVNGDQTIDSALTKT---RKKTLNPVWNEEFIFRV 172
+R+ + + + G ++ V + ++S + +K T+ P W+ F +
Sbjct: 12 LRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHI 71
Query: 173 KPSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRE 208
+ V N D + + L +L
Sbjct: 72 NKG-RVMQIIVKGKN----VDLISETTVELYSLAER 102
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 37.6 bits (86), Expect = 0.003
Identities = 21/133 (15%), Positives = 46/133 (34%), Gaps = 12/133 (9%)
Query: 78 ANGRTYYVNHIARCTQWERPTVHHTMSSNNSAPEEPTEQIRLRIIAGHSLAKKDI-FGAR 136
NG + Y+ + + + ++ I ++II+ L+ K I
Sbjct: 616 YNGCSGYL---LKPEFMRKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLSDKQISSYVE 672
Query: 137 IDLNTVNGDQTIDSALTKTRK-KTLNPVWNEEFIFRVKPSEHKLV---FQVFDMNRLTRD 192
+++ + D TK + ++P ++E+ K L V + N
Sbjct: 673 VEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN----G 728
Query: 193 DFLGMVELSLLNL 205
F+G + L +
Sbjct: 729 KFIGHRVMPLDGI 741
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 37.3 bits (85), Expect = 0.003
Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 13/134 (9%)
Query: 77 DANGRTYYVNHIARCTQWERPTVHHTMSSNNSAPEEPTEQIRLRIIAGHSLAKKDI-FGA 135
+ NGR+ Y+ + P + +R+++I+G L+ + +
Sbjct: 690 EYNGRSGYLLKPEFMRR---PDKSFDPFTEVIVDGIVANALRVKVISGQFLSDRKVGIYV 746
Query: 136 RIDLNTVNGDQTIDSALTKTRK-KTLNPVWNEE---FIFRVKPSEHKLVFQVFDMNRLTR 191
+D+ + D T T+T + + NPVW+EE F V P+ L F+
Sbjct: 747 EVDMFGLPVD-TRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG---- 801
Query: 192 DDFLGMVELSLLNL 205
F+G L + +
Sbjct: 802 GKFVGHRILPVSAI 815
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein
binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Length = 126
Score = 32.8 bits (74), Expect = 0.027
Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 141 TVNGDQTIDSALTKT---RKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDDFLGM 197
V + + + KT +K T+ P W F + + + ++ +
Sbjct: 32 AVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG-RVIQIVLMRAA----EEPVSE 86
Query: 198 VELSLLNL 205
V + + L
Sbjct: 87 VTVGVSVL 94
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 34.6 bits (78), Expect = 0.028
Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 16/135 (11%)
Query: 78 ANGRTYYVNH--IARCTQWERPTVHHTMSSNNSAPEEPTEQIRLRIIAGHSLAKKDI-FG 134
NG++ Y+ R S + + + +I+G L+++ +
Sbjct: 644 FNGQSGYLLKHEFMRRPDK-----QFNPFSVDRIDVVVATTLSITVISGQFLSERSVRTY 698
Query: 135 ARIDLNTVNGDQT-IDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLV---FQVFDMNRLT 190
++L + GD ++NPVW EE K +L V +
Sbjct: 699 VEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVME----E 754
Query: 191 RDDFLGMVELSLLNL 205
+ FLG + + L
Sbjct: 755 GNKFLGHRIIPINAL 769
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 33.1 bits (75), Expect = 0.063
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 153 TKTRKKTLNPVWNEEFIFRVK-PSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESDG 211
T+T + TLNP WN F +K + L +FD ++ + DDFLG E+ + + E +
Sbjct: 423 TRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQES 482
Query: 212 CVIHNKKYILRP 223
++ +L
Sbjct: 483 KGPMTRRLLLHE 494
>2dk7_A Transcription elongation regulator 1; structural genomics, WW
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 73
Score = 30.1 bits (67), Expect = 0.13
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 72 WEERTDANGRTYYVNHIARCTQWERPTVHHTMSSNNSAPEEPTEQ 116
W + R ++ N R + W+RP + + +EP +
Sbjct: 22 WCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKIIQEPPHK 66
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment,
WW domain, triple-standed beta-sheet, alpha-helix,
nucleus, phosphorylation; NMR {Homo sapiens}
Length = 52
Score = 26.2 bits (57), Expect = 1.8
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 68 LPPGWEER-TDANGRTYYVNHIARCTQWERPTVH 100
+ GWE+ + R YY N + WE P +
Sbjct: 11 VHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLG 44
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2,
protein structure initiative; 1.40A {Mus musculus}
Length = 189
Score = 28.3 bits (63), Expect = 1.8
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 13/64 (20%)
Query: 17 RLSDHE-TNLEVSRHRESADPDSWIIVDASTESIVETPAQ--------PLFIGGVEQQGA 67
++ + + R+ + V + E+P PL++GG
Sbjct: 92 PIALGTWVRVFLERNGRKG----ALQVGDGPRVLGESPVPHTMLNLKEPLYVGGAPDFSK 147
Query: 68 LPPG 71
L G
Sbjct: 148 LARG 151
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 3.3
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 24/46 (52%)
Query: 4 KVKGFLELYHAYLRLSDHETNLEVSRHRESADPDS--WIIVDASTE 47
K++ L+LY A DS + + A+ E
Sbjct: 24 KLQASLKLY-A---------------------DDSAPALAIKATME 47
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR
family, gene regulation; 2.20A {Streptomyces
coelicolor}
Length = 222
Score = 27.0 bits (59), Expect = 5.0
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 63 EQQGALPPGWEERTDANGRTYYVNHIAR 90
++G LPPG + +A Y +H+ R
Sbjct: 21 LREGLLPPG--RQVNATTAEYDEDHLRR 46
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D
domain swapping, heme binding, MI processing, heme,
iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Length = 79
Score = 25.4 bits (55), Expect = 5.5
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 61 GVEQQGALPPGWEERTDANGRTYYVNHIARCTQWERP 97
G LP GW +G Y++ +R W RP
Sbjct: 22 GRPPTEPLPDGWIMTFHNSGVPVYLHRESRVVTWSRP 58
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4
PDB: 1pz8_A 1pz9_A 1q56_A
Length = 204
Score = 26.4 bits (58), Expect = 6.4
Identities = 8/69 (11%), Positives = 23/69 (33%), Gaps = 13/69 (18%)
Query: 17 RLSDHE-TNLEVSRHRESADPDSWIIVDASTESIVETPAQ--------PLFIGGVEQQGA 67
++ + T+++ R + + V +P L++GG+E+
Sbjct: 105 PINTNHWTHIKAYRVQREG----SLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSV 160
Query: 68 LPPGWEERT 76
+ +
Sbjct: 161 AHKLPKAYS 169
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A*
1tmk_A*
Length = 216
Score = 26.4 bits (59), Expect = 6.6
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 8 FLE-LYHAYLRLSDHETNLEVSRHRESADPDSWIIVDASTESI 49
F E + +++L D E +S IVD + + I
Sbjct: 156 FQEKVKQTFMKLLDKEIR---------KGDESITIVDVTNKGI 189
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 25.9 bits (57), Expect = 8.5
Identities = 5/27 (18%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 176 EHKLVFQVFDMN---RLTRDDFLGMVE 199
+ K Q D+ ++R+D+ +
Sbjct: 15 KMKTRMQRVDVTGDGFISREDYELIAV 41
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,450,261
Number of extensions: 194798
Number of successful extensions: 528
Number of sequences better than 10.0: 1
Number of HSP's gapped: 477
Number of HSP's successfully gapped: 117
Length of query: 225
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 135
Effective length of database: 4,188,903
Effective search space: 565501905
Effective search space used: 565501905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)