RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8342
(225 letters)
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 50
Score = 70.2 bits (172), Expect = 5e-17
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 63 EQQGALPPGWEERTDANGRTYYVNHIARCTQWERPTVHH 101
G LPPGWEERT +GR +++NH + TQWE P + +
Sbjct: 7 NDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQN 45
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 45
Score = 68.6 bits (168), Expect = 2e-16
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 62 VEQQGALPPGWEERTDANGRTYYVNHIARCTQWERP 97
++ G LP GWE++ ++ R Y+VNH R TQWE P
Sbjct: 7 MDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDP 42
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain
{fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 33
Score = 66.5 bits (163), Expect = 7e-16
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 66 GALPPGWEERTDANGRTYYVNHIARCTQWERP 97
G LPPGWE R A G ++V+H R T +E P
Sbjct: 1 GPLPPGWEIRYTAAGERFFVDHNTRRTTFEDP 32
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 67.8 bits (165), Expect = 3e-15
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 10/118 (8%)
Query: 114 TEQIRLRIIAGHSLAKKDIFGAR---IDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIF 170
T + + ++ L K D+ G + +N + + I T +K T N V+NE F+F
Sbjct: 14 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF 73
Query: 171 RVKPSE---HKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRPRR 225
+ + F V D R +R++ +G + L H K+ PRR
Sbjct: 74 DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGG----HWKEICDFPRR 127
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 46
Score = 64.0 bits (156), Expect = 8e-15
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 62 VEQQGALPPGWEERTDANGRTYYVNHIARCTQWERP 97
+ LP GWE ++G+ Y+ NHI + T W+ P
Sbjct: 3 IPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDP 38
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 136
Score = 66.3 bits (161), Expect = 1e-14
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 1/102 (0%)
Query: 108 SAPEEPTEQIRLRIIAGHSLAKKDIFGARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEE 167
S P + + +++ L D +D +T D P WNE
Sbjct: 3 SGSSGPHGTLEVVLVSAKGLEDADFLN-NMDPYVQLTCRTQDQKSNVAEGMGTTPEWNET 61
Query: 168 FIFRVKPSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRES 209
FIF V +L ++FD + T DD +G + L + E
Sbjct: 62 FIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 103
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 34
Score = 62.4 bits (152), Expect = 3e-14
Identities = 19/32 (59%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 68 LPPGWEERTD-ANGRTYYVNHIARCTQWERPT 98
LPPGWE+R ++GR YY NHI +QWERP+
Sbjct: 2 LPPGWEKRMSRSSGRVYYFNHITNASQWERPS 33
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 64.4 bits (156), Expect = 6e-14
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 7/119 (5%)
Query: 111 EEPTEQIRLRIIAGHSLAKKDIFGARIDLNTV--NGDQTIDSALTKTRKKTLNPVWNEEF 168
+ + I L D D + T+ +KTL+P ++E F
Sbjct: 18 NFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETF 77
Query: 169 IFRVKPSE----HKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRP 223
F P L F + +R +RDD +G V + L + S+G ++ N++ I P
Sbjct: 78 TFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIEL-SEGKMLMNREIISGP 135
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis
protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 61.6 bits (149), Expect = 5e-13
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 111 EEPTEQIRLRIIAGHSLAKKDIFGAR---IDLNTVNGDQTIDSALTKTRKKTLNPVWNEE 167
++ Q+ + I+ L ++ R + + + + TKT KKTL P WN+
Sbjct: 10 DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 69
Query: 168 FIFRVKPS----EHKLVFQVFDMNRL--TRDDFLGMVELSLLNLPRE 208
FI+ E L ++D R+ +FLG + + L +
Sbjct: 70 FIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD 116
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 61.3 bits (148), Expect = 8e-13
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 111 EEPTEQIRLRIIAGHSLAKKDIFGAR---IDLNTVNGDQTIDSALTKTRKKTLNPVWNEE 167
E + + + +L D G + L + ++ TKT K +LNP WNE
Sbjct: 11 HIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNET 70
Query: 168 FIFRVKPSEH--KLVFQVFDMNRLTRDDFLGMVELSLLNLPRE 208
F F++K S+ +L +++D + +R+DF+G + + L +
Sbjct: 71 FRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA 113
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 137
Score = 60.6 bits (146), Expect = 1e-12
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 114 TEQIRLRIIAGHSLAKKDIFGAR---IDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIF 170
+ + II LA D G + L T+ +KKTLNP +NEEF +
Sbjct: 14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73
Query: 171 RVKPSE---HKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESDG 211
+K S+ L V+D + +D++G +L +
Sbjct: 74 DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKH 117
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 59.8 bits (144), Expect = 4e-12
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 113 PTEQIRLRIIAGHSLAKKDIFG---ARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFI 169
++ + I+ +L K D+ G + ++ + + + T +K TLNP +NE F
Sbjct: 23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFS 82
Query: 170 FRVKPSE---HKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRPRR 225
F V + ++V V D +++ ++D +G V + + E H + PRR
Sbjct: 83 FEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELR----HWSDMLANPRR 137
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain
{Domestic mouse (Mus musculus) [TaxId: 10090]}
Length = 37
Score = 52.1 bits (125), Expect = 2e-10
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 66 GALPPG-WEERTDANGRTYYVNHIARCTQWERP 97
GA W E A+G+TYY N+ + WE+P
Sbjct: 1 GATAVSEWTEYKTADGKTYYYNNRTLESTWEKP 33
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 145
Score = 54.8 bits (131), Expect = 2e-10
Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 9/119 (7%)
Query: 113 PTEQIRLRIIAGHSLAKKDIFGAR---IDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFI 169
+ + II +L D+ G + + ++ + + T +K TLNP +NE +
Sbjct: 18 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALV 77
Query: 170 FRVKPSEHK---LVFQVFDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRPRR 225
F V P + L V D + + ++ +G+ + H + + PR+
Sbjct: 78 FDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHG---REHWAEMLANPRK 133
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 46
Score = 51.3 bits (123), Expect = 5e-10
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 71 GWEERTDANGRTYYVNHIARCTQWERPT 98
GW+ A+G+ YY N R T W P
Sbjct: 15 GWKAAKTADGKVYYYNPTTRETSWTIPA 42
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 143
Score = 53.6 bits (128), Expect = 7e-10
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 113 PTEQIRLRIIAGHSLAKKDIFG---ARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFI 169
Q+ + II L D+ G + + + + TK +KTLNPV+NE+F
Sbjct: 32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFE--TKVHRKTLNPVFNEQFT 89
Query: 170 FRVKPSEHK---LVFQVFDMNRLTRDDFLGMVELSLLNLP 206
F+V SE LV V+D +R ++ D +G ++ + +
Sbjct: 90 FKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD 129
>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 122
Score = 51.9 bits (124), Expect = 2e-09
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 116 QIRLRIIAGHSLAKKDI-FGARIDLNTVNGDQTIDSALT-KTRKKTLNPVWNEEFIF--- 170
+ + +I+G L+++ + ++L + GD ++NPVW EE
Sbjct: 2 TLSITVISGQFLSERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEK 61
Query: 171 RVKPSEHKLVFQVFDMNRLTRDDFLGMVELSL 202
+ P L V + + FLG + +
Sbjct: 62 ILMPELASLRVAVMEEG----NKFLGHRIIPI 89
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 130
Score = 51.5 bits (122), Expect = 3e-09
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 113 PTEQIRLRIIAGHSLAKKDIFG-ARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFR 171
++Q+ +RI+ L KD G + + TK +KTLNP++NE F F
Sbjct: 16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFS 75
Query: 172 VKPSE---HKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESD 210
V +E KL F V+D +R +R D +G V L L E
Sbjct: 76 VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQP 117
>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
domain-containing protein 2, MCTP2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 51.3 bits (122), Expect = 3e-09
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 112 EPTEQIRLRIIAGHSLAKKDIFGARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFR 171
+ ++++++ L D G + D + D T T K LNP WN+ F F
Sbjct: 3 KDVGILQVKVLKAADLLAADFSG-KSD-PFCLLELGNDRLQTHTVYKNLNPEWNKVFTFP 60
Query: 172 VKPSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKK 218
+K L VFD + DFLG V + LL++ C + K
Sbjct: 61 IKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNK 107
>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 142
Score = 51.0 bits (121), Expect = 5e-09
Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 20/127 (15%)
Query: 114 TEQIRLRIIAGHSLAKKDIFG-----ARIDLNTVNGDQTIDSAL-------TKTRKKTLN 161
+ + I+ +L +D G ++ L G + TK +K+LN
Sbjct: 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 162 PVWNEEFIFRVKP----SEHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNK 217
P WN+ I++ + L V+D +R + +DFLG V + L + + +
Sbjct: 77 PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN----TPR 132
Query: 218 KYILRPR 224
Y L+ +
Sbjct: 133 WYPLKEQ 139
>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1
(PLC-D1), C-terminal domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 131
Score = 50.1 bits (119), Expect = 9e-09
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 116 QIRLRIIAGHSLAKKDIFGARIDLNTVNGDQTIDSALTKTRKKT------LNPVWNEEFI 169
++R+RII+G L K + I V + T +R+ NP W+ EF
Sbjct: 5 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 64
Query: 170 FRVK-PSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKK 218
F V P + F V D + +++DF+G + +L + + +K
Sbjct: 65 FEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKN 114
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein
HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 43.6 bits (103), Expect = 2e-07
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 72 WEERTDANGRTYYVNHIARCTQWERP 97
W E +GRTYY N + + WE+P
Sbjct: 3 WTEHKSPDGRTYYYNTETKQSTWEKP 28
>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 46.3 bits (109), Expect = 2e-07
Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 4/109 (3%)
Query: 116 QIRLRIIAGHSLAKKDIFGARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPS 175
Q+++ +I+ K + V S T+ T +P W + V P
Sbjct: 7 QLQITVISAKLKENKKNWF-GPSP-YVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPV 64
Query: 176 EHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESDGCVIHNKKYILRPR 224
F+V+ L D LG L + + ++ + L+
Sbjct: 65 SKL-HFRVWSHQTLKSDVLLGTAALDIYETLKSNNM-KLEEVVVTLQLG 111
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 29
Score = 43.6 bits (103), Expect = 3e-07
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 72 WEERTDANGRTYYVNHIARCTQWERP 97
W+E DA+GR YY N + + + WE+P
Sbjct: 4 WKEAKDASGRIYYYNTLTKKSTWEKP 29
>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 136
Score = 44.5 bits (104), Expect = 9e-07
Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 13/106 (12%)
Query: 114 TEQIRLRIIAGHSLAKKDIFGARIDLNTVNGDQTIDSAL-----------TKTRKKTLNP 162
++++I SL + R + +D + T T++KT +P
Sbjct: 5 NGLLKIKICEAVSLKPTA-WSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSP 63
Query: 163 VWNEEFIFRVKPSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRE 208
W++EF+ V K+ VF + DDF+ + L +
Sbjct: 64 AWHDEFVTDVCN-GRKIELAVFHDAPIGYDDFVANCTIQFEELLQN 108
>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 44.3 bits (104), Expect = 1e-06
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 14/104 (13%)
Query: 114 TEQIRLRIIAGHSLAK---KDIFG-----ARIDLNTVNGDQTIDSALTKTRKKTLNPVWN 165
+ + + ++ + K D+ + + T+ +NPVWN
Sbjct: 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFI----STTPDSRKRTRHFNNDINPVWN 57
Query: 166 EEFI-FRVKPSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRE 208
E F E+ L + D N + D+ LG ++ ++
Sbjct: 58 ETFEFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVG 100
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 40.2 bits (94), Expect = 5e-06
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 72 WEERTDANGRTYYVNHIARCTQWERP 97
W E + G YY + I+ +QWE+P
Sbjct: 3 WVEGITSEGYHYYYDLISGASQWEKP 28
>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 123
Score = 39.3 bits (91), Expect = 5e-05
Identities = 11/86 (12%), Positives = 24/86 (27%), Gaps = 4/86 (4%)
Query: 139 LNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDDFLGMV 198
+ T +K T+ P W F + + + + V
Sbjct: 30 VKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAAEDPMSEV--TV 86
Query: 199 ELSLLNLPRESDGCVIHNKKYILRPR 224
+S+L + + L+P+
Sbjct: 87 GVSVLAERCKKNN-GKAEFWLDLQPQ 111
>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 128
Score = 39.3 bits (91), Expect = 5e-05
Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 153 TKTR-KKTLNPVWNEEFIFRVKPSEHKLVFQVFDMNRLTRDDFLGMVELSLLNLPRESD 210
+ T + P W ++F+F + + L +V++ D +G V + L + + ++
Sbjct: 33 STTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKGL-IWDTMVGTVWIPLRTIRQSNE 90
>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens)
[TaxId: 9606]}
Length = 138
Score = 38.4 bits (88), Expect = 1e-04
Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 6/105 (5%)
Query: 114 TEQIRLRIIAGHSLAKKDIFGARIDLNTVNGDQTIDSALTKTRKKTLNPVWNEEFIFRVK 173
++ + + + + +V A T +K+ L+ W E + +
Sbjct: 25 KAELFVTRLEAVTSNHDGGCDCYV-QGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLA 83
Query: 174 PSEHK---LVFQVFDMNRLTRDDFLGMVELSL--LNLPRESDGCV 213
E L + +R +R G + L L ++P +
Sbjct: 84 EEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWG 128
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor
protein-binding family B member 1, APBB1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 35.3 bits (81), Expect = 2e-04
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 68 LPPGWEERTDANGRTYYVNHIARCTQWERP 97
LP GW D +G TYY + TQWE P
Sbjct: 3 LPAGWMRVQDTSG-TYYWHIPTGTTQWEPP 31
>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 38
Score = 30.3 bits (68), Expect = 0.014
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 70 PGWEERTDANGRTYYVNHIARCTQWE 95
WE N YY+NH + T W+
Sbjct: 13 GPWERAISPNKVPYYINHETQTTCWD 38
>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor
protein-binding family B member 3, APBB3 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 26.8 bits (59), Expect = 0.22
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 10/32 (31%)
Query: 67 ALPPGWEERTDANGRTYYVNHIARCTQWERPT 98
LPPGW + DA G TYY W P+
Sbjct: 1 GLPPGWRKIHDAAG-TYY---------WHVPS 22
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 25.6 bits (55), Expect = 4.9
Identities = 10/67 (14%), Positives = 19/67 (28%)
Query: 83 YYVNHIARCTQWERPTVHHTMSSNNSAPEEPTEQIRLRIIAGHSLAKKDIFGARIDLNTV 142
+ M + E T RL + D + + L +
Sbjct: 101 ADIGRKLDYVIHIDVRQDVLMERLTADDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNI 160
Query: 143 NGDQTID 149
NG+Q ++
Sbjct: 161 NGEQDME 167
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 843,882
Number of extensions: 37562
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 35
Length of query: 225
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,281,736
Effective search space: 183288248
Effective search space used: 183288248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)