Query psy8348
Match_columns 622
No_of_seqs 571 out of 3303
Neff 7.8
Searched_HMMs 46136
Date Sat Aug 17 01:24:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1137|consensus 100.0 1E-142 2E-147 1110.4 42.2 613 2-622 16-655 (668)
2 KOG1136|consensus 100.0 1.2E-91 2.6E-96 690.6 38.8 437 2-448 6-449 (501)
3 COG1782 Predicted metal-depend 100.0 1.7E-81 3.7E-86 648.6 38.5 435 1-444 182-636 (637)
4 TIGR03675 arCOG00543 arCOG0054 100.0 2.8E-77 6.2E-82 670.1 49.7 433 2-444 177-629 (630)
5 COG1236 YSH1 Predicted exonucl 100.0 9.5E-69 2.1E-73 579.4 43.2 425 1-444 2-427 (427)
6 KOG1135|consensus 100.0 2.7E-49 5.8E-54 422.2 41.2 439 3-447 5-606 (764)
7 TIGR00649 MG423 conserved hypo 100.0 2.9E-45 6.2E-50 399.5 36.5 388 2-445 3-418 (422)
8 KOG1138|consensus 100.0 1E-41 2.3E-46 352.0 30.1 450 12-484 11-556 (653)
9 PF11718 CPSF73-100_C: Pre-mRN 100.0 4.8E-41 1E-45 330.0 17.2 158 465-622 1-203 (216)
10 COG0595 mRNA degradation ribon 100.0 3E-38 6.6E-43 345.6 33.0 393 2-446 11-429 (555)
11 PF10996 Beta-Casp: Beta-Casp 99.9 6.4E-22 1.4E-26 179.7 10.8 122 234-355 1-126 (126)
12 KOG1361|consensus 99.8 2.4E-18 5.1E-23 183.2 18.4 296 50-410 111-413 (481)
13 PRK11244 phnP carbon-phosphoru 99.8 5.3E-18 1.1E-22 172.5 16.4 155 12-198 36-191 (250)
14 TIGR02651 RNase_Z ribonuclease 99.8 4.2E-18 9.2E-23 177.7 15.5 173 1-198 1-234 (299)
15 TIGR02649 true_RNase_BN ribonu 99.8 6.2E-18 1.4E-22 176.8 13.9 172 2-198 1-236 (303)
16 TIGR03307 PhnP phosphonate met 99.7 4.1E-17 8.9E-22 164.7 16.9 158 10-198 24-181 (238)
17 PRK00055 ribonuclease Z; Revie 99.7 4.4E-16 9.6E-21 159.7 12.0 180 2-198 4-200 (270)
18 PRK02113 putative hydrolase; P 99.7 1.5E-15 3.2E-20 154.7 15.3 158 12-195 34-193 (252)
19 PRK05184 pyrroloquinoline quin 99.6 5.6E-15 1.2E-19 154.1 14.4 165 9-195 35-222 (302)
20 TIGR02108 PQQ_syn_pqqB coenzym 99.6 7.1E-15 1.5E-19 152.9 14.7 163 10-195 35-222 (302)
21 smart00849 Lactamase_B Metallo 99.6 2.5E-15 5.5E-20 143.9 10.6 146 9-173 2-148 (183)
22 PRK02126 ribonuclease Z; Provi 99.6 3.8E-14 8.1E-19 149.4 18.0 177 11-198 14-280 (334)
23 PF12706 Lactamase_B_2: Beta-l 99.6 4.5E-15 9.9E-20 144.3 9.6 154 23-198 1-160 (194)
24 COG1234 ElaC Metal-dependent h 99.6 1.8E-15 3.9E-20 156.6 5.5 185 2-199 4-225 (292)
25 PRK00685 metal-dependent hydro 99.5 1.7E-13 3.8E-18 137.2 18.1 147 12-193 7-165 (228)
26 PRK11921 metallo-beta-lactamas 99.5 3E-13 6.5E-18 146.5 14.8 130 11-168 31-163 (394)
27 PF00753 Lactamase_B: Metallo- 99.4 2.1E-13 4.6E-18 130.5 8.1 150 9-173 2-151 (194)
28 TIGR02650 RNase_Z_T_toga ribon 99.4 2.8E-12 6.1E-17 129.6 16.3 210 20-260 16-273 (277)
29 PRK04286 hypothetical protein; 99.4 3.4E-12 7.3E-17 133.0 16.8 183 2-193 3-210 (298)
30 PRK11709 putative L-ascorbate 99.3 7.5E-11 1.6E-15 125.1 17.3 158 11-193 43-250 (355)
31 PRK05452 anaerobic nitric oxid 99.3 8.1E-12 1.8E-16 138.1 9.1 130 12-168 34-167 (479)
32 COG2333 ComEC Predicted hydrol 99.3 7E-11 1.5E-15 121.2 14.8 192 13-243 54-258 (293)
33 TIGR03413 GSH_gloB hydroxyacyl 99.2 1.5E-11 3.3E-16 124.9 8.8 117 14-170 11-129 (248)
34 PF07521 RMMBL: RNA-metabolisi 99.2 1.1E-11 2.4E-16 90.0 4.5 42 369-410 2-43 (43)
35 COG0426 FpaA Uncharacterized f 99.2 4.6E-10 9.9E-15 118.0 15.4 133 9-169 32-167 (388)
36 PRK11539 ComEC family competen 99.2 2.4E-10 5.3E-15 133.3 14.9 161 13-214 511-680 (755)
37 TIGR00361 ComEC_Rec2 DNA inter 99.2 2E-10 4.3E-15 132.4 13.9 147 13-191 450-605 (662)
38 KOG2121|consensus 99.2 2.1E-11 4.6E-16 134.2 5.1 184 2-200 445-655 (746)
39 PLN02469 hydroxyacylglutathion 99.2 8E-11 1.7E-15 120.0 8.7 129 2-170 3-138 (258)
40 PLN02398 hydroxyacylglutathion 99.1 3.1E-10 6.6E-15 118.8 9.6 119 14-170 88-209 (329)
41 COG0491 GloB Zn-dependent hydr 99.1 3.3E-10 7.2E-15 113.8 9.4 147 11-172 23-172 (252)
42 PLN02962 hydroxyacylglutathion 99.1 3E-10 6.5E-15 115.1 8.7 125 11-171 21-154 (251)
43 PRK10241 hydroxyacylglutathion 99.1 3E-10 6.5E-15 115.5 7.6 116 14-170 13-130 (251)
44 PF13483 Lactamase_B_3: Beta-l 99.0 1.6E-09 3.6E-14 102.7 11.2 126 11-194 5-137 (163)
45 KOG0813|consensus 98.8 6.1E-09 1.3E-13 104.2 7.8 127 12-170 12-142 (265)
46 COG2220 Predicted Zn-dependent 98.8 9.5E-08 2.1E-12 97.7 16.1 156 11-194 12-182 (258)
47 COG1237 Metal-dependent hydrol 98.8 3.8E-09 8.3E-14 104.5 4.2 74 14-89 23-96 (259)
48 COG2248 Predicted hydrolase (m 98.7 1.9E-07 4.1E-12 91.3 13.7 226 2-244 3-264 (304)
49 COG1235 PhnP Metal-dependent h 98.6 5.3E-08 1.1E-12 100.2 7.3 171 50-234 61-240 (269)
50 PF02112 PDEase_II: cAMP phosp 98.6 3.3E-07 7.2E-12 95.9 11.3 192 2-199 3-256 (335)
51 KOG0814|consensus 97.5 0.00017 3.6E-09 67.1 5.5 117 14-168 22-141 (237)
52 PF07522 DRMBL: DNA repair met 97.1 0.003 6.4E-08 55.8 9.0 93 308-406 12-106 (110)
53 COG5212 PDE1 Low-affinity cAMP 97.0 0.0016 3.4E-08 65.0 7.0 110 50-170 111-234 (356)
54 PF14597 Lactamase_B_5: Metall 96.6 0.0011 2.3E-08 62.6 2.3 120 10-170 20-139 (199)
55 PF13691 Lactamase_B_4: tRNase 96.1 0.0055 1.2E-07 48.1 3.2 49 14-67 13-63 (63)
56 KOG3798|consensus 95.8 0.04 8.6E-07 54.6 8.3 156 12-194 87-264 (343)
57 KOG4736|consensus 95.0 0.05 1.1E-06 55.3 6.2 116 14-171 96-214 (302)
58 COG2015 Alkyl sulfatase and re 92.1 0.04 8.6E-07 59.3 -0.3 73 13-86 126-202 (655)
59 KOG1137|consensus 89.7 1.6 3.5E-05 48.1 9.1 94 2-97 153-258 (668)
60 KOG3592|consensus 84.4 0.6 1.3E-05 52.7 2.3 54 15-74 50-104 (934)
61 PRK00685 metal-dependent hydro 78.5 4.3 9.3E-05 40.1 5.9 56 382-444 168-228 (228)
62 PRK00055 ribonuclease Z; Revie 76.1 5.9 0.00013 40.2 6.2 60 381-447 207-269 (270)
63 PRK11188 rrmJ 23S rRNA methylt 60.0 19 0.0004 35.5 5.7 85 162-246 94-183 (209)
64 PF12706 Lactamase_B_2: Beta-l 56.3 11 0.00024 35.9 3.3 25 382-406 169-193 (194)
65 PF13483 Lactamase_B_3: Beta-l 55.8 15 0.00033 34.2 4.2 31 376-406 131-163 (163)
66 PRK11244 phnP carbon-phosphoru 43.2 35 0.00076 34.3 4.7 55 382-444 196-250 (250)
67 TIGR02649 true_RNase_BN ribonu 42.8 44 0.00095 34.8 5.5 55 382-443 244-302 (303)
68 PF02670 DXP_reductoisom: 1-de 40.1 69 0.0015 29.1 5.6 39 379-419 28-66 (129)
69 cd00559 Cyanase_C Cyanase C-te 38.5 47 0.001 26.4 3.6 32 568-599 20-62 (69)
70 TIGR00438 rrmJ cell division p 37.6 84 0.0018 30.0 6.2 62 183-244 96-162 (188)
71 TIGR03307 PhnP phosphonate met 36.3 41 0.0009 33.5 4.0 53 382-442 186-238 (238)
72 TIGR02651 RNase_Z ribonuclease 34.6 75 0.0016 32.7 5.7 56 382-444 242-299 (299)
73 COG0293 FtsJ 23S rRNA methylas 31.9 1.2E+02 0.0025 29.9 6.1 86 161-246 87-177 (205)
74 PRK02113 putative hydrolase; P 30.1 88 0.0019 31.3 5.2 55 382-444 198-252 (252)
75 PF02560 Cyanate_lyase: Cyanat 29.2 46 0.001 26.8 2.2 33 568-600 24-67 (73)
76 COG1235 PhnP Metal-dependent h 26.2 54 0.0012 33.5 2.9 33 379-411 207-239 (269)
77 TIGR00537 hemK_rel_arch HemK-r 25.3 2.1E+02 0.0045 26.9 6.6 36 208-243 120-155 (179)
78 PRK02866 cyanate hydratase; Va 21.7 1.1E+02 0.0023 28.5 3.6 31 569-599 99-140 (147)
79 KOG2862|consensus 20.7 1.8E+02 0.0039 30.6 5.2 37 374-410 116-154 (385)
80 PF06288 DUF1040: Protein of u 20.5 82 0.0018 26.1 2.2 20 232-251 4-23 (86)
81 TIGR00673 cynS cyanate hydrata 20.2 1.2E+02 0.0025 28.4 3.5 31 569-599 102-143 (150)
No 1
>KOG1137|consensus
Probab=100.00 E-value=1.1e-142 Score=1110.38 Aligned_cols=613 Identities=57% Similarity=0.939 Sum_probs=590.3
Q ss_pred cEecCCCCCCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeE
Q psy8348 2 KTLKGAGQEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRC 81 (622)
Q Consensus 2 v~~LG~g~evG~sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~I 81 (622)
++|||+|+||||||++++++|++||+|||.||++++..++|+++.++++.||.++|||+|+||+++|||+++++.|.+++
T Consensus 16 ~~pLGag~EVGRSC~ile~kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf~grv 95 (668)
T KOG1137|consen 16 FTPLGAGNEVGRSCHILEYKGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSFIGRV 95 (668)
T ss_pred EEECCCCcccCceEEEEEecCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeecccccee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EechhhHHHHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEEeCCCCCCcEEEEEEECCEE
Q psy8348 82 FMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVK 161 (622)
Q Consensus 82 y~t~~t~~i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~~aGH~~Gs~~~~I~~~~~~ 161 (622)
|||++|+++++|++.||+++.+.+.+..+|++.|+.++++++++++|+++.+++|++|++|.+||++|+|||++++.+.+
T Consensus 96 fmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p~~aGhVlgacMf~veiagv~ 175 (668)
T KOG1137|consen 96 FMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNGIKFWPYHAGHVLGACMFMVEIAGVR 175 (668)
T ss_pred EEecchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccCCeEEEeeccchhhhheeeeeeeceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCccccccccCCCCCCCcEEEEcccCCCCCCchhhhHHHHHHHHHHHHHHcCCeEEEeecccchHHHHHHHH
Q psy8348 162 ILYTGDFSRQEDRHLMAAEIPPVKPDILITESTYGTHVHEQREEREGRFTSLIHDIVNRGGRCLIPVFALGRAQELLLIL 241 (622)
Q Consensus 162 IlytGD~~~~~~~~l~~a~~~~~~~DvLI~EsTyg~~~~~~~~~~~~~~~~~i~~~l~~gg~vliP~falGR~qEll~iL 241 (622)
++|||||+++.|+|+..++.|+.++|++|+|||||...|.+|.+|+.+|.+.|+.++.+|||||+|+||+||+|||+++|
T Consensus 176 lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r~~re~rlt~vIh~~v~rGGR~L~PvFAlgrAqELllil 255 (668)
T KOG1137|consen 176 LLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGRLTWVIHSTVPRGGRVLIPVFALGRAQELLLIL 255 (668)
T ss_pred EEeccccchhhcccccchhCCCCCccEEEEEeeeeEEecCchHHhhhhhhhhHHhhccCCCceEeeeeecchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCccEEEECchHHHHHHHHHHhHHhhhHHHHHHHhcCCCcccccccccccccccccCCCeEEEecCCCCC
Q psy8348 242 DEYWSLHPELHDIPIYYASSLAKKCMSVYQTYINAMNDRIRRQISINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQ 321 (622)
Q Consensus 242 ~~~~~~~~~l~~ipI~~~s~~a~~~~~~y~~~~~~~~~~i~~~~~~~npf~f~~i~~l~~~~~~~~~~p~Vvias~gml~ 321 (622)
++||.+|++++++||||+|++|++||++||+|++.||++|++++..+|||.|+|++++++.+.|+|.||||++|||||+|
T Consensus 256 deyw~~h~~l~~iPiyyaSslakkcm~vfQtyv~~mnd~Irk~~~~~Npfifk~vs~L~~~D~f~D~gP~vv~aspgmlq 335 (668)
T KOG1137|consen 256 DEYWGNHVDLRDIPIYYASSLAKKCMGVFQTYVNMMNDRIRKQSALRNPFIFKHVSILRTGDWFDDEGPSVVMASPGMLQ 335 (668)
T ss_pred HHHhhcchhhhcCceeehhhHHHhhhhhHheehhhhhhhhHHhhccCCceEeeccccccccccccccCCceeEeCchHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHcCCCCCeEEEeccCCCCCcccccccCCceeeeccCeEeeceeeEEEEecccCCCHHHHHHHHHHhCCCe
Q psy8348 322 SGLSRELFEMWCTDAKNGVIIAGYCVEGTLAKTILSEPEEVIGMSGQRLPLKMSVDYISFSAHTDYQQTSEFVRELRPAH 401 (622)
Q Consensus 322 ~G~s~~~l~~~~~d~~n~vil~gy~~~gt~~~~l~~~~~~~~~~~g~~i~~~~~v~~i~fS~Had~~el~~~i~~l~P~~ 401 (622)
+|.||++|++||+|++|+|+++|||++||+|+.++++|+++..++|+++|++|+|++++||+|.||.|..+|++.++|+|
T Consensus 336 sglSRelfe~wcsD~kN~vlipGy~Vegtlak~il~eP~eI~a~~G~klp~~m~V~~isFaAhvdy~q~s~fi~~i~~~~ 415 (668)
T KOG1137|consen 336 SGLSRELFERWCSDSKNAVLIPGYCVEGTLAKDILSEPKEIMAMNGRKLPLRMQVEYISFAAHVDYLQNSEFIADITPPH 415 (668)
T ss_pred hhhhHHHHHHhCCCCCCcEEeccceechhHHHHHhcCchhhhcccCCcccccceEEEEEeeechhhhhhHHHHHHhCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCChHHHHHHHHHHHHhhcCCCCCceEEeeCCCCcEEEEeecceehhhhhcccccccCCCCceEEEEEEeeCCeeE
Q psy8348 402 VVLVHGEQNEMSRLKAALTREYEDDPNTSMELYNPRNTVSVDLYFKGEKTAKVMGELAVENLKPDAALSGIIVKRNFNYH 481 (622)
Q Consensus 402 VilvHGe~~~~~~l~~~l~~~~~~~~~~~~~v~~p~ng~~v~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~l~~~~~~~~ 481 (622)
+|+||||.++|.+||++|..+|...+ .++++++|+||+.++++|++++.||++|++|. .|++ .+++|+|+++|++|.
T Consensus 416 lilVHGE~neM~rLKs~L~~~f~d~k-v~i~v~tprn~e~v~l~f~~eklak~~G~~a~-~p~~-~~~sgiLv~~~~~~~ 492 (668)
T KOG1137|consen 416 LILVHGEANEMMRLKSALEAAFRDGK-VPIDVSTPRNCEDVELYFPGEKLAKTTGSLAE-VPKE-DRVSGILVSYGFSYA 492 (668)
T ss_pred EEEEecccchhHHHHHHHHHHhccCC-CcceecCCccceEeeeecCcchhhhhhhcccc-CCcc-ceEEEEEEecCCcee
Confidence 99999999999999999999997654 57899999999999999999999999999998 6665 899999999999999
Q ss_pred EeCCCCCCcccCcceeEEEEEEEEEeeccHHHHHHHHHhccCCeeeecc-ceEEEeeeEEEEEeCc-EEEEEEeecCCch
Q psy8348 482 LLAPSDLPKYTDLKASKIIQQQSVYYSGSISVLRSLISHLAGPVETLDE-KRLRAFACIEITLEKC-IVVLEWASNPISD 559 (622)
Q Consensus 482 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~w~~~~~~d 559 (622)
|++|+||..|++|+++.++|||.+||.+++.++.|+|.|++..+.+.++ ..++|++.++|...+. .+.+||.++++||
T Consensus 493 ils~edL~~ys~l~~~~~~erq~i~~~~~~~li~~~l~~~~~e~~e~s~~~a~~v~~vi~v~~~q~~~ivlEw~~~~~~D 572 (668)
T KOG1137|consen 493 ILSPEDLILYSDLKTIPLNERQVIPYMGRIALIGPNLIQGKNEMLETSKKHAYRVELVIKVVKPQEFPIVLEWLSNPEND 572 (668)
T ss_pred eccHHHhhhhhhheeeeccceEEEeccccHHhhhhHHHhcchhhhhcccCcceEEEeEEEEeccCCceEEEEeccCchhh
Confidence 9999999999999999999999999999999999999999776655555 5899999999999875 8999999999999
Q ss_pred hHhhHHH-------------------------HHHHHHHHHHHhCCCccccCCCCceEEEEECCeEEEEEcCCceEEeCC
Q psy8348 560 MYADSLI-------------------------SECLIEILVEMYGEAAVPKMFKGEKITITVDKKKACIDLVDLSVQCED 614 (622)
Q Consensus 560 ~~ad~~~-------------------------~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 614 (622)
|+|||+. .++|..+|+.||||+++. +...+..++|+..|.|+.++. ++- |
T Consensus 573 ~~adSi~~~il~v~~~pks~kl~~~k~~~~~~~k~l~~~l~~~fg~~~~~---e~~~~~~~~~~~~~~~~~~s~-~~~-~ 647 (668)
T KOG1137|consen 573 MLADSIGARILTVSLSPKSVKLMVDKCDEVERKKLLESLLKNQFGDDKTN---EYGILVMEVDGMVARISGSSV-MKI-D 647 (668)
T ss_pred hhHhhhhheeeecccCCcceEeeecccchHHHHHHHHHHHHHHhchhhhc---ccceeEEEecCcEEEecCccc-ccc-C
Confidence 9999999 467999999999999876 445778889999999999876 333 8
Q ss_pred hhhhcccC
Q psy8348 615 SKLKSTVQ 622 (622)
Q Consensus 615 ~~~~~~v~ 622 (622)
+.|++||+
T Consensus 648 ~~~~~~v~ 655 (668)
T KOG1137|consen 648 EGLKERVE 655 (668)
T ss_pred ccHHHHHH
Confidence 89998874
No 2
>KOG1136|consensus
Probab=100.00 E-value=1.2e-91 Score=690.62 Aligned_cols=437 Identities=41% Similarity=0.762 Sum_probs=409.6
Q ss_pred cEecCCCCCCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCCCCCCC-----CCccEEEcCCCchhhhcchHHHHHhcC
Q psy8348 2 KTLKGAGQEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVES-----DQIDLLLISHFHLDHCGALPWFLLKTG 76 (622)
Q Consensus 2 v~~LG~g~evG~sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~~~~-----~~Id~IlITH~H~DHiggLp~l~~~~~ 76 (622)
++|||+|+++|+||+++..+|++||+|||+|.|+...+..|.+.++.. +-||.|+|||+|+||||+|||+.+-.|
T Consensus 6 v~pLGAGQdvGrSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~G 85 (501)
T KOG1136|consen 6 VTPLGAGQDVGRSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVG 85 (501)
T ss_pred EEeccCCcccCceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhhC
Confidence 789999999999999999999999999999999998889999888743 469999999999999999999999999
Q ss_pred CCCeEEechhhHHHHHHHHHhHHhhhcc-cccccCCCHHHHHHhhcccEEecCCCeEEeC-CEEEEEEeCCCCCCcEEEE
Q psy8348 77 FKGRCFMTHATKAIYRWLLSDYIKVSNI-STEQMLYTESDLEKSMDKIETINFHEEKDVN-GIKFSAYNAGHVLGAAMFL 154 (622)
Q Consensus 77 ~~~~Iy~t~~t~~i~~~~l~d~~~~~~~-~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~-gi~v~~~~aGH~~Gs~~~~ 154 (622)
+++|||||.||+++.+.+++||.++.-. .++..+|+.+++.+|+.++..+..+|++.++ ++.+++|.|||++|++||.
T Consensus 86 Y~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYAGHVLGAaMf~ 165 (501)
T KOG1136|consen 86 YDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYAGHVLGAAMFY 165 (501)
T ss_pred CCCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeeeecccccceeEEE
Confidence 9999999999999999999999988654 5667799999999999999999999999994 7999999999999999999
Q ss_pred EEECCEEEEEEcCCCCCccccccccCCCCCCCcEEEEcccCCCCCCchhhhHHHHHHHHHHHHHHcCCeEEEeecccchH
Q psy8348 155 IEIAGVKILYTGDFSRQEDRHLMAAEIPPVKPDILITESTYGTHVHEQREEREGRFTSLIHDIVNRGGRCLIPVFALGRA 234 (622)
Q Consensus 155 I~~~~~~IlytGD~~~~~~~~l~~a~~~~~~~DvLI~EsTyg~~~~~~~~~~~~~~~~~i~~~l~~gg~vliP~falGR~ 234 (622)
+..++..++||||++..+|+|+.+|++...+||+||+||||++....++..||.+|.+.+++++.+||++|||+||+||+
T Consensus 166 ikvGd~svvYTGDYnmTpDrHLGaA~id~~rpdlLIsESTYattiRdskr~rERdFLk~VhecVa~GGkvlIPvFALGRA 245 (501)
T KOG1136|consen 166 IKVGDQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECVARGGKVLIPVFALGRA 245 (501)
T ss_pred EEecceeEEEecCccCCcccccchhhhccccCceEEeeccceeeeccccchhHHHHHHHHHHHHhcCCeEEEEeeecchH
Confidence 99999999999999999999999999998999999999999999999988999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCccEEEECchHHHHHHHHHHhHHhhhHHHHHHHhcCCCcccccccccccccccccCCCeEEE
Q psy8348 235 QELLLILDEYWSLHPELHDIPIYYASSLAKKCMSVYQTYINAMNDRIRRQISINNPFVFKHISNLKGIDHFEDIGPCVVM 314 (622)
Q Consensus 235 qEll~iL~~~~~~~~~l~~ipI~~~s~~a~~~~~~y~~~~~~~~~~i~~~~~~~npf~f~~i~~l~~~~~~~~~~p~Vvi 314 (622)
||+..+|+.||++.. -++|||+.+.++.++..+|+-++.|.|+.+++++..+|+|+|+|++.... ...+.+||+|+|
T Consensus 246 QElCiLLd~YWERm~--lk~Piyfs~Glte~an~yyk~fiswtn~~v~k~~~~rNmfdfkhiKpfd~-~~~~~pGp~VlF 322 (501)
T KOG1136|consen 246 QELCILLDDYWERMN--LKVPIYFSSGLTEKANMYYKMFISWTNENVKKKFVERNMFDFKHIKPFDR-SYIEAPGPMVLF 322 (501)
T ss_pred HHHHHHHHHHHHhhc--cCCCccccccccchhchHhhhhhhhcccchhhhhccCCccccccCChhhh-hhhcCCCCEEEE
Confidence 999999999999753 37899999999999999999999999999999998999999999987653 223468999999
Q ss_pred ecCCCCCcchHHHHHHHHcCCCCCeEEEeccCCCCCcccccccCCceeeeccCeEeeceeeEEEEecccCCCHHHHHHHH
Q psy8348 315 ASPGMMQSGLSRELFEMWCTDAKNGVIIAGYCVEGTLAKTILSEPEEVIGMSGQRLPLKMSVDYISFSAHTDYQQTSEFV 394 (622)
Q Consensus 315 as~gml~~G~s~~~l~~~~~d~~n~vil~gy~~~gt~~~~l~~~~~~~~~~~g~~i~~~~~v~~i~fS~Had~~el~~~i 394 (622)
||||||.+|.|.+.|++||+||.|.||++|||+.||.|.+++++++.+ .+.|+...+|+.|++.+||+|+|..++.+++
T Consensus 323 atPGMLhaG~SLkvFK~W~~~~~NlvimPGYcV~GTvG~kvl~G~~kv-ei~~~~~eirl~V~~maFSaHaDAkGIm~li 401 (501)
T KOG1136|consen 323 ATPGMLHAGFSLKVFKKWCPDPLNLVIMPGYCVAGTVGHKVLNGATKV-EIYGTKVEIRLKVEYMAFSAHADAKGIMQLI 401 (501)
T ss_pred cCCcccccccchHHHHhhCCCccceEeecCceeccchhhhhhCCccEE-EEeeeEEEEEEEEEEeeeccccCchhHHHHH
Confidence 999999999999999999999999999999999999999999997754 4569999999999999999999999999999
Q ss_pred HHhCCCeEEEEcCChHHHHHHHHHHHHhhcCCCCCceEEeeCCCCcEEEEeecc
Q psy8348 395 RELRPAHVVLVHGEQNEMSRLKAALTREYEDDPNTSMELYNPRNTVSVDLYFKG 448 (622)
Q Consensus 395 ~~l~P~~VilvHGe~~~~~~l~~~l~~~~~~~~~~~~~v~~p~ng~~v~l~~~~ 448 (622)
+++.|++|++||||...|.-|++++.++|+ +.+|+|.||+++.+..+.
T Consensus 402 ~~csPknVmlVHGE~~kM~~Lk~ki~~e~~------ip~~mPaNGetv~i~s~~ 449 (501)
T KOG1136|consen 402 KQCSPKNVMLVHGEKSKMKFLKEKIESEFD------IPTFMPANGETVVISSTT 449 (501)
T ss_pred HhcCcceEEEEeccchhhHHHHHhhHhhcC------CceeeCCCCCEEEecccc
Confidence 999999999999999999999999999985 568999999999998653
No 3
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=100.00 E-value=1.7e-81 Score=648.56 Aligned_cols=435 Identities=34% Similarity=0.631 Sum_probs=390.5
Q ss_pred CcEecCCCCCCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCCCC--CCCCCccEEEcCCCchhhhcchHHHHHhcCCC
Q psy8348 1 MKTLKGAGQEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDL--VESDQIDLLLISHFHLDHCGALPWFLLKTGFK 78 (622)
Q Consensus 1 ~v~~LG~g~evG~sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~--~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~ 78 (622)
+|++|||..||||||+++++.+.++|+|||++++..+.++.|+++. +....+|||+|||+|+||||-||+|+ +.|++
T Consensus 182 Rvt~LGg~~EVGRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~Lf-kYgy~ 260 (637)
T COG1782 182 RVTALGGFREVGRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLF-KYGYD 260 (637)
T ss_pred EEEeeccchhccceeEEEecCCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhh-hcCCC
Confidence 4799999999999999999999999999999988776778887764 34557999999999999999999975 56899
Q ss_pred CeEEechhhHHHHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEe-CCEEEEEEeCCCCCCcEEEEEEE
Q psy8348 79 GRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDV-NGIKFSAYNAGHVLGAAMFLIEI 157 (622)
Q Consensus 79 ~~Iy~t~~t~~i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i-~gi~v~~~~aGH~~Gs~~~~I~~ 157 (622)
+|||||+||..++-.++.||+.+....+..++|+..++++++....+++|++..++ .++++|+++|||.+||++..+.+
T Consensus 261 GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NAGHILGSA~~HlHI 340 (637)
T COG1782 261 GPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHI 340 (637)
T ss_pred CCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecccchhcceeeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999 68999999999999999987777
Q ss_pred CC--EEEEEEcCCCCCccccccccCCCCCCCcEEEEcccCC--CCCCchhhhHHHHHHHHHHHHHHcCCeEEEeecccch
Q psy8348 158 AG--VKILYTGDFSRQEDRHLMAAEIPPVKPDILITESTYG--THVHEQREEREGRFTSLIHDIVNRGGRCLIPVFALGR 233 (622)
Q Consensus 158 ~~--~~IlytGD~~~~~~~~l~~a~~~~~~~DvLI~EsTyg--~~~~~~~~~~~~~~~~~i~~~l~~gg~vliP~falGR 233 (622)
++ .+++|||||.+...+.+.+|.....+++.||+||||| ++.+++|++.|++|.+.|++++++||+||||+||+||
T Consensus 341 GdGlyNi~yTGDfk~~~trLl~~A~n~FpRvEtlimEsTYGg~~d~q~~R~eaE~~L~~vi~~t~~rGGKvLIP~fAVGR 420 (637)
T COG1782 341 GDGLYNIVYTGDFKFEKTRLLEPANNKFPRVETLIMESTYGGRDDVQPPREEAEKELIKVINDTLKRGGKVLIPVFAVGR 420 (637)
T ss_pred cCCceeEEEecccccceeeecChhhccCcchhheeeeeccCCccccCccHHHHHHHHHHHHHHHHhcCCeEEEEeeeccc
Confidence 54 7999999999999999998877777999999999999 6678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCccEEEECchHHHHHHHHHHhHHhhhHHHHHHH--hcCCCcc---cccccccccc-ccccc
Q psy8348 234 AQELLLILDEYWSLHPELHDIPIYYASSLAKKCMSVYQTYINAMNDRIRRQI--SINNPFV---FKHISNLKGI-DHFED 307 (622)
Q Consensus 234 ~qEll~iL~~~~~~~~~l~~ipI~~~s~~a~~~~~~y~~~~~~~~~~i~~~~--~~~npf~---f~~i~~l~~~-~~~~~ 307 (622)
+||+|..|++++.+ +.++.+|||+++ |..++++++.+|.+++|..++..+ ...|||. |+++..-... +...+
T Consensus 421 ~QEvM~VLee~mr~-g~ipe~PVYlDG-MI~EatAIhtaYPEyL~~~lr~~I~~~g~NPF~se~f~~V~~~~~r~~i~~~ 498 (637)
T COG1782 421 SQEVMIVLEEAMRK-GLIPEVPVYLDG-MIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEIFKRVEGSDERQEIIES 498 (637)
T ss_pred cceehhHHHHHHhc-CCCCCCceeeee-eeeehhhhhhcCHHhhhHHHHHHHhcCCCCCccccceeecCChhHHHHHhcC
Confidence 99999999999865 567889999996 677889999999999999999887 3589996 4444432211 12345
Q ss_pred CCCeEEEecCCCCCcchHHHHHHHHcCCCCCeEEEeccCCCCCcccccccCCceeee--ccCe--EeeceeeEEEE-ecc
Q psy8348 308 IGPCVVMASPGMMQSGLSRELFEMWCTDAKNGVIIAGYCVEGTLAKTILSEPEEVIG--MSGQ--RLPLKMSVDYI-SFS 382 (622)
Q Consensus 308 ~~p~Vvias~gml~~G~s~~~l~~~~~d~~n~vil~gy~~~gt~~~~l~~~~~~~~~--~~g~--~i~~~~~v~~i-~fS 382 (622)
..||||+||+|||.+|++.++|+.||+||+|+++|+|||++||+||++.++.+++.. ..|. .++++|.|+.+ .||
T Consensus 499 ~ep~iIlaTSGMlnGGPvveyfk~lA~DprntliFVgYQAeGTLGRriq~G~kEipi~~~~G~te~i~inMeV~tieGFS 578 (637)
T COG1782 499 DEPAIILATSGMLNGGPVVEYFKHLAPDPKNTLIFVGYQAEGTLGRRIQSGAKEIPIPGEDGKTEVIKVNMEVETIEGFS 578 (637)
T ss_pred CCCeEEEeccccccCCcHHHHHHHhCCCCCceEEEEEeccCcchhhhhhcCceecccccCCCCeEEEEEEEEEEEecCcC
Confidence 799999999999999999999999999999999999999999999999999888763 3343 58899999999 799
Q ss_pred cCCCHHHHHHHHHHhC--CCeEEEEcCChHHHHHHHHHHHHhhcCCCCCceEEeeCCCCcEEEE
Q psy8348 383 AHTDYQQTSEFVRELR--PAHVVLVHGEQNEMSRLKAALTREYEDDPNTSMELYNPRNTVSVDL 444 (622)
Q Consensus 383 ~Had~~el~~~i~~l~--P~~VilvHGe~~~~~~l~~~l~~~~~~~~~~~~~v~~p~ng~~v~l 444 (622)
+|+|..||.+|++.++ |++|+++|||+.++..|++.+...|. +..+.|+|.|++++
T Consensus 579 GHsdrrqL~~yvr~~~PkP~ki~~~HGe~sk~~~lA~si~~~~~------i~t~ap~nLetiR~ 636 (637)
T COG1782 579 GHSDRRQLMKYVRRMNPKPEKILLNHGEPSKCLDLASSIRRKFK------IETYAPKNLETIRL 636 (637)
T ss_pred CCccHHHHHHHHHhcCCCCceeEeecCChHHHHHHHHHHHhhcc------eeeeccccccceec
Confidence 9999999999999995 67999999999999999999988874 57899999999986
No 4
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=100.00 E-value=2.8e-77 Score=670.12 Aligned_cols=433 Identities=32% Similarity=0.614 Sum_probs=382.1
Q ss_pred cEecCCCCCCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCCCC--CCCCCccEEEcCCCchhhhcchHHHHHhcCCCC
Q psy8348 2 KTLKGAGQEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDL--VESDQIDLLLISHFHLDHCGALPWFLLKTGFKG 79 (622)
Q Consensus 2 v~~LG~g~evG~sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~--~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~ 79 (622)
|++|||++|+|+||++|+.++.+||||||++++.......|++.. +++.+||+|||||+|.||+|++|++.. .++++
T Consensus 177 i~~LGg~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k-~g~~g 255 (630)
T TIGR03675 177 VTALGGFREVGRSALLLSTPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFK-YGYDG 255 (630)
T ss_pred EEEEecCCccCCCEEEEEECCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHH-hCCCC
Confidence 789999999999999999999999999999876433334554432 346789999999999999999999865 46889
Q ss_pred eEEechhhHHHHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEe-CCEEEEEEeCCCCCCcEEEEEEEC
Q psy8348 80 RCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDV-NGIKFSAYNAGHVLGAAMFLIEIA 158 (622)
Q Consensus 80 ~Iy~t~~t~~i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i-~gi~v~~~~aGH~~Gs~~~~I~~~ 158 (622)
+||+|.+|+++++.++.|+.++.......++|+.+++..++.++.+++|++++++ +|++++++++||++||+++.+++.
T Consensus 256 pIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~AGHilGsa~~~~~i~ 335 (630)
T TIGR03675 256 PVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNAGHILGSAIAHLHIG 335 (630)
T ss_pred ceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecCccccCceEEEEEEC
Confidence 9999999999999999998887655556688999999999999999999999999 589999999999999999998874
Q ss_pred C--EEEEEEcCCCCCccccccccCCCCCCCcEEEEcccCCCCC--CchhhhHHHHHHHHHHHHHHcCCeEEEeecccchH
Q psy8348 159 G--VKILYTGDFSRQEDRHLMAAEIPPVKPDILITESTYGTHV--HEQREEREGRFTSLIHDIVNRGGRCLIPVFALGRA 234 (622)
Q Consensus 159 ~--~~IlytGD~~~~~~~~l~~a~~~~~~~DvLI~EsTyg~~~--~~~~~~~~~~~~~~i~~~l~~gg~vliP~falGR~ 234 (622)
+ .+|+||||++...++++.++..+..++|+||+|||||++. |+++.+.+++|.+.+.+++++||+||||+|++||+
T Consensus 336 dg~~~IvYTGD~~~~~~~ll~~a~~~~~~vD~LI~ESTYg~~~~~~~~r~~~e~~l~~~I~~tl~~gG~VLIP~favGR~ 415 (630)
T TIGR03675 336 DGLYNIVYTGDFKYEKTRLLDPAVNKFPRVETLIMESTYGGRDDYQPSREEAEKELIKVVNETIKRGGKVLIPVFAVGRA 415 (630)
T ss_pred CCCEEEEEeCCCCCCCCcCccchhhcCCCCCEEEEeCccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEechhHHH
Confidence 3 6999999999988887776654455899999999999877 88899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCccEEEECchHHHHHHHHHHhHHhhhHHHHHHHh--cCCCccccccccccccc----ccccC
Q psy8348 235 QELLLILDEYWSLHPELHDIPIYYASSLAKKCMSVYQTYINAMNDRIRRQIS--INNPFVFKHISNLKGID----HFEDI 308 (622)
Q Consensus 235 qEll~iL~~~~~~~~~l~~ipI~~~s~~a~~~~~~y~~~~~~~~~~i~~~~~--~~npf~f~~i~~l~~~~----~~~~~ 308 (622)
||++.+|+++|.+. .++++|||++| ++.+++++|+.|.+||++.+++.+. ..|||.++++..+.+.+ .....
T Consensus 416 QEll~~L~~~~~~g-~lp~~pIy~dg-~~~~~t~i~~~~~e~l~~~~~~~i~~~~~npf~~~~~~~v~~~~~~~~i~~~~ 493 (630)
T TIGR03675 416 QEVMLVLEEAMRKG-LIPEVPVYLDG-MIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEIFVRVEGSDERREIIESD 493 (630)
T ss_pred HHHHHHHHHHHHhC-CCCCCcEEEEc-hHHHHHHHHHHhHHHhCHHHHHHHhhcCCCcccCCceEEeCCHHHHHHHhcCC
Confidence 99999999999754 56789999997 8889999999999999998877653 57999988877665532 23357
Q ss_pred CCeEEEecCCCCCcchHHHHHHHHcCCCCCeEEEeccCCCCCcccccccCCceeeeccC----eEeeceeeEEEEe-ccc
Q psy8348 309 GPCVVMASPGMMQSGLSRELFEMWCTDAKNGVIIAGYCVEGTLAKTILSEPEEVIGMSG----QRLPLKMSVDYIS-FSA 383 (622)
Q Consensus 309 ~p~Vvias~gml~~G~s~~~l~~~~~d~~n~vil~gy~~~gt~~~~l~~~~~~~~~~~g----~~i~~~~~v~~i~-fS~ 383 (622)
+||||+||||||++|+++++|++|++|++|+|+|+|||++||+|++|+++.+++. +.| +.++++|+|+.+. ||+
T Consensus 494 ~p~VIiatsGMl~gG~~~~~l~~l~~d~kn~IifvGyqa~gTlGr~l~~g~~~i~-i~g~~~~~~i~v~~~V~~~~gfSa 572 (630)
T TIGR03675 494 EPAIILATSGMLNGGPVVEYLKLLAPDPRNSLVFVGYQAEGTLGRRIQSGWREIP-LTDEGKTETIKINMEVETVEGFSG 572 (630)
T ss_pred CCEEEEECCCCCCcchHHHHHHHHcCCCCCeEEEeCCCCCCchHHHHhcCCcEEE-ecCCCCceEEEEEEEEEEeCCccc
Confidence 8999999999999999999999999999999999999999999999999877653 445 8899999999996 999
Q ss_pred CCCHHHHHHHHHHhCC--CeEEEEcCChHHHHHHHHHHHHhhcCCCCCceEEeeCCCCcEEEE
Q psy8348 384 HTDYQQTSEFVRELRP--AHVVLVHGEQNEMSRLKAALTREYEDDPNTSMELYNPRNTVSVDL 444 (622)
Q Consensus 384 Had~~el~~~i~~l~P--~~VilvHGe~~~~~~l~~~l~~~~~~~~~~~~~v~~p~ng~~v~l 444 (622)
|||+.||.+|++.++| ++|++||||+..+.+|++.|.++++ +++++|+|||+++|
T Consensus 573 HaD~~~L~~~v~~~~p~p~~v~lvHGe~~~~~~la~~l~~~~~------~~~~~P~~~e~~~~ 629 (630)
T TIGR03675 573 HSDRRQLMNYVRRMQPKPEKILLNHGEPSKILDLASSIYKKFN------IETYAPKNLETIRL 629 (630)
T ss_pred cCCHHHHHHHHHhcCCCCCEEEEEcCCHHHHHHHHHHHHHHhC------CcEEeCCCCCEEEe
Confidence 9999999999999965 9999999999999999999988875 45899999999987
No 5
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.5e-69 Score=579.42 Aligned_cols=425 Identities=38% Similarity=0.642 Sum_probs=379.8
Q ss_pred CcEecCCCCCCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCe
Q psy8348 1 MKTLKGAGQEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGR 80 (622)
Q Consensus 1 ~v~~LG~g~evG~sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~ 80 (622)
.+.++|+++++|++|++++.++.+||+|||++++... ...|... ..+ ++|+++|||+|+||+|++|++.... ++++
T Consensus 2 ~~~~~g~~~evg~s~~~l~~~~~~il~D~G~~~~~~~-~~~p~~~-~~~-~vDavllTHaHlDH~g~lp~l~~~~-~~~~ 77 (427)
T COG1236 2 TLRFLGAAREVGRSCVLLETGGTRILLDCGLFPGDPS-PERPLLP-PFP-KVDAVLLTHAHLDHIGALPYLVRNG-FEGP 77 (427)
T ss_pred ceecccccCCcCcEEEEEEECCceEEEECCCCcCcCC-ccCCCCC-CCC-CcCEEEeccCchhhhcccHHHHHhc-cCCc
Confidence 3689999999999999999999999999999998776 6677765 333 8999999999999999999988765 7899
Q ss_pred EEechhhHHHHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEEeCCCCCCcEEEEEEECCE
Q psy8348 81 CFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGV 160 (622)
Q Consensus 81 Iy~t~~t~~i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~~aGH~~Gs~~~~I~~~~~ 160 (622)
||+|++|+.+++.++.|..+.... ...++|++.|+..+++++++++|+++++++++++++|+|||++||++|.++.++.
T Consensus 78 v~aT~~T~~l~~~~l~d~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~AGHilGsa~~~le~~~~ 156 (427)
T COG1236 78 VYATPPTAALLKVLLGDSLKLAEG-PDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNAGHILGSAAILLEVDGG 156 (427)
T ss_pred eeeccCHHHHHHHHHHHHHhhhcC-CCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEecCCCccceeEEEEEeCCc
Confidence 999999999999999999988765 5567899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCccccccccCCCCCCCcEEEEcccCCCCCCchhhhHHHHHHHHHHHHHHcCCeEEEeecccchHHHHHHH
Q psy8348 161 KILYTGDFSRQEDRHLMAAEIPPVKPDILITESTYGTHVHEQREEREGRFTSLIHDIVNRGGRCLIPVFALGRAQELLLI 240 (622)
Q Consensus 161 ~IlytGD~~~~~~~~l~~a~~~~~~~DvLI~EsTyg~~~~~~~~~~~~~~~~~i~~~l~~gg~vliP~falGR~qEll~i 240 (622)
+|+||||++...++++.+++.+.. +|+||+|||||+..|+++.+++++|.+.+.+++.+||++|||+|++||+||||.+
T Consensus 157 ~ilytGD~~~~~~~l~~~a~~~~~-~DvLI~EsTYg~~~~~~r~~~e~~f~~~v~~~l~~GG~vlipafa~graQEll~~ 235 (427)
T COG1236 157 RILYTGDVKRRKDRLLNGAELPPC-IDVLIVESTYGDRLHPNRDEVERRFIESVKAALERGGTVLIPAFALGRAQELLLI 235 (427)
T ss_pred eEEEEeccCCCcCCCCCccccCCC-CcEEEEecccCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEecccccHHHHHHHH
Confidence 999999999999999998887765 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCccEEEECchHHHHHHHHHHhHHhhhHHHHHHHhcCCCccccccccccc-ccccccCCCeEEEecCCC
Q psy8348 241 LDEYWSLHPELHDIPIYYASSLAKKCMSVYQTYINAMNDRIRRQISINNPFVFKHISNLKG-IDHFEDIGPCVVMASPGM 319 (622)
Q Consensus 241 L~~~~~~~~~l~~ipI~~~s~~a~~~~~~y~~~~~~~~~~i~~~~~~~npf~f~~i~~l~~-~~~~~~~~p~Vvias~gm 319 (622)
|+++|.++ ++|||++|++++.|+.+++.+.+|++....+..... |+.++.... .....+.+|+||++++||
T Consensus 236 L~~~~~~~----~~pi~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~vi~a~~gm 307 (427)
T COG1236 236 LRELGFAG----DYPIYVDGPIARVALAYAKYPIGLDLPDLLKVAESR----FRFVESRRNSMREGIDKGPAVVLAAPGM 307 (427)
T ss_pred HHHHhccC----CCCeEeccHHHHHHHHHHHhchhccChHHHHHHHhh----cccccchhhhhhhhccCCceEEEEeccc
Confidence 99998765 799999999999999999999999988877654322 333333322 223456899999999999
Q ss_pred CCcchHHHHHHHHcCCCCCeEEEeccCCCCCcccccccCCceeeeccCeEeeceeeEEEEecccCCCHHHHHHHHHHhCC
Q psy8348 320 MQSGLSRELFEMWCTDAKNGVIIAGYCVEGTLAKTILSEPEEVIGMSGQRLPLKMSVDYISFSAHTDYQQTSEFVRELRP 399 (622)
Q Consensus 320 l~~G~s~~~l~~~~~d~~n~vil~gy~~~gt~~~~l~~~~~~~~~~~g~~i~~~~~v~~i~fS~Had~~el~~~i~~l~P 399 (622)
++.|+++.++++|+.+++|.++++||+++||+++.+++.+. .....|..++++++|+.+.||+|+|+.++.+||+...|
T Consensus 308 ~~~g~~~~~~~~~~~~~~n~~~l~~~~~~~t~gr~~~~~~~-~~~~~~~~i~~~~~ve~~~~s~Had~~~l~~~i~~~~~ 386 (427)
T COG1236 308 LKGGRSRYYLKHLLSDEKNWVLLPGYQAEGTLGRVLLEGGT-SVHIKGIEIKVKARVEELDFSAHADGDELLEFIKDISP 386 (427)
T ss_pred ccCCcHHHHHHHHhcCCcceEEEcccccCCcchhHHhcCCc-EEeecceeecccceEEEeccccccCcHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999988876 34567889999999999999999999999999999999
Q ss_pred CeEEEEcCChHHHHHHHHHHHHhhcCCCCCceEEeeCCCCcEEEE
Q psy8348 400 AHVVLVHGEQNEMSRLKAALTREYEDDPNTSMELYNPRNTVSVDL 444 (622)
Q Consensus 400 ~~VilvHGe~~~~~~l~~~l~~~~~~~~~~~~~v~~p~ng~~v~l 444 (622)
++|+++||+...+..+++.+.+++... ..+++|+||+.+++
T Consensus 387 ~~v~~~Hg~~~~~~~~~~~~~~e~~~~----~~~~~p~~~~~~~~ 427 (427)
T COG1236 387 PKVVLVHGEPEYGAALRARLLEELIGI----RELELPANGEEYEL 427 (427)
T ss_pred ceEEEEeCCchhhhHHHHHHHHhhCCc----ceeecCCCccccCC
Confidence 999999999998877888777765321 15899999998653
No 6
>KOG1135|consensus
Probab=100.00 E-value=2.7e-49 Score=422.17 Aligned_cols=439 Identities=27% Similarity=0.512 Sum_probs=370.5
Q ss_pred EecCCCCCCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEE
Q psy8348 3 TLKGAGQEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCF 82 (622)
Q Consensus 3 ~~LG~g~evG~sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy 82 (622)
+.+-|..+-|.-||++++++.+|||||||++.+. ...++.+.. -..+||+||+||...-|+|||||.+.+.+++++||
T Consensus 5 ~~~~g~~de~~~cyllqiD~~~iLiDcGwd~~f~-~~~i~~l~~-~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VY 82 (764)
T KOG1135|consen 5 TTLCGATDEGPLCYLLQIDGVRILIDCGWDESFD-MSMIKELKP-VIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVY 82 (764)
T ss_pred EeeccccCCCcceEEEEEcCeEEEEeCCCcchhc-cchhhhhhc-ccccccEEEecCCChHHhccchhhHhhCCccceEE
Confidence 3344444567889999999999999999976542 222222111 24689999999999999999999999999999999
Q ss_pred echhhHHHHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeC----CEEEEEEeCCCCCCcEEEEEEEC
Q psy8348 83 MTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVN----GIKFSAYNAGHVLGAAMFLIEIA 158 (622)
Q Consensus 83 ~t~~t~~i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~----gi~v~~~~aGH~~Gs~~~~I~~~ 158 (622)
+|-|+..+.+..+.|..+-...-.+..+|+.+|+..+|+++..++|.|++.+. |+++++|+|||++|.+.|.|...
T Consensus 83 AT~PV~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI~k~ 162 (764)
T KOG1135|consen 83 ATLPVIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKISKV 162 (764)
T ss_pred EecchhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEEEec
Confidence 99999999999888876654333466789999999999999999999999984 67999999999999999999999
Q ss_pred CEEEEEEcCCCCCccccccccCCCC-CCCcEEEEcccCCCCCCchhhhHHHHHHHHHHHHHHcCCeEEEeecccchHHHH
Q psy8348 159 GVKILYTGDFSRQEDRHLMAAEIPP-VKPDILITESTYGTHVHEQREEREGRFTSLIHDIVNRGGRCLIPVFALGRAQEL 237 (622)
Q Consensus 159 ~~~IlytGD~~~~~~~~l~~a~~~~-~~~DvLI~EsTyg~~~~~~~~~~~~~~~~~i~~~l~~gg~vliP~falGR~qEl 237 (622)
+++|+|+=||++..++|+.+..+.. .+|.+||+++....-..++|..|.+.|...|.++++.||+|+||+...||..||
T Consensus 163 ~E~ivYavd~NHkKe~HLNG~~l~~l~RPsllITda~~~~~~~~~rkkRDe~f~d~v~~~L~~~G~VlipVDtAgRvLEL 242 (764)
T KOG1135|consen 163 GEDIVYAVDFNHKKERHLNGCSLSGLNRPSLLITDANHALYSQPRRKKRDEQFLDTVLKTLRSGGNVLIPVDTAGRVLEL 242 (764)
T ss_pred CceEEEEEecccchhcccCCccccccCCcceEEeccccccccccchhHHHHHHHHHHHHHhcCCCcEEEEecccHHHHHH
Confidence 9999999999999999999876653 689999999876665667888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC-CCCCccEEEECchHHHHHHHHHHhHHhhhHHHHHHHh--cCCCcccccccccccccccc--cCCCeE
Q psy8348 238 LLILDEYWSLHP-ELHDIPIYYASSLAKKCMSVYQTYINAMNDRIRRQIS--INNPFVFKHISNLKGIDHFE--DIGPCV 312 (622)
Q Consensus 238 l~iL~~~~~~~~-~l~~ipI~~~s~~a~~~~~~y~~~~~~~~~~i~~~~~--~~npf~f~~i~~l~~~~~~~--~~~p~V 312 (622)
+.+|+++|.+.. .+..+|+++.|+.+.+...+.+..++||++++-+.|. ..|||.|+|+..+.+...+. ..||+|
T Consensus 243 a~iLdqlws~~~~gl~~~pl~~Ls~vs~~tveyAKSmiEWmsdkl~k~fe~~r~NpFefrhi~l~~~~~dlsr~p~gpkV 322 (764)
T KOG1135|consen 243 ALILDQLWSQSDAGLSQYPLAFLSYVSSRTVEYAKSMIEWMSDKLSKMFEEARNNPFEFRHITLCHSLQDLSRVPPGPKV 322 (764)
T ss_pred HHHHHHHHhcccCCCcccceeeeeccchhHHHHHHHHHHHhhhHHHHhhhhccCCcceeeeeeeecCHHHHhcCCCCCeE
Confidence 999999998753 5667999999999999999999999999999998874 57999999999887654333 367999
Q ss_pred EEecCCCCCcchHHHHHHHHcCCCCCeEEEeccCCCCCcccccccCCce---e---------------------e-----
Q psy8348 313 VMASPGMMQSGLSRELFEMWCTDAKNGVIIAGYCVEGTLAKTILSEPEE---V---------------------I----- 363 (622)
Q Consensus 313 vias~gml~~G~s~~~l~~~~~d~~n~vil~gy~~~gt~~~~l~~~~~~---~---------------------~----- 363 (622)
|+||...|..|.||++|-.|+.|++|.|+||....+||+|+++++.|+. + .
T Consensus 323 Vlas~~~lE~Gfsrd~fl~w~~d~~N~illt~r~~~~tLa~el~~~~e~~k~i~l~~r~rv~LeGeEl~ey~~~e~~r~e 402 (764)
T KOG1135|consen 323 VLASVPDLECGFSRDLFLEWASDPRNLILLTERGSPGTLARELISMPERAKRIELKVRKRVKLEGEELLEYLEGERLRNE 402 (764)
T ss_pred EEeeccchhcchhHHHHHHHhcCCcceEEEecCCCchhHHHHHhhcccccceeeeeeecccCCchHHHHHHHhhhhhhhh
Confidence 9999999999999999999999999999999988999998877654322 0 0
Q ss_pred ------------------e-------------------------------------------------------------
Q psy8348 364 ------------------G------------------------------------------------------------- 364 (622)
Q Consensus 364 ------------------~------------------------------------------------------------- 364 (622)
.
T Consensus 403 ~~~~~~~~~~~~~~~~~~Sd~~dd~d~~~~~~~~Hd~~~~~~~~~~~~f~~~~~~~~~MFPy~e~r~k~DdYGEiI~~~d 482 (764)
T KOG1135|consen 403 DALRLNVNRDVEIDSSHESDDSDDEDMENDTEVRHDIMSKAGKSTKDGFFKSAKSKHPMFPYIEERRKWDDYGEIIKPDD 482 (764)
T ss_pred hhHHhhccCCccccccccCCcccccccccccccchhhhhccCCcccccccccccccCcccCCcHHhccccccccccCHHH
Confidence 0
Q ss_pred --------------------------------------------ccC-eEeeceeeEEEEecccCCCHHHHHHHHHHhCC
Q psy8348 365 --------------------------------------------MSG-QRLPLKMSVDYISFSAHTDYQQTSEFVRELRP 399 (622)
Q Consensus 365 --------------------------------------------~~g-~~i~~~~~v~~i~fS~Had~~el~~~i~~l~P 399 (622)
+.| ..+.++|+|+.|.|-+-+|...++.+|..++|
T Consensus 483 f~v~~~~~~~~gak~~~pv~~~~~Ee~~g~~~~~~~~~~~ptk~is~~~~i~vs~~v~~iDyeGisDgrSik~ii~ql~P 562 (764)
T KOG1135|consen 483 FTVIRKEDLKDGAKKNEPVVDNKSEEEDGYSDEIEDLSEVPTKCISGEKGIEVSCRVEKIDYEGISDGRSIKKIIAQLSP 562 (764)
T ss_pred cccccccchhhhhhccCCcccccccccccccCchhhhhcccceeeccccceEEEEEEEEeeeeccccchhHHHHHhccCc
Confidence 001 13677888999999999999999999999999
Q ss_pred CeEEEEcCChHHHHHHHHHHHHhhcCCCCCceEEeeCCCCcEEEEeec
Q psy8348 400 AHVVLVHGEQNEMSRLKAALTREYEDDPNTSMELYNPRNTVSVDLYFK 447 (622)
Q Consensus 400 ~~VilvHGe~~~~~~l~~~l~~~~~~~~~~~~~v~~p~ng~~v~l~~~ 447 (622)
+.+|+|||.......++..-+. .+.. ...||+|+-||.+.+...
T Consensus 563 r~lIlvh~s~e~~r~~~~~c~~-l~~~---~~~vyaP~~~e~idvtsd 606 (764)
T KOG1135|consen 563 RKLILVHGSAEDTRDLKHTCAS-LGCF---TIDVYAPKSGEIIDVTSD 606 (764)
T ss_pred cEEEEecCCchhhHHHHHHHHh-cCCC---cceeecccccceEEeeeh
Confidence 9999999999887777664443 2221 257999999999999743
No 7
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=100.00 E-value=2.9e-45 Score=399.52 Aligned_cols=388 Identities=18% Similarity=0.234 Sum_probs=277.1
Q ss_pred cEecCCCCCCCCcEEEEEECCeEEEEeCCCCCCCCC---CC-CCCCCCCC--CCCCccEEEcCCCchhhhcchHHHHHhc
Q psy8348 2 KTLKGAGQEVGRSCIMLEFKNKSIMMDCGIHPGLSG---MD-ALPFVDLV--ESDQIDLLLISHFHLDHCGALPWFLLKT 75 (622)
Q Consensus 2 v~~LG~g~evG~sc~lI~~~~~~ILiD~G~~~~~~~---~~-~lp~~~~~--~~~~Id~IlITH~H~DHiggLp~l~~~~ 75 (622)
+++|||.+|+|+||++++.++..+|||||....... .+ .+|.+..+ ...++|+|||||+|.||+||+|+++...
T Consensus 3 i~~lGG~~eiG~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~ 82 (422)
T TIGR00649 3 IFALGGLGEIGKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHTV 82 (422)
T ss_pred EEEccCCCccCCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHhC
Confidence 689999999999999999999999999997532111 11 23444333 3568999999999999999999988753
Q ss_pred CCCCeEEechhhHHHHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeC-CEEEEEEeCCCC-CCcEEE
Q psy8348 76 GFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVN-GIKFSAYNAGHV-LGAAMF 153 (622)
Q Consensus 76 ~~~~~Iy~t~~t~~i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~-gi~v~~~~aGH~-~Gs~~~ 153 (622)
+ ..+||+++.|..+++..+... . +. . ...+..+++++.++++ ++++++++++|+ +||++|
T Consensus 83 ~-~~~Vy~~~~t~~~l~~~~~~~----~-------~~-----~-~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~ 144 (422)
T TIGR00649 83 G-FPPIYGTPLTIALIKSKIKEN----K-------LN-----V-RTDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGF 144 (422)
T ss_pred C-CCeEEeCHHHHHHHHHHHHhc----C-------CC-----C-CCceEEeCCCCEEEeCCceEEEEEECCCCCcceEEE
Confidence 2 368999999988776443210 0 00 0 0135678899999995 699999999995 799999
Q ss_pred EEEECCEEEEEEcCCCCCcccccc-cc------CCCCCCCcEEEEcccCCCCCCchhhhHHHHHHHHHHHHH-HcCCeEE
Q psy8348 154 LIEIAGVKILYTGDFSRQEDRHLM-AA------EIPPVKPDILITESTYGTHVHEQREEREGRFTSLIHDIV-NRGGRCL 225 (622)
Q Consensus 154 ~I~~~~~~IlytGD~~~~~~~~l~-~a------~~~~~~~DvLI~EsTyg~~~~~~~~~~~~~~~~~i~~~l-~~gg~vl 225 (622)
.++.++++++||||+......... .. +....++|+||+||||+...... ..++.+.+.+.+++ +.+|+++
T Consensus 145 ~i~~~~~~ivytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~~~~~--~~e~~~~~~i~~~~~~~~~~vi 222 (422)
T TIGR00649 145 ALHTPLGYIVYTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVENPGFT--PSEAKVLEQLNDIFKNAKGRVI 222 (422)
T ss_pred EEEeCCcEEEECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCCCCCC--CCHHHHHHHHHHHHHhCCCEEE
Confidence 999999999999999875443221 11 12234799999999998743322 23455666677766 5789999
Q ss_pred Eeecc--cchHHHHHHHHHHHHHhCCCCCCccEEEECchHHHHHHHHHHhHHhhhHHHHHHHhcCCCc-ccccccccccc
Q psy8348 226 IPVFA--LGRAQELLLILDEYWSLHPELHDIPIYYASSLAKKCMSVYQTYINAMNDRIRRQISINNPF-VFKHISNLKGI 302 (622)
Q Consensus 226 iP~fa--lGR~qEll~iL~~~~~~~~~l~~ipI~~~s~~a~~~~~~y~~~~~~~~~~i~~~~~~~npf-~f~~i~~l~~~ 302 (622)
+++|+ ++|.|+++.++.++ +.||++.+....+.+.+++.+ ++++ .|- .+...+.+
T Consensus 223 v~~fa~~~~R~~~i~~~a~~~--------~r~v~v~g~~~~~~~~~~~~~-g~~~----------~~~~~~~~~~~i--- 280 (422)
T TIGR00649 223 VATFASNIHRVQQLIQIARKQ--------GRKFAVYGRSMEHLFGIARRL-GLIK----------NPHNNFISLKEV--- 280 (422)
T ss_pred EEEccccHHHHHHHHHHHHHh--------CCEEEEECccHHHHHHHHHHc-CCcc----------CCccceeCHHHH---
Confidence 99999 99999999998876 789999987777776665442 2221 110 01111111
Q ss_pred cccccCCCeEEEecCCCCCcchHHHHHHHHcCCC--------CCeEEEeccCCCCCcccccccCCceeeeccCeEeecee
Q psy8348 303 DHFEDIGPCVVMASPGMMQSGLSRELFEMWCTDA--------KNGVIIAGYCVEGTLAKTILSEPEEVIGMSGQRLPLKM 374 (622)
Q Consensus 303 ~~~~~~~p~Vvias~gml~~G~s~~~l~~~~~d~--------~n~vil~gy~~~gt~~~~l~~~~~~~~~~~g~~i~~~~ 374 (622)
... ..+++||++|++ ++++ ...+.+++.++ .++||++.. +++|++.+... ..++|...+..+
T Consensus 281 ~~~-~~~~~vii~tg~--~g~~-~~~l~~~~~~~~~~i~l~~~d~vi~s~~---~~~G~~~~~~~---~~~~~~~~~~~~ 350 (422)
T TIGR00649 281 NNS-PDENYLIITTGS--QGEP-YAALTRIANNEHEQIRIRKGDTVVFSAP---PIPGNENIAVS---ILLDIRLNEVGA 350 (422)
T ss_pred hcC-CcccEEEEEeCC--CCcH-HHHHHHHhCCCCCcEEeCCCCEEEEECC---CCCcHHHHHHH---HHHHHHHHhcCC
Confidence 111 147899999877 6666 77788888864 478888854 44444311110 112222333455
Q ss_pred eEEE-EecccCCCHHHHHHHHHHhCCCeEEEEcCChHHHHHHHHHHHHhhcCCCCCceEEeeCCCCcEEEEe
Q psy8348 375 SVDY-ISFSAHTDYQQTSEFVRELRPAHVVLVHGEQNEMSRLKAALTREYEDDPNTSMELYNPRNTVSVDLY 445 (622)
Q Consensus 375 ~v~~-i~fS~Had~~el~~~i~~l~P~~VilvHGe~~~~~~l~~~l~~~~~~~~~~~~~v~~p~ng~~v~l~ 445 (622)
++.. ++||+||+.+||..|++.++|+++||||||++++..+++ ++++.|.++ .++++|+||+++++.
T Consensus 351 ~~~~~~h~SgHa~~~dl~~~i~~~~Pk~~ipvHge~~~~~~~~~-~a~~~g~~~---~~~~~~~nG~~~~~~ 418 (422)
T TIGR00649 351 RVIKRIHVSGHASQEDHKLLLRLLKPKYIIPVHGEYRMLINHTK-LAEEEGYPG---ENIFILRNGDVLEIN 418 (422)
T ss_pred EEEeceEecCCCCHHHHHHHHHHhCCCEEEecCCcHHHHHHHHH-HHHHcCCCc---ccEEEecCCcEEEec
Confidence 5544 899999999999999999999999999999999998887 445667643 369999999999985
No 8
>KOG1138|consensus
Probab=100.00 E-value=1e-41 Score=351.99 Aligned_cols=450 Identities=22% Similarity=0.374 Sum_probs=341.8
Q ss_pred CCcEEEEEECCeEEEEeCCCC----------CCCC--CC-----------------------------CC-----CCCCC
Q psy8348 12 GRSCIMLEFKNKSIMMDCGIH----------PGLS--GM-----------------------------DA-----LPFVD 45 (622)
Q Consensus 12 G~sc~lI~~~~~~ILiD~G~~----------~~~~--~~-----------------------------~~-----lp~~~ 45 (622)
.-.|.+++....+||+|||++ |+.. .+ +. +|..+
T Consensus 11 t~pc~llk~~~~rIllDcpld~t~~~nFlPlp~~qSpr~~n~p~~~~~~d~~kfq~~elke~~~rvfvesppe~~l~~t~ 90 (653)
T KOG1138|consen 11 TYPCKLLKLQRRRILLDCPLDLTAILNFLPLPGVQSPRYSNLPSLDAQNDIQKFQDLELKECCGRVFVESPPEFTLPATH 90 (653)
T ss_pred CCCchheeccceeEEecCCcchhhhhccccCccccCcccccCccccccCccchhhhHHHHHhCCceEEcCCchhccchhh
Confidence 346888888889999999986 1110 00 11 12223
Q ss_pred CCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhHHHHHHHHHhHHhhh-----------------------
Q psy8348 46 LVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVS----------------------- 102 (622)
Q Consensus 46 ~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~~i~~~~l~d~~~~~----------------------- 102 (622)
.++.+.||+|+||.+| ..-||||+.+.+||.|+||+|++|.++.+.++++.+.+.
T Consensus 91 lld~stiDvILISNy~--~mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier~p~~~S~~~Wk~k~~~~~lps 168 (653)
T KOG1138|consen 91 LLDASTIDVILISNYM--GMLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIERFPKASSAPLWKKKLDSELLPS 168 (653)
T ss_pred hhcccceeEEEEcchh--hhcccceeecCCCceeEEEEechHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhcCC
Confidence 3467899999999999 789999999999999999999999999999998866442
Q ss_pred ------cccccccCCCHHHHHHhhcccEEecCCCeEEeC-CEEEEEEeCCCCCCcEEEEEEECCEEEEEEcCCCCCcccc
Q psy8348 103 ------NISTEQMLYTESDLEKSMDKIETINFHEEKDVN-GIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDFSRQEDRH 175 (622)
Q Consensus 103 ------~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~-gi~v~~~~aGH~~Gs~~~~I~~~~~~IlytGD~~~~~~~~ 175 (622)
..+.|+.+|+.+|++.++.+++.+.|.|++++. -+.+++..+||.+||+.|.|.++++++-|..+.+.... |
T Consensus 169 plk~~~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtplsSG~~lGSsnW~I~t~nek~sYvS~Ss~ltt-h 247 (653)
T KOG1138|consen 169 PLKKAVFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLSSGYDLGSSNWLINTPNEKLSYVSGSSFLTT-H 247 (653)
T ss_pred CchhhccccceeeeeehhHHHHHHHhheecccceeeeccceEEEEeccccccccccceEEecCCcceEEEecCccccc-C
Confidence 123688899999999999999999999999996 58999999999999999999999999999999875432 2
Q ss_pred cccc-CCCCCCCcEEEEcccCCCCCCchhhhHHHHHHHHHHHHHHcCCeEEEeecccchHHHHHHHHHHHHHhCCCCCCc
Q psy8348 176 LMAA-EIPPVKPDILITESTYGTHVHEQREEREGRFTSLIHDIVNRGGRCLIPVFALGRAQELLLILDEYWSLHPELHDI 254 (622)
Q Consensus 176 l~~a-~~~~~~~DvLI~EsTyg~~~~~~~~~~~~~~~~~i~~~l~~gg~vliP~falGR~qEll~iL~~~~~~~~~l~~i 254 (622)
..+. ..+.+..|+||..+-- .-...+..+..-+|+..+..+++++|+||+||++.|-..|+++.+.++..+. .+.+.
T Consensus 248 ~r~md~a~Lk~~Dvli~T~ls-ql~tanpd~m~gelc~nvt~~~rn~GsvL~PcyPsGviydl~Ecls~~idna-~ls~~ 325 (653)
T KOG1138|consen 248 PRPMDQAGLKETDVLIYTGLS-QLPTANPDEMGGELCKNVTLTGRNHGSVLLPCYPSGVIYDLIECLSQDIDNA-GLSDT 325 (653)
T ss_pred CccccccccccccEEEEeccc-ccccCCccchhhhHHHHHHHHhhcCCceeeeccCCchhhHHHHHhhhccccc-CCcCC
Confidence 2222 2344689999986531 1122334566778999999999999999999999999999999999887654 45689
Q ss_pred cEEEECchHHHHHHHHHHhHHhhhHHHHHHH-hcCCCcccccccccccc-------cccc--cCCCeEEEecCCCCCcch
Q psy8348 255 PIYYASSLAKKCMSVYQTYINAMNDRIRRQI-SINNPFVFKHISNLKGI-------DHFE--DIGPCVVMASPGMMQSGL 324 (622)
Q Consensus 255 pI~~~s~~a~~~~~~y~~~~~~~~~~i~~~~-~~~npf~f~~i~~l~~~-------~~~~--~~~p~Vvias~gml~~G~ 324 (622)
|||+.||.|...++..+...+||....++.. .++.||....+-..... ..|. -+.|||+++++.+++.|.
T Consensus 326 P~yfISpvadSsla~s~ilaEwls~akqnkvylpe~p~~hs~lI~~~rlkiy~sl~g~fSndfrqpcvvf~~H~SlRfgd 405 (653)
T KOG1138|consen 326 PIYFISPVADSSLATSDILAEWLSLAKQNKVYLPEAPFPHSTLITINRLKIYLSLLGLFSNDFRQPCVVFMGHPSLRFGD 405 (653)
T ss_pred cceEecccchhhhhHHHHHHHHHHhhhccceeccCCCCCCceEEeecceeehHHHHHHHhhhcccceeEecCCcchhhhH
Confidence 9999999999999999999999998877665 45677653322111111 1122 278999999999999999
Q ss_pred HHHHHHHHcCCCCCeEEEeccCCCCCcccccccCCceeeeccCeEeeceeeEEEEecccCCCHHHHHHHHHHhCCCeEEE
Q psy8348 325 SRELFEMWCTDAKNGVIIAGYCVEGTLAKTILSEPEEVIGMSGQRLPLKMSVDYISFSAHTDYQQTSEFVRELRPAHVVL 404 (622)
Q Consensus 325 s~~~l~~~~~d~~n~vil~gy~~~gt~~~~l~~~~~~~~~~~g~~i~~~~~v~~i~fS~Had~~el~~~i~~l~P~~Vil 404 (622)
..++++-|..+|+|++|++.. -+......+| .-|+.|++.++++....+|+++.++++.++|++|+.
T Consensus 406 v~h~~e~~g~sp~NsvI~tdp----D~~~~~vl~P---------frpLamK~i~cpidtrlnfqql~kLlkelqPk~vlc 472 (653)
T KOG1138|consen 406 VVHFLECWGLSPKNSVIFTDP----DFSYLLVLAP---------FRPLAMKIIYCPIDTRLNFQQLPKLLKELQPKIVLC 472 (653)
T ss_pred HHHHHHHhcCCCCCceEEeCC----CCchhhhhcC---------CccccceeEeccccccccHHHHHHHHHHhCCCEEEC
Confidence 999999999999999999843 2222222223 346778899999999999999999999999998775
Q ss_pred EcCChHHHHHHHHHHHHhhcCCCCCceEEeeCCCCcEEEEeecc-----eehhhhhcccccccCCCC----ceEEEEEEe
Q psy8348 405 VHGEQNEMSRLKAALTREYEDDPNTSMELYNPRNTVSVDLYFKG-----EKTAKVMGELAVENLKPD----AALSGIIVK 475 (622)
Q Consensus 405 vHGe~~~~~~l~~~l~~~~~~~~~~~~~v~~p~ng~~v~l~~~~-----~~~~~~~g~~~~~~~~~~----~~~~g~l~~ 475 (622)
-- .+.+-..++......+-.- ..+..-+.+|.+.+++++ +....++.+|.+++.++| .+++|+|..
T Consensus 473 pe-aytqp~~~ap~~~i~~~d~----~pi~t~~c~ei~~lp~Krkl~~veItpela~kLs~ke~~~~~~~iAtl~~~L~~ 547 (653)
T KOG1138|consen 473 PE-AYTQPIPLAPIKTISILDY----FPIKTLHCPEIVDLPNKRKLVSVEITPELASKLSPKELRQGEFGIATLKGVLLM 547 (653)
T ss_pred hh-hhcCCCCccchheehhccc----cccceeehhHHhcCccccceeEEEEcHHHHhhCChhhccCceeEEEEEEEEEEE
Confidence 42 2211111111111112110 124455677888888653 445677788888777776 589999999
Q ss_pred eCCeeEEeC
Q psy8348 476 RNFNYHLLA 484 (622)
Q Consensus 476 ~~~~~~l~~ 484 (622)
+|+++.|+.
T Consensus 548 ~d~kh~Lvp 556 (653)
T KOG1138|consen 548 KDGKHRLVP 556 (653)
T ss_pred ecCceeeee
Confidence 999999998
No 9
>PF11718 CPSF73-100_C: Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term; InterPro: IPR021718 This is the C-terminal conserved region of the pre-mRNA 3'-end-processing of the polyadenylation factor CPSF-73/CPSF-100 proteins. The exact function of this domain is not known.
Probab=100.00 E-value=4.8e-41 Score=329.99 Aligned_cols=158 Identities=44% Similarity=0.781 Sum_probs=147.3
Q ss_pred CCceEEEEEEeeCCeeEEeCCCCCCcccCcceeEEEEEEEEEeeccHHHHHHHHHhccCCeeeeccc----eEEEeeeEE
Q psy8348 465 PDAALSGIIVKRNFNYHLLAPSDLPKYTDLKASKIIQQQSVYYSGSISVLRSLISHLAGPVETLDEK----RLRAFACIE 540 (622)
Q Consensus 465 ~~~~~~g~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~ 540 (622)
+|+.+||+||++||+|+||+|+||++||+|+|++|+|||+|||++++++|+|+|+||||+|+++.+. +++||++|+
T Consensus 1 ~G~~vsGvLV~~~f~~~lm~p~DL~~yt~L~ts~i~Qrq~i~~~~~~~ll~~~L~~~fg~ve~~~~~~~~~~l~V~~~V~ 80 (216)
T PF11718_consen 1 EGQQVSGVLVKKDFDYHLMAPDDLREYTDLSTSTITQRQSIPFNGSFSLLRWHLEQMFGDVEEIEDDEGKPTLRVMGCVT 80 (216)
T ss_pred CCcEEEEEEEecCCcccEEcHHHHhhcCCeeeeEEEEEEEEEeCCCHHHHHHHHHHhhCceEEeecCCCceEEEEeeeEE
Confidence 4789999999999999999999999999999999999999999999999999999999999988744 699999999
Q ss_pred EEEeCcE-EEEEEeecCCchhHhhHHH---------------------------------------HHHHHHHHHHHhCC
Q psy8348 541 ITLEKCI-VVLEWASNPISDMYADSLI---------------------------------------SECLIEILVEMYGE 580 (622)
Q Consensus 541 ~~~~~~~-~~~~w~~~~~~d~~ad~~~---------------------------------------~~~~~~~~~~~fg~ 580 (622)
|++.++. ++|||.|||+||||||||+ .++|.++|++|||+
T Consensus 81 v~~~~~~~v~lEW~s~~~nDmiADsv~a~il~~~ssp~svk~~~~~~~h~h~~~~~~~~~~~~~~~~~~l~~~L~~qFG~ 160 (216)
T PF11718_consen 81 VTYDPNEEVVLEWESSPVNDMIADSVVAVILQIDSSPASVKLSSKSCSHSHSHDPNPHEKSDEEERLERLIELLEAQFGD 160 (216)
T ss_pred EEEeCCcEEEEEEcCCcchhHHHHHHHHHHHHHhhCCccccccccccccccccccccccccCHHHHHHHHHHHHHHHcCC
Confidence 9999865 9999999999999999999 46799999999999
Q ss_pred CccccCCCCce-EEEEECCeEEEEEcCCceEEeCChhhhcccC
Q psy8348 581 AAVPKMFKGEK-ITITVDKKKACIDLVDLSVQCEDSKLKSTVQ 622 (622)
Q Consensus 581 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~ 622 (622)
+.+...+++.. +.|++|+++|.||+.+++|||+|++||+|||
T Consensus 161 ~~~~~~~~~~~~~~v~vd~~~A~I~~~t~~Vec~d~~Lk~rve 203 (216)
T PF11718_consen 161 VEVPDIEKPKEPLSVTVDGKVAHIDLSTLEVECEDEPLKQRVE 203 (216)
T ss_pred CccccccccceeEEEEeCCcEEEEecCCCceecCCHHHHHHHH
Confidence 98875444444 9999999999999999999999999999985
No 10
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=100.00 E-value=3e-38 Score=345.62 Aligned_cols=393 Identities=20% Similarity=0.276 Sum_probs=276.4
Q ss_pred cEecCCCCCCCCcEEEEEECCeEEEEeCCCCCCCC---CCC-CCCCCCCC--CCCCccEEEcCCCchhhhcchHHHHHhc
Q psy8348 2 KTLKGAGQEVGRSCIMLEFKNKSIMMDCGIHPGLS---GMD-ALPFVDLV--ESDQIDLLLISHFHLDHCGALPWFLLKT 75 (622)
Q Consensus 2 v~~LG~g~evG~sc~lI~~~~~~ILiD~G~~~~~~---~~~-~lp~~~~~--~~~~Id~IlITH~H~DHiggLp~l~~~~ 75 (622)
+++|||.+|+|+||+++++++..+++|||...... +.+ .+|++.++ +..+|++|||||+|.||+||+||++.+.
T Consensus 11 i~~lGG~~EiGkN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~~ 90 (555)
T COG0595 11 IFALGGVGEIGKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQV 90 (555)
T ss_pred EEEecChhhhccceEEEEECCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHHHhcC
Confidence 68999999999999999999999999999863322 122 35666554 4569999999999999999999998875
Q ss_pred CCCCeEEechhhHHHHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEEeCCCCC-CcEEEE
Q psy8348 76 GFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVL-GAAMFL 154 (622)
Q Consensus 76 ~~~~~Iy~t~~t~~i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~~aGH~~-Gs~~~~ 154 (622)
.+ .|||+++.|.++++..+.+.-. ......+..++.+..++++++.+++++..|+. +|+++.
T Consensus 91 ~~-~piy~s~lt~~Li~~k~~~~~~----------------~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSIPds~g~~ 153 (555)
T COG0595 91 LF-APIYASPLTAALIKEKLKEHGL----------------FKNENELHEVKPGSEIKFGSFEVEFFPVTHSIPDSLGIV 153 (555)
T ss_pred Cc-CceecCHhhHHHHHHHHHHhcc----------------ccccCceEEeCCCCeEEeCcEEEEEEeecccCccceEEE
Confidence 32 8999999999998876653211 11123578889999999999999999999985 899999
Q ss_pred EEECCEEEEEEcCCCCCcccccc-------ccCCCCCCCcEEEEcccCCCCCCchhhhHHHHHHHHHHHHH-HcCCeEEE
Q psy8348 155 IEIAGVKILYTGDFSRQEDRHLM-------AAEIPPVKPDILITESTYGTHVHEQREEREGRFTSLIHDIV-NRGGRCLI 226 (622)
Q Consensus 155 I~~~~~~IlytGD~~~~~~~~l~-------~a~~~~~~~DvLI~EsTyg~~~~~~~~~~~~~~~~~i~~~l-~~gg~vli 226 (622)
|+++.+.|+|||||....+.... .+++...++++||+|||....+..+..| +...+.+.+++ +..|++++
T Consensus 154 i~Tp~G~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~~pg~t~SE--~~v~~~l~~i~~~a~grVIv 231 (555)
T COG0595 154 IKTPEGNIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAENPGFTPSE--SEVGENLEDIIRNAKGRVIV 231 (555)
T ss_pred EECCCccEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccCCCCCCCCH--HHHHHHHHHHHHhCCCcEEE
Confidence 99999999999999977654331 1234456799999999988755444333 34445555554 35799999
Q ss_pred eecc--cchHHHHHHHHHHHHHhCCCCCCccEEEECchHHHHHHHHHHhHHhhhHHHHHHHhcCCCcccccccccccccc
Q psy8348 227 PVFA--LGRAQELLLILDEYWSLHPELHDIPIYYASSLAKKCMSVYQTYINAMNDRIRRQISINNPFVFKHISNLKGIDH 304 (622)
Q Consensus 227 P~fa--lGR~qEll~iL~~~~~~~~~l~~ipI~~~s~~a~~~~~~y~~~~~~~~~~i~~~~~~~npf~f~~i~~l~~~~~ 304 (622)
.+|+ ++|.|.++.+..++ ++++.+.+..+.+.+.+.+....+. ...+.|. .. +....
T Consensus 232 ~tfaSni~Ri~~i~~~A~~~--------gR~vvv~GrSm~~~~~~a~~lg~~~--------~~~~~~i--~~---~~~~~ 290 (555)
T COG0595 232 TTFASNIERIQTIIDAAEKL--------GRKVVVTGRSMERLIAIARRLGYLK--------LPDESFI--EI---REVKR 290 (555)
T ss_pred EEchhhHHHHHHHHHHHHHc--------CCeEEEEcHhHHHHHHHHhhccccc--------Ccccccc--CH---HHhcc
Confidence 9999 79999999998875 7899888876665544333221110 0111121 11 11122
Q ss_pred cccCCCeEEEecCCCCCcchHHHHHHHH-------cCCCCCeEEEeccCCCCCcc--cccccCCceeeeccCeEeeceee
Q psy8348 305 FEDIGPCVVMASPGMMQSGLSRELFEMW-------CTDAKNGVIIAGYCVEGTLA--KTILSEPEEVIGMSGQRLPLKMS 375 (622)
Q Consensus 305 ~~~~~p~Vvias~gml~~G~s~~~l~~~-------~~d~~n~vil~gy~~~gt~~--~~l~~~~~~~~~~~g~~i~~~~~ 375 (622)
+++ ...++++|.. |+-+...+.+.| .-.+.+.++|+.-..+|+.+ .++++. + ...|..+....
T Consensus 291 ~~~-~~~lii~TG~--qgep~aaL~r~a~~~h~~~~i~~gD~vIfss~~ipgne~~~~~~~n~---l-~~~g~~i~~~~- 362 (555)
T COG0595 291 YPD-EEVLIICTGS--QGEPMAALSRMANGEHRYVKIKEGDTVIFSSSPIPGNEAAVYRLLNR---L-YKAGAKVITGG- 362 (555)
T ss_pred ccc-cceEEEEeCC--CCCchhhhhHhhcCCccceecCCCCeEEEeccCcCCcHHHHHHHHHH---H-HhcCcEEeecc-
Confidence 222 2456666643 222222222222 22356789999888888433 223221 0 11232221111
Q ss_pred EEEEecccCCCHHHHHHHHHHhCCCeEEEEcCChHHHHHHHHHHHHhhcCCCCCceEEeeCCCCcEEEEee
Q psy8348 376 VDYISFSAHTDYQQTSEFVRELRPAHVVLVHGEQNEMSRLKAALTREYEDDPNTSMELYNPRNTVSVDLYF 446 (622)
Q Consensus 376 v~~i~fS~Had~~el~~~i~~l~P~~VilvHGe~~~~~~l~~~l~~~~~~~~~~~~~v~~p~ng~~v~l~~ 446 (622)
...+|.|+|++.+|++.|++.++|+++||||||++.+..+++ ++.+.+...+ ++++++||+.+++.-
T Consensus 363 ~~~~hvSGHas~eel~~mi~~l~Pky~iPvHGeyr~~~~~a~-la~~~G~~~~---~i~i~~nG~v~~l~~ 429 (555)
T COG0595 363 DKKVHVSGHASREELKLMINLLRPKYLIPVHGEYRMLVAHAK-LAEEEGIPQE---NIFILRNGDVLELEG 429 (555)
T ss_pred cceeEecCCCChHHHHHHHHhhCCceecccCCCcHHHHHHHH-HHHhcCCCcc---cEEEecCceEEEecC
Confidence 146789999999999999999999999999999998777664 6767776543 699999999999974
No 11
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=99.87 E-value=6.4e-22 Score=179.73 Aligned_cols=122 Identities=38% Similarity=0.682 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCccEEEECchHHHHHHHHHHhHHhhhHHHHHHHhcC-C-Cc-ccccccccccccccc-cCC
Q psy8348 234 AQELLLILDEYWSLHPELHDIPIYYASSLAKKCMSVYQTYINAMNDRIRRQISIN-N-PF-VFKHISNLKGIDHFE-DIG 309 (622)
Q Consensus 234 ~qEll~iL~~~~~~~~~l~~ipI~~~s~~a~~~~~~y~~~~~~~~~~i~~~~~~~-n-pf-~f~~i~~l~~~~~~~-~~~ 309 (622)
+|||+.+|+++|.++....++|||++|++|.+++++|++|.+||++.+.+.+... + || .+++++.......+. ..+
T Consensus 1 ~qEll~~L~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (126)
T PF10996_consen 1 AQELLLILDEYWKEGKLPRDVPIYVDSPMAAKVLEYYKSYPEWLSESIQRKFEDKEDNPFDNFKFVKSVDESKELNALSG 80 (126)
T ss_dssp HHHHHHHHHHHHCTTSSGTTSEEEEESTCHHHHHHHHHHCGGGS-HHHHHHHHTTSTTTTTTEEEEESHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHHHhCCCCCCCcEEEEChHHHHHHHHHHHHHHHHCHHHHHHHHhcCCCCCCCeEEecccccccccccCCC
Confidence 6999999999999875446799999999999999999999999999987666432 2 44 333343333222222 259
Q ss_pred CeEEEecCCCCCcchHHHHHHHHcCCCCCeEEEeccCCCCCccccc
Q psy8348 310 PCVVMASPGMMQSGLSRELFEMWCTDAKNGVIIAGYCVEGTLAKTI 355 (622)
Q Consensus 310 p~Vvias~gml~~G~s~~~l~~~~~d~~n~vil~gy~~~gt~~~~l 355 (622)
|+|||||+|||++|++++++++|++|++|+|+|+||+.+||+|++|
T Consensus 81 p~Vvias~gml~~G~s~~~l~~~~~d~~n~Ii~~gy~~~~T~g~~l 126 (126)
T PF10996_consen 81 PKVVIASSGMLEGGRSRHYLKRLASDPRNTIIFTGYQAPGTLGRRL 126 (126)
T ss_dssp SEEEEESSTTSSSSHHHHHHHHHTTSTTSEEEESSS--TTSHHHHH
T ss_pred CeEEEeCCCCCCCCHHHHHHHHHcCCCCCeEEEecCCCCCCccccC
Confidence 9999999999999999999999999999999999999999999864
No 12
>KOG1361|consensus
Probab=99.79 E-value=2.4e-18 Score=183.21 Aligned_cols=296 Identities=21% Similarity=0.315 Sum_probs=193.9
Q ss_pred CCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhHHHHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCC
Q psy8348 50 DQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFH 129 (622)
Q Consensus 50 ~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~~i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~ 129 (622)
....+-|+||+|.||..||..-+ -.+++||+..|+.++...+. -....++.++-+
T Consensus 111 ~~~s~yFLsHFHSDHy~GL~~sW----~~p~lYCS~ita~Lv~~~~~---------------------v~~~~i~~l~l~ 165 (481)
T KOG1361|consen 111 EGCSAYFLSHFHSDHYIGLTKSW----SHPPLYCSPITARLVPLKVS---------------------VTKQSIQALDLN 165 (481)
T ss_pred cccceeeeecccccccccccccc----cCCcccccccchhhhhhhcc---------------------cChhhceeecCC
Confidence 35678999999999999975422 23559999999988754432 112356788999
Q ss_pred CeEEeCCEEEEEEeCCCCCCcEEEEEEECCE-EEEEEcCCCCCccccccccCCCCCCCcEEEEcccCCCCC--CchhhhH
Q psy8348 130 EEKDVNGIKFSAYNAGHVLGAAMFLIEIAGV-KILYTGDFSRQEDRHLMAAEIPPVKPDILITESTYGTHV--HEQREER 206 (622)
Q Consensus 130 ~~~~i~gi~v~~~~aGH~~Gs~~~~I~~~~~-~IlytGD~~~~~~~~l~~a~~~~~~~DvLI~EsTyg~~~--~~~~~~~ 206 (622)
+.+.+.++.++.++|.|++|++||+++.... ++|+||||+...+....++......+|.+..|+||.++. .+++++.
T Consensus 166 ~~~~i~~~~vt~ldAnHCPGa~mf~F~~~~~~~~lhtGDFR~s~~m~~~p~~~~~~~i~~lyLDtTycnp~y~Fpsq~es 245 (481)
T KOG1361|consen 166 QPLEIPGIQVTLLDANHCPGAVMFLFELSFGPCILHTGDFRASADMSKEPALTLEQTIDILYLDTTYCNPKYDFPSQEES 245 (481)
T ss_pred CceeecceEEEEeccccCCCceEEEeecCCCceEEecCCcccChhhhhChHHhcCCccceEEEeecccCCCCCCccHHHH
Confidence 9999999999999999999999999998654 999999999988765544444446899999999999885 5566666
Q ss_pred HHHHHHHHHHHHHcCCe--EEEeecccchHHHHHHHHHHHHHhCCCCCCccEEEECchHHHHHHHHHHhHHhhhHHHHHH
Q psy8348 207 EGRFTSLIHDIVNRGGR--CLIPVFALGRAQELLLILDEYWSLHPELHDIPIYYASSLAKKCMSVYQTYINAMNDRIRRQ 284 (622)
Q Consensus 207 ~~~~~~~i~~~l~~gg~--vliP~falGR~qEll~iL~~~~~~~~~l~~ipI~~~s~~a~~~~~~y~~~~~~~~~~i~~~ 284 (622)
.....+.+......+-+ +++++|++|+..-++++...+ +.|||+.... ...+. .
T Consensus 246 vq~v~~~i~~~~~~~~~~Li~v~~ysiGkE~l~~eia~~l--------~~kI~v~~~~-~~~~~---------------~ 301 (481)
T KOG1361|consen 246 VQEVVDVIRSHASKNDRVLIVVGTYSIGKEKLLLEIARIL--------NSKIWVEPRR-LRLLQ---------------C 301 (481)
T ss_pred HHHHHHHHHhhhhhCCceEEEEEEEecchhHHHHHHHHHh--------CCceEEehhh-chhhh---------------h
Confidence 66666666665554333 567999999988777777765 7899987321 11111 1
Q ss_pred HhcCCCcccccccccccccccccCCCeEEEecCCCCC-cchHHHHHHHHcCCCCCeEEEeccCCCCCcccccccCCc-ee
Q psy8348 285 ISINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQ-SGLSRELFEMWCTDAKNGVIIAGYCVEGTLAKTILSEPE-EV 362 (622)
Q Consensus 285 ~~~~npf~f~~i~~l~~~~~~~~~~p~Vvias~gml~-~G~s~~~l~~~~~d~~n~vil~gy~~~gt~~~~l~~~~~-~~ 362 (622)
+...+++. ... .+..+-+|-+++-..++ .-...++..+. .+.. -.+.|+...|+.-+.+++.-+ ..
T Consensus 302 lg~~d~~~--~~s-------~d~~~ssvhv~~~~~l~~~~~l~~~~~~~-~~~~--s~~v~~~~tgwt~~~~~s~~~~~~ 369 (481)
T KOG1361|consen 302 LGFDDESK--LLS-------IDVDESSVHVVPMNSLASSPSLKEYESQY-EDGY--SKLVGFSPTGWTKGKLVSLDKENS 369 (481)
T ss_pred cCCCChhh--hhc-------cccccCceeEeehhhhccccchhhhhccc-ccCc--ceeEeecccccccccccccCcccc
Confidence 11111110 000 01123344444322222 11122222111 1111 234566666665444443211 11
Q ss_pred eeccCeEeeceeeEEEEecccCCCHHHHHHHHHHhCCCeEEEEcCChH
Q psy8348 363 IGMSGQRLPLKMSVDYISFSAHTDYQQTSEFVRELRPAHVVLVHGEQN 410 (622)
Q Consensus 363 ~~~~g~~i~~~~~v~~i~fS~Had~~el~~~i~~l~P~~VilvHGe~~ 410 (622)
....|+ ++.+..+++|.|+.|.++.+|++.+||+.||++-++..
T Consensus 370 ~~~~~~----~i~~~~vpYseHSs~~el~~f~~~lk~k~iiptv~~~~ 413 (481)
T KOG1361|consen 370 RPQSGS----KIPISLVPYSEHSSYTELSEFLSKLKPKTIIPTVNEDT 413 (481)
T ss_pred cccccc----ccccccccccccCCHHHHHHHHHhcCCCeeecCccCCc
Confidence 112222 45566789999999999999999999999999999877
No 13
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.77 E-value=5.3e-18 Score=172.47 Aligned_cols=155 Identities=16% Similarity=0.277 Sum_probs=111.2
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhHHHH
Q psy8348 12 GRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIY 91 (622)
Q Consensus 12 G~sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~~i~ 91 (622)
.++|++|+.++..||||||... +. ..+++.+||+|||||.|.||++|++.+........+||++..+..+.
T Consensus 36 ~~~s~li~~~~~~iLiD~G~~~----~~-----~~~~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~~ 106 (250)
T PRK11244 36 RPCSALIEFNGARTLIDAGLPD----LA-----ERFPPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGCD 106 (250)
T ss_pred ceeEEEEEECCCEEEEECCChH----Hh-----hcCCcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhhHH
Confidence 3579999999999999999521 11 12356799999999999999999987754333456899988765322
Q ss_pred HHHHHhHHhhhcccccccCCCHHHHHHhhccc-EEecCCCeEEeCCEEEEEEeCCCCCCcEEEEEEECCEEEEEEcCCCC
Q psy8348 92 RWLLSDYIKVSNISTEQMLYTESDLEKSMDKI-ETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDFSR 170 (622)
Q Consensus 92 ~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i-~~i~~~~~~~i~gi~v~~~~aGH~~Gs~~~~I~~~~~~IlytGD~~~ 170 (622)
.. .+.. .. ..+ ..+..++.+++++++++++++.|+.++.+|+|+.++++++|+||+..
T Consensus 107 ~~-----~~~~------------~~----~~~~~~l~~~~~~~~~~~~I~~~~~~H~~~s~g~~i~~~~~~i~ysgDt~~ 165 (250)
T PRK11244 107 DL-----FKHP------------GI----LDFSHPLEPFEPFDLGGLQVTPLPLNHSKLTFGYLLETAHSRVAYLTDTVG 165 (250)
T ss_pred HH-----hcCc------------cc----cccccccCCCCCeeECCEEEEEEeeCCCcceeEEEEecCCeEEEEEcCCCC
Confidence 11 1100 00 011 23556788899999999999999999999999999999999999975
Q ss_pred CccccccccCCCCCCCcEEEEcccCCCC
Q psy8348 171 QEDRHLMAAEIPPVKPDILITESTYGTH 198 (622)
Q Consensus 171 ~~~~~l~~a~~~~~~~DvLI~EsTyg~~ 198 (622)
.++..... +...++|+||+|+||...
T Consensus 166 ~~~~~~~~--~~~~~~Dlli~e~~~~~~ 191 (250)
T PRK11244 166 LPEDTLKF--LRNNQPDLLVLDCSHPPQ 191 (250)
T ss_pred CCHHHHHH--HhcCCCCEEEEeCcCCCC
Confidence 43322111 112379999999998643
No 14
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.77 E-value=4.2e-18 Score=177.72 Aligned_cols=173 Identities=25% Similarity=0.290 Sum_probs=122.4
Q ss_pred CcEecCCCCC-----CCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhc
Q psy8348 1 MKTLKGAGQE-----VGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKT 75 (622)
Q Consensus 1 ~v~~LG~g~e-----vG~sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~ 75 (622)
.|++||.|+. .+.+|++|+.++..+|||||.. . ...+.. ..++..++|+|||||.|.||++|++.++...
T Consensus 1 ~~~~lGtg~~~p~~~r~~~~~~v~~~~~~iLiD~G~g--~--~~~l~~-~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~ 75 (299)
T TIGR02651 1 EITFLGTGGGVPTKERNLPSIALKLNGELWLFDCGEG--T--QRQMLR-SGISPMKIDRIFITHLHGDHILGLPGLLSTM 75 (299)
T ss_pred CEEEEeCCCCCCCCCCCCceEEEEECCeEEEEECCHH--H--HHHHHH-cCCCHHHCcEEEEECCchhhhcChHHHHHhh
Confidence 3789999885 4669999999999999999942 1 011100 1235568999999999999999999887543
Q ss_pred CC-----CCeEEechhhHHHHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCC-eEEeCCEEEEEEeCCCCCC
Q psy8348 76 GF-----KGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHE-EKDVNGIKFSAYNAGHVLG 149 (622)
Q Consensus 76 ~~-----~~~Iy~t~~t~~i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~-~~~i~gi~v~~~~aGH~~G 149 (622)
.+ ..+||++..+.+.++..+..+.. ...|. -.+..+..++ .+..+++++++++.-|...
T Consensus 76 ~~~~~~~~i~Iy~p~~~~~~l~~~~~~~~~-------~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~~~~H~~~ 140 (299)
T TIGR02651 76 SFQGRKEPLTIYGPPGIKEFIETSLRVSYT-------YLNYP--------IKIHEIEEGGLVFEDDGFKVEAFPLDHSIP 140 (299)
T ss_pred ccCCCCceEEEECCccHHHHHHHHHHHccc-------CCCce--------EEEEEccCCCceEecCCEEEEEEEcCCCCc
Confidence 22 35699999887765443221100 00010 1234556666 5788999999999999989
Q ss_pred cEEEEEEEC--------------------------------------------------CEEEEEEcCCCCCcccccccc
Q psy8348 150 AAMFLIEIA--------------------------------------------------GVKILYTGDFSRQEDRHLMAA 179 (622)
Q Consensus 150 s~~~~I~~~--------------------------------------------------~~~IlytGD~~~~~~~~l~~a 179 (622)
+.+|.|+.+ +.+++|+||+...+... ..
T Consensus 141 ~~gy~i~~~~~~~~~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~~~~~-~~- 218 (299)
T TIGR02651 141 SLGYRFEEKDRPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPCEEVI-EF- 218 (299)
T ss_pred eEEEEEEECCCCCCcCHHHHHHCCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCCcEEEEecCCCChHHHH-HH-
Confidence 999999864 46899999998754321 11
Q ss_pred CCCCCCCcEEEEcccCCCC
Q psy8348 180 EIPPVKPDILITESTYGTH 198 (622)
Q Consensus 180 ~~~~~~~DvLI~EsTyg~~ 198 (622)
..++|+||+||||...
T Consensus 219 ---~~~~dlLi~E~~~~~~ 234 (299)
T TIGR02651 219 ---AKNADLLIHEATFLDE 234 (299)
T ss_pred ---HcCCCEEEEECCCCch
Confidence 1379999999999864
No 15
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.75 E-value=6.2e-18 Score=176.81 Aligned_cols=172 Identities=22% Similarity=0.213 Sum_probs=120.4
Q ss_pred cEecCCCCCC-----CCcEEEEEEC----CeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHH
Q psy8348 2 KTLKGAGQEV-----GRSCIMLEFK----NKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFL 72 (622)
Q Consensus 2 v~~LG~g~ev-----G~sc~lI~~~----~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~ 72 (622)
|++||.|+.+ +.+|++++.+ +.++|||||.. . ...+. ...+++.+||+|||||.|.||++|+|.++
T Consensus 1 ~~~LGt~~~~p~~~r~~s~~lv~~~~~~~~~~iLiD~G~g--~--~~~l~-~~~i~~~~id~IfiTH~H~DHi~Gl~~ll 75 (303)
T TIGR02649 1 LIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEG--T--QHQLL-HTAFNPGKLDKIFISHLHGDHLFGLPGLL 75 (303)
T ss_pred CEEEecCCCCCCCCCCccEEEEEccCCCCCCEEEEECCcc--H--HHHHH-HhCCCHHHCcEEEEeCCChhhcCCHHHHH
Confidence 5789998754 5689999974 37899999952 1 11111 11346689999999999999999999876
Q ss_pred HhcC-----CCCeEEechhhHHHHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEEeCCCC
Q psy8348 73 LKTG-----FKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHV 147 (622)
Q Consensus 73 ~~~~-----~~~~Iy~t~~t~~i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~~aGH~ 147 (622)
.... .+.+||+++.+.+.++..+.-. .. + ..|. -.+..+..++.++.++++|++++..|.
T Consensus 76 ~~~~~~~~~~~l~Iygp~~~~~~l~~~~~~~----~~--~-~~~~--------~~~~~i~~~~~~~~~~~~v~~~~~~H~ 140 (303)
T TIGR02649 76 CSRSMSGIIQPLTIYGPQGIREFVETALRIS----GS--W-TDYP--------LEIVEIGAGEILDDGLRKVTAYPLEHP 140 (303)
T ss_pred HHHHhcCCCCCeEEEechhHHHHHHHHHHhc----cc--c-cCCc--------eEEEEcCCCceEecCCeEEEEEEccCc
Confidence 4321 2357999998877665433210 00 0 0010 134556667777778899999999999
Q ss_pred CCcEEEEEEE--------------------------------------------------CCEEEEEEcCCCCCcccccc
Q psy8348 148 LGAAMFLIEI--------------------------------------------------AGVKILYTGDFSRQEDRHLM 177 (622)
Q Consensus 148 ~Gs~~~~I~~--------------------------------------------------~~~~IlytGD~~~~~~~~l~ 177 (622)
..+.+|.|+. ++.+++|+||+...+... .
T Consensus 141 ~~~~gy~i~~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~~~~~~-~ 219 (303)
T TIGR02649 141 LECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDAAL-D 219 (303)
T ss_pred cceEEEEEeccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcEEEEecCCCChHHHH-H
Confidence 9999999986 457899999998743321 1
Q ss_pred ccCCCCCCCcEEEEcccCCCC
Q psy8348 178 AAEIPPVKPDILITESTYGTH 198 (622)
Q Consensus 178 ~a~~~~~~~DvLI~EsTyg~~ 198 (622)
. ..++|+||+||||...
T Consensus 220 ~----~~~adlLi~Eat~~~~ 236 (303)
T TIGR02649 220 L----AKGVDVMVHEATLDIT 236 (303)
T ss_pred H----hcCCCEEEEeccCChh
Confidence 1 2389999999999653
No 16
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.74 E-value=4.1e-17 Score=164.70 Aligned_cols=158 Identities=16% Similarity=0.252 Sum_probs=113.1
Q ss_pred CCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhHH
Q psy8348 10 EVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKA 89 (622)
Q Consensus 10 evG~sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~~ 89 (622)
...++|++|+.++..||||||... +. ..++..+||+|||||.|.||++|++.+......+.+||+++.+..
T Consensus 24 ~r~~~s~~i~~~~~~iliD~G~~~----~~-----~~~~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~ 94 (238)
T TIGR03307 24 RRQPCSAVIEFNGARTLIDAGLTD----LA-----ERFPPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEG 94 (238)
T ss_pred cCcceEEEEEECCcEEEEECCChh----Hh-----hccCccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhh
Confidence 456789999999999999999521 11 123567899999999999999999876554444678999987753
Q ss_pred HHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEEeCCCCCCcEEEEEEECCEEEEEEcCCC
Q psy8348 90 IYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDFS 169 (622)
Q Consensus 90 i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~~aGH~~Gs~~~~I~~~~~~IlytGD~~ 169 (622)
+... .+... + ......+..++.+++++++|+++++.|..++.+|.|+.++++++|+||+.
T Consensus 95 ~~~~-----~~~~~------------~---~~~~~~~~~~~~~~~~~~~i~~~~~~H~~~~~g~~i~~~~~~i~y~gDt~ 154 (238)
T TIGR03307 95 CDDL-----FKHPG------------I---LDFSKPLEAFEPFDLGGLRVTPLPLVHSKLTFGYLLETDGQRVAYLTDTA 154 (238)
T ss_pred HHHH-----hcCcc------------c---ccccccccCCceEEECCEEEEEEecCCCCcceEEEEecCCcEEEEEecCC
Confidence 2211 11000 0 00012356678899999999999999999999999999999999999997
Q ss_pred CCccccccccCCCCCCCcEEEEcccCCCC
Q psy8348 170 RQEDRHLMAAEIPPVKPDILITESTYGTH 198 (622)
Q Consensus 170 ~~~~~~l~~a~~~~~~~DvLI~EsTyg~~ 198 (622)
...+..... +...++|+||+|++|...
T Consensus 155 ~~~~~~~~~--~~~~~~D~li~e~~~~~~ 181 (238)
T TIGR03307 155 GLPPDTEAF--LKNHPLDVLILDCSHPPQ 181 (238)
T ss_pred CCCHHHHHH--HhcCCCCEEEEeCCcCcc
Confidence 543322111 112379999999998643
No 17
>PRK00055 ribonuclease Z; Reviewed
Probab=99.66 E-value=4.4e-16 Score=159.75 Aligned_cols=180 Identities=21% Similarity=0.241 Sum_probs=108.9
Q ss_pred cEecCCCCCC-----CCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcC
Q psy8348 2 KTLKGAGQEV-----GRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTG 76 (622)
Q Consensus 2 v~~LG~g~ev-----G~sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~ 76 (622)
|++||+|+.. +++|++|+.++..+|||||.... ..+ ....+++.+||+|||||.|.||++||+.++....
T Consensus 4 i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~G~g~~----~~l-~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~ 78 (270)
T PRK00055 4 LTFLGTGSGVPTPTRNVSSILLRLGGELFLFDCGEGTQ----RQL-LKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRS 78 (270)
T ss_pred EEEEecCCCCCcCCCCCCEEEEEECCcEEEEECCHHHH----HHH-HHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhh
Confidence 7899999864 58999999999999999995211 011 0112466789999999999999999998875431
Q ss_pred -----CCCeEEechhhHHHHHHHHHhHHhhh-c--ccccccCCCHHHHHHhhcccEEecCCCeE-Ee-CCEEEEEEeCCC
Q psy8348 77 -----FKGRCFMTHATKAIYRWLLSDYIKVS-N--ISTEQMLYTESDLEKSMDKIETINFHEEK-DV-NGIKFSAYNAGH 146 (622)
Q Consensus 77 -----~~~~Iy~t~~t~~i~~~~l~d~~~~~-~--~~~~~~ly~~~di~~~~~~i~~i~~~~~~-~i-~gi~v~~~~aGH 146 (622)
...+||+++.+.+.++..+..+.... . .......|....... ..+..+..+ ++ .|.++.. .+|
T Consensus 79 ~~~~~~~l~iy~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~--~~~ 151 (270)
T PRK00055 79 LSGRTEPLTIYGPKGIKEFVETLLRASGSLGYRIAEKDKPGKLDAEKLKA-----LGVPPGPLFGKLKRGEDVTL--EDG 151 (270)
T ss_pred hcCCCceEEEECCccHHHHHHHHHHHhhceeEEEEEcCCCCCCCHHHHHH-----CCCCCCchHHHhhCCCeEEe--CCC
Confidence 23569999888876654432211000 0 000001222221110 000001000 01 1223322 233
Q ss_pred C--CCcEEEEEEECCEEEEEEcCCCCCccccccccCCCCCCCcEEEEcccCCCC
Q psy8348 147 V--LGAAMFLIEIAGVKILYTGDFSRQEDRHLMAAEIPPVKPDILITESTYGTH 198 (622)
Q Consensus 147 ~--~Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~a~~~~~~~DvLI~EsTyg~~ 198 (622)
. .++.+|.++.++.+++|+||+...+.... . ..++|+||+||||...
T Consensus 152 ~~i~~~~~~~~~~~g~~~~y~~Dt~~~~~~~~----~-~~~~d~li~E~~~~~~ 200 (270)
T PRK00055 152 RIINPADVLGPPRKGRKVAYCGDTRPCEALVE----L-AKGADLLVHEATFGDE 200 (270)
T ss_pred cEEeHHHeeccCCCCcEEEEeCCCCCcHHHHH----H-hCCCCEEEEeccCCcc
Confidence 3 36778888889999999999987543211 1 1379999999999765
No 18
>PRK02113 putative hydrolase; Provisional
Probab=99.65 E-value=1.5e-15 Score=154.71 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=107.5
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhc-CCCCeEEechhhHHH
Q psy8348 12 GRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKT-GFKGRCFMTHATKAI 90 (622)
Q Consensus 12 G~sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~-~~~~~Iy~t~~t~~i 90 (622)
.++|++|+.++..||||||. +.. ..+. . .+..++|+|||||.|.||++|++.+.... ..+.+||+++.+.+.
T Consensus 34 ~~~s~li~~~~~~iLiD~G~--g~~--~~l~--~-~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~ 106 (252)
T PRK02113 34 LRTSALVETEGARILIDCGP--DFR--EQML--R-LPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAER 106 (252)
T ss_pred eeeEEEEEECCeEEEEECCc--hHH--HHHH--h-cCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHH
Confidence 34789999999999999995 211 1111 1 24578999999999999999999875321 235789999887665
Q ss_pred HHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEEeCCCC-CCcEEEEEEECCEEEEEEcCCC
Q psy8348 91 YRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHV-LGAAMFLIEIAGVKILYTGDFS 169 (622)
Q Consensus 91 ~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~~aGH~-~Gs~~~~I~~~~~~IlytGD~~ 169 (622)
++........ ...|. ++. ..++..++.++.++++|++|++++..|. ..+++|.+ ++++|+||+.
T Consensus 107 l~~~~~~~~~-------~~~~~--~~~--~~~~~~~~~g~~~~~~~~~i~~~~~~H~~~~~~gy~i----~~i~y~~Dt~ 171 (252)
T PRK02113 107 LRSRMPYCFV-------EHSYP--GVP--NIPLREIEPDRPFLVNHTEVTPLRVMHGKLPILGYRI----GKMAYITDML 171 (252)
T ss_pred HHhhCCeeec-------cCCCC--CCc--ceeeEEcCCCCCEEECCeEEEEEEecCCCccEEEEEe----CCEEEccCCC
Confidence 5432111000 00011 000 0245677788899999999999999997 45788888 4799999997
Q ss_pred CCccccccccCCCCCCCcEEEEcccC
Q psy8348 170 RQEDRHLMAAEIPPVKPDILITESTY 195 (622)
Q Consensus 170 ~~~~~~l~~a~~~~~~~DvLI~EsTy 195 (622)
..++..... ..++|+||+|+++
T Consensus 172 ~~~~~~~~~----~~~~DlLi~e~~~ 193 (252)
T PRK02113 172 TMPEEEYEQ----LQGIDVLVMNALR 193 (252)
T ss_pred CCCHHHHHH----hcCCCEEEEhhhc
Confidence 544322211 2379999999986
No 19
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.61 E-value=5.6e-15 Score=154.08 Aligned_cols=165 Identities=15% Similarity=0.177 Sum_probs=108.3
Q ss_pred CCCCCcEEEEEECC-eEEEEeCCCCCCCC-CCCCCCCC---CCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEe
Q psy8348 9 QEVGRSCIMLEFKN-KSIMMDCGIHPGLS-GMDALPFV---DLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFM 83 (622)
Q Consensus 9 ~evG~sc~lI~~~~-~~ILiD~G~~~~~~-~~~~lp~~---~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~ 83 (622)
....++|++|+.++ .+||||||. +.. .+...+.. .+++..++|+|||||.|.||++||+.+.. +.+.+||+
T Consensus 35 ~~R~~ss~li~~~g~~~iLiD~G~--g~~~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~--~~~l~Vyg 110 (302)
T PRK05184 35 KPRTQSSIAVSADGEDWVLLNASP--DIRQQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLRE--GQPFPVYA 110 (302)
T ss_pred CcccccEEEEEcCCCEEEEEECCh--hHHHHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhcc--CCCeEEEe
Confidence 34556899998766 469999994 321 11111000 12355689999999999999999998743 45678999
Q ss_pred chhhHHHHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeC---CEEEEEEeCCC-------------C
Q psy8348 84 THATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVN---GIKFSAYNAGH-------------V 147 (622)
Q Consensus 84 t~~t~~i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~---gi~v~~~~aGH-------------~ 147 (622)
++.+.+.++.... +.... ..| .. -.+..+..++.++++ |++|++++..| .
T Consensus 111 ~~~~~~~l~~~~~-~f~~~------~~~------~~-~~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~ 176 (302)
T PRK05184 111 TPAVLEDLSTGFP-IFNVL------DHY------GG-VQRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEP 176 (302)
T ss_pred CHHHHHHHHhcCC-ccccc------ccc------cc-eeeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCC
Confidence 9998776542111 11000 001 00 134556667778885 89999999865 3
Q ss_pred CCcEEEEEE--ECCEEEEEEcCCCCCccccccccCCCCCCCcEEEEcccC
Q psy8348 148 LGAAMFLIE--IAGVKILYTGDFSRQEDRHLMAAEIPPVKPDILITESTY 195 (622)
Q Consensus 148 ~Gs~~~~I~--~~~~~IlytGD~~~~~~~~l~~a~~~~~~~DvLI~EsTy 195 (622)
..+.+|.|+ .++++++|++|.....+..... ..++|+||+|+|+
T Consensus 177 ~~~~gyri~~~~~g~~~~y~tD~~~~~~~~~~~----~~gaDlli~da~~ 222 (302)
T PRK05184 177 GDNIGLRIEDRATGKRLFYAPGLAEVTDALRAR----LAGADCVLFDGTL 222 (302)
T ss_pred CCeEEEEEEecCCCcEEEEECCCCCCCHHHHHH----HhcCCEEEEeCCC
Confidence 568999995 7788999998875433322211 1379999999984
No 20
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.61 E-value=7.1e-15 Score=152.86 Aligned_cols=163 Identities=14% Similarity=0.164 Sum_probs=109.4
Q ss_pred CCCCcEEEEEE-CCeEEEEeCCCCCCCCCCCCCCC---CCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEech
Q psy8348 10 EVGRSCIMLEF-KNKSIMMDCGIHPGLSGMDALPF---VDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTH 85 (622)
Q Consensus 10 evG~sc~lI~~-~~~~ILiD~G~~~~~~~~~~lp~---~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~ 85 (622)
...++|++|+. ++.+||||||..... .+..+.. ..+++..+||+||+||.|.||++||+.+.. ....+||+++
T Consensus 35 ~R~rss~ll~~~g~~~iLID~Gpd~r~-ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~--~~~lpVya~~ 111 (302)
T TIGR02108 35 ARTQSSIAVSADGERWVLLNASPDIRQ-QIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLRE--GQPFTLYATE 111 (302)
T ss_pred cccccEEEEEeCCCEEEEEECCHHHHH-HHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcC--CCCceEEECH
Confidence 44568899976 556999999953111 1111111 124567899999999999999999999853 3578999999
Q ss_pred hhHHHHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeC-----CEEEEEEeCC--------C------
Q psy8348 86 ATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVN-----GIKFSAYNAG--------H------ 146 (622)
Q Consensus 86 ~t~~i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~-----gi~v~~~~aG--------H------ 146 (622)
.|.+.++.. . .|.. +....-+...+..++.+.++ |++|++++.. |
T Consensus 112 ~t~~~L~~~-~-------------~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~ 175 (302)
T TIGR02108 112 MVLQDLSDN-P-------------IFNV--LDHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPH 175 (302)
T ss_pred HHHHHHHhC-C-------------Cccc--cchhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCC
Confidence 988765321 0 0110 00000123455666777653 5999999998 4
Q ss_pred CCCcEEEEEEEC--CEEEEEEcCCCCCccccccccCCCCCCCcEEEEcccC
Q psy8348 147 VLGAAMFLIEIA--GVKILYTGDFSRQEDRHLMAAEIPPVKPDILITESTY 195 (622)
Q Consensus 147 ~~Gs~~~~I~~~--~~~IlytGD~~~~~~~~l~~a~~~~~~~DvLI~EsTy 195 (622)
...+++|.|+.+ +++++|++|+....+..... ..++|+||+|++|
T Consensus 176 ~~~~~Gy~i~~~~~g~~~~y~tD~g~~~~~~~~~----l~~~d~liida~~ 222 (302)
T TIGR02108 176 PGDTLGLKIEDGTTGKRLFYIPGCAEITDDLKAR----MAGADLVFFDGTL 222 (302)
T ss_pred CCCcEEEEEEeCCCCcEEEEECCCCCCCHHHHHH----HhCCCEEEEeCCC
Confidence 136889999988 89999999997544332211 1368999999995
No 21
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.61 E-value=2.5e-15 Score=143.91 Aligned_cols=146 Identities=24% Similarity=0.315 Sum_probs=101.8
Q ss_pred CCCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhH
Q psy8348 9 QEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATK 88 (622)
Q Consensus 9 ~evG~sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~ 88 (622)
.+.++||++|+.++..+|||||..... ..+..+......++|+|++||.|.||++|++.+... ++.++|++..+.
T Consensus 2 ~~~~~~~~li~~~~~~iliD~g~~~~~---~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~--~~~~i~~~~~~~ 76 (183)
T smart00849 2 GGVGVNSYLVEGDGGAILIDTGPGEAE---DLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEA--PGAPVYAPEGTA 76 (183)
T ss_pred CccceeEEEEEeCCceEEEeCCCChhH---HHHHHHHHcCchhhcEEEecccCcchhccHHHHHhC--CCCcEEEchhhh
Confidence 467789999999999999999953211 111112223467999999999999999999998776 678899988777
Q ss_pred HHHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEEeC-CCCCCcEEEEEEECCEEEEEEcC
Q psy8348 89 AIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNA-GHVLGAAMFLIEIAGVKILYTGD 167 (622)
Q Consensus 89 ~i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~~a-GH~~Gs~~~~I~~~~~~IlytGD 167 (622)
..++...... +...........+..+..++++.+++.+++++++ ||++|++++.++ +.+++|+||
T Consensus 77 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~--~~~vl~~gD 142 (183)
T smart00849 77 ELLKDLLKLG------------GALGAEAPPPPPDRTLKDGEELDLGGLELEVIHTPGHTPGSIVLYLP--EGKILFTGD 142 (183)
T ss_pred HHHhccchhc------------cccCcCCCCCccceecCCCCEEEeCCceEEEEECCCCCCCcEEEEEC--CCCEEEECC
Confidence 6554221110 0000111112245667888999998777776655 899999987775 589999999
Q ss_pred CCCCcc
Q psy8348 168 FSRQED 173 (622)
Q Consensus 168 ~~~~~~ 173 (622)
+.....
T Consensus 143 ~~~~~~ 148 (183)
T smart00849 143 LLFSGG 148 (183)
T ss_pred eeeccC
Confidence 986544
No 22
>PRK02126 ribonuclease Z; Provisional
Probab=99.59 E-value=3.8e-14 Score=149.37 Aligned_cols=177 Identities=19% Similarity=0.210 Sum_probs=113.6
Q ss_pred CCCcEEEEEEC--CeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcC---CCCeEEech
Q psy8348 11 VGRSCIMLEFK--NKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTG---FKGRCFMTH 85 (622)
Q Consensus 11 vG~sc~lI~~~--~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~---~~~~Iy~t~ 85 (622)
...||+++..+ +..+|||||. ...+. ..+..+|++||+||.|.||++|++.|+.... ...+||+++
T Consensus 14 ~~dn~~~l~~~~~~~~iLiD~G~------~~~l~---~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~ 84 (334)
T PRK02126 14 FDDPGLYVDFLFERRALLFDLGD------LHHLP---PRELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPP 84 (334)
T ss_pred CCCcEEEEEECCCCeEEEEcCCC------HHHHh---hcCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECH
Confidence 35689999864 7899999994 11111 1256789999999999999999999976531 235899999
Q ss_pred hhHHHHHHHHHhHHhhhcccccccCCCHH--HH-----HH-----------hhcccEEecCCCeEEeCCEEEEEEeCCCC
Q psy8348 86 ATKAIYRWLLSDYIKVSNISTEQMLYTES--DL-----EK-----------SMDKIETINFHEEKDVNGIKFSAYNAGHV 147 (622)
Q Consensus 86 ~t~~i~~~~l~d~~~~~~~~~~~~ly~~~--di-----~~-----------~~~~i~~i~~~~~~~i~gi~v~~~~aGH~ 147 (622)
.+...++..+..+..... ....+-|... .+ .. ..........+..++.++++|++++.-|.
T Consensus 85 ~~~~~l~~~~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~a~~~~H~ 163 (334)
T PRK02126 85 GFADQVEHKLAGYTWNLV-ENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEPWFRVRAAFLDHG 163 (334)
T ss_pred HHHHHHHHHhccccccCc-ccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCCCEEEEEEEccCC
Confidence 999988766542210000 0000001100 00 00 00000111233345668999999999999
Q ss_pred CCcEEEEEEE-------------------------------------------------------------------CCE
Q psy8348 148 LGAAMFLIEI-------------------------------------------------------------------AGV 160 (622)
Q Consensus 148 ~Gs~~~~I~~-------------------------------------------------------------------~~~ 160 (622)
..+.+|.|+. ++.
T Consensus 164 vp~~gy~~~e~~~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~ 243 (334)
T PRK02126 164 IPCLAFALEEKAHINIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGGEHERVRPLGELKERVLRIEPGQ 243 (334)
T ss_pred CceeEEEEEecCCcCcCHHHHHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCccceeEecHHHHHHHhccCCCCC
Confidence 9999999984 356
Q ss_pred EEEEEcCCCCCccccccccCCCCCCCcEEEEcccCCCC
Q psy8348 161 KILYTGDFSRQEDRHLMAAEIPPVKPDILITESTYGTH 198 (622)
Q Consensus 161 ~IlytGD~~~~~~~~l~~a~~~~~~~DvLI~EsTyg~~ 198 (622)
+++|+||+...++.......+ ..++|+||+|+||...
T Consensus 244 ~v~y~gDT~~~~~~~~~l~~~-a~~aDlLI~Eat~~~~ 280 (334)
T PRK02126 244 KIGYVTDIGYTEENLARIVEL-AAGVDLLFIEAVFLDE 280 (334)
T ss_pred EEEEECCCCCCcccHHHHHHH-HcCCCEEEEEcccChH
Confidence 899999999766421101111 1389999999999754
No 23
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.58 E-value=4.5e-15 Score=144.27 Aligned_cols=154 Identities=27% Similarity=0.381 Sum_probs=103.0
Q ss_pred eEEEEeCCCCCCCC-CCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcC-CCCeEEechhhHHHHHHHHHhHHh
Q psy8348 23 KSIMMDCGIHPGLS-GMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTG-FKGRCFMTHATKAIYRWLLSDYIK 100 (622)
Q Consensus 23 ~~ILiD~G~~~~~~-~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~-~~~~Iy~t~~t~~i~~~~l~d~~~ 100 (622)
.+||||||.... + .+...+.....+..++|+|||||.|.||+.|++.+..... ...+||+++.+.+.++.......
T Consensus 1 ~~iLiD~g~~~~-~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~~~~- 78 (194)
T PF12706_consen 1 HRILIDCGPGTR-SLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLREYKFGIL- 78 (194)
T ss_dssp SEEEESE-TTHH-HHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHHHHHHTHH-
T ss_pred CEEEEeCCCCcc-cccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHHhhhcccc-
Confidence 379999996321 0 1110111111122499999999999999999888765431 12289999998887763200000
Q ss_pred hhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEEeCCCCCCcEE----EEEEECCEEEEEEcCCCCCccccc
Q psy8348 101 VSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAM----FLIEIAGVKILYTGDFSRQEDRHL 176 (622)
Q Consensus 101 ~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~~aGH~~Gs~~----~~I~~~~~~IlytGD~~~~~~~~l 176 (622)
..+... ....+..+..++.+++++++++++++.|..++++ |.|+.++.+++|+||+.. + +
T Consensus 79 --------~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~H~~~~~~~~~g~~i~~~~~~i~~~gD~~~--~--~ 142 (194)
T PF12706_consen 79 --------DLYPEE----DNFDIIEISPGDEFEIGDFRITPFPANHGPPSYGGNKGFVIEPDGKKIFYSGDTNY--D--F 142 (194)
T ss_dssp --------TTCCTT----SGEEEEEECTTEEEEETTEEEEEEEEESSSCCEEECCEEEEEETTEEEEEETSSSS--C--H
T ss_pred --------cccccc----cceeEEEeccCceEEeceEEEEEEeccccccccccCceEEEecCCcceEEeeccch--h--h
Confidence 001110 0124566777788999999999999999999888 999999999999999998 2 1
Q ss_pred cccCCCCCCCcEEEEcccCCCC
Q psy8348 177 MAAEIPPVKPDILITESTYGTH 198 (622)
Q Consensus 177 ~~a~~~~~~~DvLI~EsTyg~~ 198 (622)
..+ .++|++|+|+++...
T Consensus 143 --~~~--~~~D~li~~~~~~~~ 160 (194)
T PF12706_consen 143 --EEL--KNIDLLILECGYIDE 160 (194)
T ss_dssp --HHH--TTBSEEEEEBCBSSG
T ss_pred --hhh--ccCCEEEEeCCCcch
Confidence 122 479999999998853
No 24
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.57 E-value=1.8e-15 Score=156.62 Aligned_cols=185 Identities=22% Similarity=0.336 Sum_probs=111.6
Q ss_pred cEecCCCCC-----CCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcC
Q psy8348 2 KTLKGAGQE-----VGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTG 76 (622)
Q Consensus 2 v~~LG~g~e-----vG~sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~ 76 (622)
+++||.|+. ...++++++.++..+|||||- +.........+.+.+|++|||||.|.||+.|||.++....
T Consensus 4 i~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~DcGe-----Gt~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~ 78 (292)
T COG1234 4 ITFLGTGGAVPTKDRNVSSILLRLEGEKFLFDCGE-----GTQHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRS 78 (292)
T ss_pred EEEEecCCCCCcCccccceeEEEeCCeeEEEECCH-----hHHHHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhh
Confidence 689999886 567899999999999999994 2221111123456689999999999999999998776554
Q ss_pred CC-----CeEEechhhHHHHHHHHHhHHhhhccccc---c--cCCCH--HHHHHhhcccEEecCC--CeEEeC-------
Q psy8348 77 FK-----GRCFMTHATKAIYRWLLSDYIKVSNISTE---Q--MLYTE--SDLEKSMDKIETINFH--EEKDVN------- 135 (622)
Q Consensus 77 ~~-----~~Iy~t~~t~~i~~~~l~d~~~~~~~~~~---~--~ly~~--~di~~~~~~i~~i~~~--~~~~i~------- 135 (622)
+. ..||.+...++.....+.-.......... . ..|.. ..+. ..+....|. +....+
T Consensus 79 ~~~~~~~l~iygP~g~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~v~~~~~~---h~~~~~~y~~~e~~~~~~~~~~~~ 155 (292)
T COG1234 79 FRGRREPLKIYGPPGIKEFVETSLRLSYSKLTYEIIGHEIEEDAFEVEALELD---HGVPALGYRIEEPDRPGRFDAEKL 155 (292)
T ss_pred ccCCCCceeEECCcchhhhhhhhhhhcccccceEEEEEEeccCceEEEEEecC---CCccccceeeecCCCcCcCCHHHh
Confidence 42 36888887776655433211100000000 0 00000 0000 000000110 111111
Q ss_pred -----CEEEEEEeCCCC----CCcEEEEEEE--CCEEEEEEcCCCCCccccccccCCCCCCCcEEEEcccCCCCC
Q psy8348 136 -----GIKFSAYNAGHV----LGAAMFLIEI--AGVKILYTGDFSRQEDRHLMAAEIPPVKPDILITESTYGTHV 199 (622)
Q Consensus 136 -----gi~v~~~~aGH~----~Gs~~~~I~~--~~~~IlytGD~~~~~~~~l~~a~~~~~~~DvLI~EsTyg~~~ 199 (622)
|..++.+..+|+ .-...+.+.. .|.+|+|+||++..++....+ .++|+||+||||....
T Consensus 156 ~~~~~g~~~~~l~~~h~~~~~~~~~~~~~~~~~~G~~v~ysGDT~p~~~~~~~a-----~~aDlLiHEat~~~~~ 225 (292)
T COG1234 156 KGLPPGPLITALKAGHPVEERVITPADRIGEPRKGKSVVYSGDTRPCDELIDLA-----KGADLLIHEATFEDDL 225 (292)
T ss_pred cCCCCchHHHHHhCCCceeeeecCHHHhccccCCCcEEEEECCCCCCHHHHHHh-----cCCCEEEEeccCCchh
Confidence 567777888898 4444444443 457999999999877643322 4899999999997654
No 25
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.55 E-value=1.7e-13 Score=137.15 Aligned_cols=147 Identities=22% Similarity=0.249 Sum_probs=105.3
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhHHHH
Q psy8348 12 GRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIY 91 (622)
Q Consensus 12 G~sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~~i~ 91 (622)
|.+|++|+.++.+||+||+.... .. .+. . ....++|+||+||.|.||++++..+..+ .+.++|++..+.+.+
T Consensus 7 G~s~~li~~~~~~iLiDP~~~~~-~~---~~~-~-~~~~~id~vliTH~H~DH~~~~~~~~~~--~~~~v~~~~~~~~~~ 78 (228)
T PRK00685 7 GHSAFLIETGGKKILIDPFITGN-PL---ADL-K-PEDVKVDYILLTHGHGDHLGDTVEIAKR--TGATVIANAELANYL 78 (228)
T ss_pred cceEEEEEECCEEEEECCCCCCC-CC---CCC-C-hhcCcccEEEeCCCCccccccHHHHHHh--CCCEEEEeHHHHHHH
Confidence 36899999999999999875211 00 111 1 1223899999999999999998876543 467899987655433
Q ss_pred HHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEEeCCCCCC------------cEEEEEEECC
Q psy8348 92 RWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLG------------AAMFLIEIAG 159 (622)
Q Consensus 92 ~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~~aGH~~G------------s~~~~I~~~~ 159 (622)
+.. .+.++..++.++.+++++++|+++++-|... ..+|.|+.++
T Consensus 79 ~~~------------------------~~~~~~~~~~~~~~~~~~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~~~ 134 (228)
T PRK00685 79 SEK------------------------GVEKTHPMNIGGTVEFDGGKVKLTPALHSSSFIDEDGITYLGNPTGFVITFEG 134 (228)
T ss_pred Hhc------------------------CCCceeeccCCCcEEECCEEEEEEEEEcCCCCcCCCCcccCCCceEEEEEECC
Confidence 210 0114566778889999999999999989754 4899999999
Q ss_pred EEEEEEcCCCCCccccccccCCCCCCCcEEEEcc
Q psy8348 160 VKILYTGDFSRQEDRHLMAAEIPPVKPDILITES 193 (622)
Q Consensus 160 ~~IlytGD~~~~~~~~l~~a~~~~~~~DvLI~Es 193 (622)
.+++|+||+...++...... ..++|++++..
T Consensus 135 ~~i~~~GDt~~~~~~~~~~~---~~~~D~~~~~~ 165 (228)
T PRK00685 135 KTIYHAGDTGLFSDMKLIGE---LHKPDVALLPI 165 (228)
T ss_pred eEEEEecCccchhHHHHHHH---hhCCCEEEEec
Confidence 99999999987554322211 13679999864
No 26
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.49 E-value=3e-13 Score=146.52 Aligned_cols=130 Identities=17% Similarity=0.256 Sum_probs=93.2
Q ss_pred CCCcEEEEEECCeEEEEeCCCCCCCCCC-CCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhHH
Q psy8348 11 VGRSCIMLEFKNKSIMMDCGIHPGLSGM-DALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKA 89 (622)
Q Consensus 11 vG~sc~lI~~~~~~ILiD~G~~~~~~~~-~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~~ 89 (622)
...|||+|.. ++.+|||||..+....+ ..+ ...+++.+||+|++||.|.||+||++.+++.. .+.+||+++.+..
T Consensus 31 ~~~NsyLI~~-~~~vLIDtg~~~~~~~~~~~l--~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~-p~a~V~~~~~~~~ 106 (394)
T PRK11921 31 SSYNSYLIKD-EKTVLIDTVWQPFAKEFVENL--KKEIDLDKIDYIVANHGEIDHSGALPELMKEI-PDTPIYCTKNGAK 106 (394)
T ss_pred eEEEEEEEeC-CCEEEEeCCCCCcHHHHHHHH--HhhcCcccCCEEEeCCCCCchhhHHHHHHHHC-CCCEEEECHHHHH
Confidence 3468999974 67899999963211111 011 01235678999999999999999999987653 4689999988766
Q ss_pred HHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEEeC--CCCCCcEEEEEEECCEEEEEEcC
Q psy8348 90 IYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNA--GHVLGAAMFLIEIAGVKILYTGD 167 (622)
Q Consensus 90 i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~~a--GH~~Gs~~~~I~~~~~~IlytGD 167 (622)
.++.... . + .++..+..++.+++++.+++++++ .|++|+++++++ +.++|||||
T Consensus 107 ~l~~~~~----------------~-~-----~~~~~v~~g~~l~lG~~~l~~i~tP~~H~p~~~~~y~~--~~~vLFsgD 162 (394)
T PRK11921 107 SLKGHYH----------------Q-D-----WNFVVVKTGDRLEIGSNELIFIEAPMLHWPDSMFTYLT--GDNILFSND 162 (394)
T ss_pred HHHHHhC----------------C-C-----CceEEeCCCCEEeeCCeEEEEEeCCCCCCCCceEEEEc--CCCEEEecC
Confidence 5432100 0 0 124567888999999999988843 399999998875 668999999
Q ss_pred C
Q psy8348 168 F 168 (622)
Q Consensus 168 ~ 168 (622)
+
T Consensus 163 ~ 163 (394)
T PRK11921 163 A 163 (394)
T ss_pred c
Confidence 6
No 27
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.44 E-value=2.1e-13 Score=130.54 Aligned_cols=150 Identities=19% Similarity=0.242 Sum_probs=87.8
Q ss_pred CCCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhH
Q psy8348 9 QEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATK 88 (622)
Q Consensus 9 ~evG~sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~ 88 (622)
++.+.|||+|+.++..+|||||.......... +........+|++||+||+|.||+||++++.++.. ...+++.....
T Consensus 2 ~~~~~n~~li~~~~~~iliD~G~~~~~~~~~~-~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~-~~~~~~~~~~~ 79 (194)
T PF00753_consen 2 GEGGSNSYLIEGGDGAILIDTGLDPDFAKELE-LALLGISGEDIDAVILTHAHPDHIGGLPELLEAGP-VVIIYSSADAA 79 (194)
T ss_dssp SSEEEEEEEEEETTEEEEESEBSSHHHHHHHH-HHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTT-EEEEEEHHHHH
T ss_pred CCeeEEEEEEEECCEEEEEeCCCCchhhHHhh-hhHhhccCCCeEEEEECcccccccccccccccccc-eeeeecccccc
Confidence 35678999999999999999997432211100 01123467899999999999999999999888742 23333433333
Q ss_pred HHHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEEeCCCCCCcEEEEEEECCEEEEEEcCC
Q psy8348 89 AIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDF 168 (622)
Q Consensus 89 ~i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~~aGH~~Gs~~~~I~~~~~~IlytGD~ 168 (622)
............... ...................+........+|..++..+.+..++++++||||.
T Consensus 80 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlftGD~ 146 (194)
T PF00753_consen 80 KAIRPPDRDSASRRG-------------PAVPPPPIIDEDEDDLEIGGDRILFIIPGPGHGSDSLIIYLPGGKVLFTGDL 146 (194)
T ss_dssp HHHHHHHHHHHHHHH-------------HHHESEEEEEETTTEEEEETTEEEEEEESSSSSTTEEEEEETTTTEEEEETT
T ss_pred ccccccccccccccc-------------cccccccceeeecccccccccccccceeccccCCcceEEEeCCCcEEEeeeE
Confidence 332222111110000 0000112223333444443333333335666666666677789999999999
Q ss_pred CCCcc
Q psy8348 169 SRQED 173 (622)
Q Consensus 169 ~~~~~ 173 (622)
.....
T Consensus 147 ~~~~~ 151 (194)
T PF00753_consen 147 LFSNE 151 (194)
T ss_dssp SCTTT
T ss_pred eccCC
Confidence 87544
No 28
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.43 E-value=2.8e-12 Score=129.63 Aligned_cols=210 Identities=14% Similarity=0.071 Sum_probs=124.4
Q ss_pred ECCeEEEEe-CCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCC------CCeEEechhhHHHHH
Q psy8348 20 FKNKSIMMD-CGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGF------KGRCFMTHATKAIYR 92 (622)
Q Consensus 20 ~~~~~ILiD-~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~------~~~Iy~t~~t~~i~~ 92 (622)
+...+||+| +|- +.... -.-....++.+||||.|.||+|||+.+....+. ...||.++.+.+..+
T Consensus 16 ~~~~~ilfD~ag~-----g~~~~---l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ve 87 (277)
T TIGR02650 16 YSPEEIIFDAAEE-----GSSTL---GGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAEE 87 (277)
T ss_pred ECchhheehhhcc-----cchhH---HhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHHH
Confidence 467889999 884 21111 011345789999999999999999765542211 234999988887666
Q ss_pred HHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeC-C---EEEEEEeCCCCC---CcEEEEEEE--------
Q psy8348 93 WLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVN-G---IKFSAYNAGHVL---GAAMFLIEI-------- 157 (622)
Q Consensus 93 ~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~-g---i~v~~~~aGH~~---Gs~~~~I~~-------- 157 (622)
.++.-.-++.. +....-....++.++.+... + ..|.+++..|+. .|.+|.|..
T Consensus 88 ~~~~~~~~~~~------------~~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r~KLK~E 155 (277)
T TIGR02650 88 ETSEFIKAANE------------DLFFFFNHHLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEERRKKKEEE 155 (277)
T ss_pred HHHHHHHHhhh------------hhccCcccCCCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEEEeecchHh
Confidence 33322111110 00000122345555666565 3 789999999995 566666642
Q ss_pred ------------------------CCEEEEEEcCCCCCccccccccCCCCCCCcEEEEcccCCCCCCchhhhHHHHHHHH
Q psy8348 158 ------------------------AGVKILYTGDFSRQEDRHLMAAEIPPVKPDILITESTYGTHVHEQREEREGRFTSL 213 (622)
Q Consensus 158 ------------------------~~~~IlytGD~~~~~~~~l~~a~~~~~~~DvLI~EsTyg~~~~~~~~~~~~~~~~~ 213 (622)
...+++|+||+..... . ...++|+||+||||.+...... .......+.
T Consensus 156 ~~~l~~~eI~~l~~~gg~~~t~e~~~~~vvysGDT~~~~~---~----~a~~adlLIhEaTf~d~~~~~~-~gH~t~~ea 227 (277)
T TIGR02650 156 FGGDDKKEARLLKEEGGDDFTREEHHKILLIIGDDLAADD---E----EEEGGEELIHECCFFDDADDRR-KKHAAADDE 227 (277)
T ss_pred HcCCCHHHHHHHHHhCCccccccccCcEEEEeCCCCCCCh---H----HhcCCCEEEEeccccccccccc-CCCCCHHHH
Confidence 1368999999987642 1 1248999999999977643210 000112222
Q ss_pred HHHHH-HcCCeEEEeecccchHHHHH-HHHHHHHHhCCCCCCccEEEEC
Q psy8348 214 IHDIV-NRGGRCLIPVFALGRAQELL-LILDEYWSLHPELHDIPIYYAS 260 (622)
Q Consensus 214 i~~~l-~~gg~vliP~falGR~qEll-~iL~~~~~~~~~l~~ipI~~~s 260 (622)
+..+- ....+.++-.|+.-+-.+++ .+++.+-+ .++++||++.-
T Consensus 228 a~~A~~a~vk~LiLtH~Ssry~~~~~~~~~~~~~~---~~~~~~~~~~~ 273 (277)
T TIGR02650 228 MEESKKAAGKKKIILHHISRRIIRILKSIIKKREE---EMDDEEILMDD 273 (277)
T ss_pred HHHHHHcCCCEEEEEeecccccHHHHHHHHHHHHh---hcCccceeccC
Confidence 22222 24567788888876666665 44444422 34568888754
No 29
>PRK04286 hypothetical protein; Provisional
Probab=99.43 E-value=3.4e-12 Score=133.00 Aligned_cols=183 Identities=15% Similarity=0.133 Sum_probs=102.6
Q ss_pred cEecCCCC-CCCCcEEEEEECCeEEEEeCCCCCCCC--CCCCCCCC----------CCCCCCCccEEEcCCCchhhhcch
Q psy8348 2 KTLKGAGQ-EVGRSCIMLEFKNKSIMMDCGIHPGLS--GMDALPFV----------DLVESDQIDLLLISHFHLDHCGAL 68 (622)
Q Consensus 2 v~~LG~g~-evG~sc~lI~~~~~~ILiD~G~~~~~~--~~~~lp~~----------~~~~~~~Id~IlITH~H~DHiggL 68 (622)
+.+||++. ....||++|+.++.+||||+|...+.. +....|.. -.....+||+|||||.|.||++++
T Consensus 3 ~~~l~s~s~g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~ 82 (298)
T PRK04286 3 IIPLASESLGVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPF 82 (298)
T ss_pred EEEEEeCCCCceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCc
Confidence 56788854 223499999999999999999532111 11111110 012456899999999999999887
Q ss_pred HHHHHhc---CCCCeEEechhhHHHHH-HHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEE-e
Q psy8348 69 PWFLLKT---GFKGRCFMTHATKAIYR-WLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAY-N 143 (622)
Q Consensus 69 p~l~~~~---~~~~~Iy~t~~t~~i~~-~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~-~ 143 (622)
..++... .++.++|.+..+..-.. ..+ ++...... ..| ...+.. ......+..++.+.+++++|++. +
T Consensus 83 ~~~~y~~~~~~~~i~iy~~~~~~~~~~~~~~-~~~~~~~~----~~~-~~~v~~-~~~~~~~~~g~~~~ig~~~V~~~~~ 155 (298)
T PRK04286 83 YEDPYELSDEEIPKEIYKGKIVLIKDPTENI-NWSQRRRA----PRF-LKAVKD-IAKKIEYADGKTFRFGGTTIEFSPP 155 (298)
T ss_pred cccccccccccchHHHhcCceecccCHHHHc-CHHHHhhH----HhH-HHHHHh-cCCceEECCCCEEEECCEEEEEecc
Confidence 5532110 12245666544431000 000 00000000 000 011111 11224456678899999999966 6
Q ss_pred CCCCCC--cEE----EEEEECCEEEEEEcCCC-CCccccccccCCCCCCCcEEEEcc
Q psy8348 144 AGHVLG--AAM----FLIEIAGVKILYTGDFS-RQEDRHLMAAEIPPVKPDILITES 193 (622)
Q Consensus 144 aGH~~G--s~~----~~I~~~~~~IlytGD~~-~~~~~~l~~a~~~~~~~DvLI~Es 193 (622)
..|... +.+ +.|+.++.+++|+||+. ...+..... +...++|+|++++
T Consensus 156 v~H~~~~~~~Gy~i~~ri~~gg~~~~~~gDt~~~~~~~~~~~--l~~~d~dlLi~~~ 210 (298)
T PRK04286 156 VPHGADGSKLGYVIMVRISDGDESFVFASDVQGPLNDEAVEF--ILEKKPDVVIIGG 210 (298)
T ss_pred CCCCCCCCccceEEEEEEEeCCEEEEEECCCCCCCCHHHHHH--HhcCCCCEEEeCC
Confidence 788532 443 45678899999999998 322222111 1123899999987
No 30
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.29 E-value=7.5e-11 Score=125.05 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=102.1
Q ss_pred CCCcEEEEEE-CCeEEEEeC----CCC----C----C-----CCCC-CCCCCCCC-------CCCCCccEEEcCCCchhh
Q psy8348 11 VGRSCIMLEF-KNKSIMMDC----GIH----P----G-----LSGM-DALPFVDL-------VESDQIDLLLISHFHLDH 64 (622)
Q Consensus 11 vG~sc~lI~~-~~~~ILiD~----G~~----~----~-----~~~~-~~lp~~~~-------~~~~~Id~IlITH~H~DH 64 (622)
.|.++++|+. ++.+||+|. |.. + + ..+. ...|.... ....+||+|||||.|.||
T Consensus 43 lG~a~~li~~~~g~~ILiD~~~~~g~~~~~~~~~~~~~~~~~~~G~~~~~P~lr~~p~~idp~~i~~IDaVLiTH~H~DH 122 (355)
T PRK11709 43 LGCTGIWLKTEGGTNVCVDLWCGTGKQTHGNPLMKRGHQMARMAGVRKLQPNLRTQPFVLDPFAIREIDAVLATHDHSDH 122 (355)
T ss_pred ecceEEEEEcCCCcEEEEeecCCCCCccccccccccccchhhhccccccCCCCCCCCcccCHHHCCCCCEEEECCCcccc
Confidence 3788999998 688999994 210 0 0 0011 11122221 135689999999999999
Q ss_pred hc--chHHHHHhcCCCCeEEechhhHHHHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEE
Q psy8348 65 CG--ALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAY 142 (622)
Q Consensus 65 ig--gLp~l~~~~~~~~~Iy~t~~t~~i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~ 142 (622)
+. .+..+....+.+.+++++....++++.. . + ...++..++.++.+++++++|+++
T Consensus 123 lD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~~--------G------------v--p~~rv~~v~~Ge~i~ig~v~It~l 180 (355)
T PRK11709 123 IDVNVAAAVLQNCADHVKFIGPQACVDLWIGW--------G------------V--PKERCIVVKPGDVVKVKDIKIHAL 180 (355)
T ss_pred cChHHHHHHHhhcCCCcEEEEcHHHHHHHHhc--------C------------C--CcceEEEecCCCcEEECCEEEEEE
Confidence 94 3444444332346678877665543211 0 0 012567889999999999999999
Q ss_pred eCCC-----------CC-----------CcEEEEEEECCEEEEEEcCCCCCccccccccCCCCCCCcEEEEcc
Q psy8348 143 NAGH-----------VL-----------GAAMFLIEIAGVKILYTGDFSRQEDRHLMAAEIPPVKPDILITES 193 (622)
Q Consensus 143 ~aGH-----------~~-----------Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~a~~~~~~~DvLI~Es 193 (622)
++-| .. .+++|+|+.++.+++|+||+...+........ .++|++++..
T Consensus 181 pa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~sGDT~~~~~~~~i~~~---~~iDvall~i 250 (355)
T PRK11709 181 DSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYHSGDSHYSNYFAKHGND---HQIDVALGSY 250 (355)
T ss_pred eccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEeCCCCccHHHHHHHhc---CCCCEEEecC
Confidence 8843 21 25789999999999999999875432221221 2689999854
No 31
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.27 E-value=8.1e-12 Score=138.06 Aligned_cols=130 Identities=16% Similarity=0.215 Sum_probs=92.3
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCC-CCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhHHH
Q psy8348 12 GRSCIMLEFKNKSIMMDCGIHPGLSG-MDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAI 90 (622)
Q Consensus 12 G~sc~lI~~~~~~ILiD~G~~~~~~~-~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~~i 90 (622)
..|||||+ +++.+|||+|....... +..+. ..+++.+||+|++||.|.||+||++.++++. .+.+||+++.+...
T Consensus 34 t~NsYLI~-~~~~vLIDtg~~~~~~~~l~~l~--~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~-p~a~V~~s~~~~~~ 109 (479)
T PRK05452 34 SYNSYLIR-EEKNVLIDTVDHKFSREFVQNLR--NEIDLADIDYIVINHAEEDHAGALTELMAQI-PDTPIYCTANAIDS 109 (479)
T ss_pred EEEEEEEE-CCCEEEEeCCCcccHHHHHHHHH--hcCCHhhCCEEEeCCCCcchhchHHHHHHHC-CCCEEEECHHHHHH
Confidence 45999998 56889999994211100 11111 1235578999999999999999999988763 46899999888765
Q ss_pred HHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeC-CEEEEEEeC--CCCCCcEEEEEEECCEEEEEEcC
Q psy8348 91 YRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVN-GIKFSAYNA--GHVLGAAMFLIEIAGVKILYTGD 167 (622)
Q Consensus 91 ~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~-gi~v~~~~a--GH~~Gs~~~~I~~~~~~IlytGD 167 (622)
+..... .+ ..++..++.++.++++ +.+++++++ +|++|+.+++++ +.++|||||
T Consensus 110 l~~~~~-----------~~----------~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~~--~~~vLFsgD 166 (479)
T PRK05452 110 INGHHH-----------HP----------EWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLT--GDAVLFSND 166 (479)
T ss_pred HHHhhc-----------CC----------cCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEEc--CCCEEEecc
Confidence 421100 00 0135678889999998 467776655 599999999876 678999999
Q ss_pred C
Q psy8348 168 F 168 (622)
Q Consensus 168 ~ 168 (622)
+
T Consensus 167 ~ 167 (479)
T PRK05452 167 A 167 (479)
T ss_pred c
Confidence 6
No 32
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.27 E-value=7e-11 Score=121.22 Aligned_cols=192 Identities=18% Similarity=0.335 Sum_probs=132.1
Q ss_pred CcEEEEEECCeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhHHHHH
Q psy8348 13 RSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYR 92 (622)
Q Consensus 13 ~sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~~i~~ 92 (622)
+..++++.++.++++|+|.. ......+|++......+||.+++||.|.||+||++.+++...+ ..+|+..+...-..
T Consensus 54 g~a~li~~~~~~~l~dtg~~--~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v-~~~~i~~~~~~~~~ 130 (293)
T COG2333 54 GLATLIRSEGKTILYDTGNS--MGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKV-PELWIYAGSDSTST 130 (293)
T ss_pred CeEEEEeeCCceEEeecCcc--cCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCC-CcEEEeCCCCccch
Confidence 35788899999999999964 2234468998888999999999999999999999999886433 24555444322111
Q ss_pred HHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEEeC-CCCC-----CcEEEEEEECCEEEEEEc
Q psy8348 93 WLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNA-GHVL-----GAAMFLIEIAGVKILYTG 166 (622)
Q Consensus 93 ~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~~a-GH~~-----Gs~~~~I~~~~~~IlytG 166 (622)
.. +.+.........-++.+.++|+.++++.+ +..- -||++.++.++.++++||
T Consensus 131 ~~---------------------~~~~~~~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~s~LlTG 189 (293)
T COG2333 131 FV---------------------LRDAGIPVRSCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNSFLLTG 189 (293)
T ss_pred hh---------------------hhhcCCceeccccCceEEECCeEEEEEcCCccccccccCcceEEEEEeCCeeEEEec
Confidence 00 11111234556778889999999998733 3432 589999999999999999
Q ss_pred CCCCCccccccccCCCCCCCcEEEEcccCCCCCCchhhhHHHHHHHHHHHHHHcCCeEEEeecccch-------HHHHHH
Q psy8348 167 DFSRQEDRHLMAAEIPPVKPDILITESTYGTHVHEQREEREGRFTSLIHDIVNRGGRCLIPVFALGR-------AQELLL 239 (622)
Q Consensus 167 D~~~~~~~~l~~a~~~~~~~DvLI~EsTyg~~~~~~~~~~~~~~~~~i~~~l~~gg~vliP~falGR-------~qEll~ 239 (622)
|.....+ .+..+..+..++|+|..- .|-++......|.+.++- + ++..+.|| -++.+.
T Consensus 190 D~e~~~E-~~l~~~~~~l~~dVLkV~------HHGS~tSss~~Fl~~v~P------k--~AliS~G~~N~yghPh~~Vl~ 254 (293)
T COG2333 190 DLEEKGE-KLLKKYGPDLRADVLKVG------HHGSKTSSSLAFLEAVKP------K--VALISSGRNNRYGHPHQEVLE 254 (293)
T ss_pred CCCchhH-HHHHhhCCCccceEEEec------cCCccccCcHHHHHhcCC------c--EEEEEeeccCCCCCCcHHHHH
Confidence 9998777 444445555689999863 344444444566665532 2 35556676 467776
Q ss_pred HHHH
Q psy8348 240 ILDE 243 (622)
Q Consensus 240 iL~~ 243 (622)
-|.+
T Consensus 255 rl~~ 258 (293)
T COG2333 255 RLQK 258 (293)
T ss_pred HHHh
Confidence 6665
No 33
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.25 E-value=1.5e-11 Score=124.85 Aligned_cols=117 Identities=17% Similarity=0.303 Sum_probs=84.3
Q ss_pred cEEEEEECC-eEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhHHHHH
Q psy8348 14 SCIMLEFKN-KSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYR 92 (622)
Q Consensus 14 sc~lI~~~~-~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~~i~~ 92 (622)
.+|++..++ ..++||+|... ..+..+.... .++++|++||.|.||+||++.+.+.. +.+||++..+.
T Consensus 11 ~~yli~~~~~~~ilID~g~~~-----~i~~~l~~~g-~~l~~Il~TH~H~DHigG~~~l~~~~--~~~V~~~~~~~---- 78 (248)
T TIGR03413 11 YIWLLHDPDGQAAVVDPGEAE-----PVLDALEARG-LTLTAILLTHHHHDHVGGVAELLEAF--PAPVYGPAEER---- 78 (248)
T ss_pred EEEEEEcCCCCEEEEcCCChH-----HHHHHHHHcC-CeeeEEEeCCCCccccCCHHHHHHHC--CCeEEeccccc----
Confidence 567777654 79999999421 1111111122 26899999999999999999987663 47899886530
Q ss_pred HHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEEe-CCCCCCcEEEEEEECCEEEEEEcCCCC
Q psy8348 93 WLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYN-AGHVLGAAMFLIEIAGVKILYTGDFSR 170 (622)
Q Consensus 93 ~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~~-aGH~~Gs~~~~I~~~~~~IlytGD~~~ 170 (622)
+. .....+..++.+.+++.++++++ +||++|+++|+++ +.+++||||+-.
T Consensus 79 --------~~------------------~~~~~v~~g~~~~~g~~~i~v~~tpGHT~g~i~~~~~--~~~~lftGDtl~ 129 (248)
T TIGR03413 79 --------IP------------------GITHPVKDGDTVTLGGLEFEVLAVPGHTLGHIAYYLP--DSPALFCGDTLF 129 (248)
T ss_pred --------CC------------------CCcEEeCCCCEEEECCEEEEEEECCCCCcccEEEEEC--CCCEEEEcCccc
Confidence 00 01245777889999998888774 6899999999886 467999999864
No 34
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=99.22 E-value=1.1e-11 Score=89.99 Aligned_cols=42 Identities=40% Similarity=0.780 Sum_probs=37.1
Q ss_pred EeeceeeEEEEecccCCCHHHHHHHHHHhCCCeEEEEcCChH
Q psy8348 369 RLPLKMSVDYISFSAHTDYQQTSEFVRELRPAHVVLVHGEQN 410 (622)
Q Consensus 369 ~i~~~~~v~~i~fS~Had~~el~~~i~~l~P~~VilvHGe~~ 410 (622)
.++++|+|..++||+|||++||.+|++.++|+++||||||++
T Consensus 2 ~i~v~a~v~~~~fSgHad~~~L~~~i~~~~p~~vilVHGe~~ 43 (43)
T PF07521_consen 2 MIPVRARVEQIDFSGHADREELLEFIEQLNPRKVILVHGEPR 43 (43)
T ss_dssp EEE--SEEEESGCSSS-BHHHHHHHHHHHCSSEEEEESSEHH
T ss_pred EEEeEEEEEEEeecCCCCHHHHHHHHHhcCCCEEEEecCCCC
Confidence 578999999999999999999999999999999999999974
No 35
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.17 E-value=4.6e-10 Score=117.97 Aligned_cols=133 Identities=16% Similarity=0.226 Sum_probs=101.1
Q ss_pred CCCCCcEEEEEECCeEEEEeCCCCCCCCC-CCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhh
Q psy8348 9 QEVGRSCIMLEFKNKSIMMDCGIHPGLSG-MDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHAT 87 (622)
Q Consensus 9 ~evG~sc~lI~~~~~~ILiD~G~~~~~~~-~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t 87 (622)
+.+.-|+|||. +++.+|||++-..-... +..+ -+.+++++||+|+++|...||+|+++.+++.. .+++|++|...
T Consensus 32 ~GttyNSYLI~-~~k~aLID~~~~~~~~~~l~~l--~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~-p~a~ii~s~~~ 107 (388)
T COG0426 32 RGTTYNSYLIV-GDKTALIDTVGEKFFDEYLENL--SKYIDPKEIDYIIVNHTEPDHSGSLPELLELA-PNAKIICSKLA 107 (388)
T ss_pred CCceeeeEEEe-CCcEEEECCCCcchHHHHHHHH--HhhcChhcCeEEEECCCCcchhhhHHHHHHhC-CCCEEEeeHHH
Confidence 34567999999 99999999984211100 0111 13468899999999999999999999988765 58999999999
Q ss_pred HHHHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEEeC--CCCCCcEEEEEEECCEEEEEE
Q psy8348 88 KAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNA--GHVLGAAMFLIEIAGVKILYT 165 (622)
Q Consensus 88 ~~i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~~a--GH~~Gs~~~~I~~~~~~Ilyt 165 (622)
+..++.+..+. ..+..++.++.++++|.+++++++ =|.||+...+.. ..+||||
T Consensus 108 ~~~L~~~~~~~----------------------~~~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd~m~TYd~--~~kILFS 163 (388)
T COG0426 108 ARFLKGFYHDP----------------------EWFKIVKTGDTLDLGGHTLKFIPAPFLHWPDTMFTYDP--EDKILFS 163 (388)
T ss_pred HHHHHHhcCCc----------------------cceeecCCCCEeccCCcEEEEEeCCCCCCCCceeEeec--CCcEEEc
Confidence 88876543221 015788999999999988888866 599998766543 6789999
Q ss_pred cCCC
Q psy8348 166 GDFS 169 (622)
Q Consensus 166 GD~~ 169 (622)
+|+.
T Consensus 164 ~D~f 167 (388)
T COG0426 164 CDAF 167 (388)
T ss_pred cccc
Confidence 9975
No 36
>PRK11539 ComEC family competence protein; Provisional
Probab=99.17 E-value=2.4e-10 Score=133.32 Aligned_cols=161 Identities=18% Similarity=0.176 Sum_probs=107.6
Q ss_pred CcEEEEEECCeEEEEeCCCCCCCCC---CCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhHH
Q psy8348 13 RSCIMLEFKNKSIMMDCGIHPGLSG---MDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKA 89 (622)
Q Consensus 13 ~sc~lI~~~~~~ILiD~G~~~~~~~---~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~~ 89 (622)
+.|++++.+++++|+|+|...+... ....|++..... ++|++++||.|.||+||++.+.++. ...++|.+....
T Consensus 511 G~a~li~~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi-~lD~lilSH~d~DH~GGl~~Ll~~~-~~~~i~~~~~~~- 587 (755)
T PRK11539 511 GLAVVIERNGKAILYDTGNAWPTGDSAQQVIIPWLRWHGL-TPEGIILSHEHLDHRGGLASLLHAW-PMAWIRSPLNWA- 587 (755)
T ss_pred ceEEEEEECCEEEEEeCCCCCCCCcchHHHHHHHHHHcCC-CcCEEEeCCCCcccCCCHHHHHHhC-CcceeeccCccc-
Confidence 4678899999999999995322111 113466555555 5999999999999999999988764 245677643110
Q ss_pred HHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEEe-CCCC-----CCcEEEEEEECCEEEE
Q psy8348 90 IYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYN-AGHV-----LGAAMFLIEIAGVKIL 163 (622)
Q Consensus 90 i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~~-aGH~-----~Gs~~~~I~~~~~~Il 163 (622)
.......++.++.+|++++++. .+|. .+||.+.++.++.+++
T Consensus 588 --------------------------------~~~~~~~g~~~~~~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~~~~~~L 635 (755)
T PRK11539 588 --------------------------------NHLPCVRGEQWQWQGLTFSVHWPLEQSNDAGNNDSCVIRVDDGKHSIL 635 (755)
T ss_pred --------------------------------CcccccCCCeEeECCEEEEEEecCcccCCCCCCccEEEEEEECCEEEE
Confidence 0012345677888999998773 3443 4689999999999999
Q ss_pred EEcCCCCCccccccccCCCCCCCcEEEEcccCCCCCCchhhhHHHHHHHHH
Q psy8348 164 YTGDFSRQEDRHLMAAEIPPVKPDILITESTYGTHVHEQREEREGRFTSLI 214 (622)
Q Consensus 164 ytGD~~~~~~~~l~~a~~~~~~~DvLI~EsTyg~~~~~~~~~~~~~~~~~i 214 (622)
+|||.....+..+....-...++|+|..- .|.++......|.+.+
T Consensus 636 ltGDi~~~~E~~Ll~~~~~~l~~dvL~vp------HHGS~tSss~~fl~~v 680 (755)
T PRK11539 636 LTGDLEAQAEQKLLSRYWQQLAATLLQVP------HHGSNTSSSLPFIRAV 680 (755)
T ss_pred EEeCCChHHHHHHHhcCccCcCCCEEEeC------CCCCCCCChHHHHHhc
Confidence 99999877666554321123478998862 2333333334565544
No 37
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.17 E-value=2e-10 Score=132.38 Aligned_cols=147 Identities=19% Similarity=0.281 Sum_probs=103.1
Q ss_pred CcEEEEEECCeEEEEeCCCCCCCCC---CCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhHH
Q psy8348 13 RSCIMLEFKNKSIMMDCGIHPGLSG---MDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKA 89 (622)
Q Consensus 13 ~sc~lI~~~~~~ILiD~G~~~~~~~---~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~~ 89 (622)
+.|++|+.+++.+|+|||....... ....|++...... ||++++||.|.||+||++.+.++.. ..+++.+....
T Consensus 450 Gdaili~~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~-ID~lilTH~d~DHiGGl~~ll~~~~-v~~i~~~~~~~- 526 (662)
T TIGR00361 450 GLAMFIGANGKGILYDTGEPWREGSLGEKVIIPFLTAKGIK-LEALILSHADQDHIGGAEIILKHHP-VKRLVIPKGFV- 526 (662)
T ss_pred ceEEEEEECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCC-cCEEEECCCchhhhCcHHHHHHhCC-ccEEEeccchh-
Confidence 4689999999999999995321111 1135666555666 9999999999999999999887642 24566653310
Q ss_pred HHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEEeCCC------CCCcEEEEEEECCEEEE
Q psy8348 90 IYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGH------VLGAAMFLIEIAGVKIL 163 (622)
Q Consensus 90 i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~~aGH------~~Gs~~~~I~~~~~~Il 163 (622)
. . -.....+..++.++++|++++++.++. .-.|+.+.++.++.+++
T Consensus 527 -------~-----~----------------~~~~~~~~~G~~~~~~~~~~~vL~P~~~~~~~~N~~S~vl~i~~~~~~~L 578 (662)
T TIGR00361 527 -------E-----E----------------GVAIEECKRGDVWQWQGLQFHVLSPEAPDPASKNNHSCVLWVDDGGNSWL 578 (662)
T ss_pred -------h-----C----------------CCceEecCCCCEEeECCEEEEEECCCCccCCCCCCCceEEEEEECCeeEE
Confidence 0 0 012345667888899999999885542 23588999999999999
Q ss_pred EEcCCCCCccccccccCCCCCCCcEEEE
Q psy8348 164 YTGDFSRQEDRHLMAAEIPPVKPDILIT 191 (622)
Q Consensus 164 ytGD~~~~~~~~l~~a~~~~~~~DvLI~ 191 (622)
+|||.....+..+.. ..+..++|+|..
T Consensus 579 ~tGD~~~~~E~~l~~-~~~~l~~dvLk~ 605 (662)
T TIGR00361 579 LTGDLEAEGEQEVMR-VFPNIKADVLQV 605 (662)
T ss_pred EecCCCHHHHHHHHh-cccCcCccEEEe
Confidence 999998866554432 223457899987
No 38
>KOG2121|consensus
Probab=99.16 E-value=2.1e-11 Score=134.22 Aligned_cols=184 Identities=20% Similarity=0.263 Sum_probs=109.5
Q ss_pred cEecCCCCCCC-----CcEEEEEECCeE-EEEeCCCCCCCCCCCCCCCC---CCC--CCCCccEEEcCCCchhhhcchHH
Q psy8348 2 KTLKGAGQEVG-----RSCIMLEFKNKS-IMMDCGIHPGLSGMDALPFV---DLV--ESDQIDLLLISHFHLDHCGALPW 70 (622)
Q Consensus 2 v~~LG~g~evG-----~sc~lI~~~~~~-ILiD~G~~~~~~~~~~lp~~---~~~--~~~~Id~IlITH~H~DHiggLp~ 70 (622)
|.+||.|.... -|+++++.+... ||+|||-. . +..+-.. +.. -..++.+|+|||.|.||..|++.
T Consensus 445 Ii~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDCGEg--T--lgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~ 520 (746)
T KOG2121|consen 445 IIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDCGEG--T--LGQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLIS 520 (746)
T ss_pred EEEecCCccCCCcccceEEEEEeccCCccEEeecCCc--h--HHHHHHHhhhcchHHHHHhHHHHHHHhhcccccccHHH
Confidence 67899998764 378999986655 99999942 0 1111000 111 23578899999999999999999
Q ss_pred HHHhcCC------CCeEEechhhHHHHHHHHHhHHhhhccc--------ccccCCCHHHHHHhhcccEEecCCCeE-EeC
Q psy8348 71 FLLKTGF------KGRCFMTHATKAIYRWLLSDYIKVSNIS--------TEQMLYTESDLEKSMDKIETINFHEEK-DVN 135 (622)
Q Consensus 71 l~~~~~~------~~~Iy~t~~t~~i~~~~l~d~~~~~~~~--------~~~~ly~~~di~~~~~~i~~i~~~~~~-~i~ 135 (622)
+++...- .-+++...|. .+..+++.|.+..... ....+|+........ +.+ ..+.+ +.+
T Consensus 521 vL~~r~k~~k~~~~~pl~vv~P~--ql~~wl~~y~~~~~~~~~~~~~i~~~g~lf~~~s~~s~~---~~~-~~~~l~~~~ 594 (746)
T KOG2121|consen 521 VLQARTKLLKGVENSPLLVVAPR--QLKKWLQEYHRCPSFPASSVAKIGAPGALFAQKSPDSVP---ERL-LSYLLRELG 594 (746)
T ss_pred HHHHHHHhccccccCceEEeChH--HHHHHHHHHhcCcccchhhhhhhcCchhhhhccCccccc---hhh-hhHHHHhcC
Confidence 8775321 1244444332 2333344443221110 011111100000000 000 00111 235
Q ss_pred CEEEEEEeCCCCCCcEEEEEEEC-CEEEEEEcCCCCCccccccccCCCCCCCcEEEEcccCCCCCC
Q psy8348 136 GIKFSAYNAGHVLGAAMFLIEIA-GVKILYTGDFSRQEDRHLMAAEIPPVKPDILITESTYGTHVH 200 (622)
Q Consensus 136 gi~v~~~~aGH~~Gs~~~~I~~~-~~~IlytGD~~~~~~~~l~~a~~~~~~~DvLI~EsTyg~~~~ 200 (622)
...|...++-|++-|++..|..+ +.|++|+||++..++....+ .++|+||+|+|+.+..+
T Consensus 595 l~~i~tc~viHCp~syg~~i~~~~~~Ki~YSGDTrP~~~~v~~g-----~datlLIHEAT~ED~l~ 655 (746)
T KOG2121|consen 595 LESIQTCPVIHCPQSYGCSITHGSGWKIVYSGDTRPCEDLVKAG-----KDATLLIHEATLEDDLE 655 (746)
T ss_pred ceeEEecCcEecChhhceeEecccceEEEEcCCCCCchhHhhhc-----cCCceEEeehhhchhHH
Confidence 66788888999999999888764 48999999999866543322 48999999999987654
No 39
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.15 E-value=8e-11 Score=119.98 Aligned_cols=129 Identities=12% Similarity=0.105 Sum_probs=86.8
Q ss_pred cEecCCCCCCCCc-EEEEEEC--CeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCC
Q psy8348 2 KTLKGAGQEVGRS-CIMLEFK--NKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFK 78 (622)
Q Consensus 2 v~~LG~g~evG~s-c~lI~~~--~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~ 78 (622)
|.+++... .| ||+|..+ +..++||+|.. .. .+..+.. ...+|++||+||.|.||+||+..+.++. .+
T Consensus 3 i~~~~~~~---dNy~Yli~d~~~~~~vlIDp~~~---~~--il~~l~~-~g~~l~~Il~TH~H~DH~gG~~~l~~~~-~~ 72 (258)
T PLN02469 3 IIPVPCLE---DNYAYLIIDESTKDAAVVDPVDP---EK--VLQAAHE-HGAKIKLVLTTHHHWDHAGGNEKIKKLV-PG 72 (258)
T ss_pred EEEecccc---ceEEEEEEeCCCCeEEEECCCCh---HH--HHHHHHH-cCCcccEEEecCCCCccccCHHHHHHHC-CC
Confidence 44555443 45 9999765 47999998831 11 1111111 1247999999999999999999987763 25
Q ss_pred CeEEechhhHHHHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCC-EEEEEE-eCCCCCCcEEEEEE
Q psy8348 79 GRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNG-IKFSAY-NAGHVLGAAMFLIE 156 (622)
Q Consensus 79 ~~Iy~t~~t~~i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~g-i~v~~~-~aGH~~Gs~~~~I~ 156 (622)
.+||++.... . . .....+..++.+.+++ ..++++ .+||++|+++|++.
T Consensus 73 ~~V~~~~~~~----------~--~------------------~~~~~v~~gd~i~lg~~~~~~vi~tPGHT~ghi~~~~~ 122 (258)
T PLN02469 73 IKVYGGSLDN----------V--K------------------GCTHPVENGDKLSLGKDVNILALHTPCHTKGHISYYVT 122 (258)
T ss_pred CEEEEechhc----------C--C------------------CCCeEeCCCCEEEECCceEEEEEECCCCCCCCEEEEec
Confidence 7899875320 0 0 0114567788899975 566655 47999999999986
Q ss_pred EC--CEEEEEEcCCCC
Q psy8348 157 IA--GVKILYTGDFSR 170 (622)
Q Consensus 157 ~~--~~~IlytGD~~~ 170 (622)
.. +.+++||||+-+
T Consensus 123 ~~~~~~~~lFtGDtLf 138 (258)
T PLN02469 123 GKEGEDPAVFTGDTLF 138 (258)
T ss_pred cCCCCCCEEEecCccc
Confidence 42 346999999754
No 40
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.09 E-value=3.1e-10 Score=118.76 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=84.5
Q ss_pred cEEEEEEC--CeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhHHHH
Q psy8348 14 SCIMLEFK--NKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIY 91 (622)
Q Consensus 14 sc~lI~~~--~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~~i~ 91 (622)
.||+|..+ +..++||+|.. ...++.+ .. ...+|++||+||.|.||+||+..|.++ ++++||++..+.+..
T Consensus 88 y~Yli~d~~t~~~~vVDP~~a--~~vl~~l---~~-~g~~L~~ILlTH~H~DH~GG~~~L~~~--~ga~V~g~~~~~~~i 159 (329)
T PLN02398 88 YAYLLHDEDTGTVGVVDPSEA--VPVIDAL---SR-KNRNLTYILNTHHHYDHTGGNLELKAR--YGAKVIGSAVDKDRI 159 (329)
T ss_pred EEEEEEECCCCEEEEEcCCCH--HHHHHHH---Hh-cCCCceEEEECCCCchhhCCHHHHHHh--cCCEEEEehHHhhhc
Confidence 48988653 46899998831 1111111 11 235799999999999999999998776 458999987643211
Q ss_pred HHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEE-eCCCCCCcEEEEEEECCEEEEEEcCCCC
Q psy8348 92 RWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAY-NAGHVLGAAMFLIEIAGVKILYTGDFSR 170 (622)
Q Consensus 92 ~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~-~aGH~~Gs~~~~I~~~~~~IlytGD~~~ 170 (622)
. ..-..+..++.+.++|.+++++ .+||++|+++|++. +.+++|+||+-.
T Consensus 160 ~----------------------------~~d~~v~dGd~i~lgg~~l~vi~tPGHT~GhI~~~~~--~~~vLFtGDtLf 209 (329)
T PLN02398 160 P----------------------------GIDIVLKDGDKWMFAGHEVLVMETPGHTRGHISFYFP--GSGAIFTGDTLF 209 (329)
T ss_pred c----------------------------CCcEEeCCCCEEEECCeEEEEEeCCCcCCCCEEEEEC--CCCEEEECCCcC
Confidence 0 0124567788899988888765 46999999999874 456999999865
No 41
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.08 E-value=3.3e-10 Score=113.76 Aligned_cols=147 Identities=21% Similarity=0.307 Sum_probs=84.4
Q ss_pred CCCcEEEEEECC-eEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhHH
Q psy8348 11 VGRSCIMLEFKN-KSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKA 89 (622)
Q Consensus 11 vG~sc~lI~~~~-~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~~ 89 (622)
...+++++..++ ..+|||||..... ............. +|++|++||.|.||+||+..+.+... ..+++.......
T Consensus 23 ~~~~~~~~~~~~~~~~liD~G~~~~~-~~~~~~~l~~~~~-~i~~vilTH~H~DH~gg~~~~~~~~~-~~~~~~~~~~~~ 99 (252)
T COG0491 23 SGNSVYLLVDGEGGAVLIDTGLGDAD-AEALLEALAALGL-DVDAILLTHGHFDHIGGAAVLKEAFG-AAPVIAPAEVPL 99 (252)
T ss_pred ccccEEEEEcCCCceEEEeCCCCchH-HHHHHHHHHHcCC-ChheeeecCCchhhhccHHHHHhhcC-CceEEccchhhh
Confidence 344556666555 8999999974320 0000111111222 89999999999999999999876543 366744443333
Q ss_pred HHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCC--EEEEEEeCCCCCCcEEEEEEECCEEEEEEcC
Q psy8348 90 IYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNG--IKFSAYNAGHVLGAAMFLIEIAGVKILYTGD 167 (622)
Q Consensus 90 i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~g--i~v~~~~aGH~~Gs~~~~I~~~~~~IlytGD 167 (622)
............. . ....+. ..........++.+.+++ +++... +||++|+.+|.++..+ ++|+||
T Consensus 100 ~~~~~~~~~~~~~-~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~t-pGHT~g~~~~~~~~~~--~l~~gD 167 (252)
T COG0491 100 LLREEILRKAGVT-A--EAYAAP------GASPLRALEDGDELDLGGLELEVLHT-PGHTPGHIVFLLEDGG--VLFTGD 167 (252)
T ss_pred hhhcccccccccc-c--ccCCCC------ccccceecCCCCEEEecCeEEEEEEC-CCCCCCeEEEEECCcc--EEEecc
Confidence 2221110000000 0 000000 112334555778888887 444444 4999999999998544 999999
Q ss_pred CCCCc
Q psy8348 168 FSRQE 172 (622)
Q Consensus 168 ~~~~~ 172 (622)
.-...
T Consensus 168 ~~~~~ 172 (252)
T COG0491 168 TLFAG 172 (252)
T ss_pred eeccC
Confidence 87644
No 42
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.08 E-value=3e-10 Score=115.05 Aligned_cols=125 Identities=13% Similarity=0.126 Sum_probs=84.3
Q ss_pred CCCcEEEEEE----CCeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechh
Q psy8348 11 VGRSCIMLEF----KNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHA 86 (622)
Q Consensus 11 vG~sc~lI~~----~~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~ 86 (622)
.+.+||+|.. +++.++||+|.... ..+ +..+... -.+|.+||+||.|.||++|++.+.++. .+.++|+...
T Consensus 21 ~~~~~Yll~d~~~~~~~avlIDP~~~~~-~~~--l~~l~~~-g~~i~~Il~TH~H~DHigg~~~l~~~~-~~a~v~~~~~ 95 (251)
T PLN02962 21 SSTYTYLLADVSHPDKPALLIDPVDKTV-DRD--LSLVKEL-GLKLIYAMNTHVHADHVTGTGLLKTKL-PGVKSIISKA 95 (251)
T ss_pred ceeEEEEEEeCCCCCCEEEEECCCCCcH-HHH--HHHHHHC-CCeeEEEEcCCCCchhHHHHHHHHHHC-CCCeEEeccc
Confidence 4678999865 36789999984111 000 1111111 236889999999999999999986653 2578887542
Q ss_pred hHHHHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEE-eCCCCCCcEEEEEEE----CCEE
Q psy8348 87 TKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAY-NAGHVLGAAMFLIEI----AGVK 161 (622)
Q Consensus 87 t~~i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~-~aGH~~Gs~~~~I~~----~~~~ 161 (622)
.. + ..-..+..++.+.+++.+++++ .+||++|+++|++.. +..+
T Consensus 96 ~~----------------------~---------~~d~~l~~g~~i~~g~~~l~vi~tPGHT~g~v~~~~~d~~~~~~~~ 144 (251)
T PLN02962 96 SG----------------------S---------KADLFVEPGDKIYFGDLYLEVRATPGHTAGCVTYVTGEGPDQPQPR 144 (251)
T ss_pred cC----------------------C---------CCCEEeCCCCEEEECCEEEEEEECCCCCcCcEEEEeccCCCCCccc
Confidence 10 0 0013466788899999877765 569999999998753 2357
Q ss_pred EEEEcCCCCC
Q psy8348 162 ILYTGDFSRQ 171 (622)
Q Consensus 162 IlytGD~~~~ 171 (622)
++||||+-..
T Consensus 145 ~lftGD~Lf~ 154 (251)
T PLN02962 145 MAFTGDALLI 154 (251)
T ss_pred eEEECCeecc
Confidence 9999997653
No 43
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.05 E-value=3e-10 Score=115.54 Aligned_cols=116 Identities=21% Similarity=0.261 Sum_probs=79.3
Q ss_pred cEEEEEE-CCeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhHHHHH
Q psy8348 14 SCIMLEF-KNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYR 92 (622)
Q Consensus 14 sc~lI~~-~~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~~i~~ 92 (622)
.+|++.. +++.++||+|.. .. .+..+... ..++++|++||.|.||+||+..+.++. ...+||++..+..-
T Consensus 13 y~~li~~~~~~~ilIDpg~~--~~---vl~~l~~~-g~~l~~IllTH~H~DHigG~~~l~~~~-~~~~V~~~~~~~~~-- 83 (251)
T PRK10241 13 YIWVLNDEAGRCLIVDPGEA--EP---VLNAIAEN-NWQPEAIFLTHHHHDHVGGVKELVEKF-PQIVVYGPQETQDK-- 83 (251)
T ss_pred EEEEEEcCCCcEEEECCCCh--HH---HHHHHHHc-CCccCEEEeCCCCchhhccHHHHHHHC-CCCEEEeccccccc--
Confidence 3477754 457899999942 11 01111111 125789999999999999999987763 25789986543100
Q ss_pred HHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEEe-CCCCCCcEEEEEEECCEEEEEEcCCCC
Q psy8348 93 WLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYN-AGHVLGAAMFLIEIAGVKILYTGDFSR 170 (622)
Q Consensus 93 ~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~~-aGH~~Gs~~~~I~~~~~~IlytGD~~~ 170 (622)
.....+..++.+.++|.+++++. +||++|+++|+. ..++||||+-.
T Consensus 84 ----------------------------~~~~~v~~g~~i~ig~~~~~vi~tPGHT~ghi~~~~----~~~lFtGDtlf 130 (251)
T PRK10241 84 ----------------------------GTTQVVKDGETAFVLGHEFSVFATPGHTLGHICYFS----KPYLFCGDTLF 130 (251)
T ss_pred ----------------------------CCceEeCCCCEEEeCCcEEEEEEcCCCCccceeeec----CCcEEEcCeec
Confidence 01245667888899888887764 799999999964 25899999754
No 44
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.03 E-value=1.6e-09 Score=102.72 Aligned_cols=126 Identities=25% Similarity=0.311 Sum_probs=78.7
Q ss_pred CCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhHHH
Q psy8348 11 VGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAI 90 (622)
Q Consensus 11 vG~sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~~i 90 (622)
.|.+|++|+.++.+||+|+... . .++. ....++|+|+|||.|.||+.. +.+ .+ +
T Consensus 5 lgha~~~ie~~g~~iliDP~~~--~-----~~~~--~~~~~~D~IlisH~H~DH~~~-~~l-~~------~--------- 58 (163)
T PF13483_consen 5 LGHASFLIETGGKRILIDPWFS--S-----VGYA--PPPPKADAILISHSHPDHFDP-ETL-KR------L--------- 58 (163)
T ss_dssp EETTEEEEEETTEEEEES--TT--T-------T---TSS-B-SEEEESSSSTTT-CC-CCC-CC------H---------
T ss_pred EEeeEEEEEECCEEEEECCCCC--c-----cCcc--cccCCCCEEEECCCccccCCh-hHh-hh------c---------
Confidence 4689999999999999998841 0 1110 123689999999999999975 111 00 0
Q ss_pred HHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEEeCCCC-------CCcEEEEEEECCEEEE
Q psy8348 91 YRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHV-------LGAAMFLIEIAGVKIL 163 (622)
Q Consensus 91 ~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~~aGH~-------~Gs~~~~I~~~~~~Il 163 (622)
..++..+..++.+++++++++.+++-|. ...++|+++.++.+++
T Consensus 59 -----------------------------~~~~~vv~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~ 109 (163)
T PF13483_consen 59 -----------------------------DRDIHVVAPGGEYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIY 109 (163)
T ss_dssp -----------------------------HTSSEEE-TTEEEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEE
T ss_pred -----------------------------ccccEEEccceEEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEE
Confidence 1245677778889999999999887663 2479999999999999
Q ss_pred EEcCCCCCccccccccCCCCCCCcEEEEccc
Q psy8348 164 YTGDFSRQEDRHLMAAEIPPVKPDILITEST 194 (622)
Q Consensus 164 ytGD~~~~~~~~l~~a~~~~~~~DvLI~EsT 194 (622)
+.||.....+..... . ..++|++++-..
T Consensus 110 ~~Gd~~~~~~~~~~~-~--~~~vDvl~~p~~ 137 (163)
T PF13483_consen 110 HAGDTGFPPDDEQLK-Q--LGKVDVLFLPVG 137 (163)
T ss_dssp E-TT--S---HHHHH-H--H-S-SEEEEE--
T ss_pred EECCCccCCCHHHHh-c--ccCCCEEEecCC
Confidence 999998643322111 1 137999998653
No 45
>KOG0813|consensus
Probab=98.84 E-value=6.1e-09 Score=104.22 Aligned_cols=127 Identities=19% Similarity=0.269 Sum_probs=87.8
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCCCCC--CCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhHH
Q psy8348 12 GRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLV--ESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKA 89 (622)
Q Consensus 12 G~sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~~--~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~~ 89 (622)
+.++||+..+..++..|.|. |+... ...+..... ...++.+||.||.|.||+||+..+.+...++.++|......
T Consensus 12 ~Ny~YLl~~~~~~~~a~~vD-P~~pe-~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~~~r- 88 (265)
T KOG0813|consen 12 DNYMYLLGDGDKTIDADLVD-PAEPE-YVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGADDR- 88 (265)
T ss_pred CceEEEEecccceeeeeeec-CcchH-HHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEEecCChhc-
Confidence 45789998878888888774 22110 011111111 34578999999999999999999877643456666653110
Q ss_pred HHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEE-eCCCCCCcEEEEEE-ECCEEEEEEcC
Q psy8348 90 IYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAY-NAGHVLGAAMFLIE-IAGVKILYTGD 167 (622)
Q Consensus 90 i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~-~aGH~~Gs~~~~I~-~~~~~IlytGD 167 (622)
+- . --..++.++++.++|.+|+++ .+||+-|+.+|++. ..+.+.+||||
T Consensus 89 ~~-----------------------~------i~~~~~~~e~~~~~g~~v~~l~TPgHT~~hi~~~~~~~~~e~~iFtGD 139 (265)
T KOG0813|consen 89 IP-----------------------G------ITRGLKDGETVTVGGLEVRCLHTPGHTAGHICYYVTESTGERAIFTGD 139 (265)
T ss_pred Cc-----------------------c------ccccCCCCcEEEECCEEEEEEeCCCccCCcEEEEeecCCCCCeEEeCC
Confidence 00 0 012377889999999999877 56999999999998 56789999999
Q ss_pred CCC
Q psy8348 168 FSR 170 (622)
Q Consensus 168 ~~~ 170 (622)
.-.
T Consensus 140 tlf 142 (265)
T KOG0813|consen 140 TLF 142 (265)
T ss_pred cee
Confidence 743
No 46
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.83 E-value=9.5e-08 Score=97.70 Aligned_cols=156 Identities=18% Similarity=0.207 Sum_probs=98.7
Q ss_pred CCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCC-CCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhH-
Q psy8348 11 VGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPF-VDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATK- 88 (622)
Q Consensus 11 vG~sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~-~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~- 88 (622)
.|.||++|++++.+||+|....+...... .+. ........+|+|+|||.|.||++.--. .....-+.+++..+...
T Consensus 12 lGha~~lie~~~~~iliDP~~~~~~~~~~-~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~-~~~~~~~~~~~~~p~~~~ 89 (258)
T COG2220 12 LGHAAFLIETGGKRILIDPVLSGAPSPSN-FPGGLFEDLLPPIDYILITHDHYDHLDDETL-IALRTNKAPVVVVPLGAG 89 (258)
T ss_pred ecceEEEEEECCEEEEECcccCCCCCccc-ccCcCChhhcCCCCEEEEeCCCccccCHHHH-HHHhcCCCcEEEeHHHHH
Confidence 48899999999999999998754321111 100 111235679999999999999975332 22221134555555443
Q ss_pred HHHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEEeCCCC-----C--------CcEEEEE
Q psy8348 89 AIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHV-----L--------GAAMFLI 155 (622)
Q Consensus 89 ~i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~~aGH~-----~--------Gs~~~~I 155 (622)
.... .+- + ...++...++++.+++++.++++.++-|. + +.++|++
T Consensus 90 ~~~~---~~g-----------------~--~~~~~~~~~~~~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi 147 (258)
T COG2220 90 DLLI---RDG-----------------V--EAERVHELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVI 147 (258)
T ss_pred HHHH---hcC-----------------C--CcceEEeecCCceEEecCcEEEEEEeecccccccCCCCccccCCceEEEE
Confidence 2210 000 0 01246678889999999988876665443 2 3678999
Q ss_pred EECCEEEEEEcCCCCCccccccccCCCCCCCcEEEEccc
Q psy8348 156 EIAGVKILYTGDFSRQEDRHLMAAEIPPVKPDILITEST 194 (622)
Q Consensus 156 ~~~~~~IlytGD~~~~~~~~l~~a~~~~~~~DvLI~EsT 194 (622)
+.++.++++.||+.. ...... .....+|+++++..
T Consensus 148 ~~~g~~iyh~GDt~~---~~~~~~-~~~~~~DvallPig 182 (258)
T COG2220 148 ETPGGRVYHAGDTGY---LFLIIE-ELDGPVDVALLPIG 182 (258)
T ss_pred EeCCceEEeccCccH---HHHhhh-hhcCCccEEEeccC
Confidence 999999999999987 111111 11224899999865
No 47
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.79 E-value=3.8e-09 Score=104.48 Aligned_cols=74 Identities=22% Similarity=0.297 Sum_probs=56.6
Q ss_pred cEEEEEECCeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhHH
Q psy8348 14 SCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKA 89 (622)
Q Consensus 14 sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~~ 89 (622)
=++||+.++++||+|+|..+.. -+... ..-++++.+||+++|||.|.||+|||+++++......+||+++....
T Consensus 23 fS~LVE~~~~riLFDtG~~~~~-ll~Na-~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~ 96 (259)
T COG1237 23 FSALVEDEGTRILFDTGTDSDV-LLHNA-RLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFK 96 (259)
T ss_pred eEEEEEcCCeEEEEeCCCCcHH-HHHHH-HHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHh
Confidence 4678999999999999964321 00000 11246888999999999999999999999887767889999876544
No 48
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.73 E-value=1.9e-07 Score=91.27 Aligned_cols=226 Identities=20% Similarity=0.215 Sum_probs=124.5
Q ss_pred cEecCCCC-CCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCCCCC------------CCCCccEEEcCCCchhhhcch
Q psy8348 2 KTLKGAGQ-EVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLV------------ESDQIDLLLISHFHLDHCGAL 68 (622)
Q Consensus 2 v~~LG~g~-evG~sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~~------------~~~~Id~IlITH~H~DHiggL 68 (622)
|+|+|.-+ .|-.-|.++++++..||||+|...+......-|.-..+ -..+.|.|.|||+|.||..-
T Consensus 3 V~Pla~eSLGVRSmAt~vet~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtP- 81 (304)
T COG2248 3 VIPLASESLGVRSMATFVETKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTP- 81 (304)
T ss_pred eeeccccccchhhhhheeecCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCc-
Confidence 56776654 34445889999999999999987554444333322111 13578899999999999853
Q ss_pred HHH---HHh------cCCCCe-EEechhhHHHHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEE
Q psy8348 69 PWF---LLK------TGFKGR-CFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIK 138 (622)
Q Consensus 69 p~l---~~~------~~~~~~-Iy~t~~t~~i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~ 138 (622)
++ ... .-++++ +++-+||..+-+.......++. -...++ .+-.....++++++++..
T Consensus 82 -f~~~~y~~s~e~~~eiY~gK~lLlKhPte~IN~SQ~~Ra~~fl--------~~~~~~----~~~ie~ADgk~f~fG~t~ 148 (304)
T COG2248 82 -FFDGIYEASGETAKEIYKGKLLLLKHPTENINRSQRRRAYRFL--------ESLKDI----AREIEYADGKTFEFGGTV 148 (304)
T ss_pred -cccchhhhcccchHHHhcCcEEEecCchhhhCHHHHHHHHHHH--------HHhhhh----cceeEecCCceEEeCCEE
Confidence 21 110 012333 4555666555332111111100 001111 122335567889999988
Q ss_pred EEEEe-CCCCC-----C-cEEEEEEECCEEEEEEcCCC-CCccccccccCCCCCCCcEEEEcc--cCCCCCCchhhhHHH
Q psy8348 139 FSAYN-AGHVL-----G-AAMFLIEIAGVKILYTGDFS-RQEDRHLMAAEIPPVKPDILITES--TYGTHVHEQREEREG 208 (622)
Q Consensus 139 v~~~~-aGH~~-----G-s~~~~I~~~~~~IlytGD~~-~~~~~~l~~a~~~~~~~DvLI~Es--Tyg~~~~~~~~~~~~ 208 (622)
+++-+ .-|.. | -.++.+..++.+++|+.|.. ...+..+ +.+...+||++|+.. ||--...-.....|.
T Consensus 149 IefS~pvpHG~eGskLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l--~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~ 226 (304)
T COG2248 149 IEFSPPVPHGREGSKLGYVLMVAVTDGKSSIVFASDVQGPINDEAL--EFILEKRPDVLIIGGPPTYLLGYRVGPKSLEK 226 (304)
T ss_pred EEecCCCCCCCcccccceEEEEEEecCCeEEEEcccccCCCccHHH--HHHHhcCCCEEEecCCchhHhhhhcChHHHHH
Confidence 88753 34654 3 24577788899999999986 3333332 223345899999976 322111111222332
Q ss_pred HHHHHHHHHHHcCC-eEEEeeccc--chHHHHHHHHHHH
Q psy8348 209 RFTSLIHDIVNRGG-RCLIPVFAL--GRAQELLLILDEY 244 (622)
Q Consensus 209 ~~~~~i~~~l~~gg-~vliP~fal--GR~qEll~iL~~~ 244 (622)
-.+.+++++++.+ +++|-...+ .+-.|.+.-+.+.
T Consensus 227 -~irNl~~ii~~~~~~lViDHHllRD~~y~e~l~~l~~~ 264 (304)
T COG2248 227 -GIRNLERIIEETNATLVIDHHLLRDKNYREFLEELFER 264 (304)
T ss_pred -HHHHHHHHHHhCcceEEEeehhhcCCCHHHHHHHHHhh
Confidence 2345566666664 444444443 3334555555544
No 49
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.64 E-value=5.3e-08 Score=100.20 Aligned_cols=171 Identities=12% Similarity=0.064 Sum_probs=85.2
Q ss_pred CCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhHHHHHH-----HHHhHHhhhcccccccCCCHHHHHHhhcccE
Q psy8348 50 DQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYRW-----LLSDYIKVSNISTEQMLYTESDLEKSMDKIE 124 (622)
Q Consensus 50 ~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~~i~~~-----~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~ 124 (622)
..+|+||+||.|.||+.|++.|... +..++++...+...... .+.+...... ..++...+ ...+
T Consensus 61 ~~idai~~TH~H~DHi~Gl~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~----~~~~ 129 (269)
T COG1235 61 SDLDAILLTHEHSDHIQGLDDLRRA--YTLPIYVNPGTLRASTSDRLLGGFPYLFRHPF-----PPFSLPAI----GGLE 129 (269)
T ss_pred cccCeEEEecccHHhhcChHHHHHH--hcCCcccccceecccchhhhhccchhhhcCCC-----Cccccccc----ccee
Confidence 5899999999999999999998775 34556665544332211 1111000000 00000000 0111
Q ss_pred Ee---cCCCeEEeCCEEEEEEeCC-CCCCcEEEEEEECCEEEEEEcCCCCCccccccccCCCCCCCcEEEEcccCCCCCC
Q psy8348 125 TI---NFHEEKDVNGIKFSAYNAG-HVLGAAMFLIEIAGVKILYTGDFSRQEDRHLMAAEIPPVKPDILITESTYGTHVH 200 (622)
Q Consensus 125 ~i---~~~~~~~i~gi~v~~~~aG-H~~Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~a~~~~~~~DvLI~EsTyg~~~~ 200 (622)
.. ..++.++..+..+..-... |.....+|.++...+.+.|++|+...++.+... -......++++.++++...-|
T Consensus 130 ~~~~~~~hd~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vay~~Dt~~~~~~~d~~-l~~~~~~~~~~~~~~~~~~gh 208 (269)
T COG1235 130 VTPFPVPHDAIEPVGFVIIRTGRKLHGGTDIGYGLEWRIGDVAYLTDTELFPSNHDVE-LLDNGLYPLDIKDRILPDPGH 208 (269)
T ss_pred eecCCCCCccccCCCcccccCcccccccccceeeeeeeeccEEEccccccCcchhHHH-HhcCCccceeeeeccccccCC
Confidence 11 1122222222222111111 233455666666668899999999776654411 112346788888988876544
Q ss_pred chhhhHHHHHHHHHHHHHHcCCeEEEeecccchH
Q psy8348 201 EQREEREGRFTSLIHDIVNRGGRCLIPVFALGRA 234 (622)
Q Consensus 201 ~~~~~~~~~~~~~i~~~l~~gg~vliP~falGR~ 234 (622)
.+.....+...+++... .-.++++...+.-.-
T Consensus 209 ~~~h~~~~~a~~~~~~~--~~~rivLtHls~~~~ 240 (269)
T COG1235 209 LSNHLSAEEALELIEKL--KPKRLVLTHLSHKND 240 (269)
T ss_pred CCCchhHHHHHHHHHhC--CcceEEEEecCCCCC
Confidence 44333222222333221 123477777665443
No 50
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=98.58 E-value=3.3e-07 Score=95.93 Aligned_cols=192 Identities=21% Similarity=0.174 Sum_probs=109.6
Q ss_pred cEecCCCC---CCCCcEEEEEEC--CeEEEEeCCCCCCC-C------CC-----CCCCCCC--C--------CCCCCccE
Q psy8348 2 KTLKGAGQ---EVGRSCIMLEFK--NKSIMMDCGIHPGL-S------GM-----DALPFVD--L--------VESDQIDL 54 (622)
Q Consensus 2 v~~LG~g~---evG~sc~lI~~~--~~~ILiD~G~~~~~-~------~~-----~~lp~~~--~--------~~~~~Id~ 54 (622)
|.+||.++ |-..+++|++.. +..+-+|+|..... . .. ...|+.. . +-...|.+
T Consensus 3 vi~LG~~GG~~e~nls~~L~~~~~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~~ 82 (335)
T PF02112_consen 3 VIVLGSGGGPDEGNLSAYLVRSIGSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIKG 82 (335)
T ss_pred EeecCCCCCCCCCCcceeeeeecCcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhhe
Confidence 34565544 567789999874 56889999964211 0 00 1122110 0 01247899
Q ss_pred EEcCCCchhhhcchHHHHHhcC----CCCeEEechhhHHHHHHHHHhHHhhhcccccccCCCHHHHH-HhhcccEEecCC
Q psy8348 55 LLISHFHLDHCGALPWFLLKTG----FKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLE-KSMDKIETINFH 129 (622)
Q Consensus 55 IlITH~H~DHiggLp~l~~~~~----~~~~Iy~t~~t~~i~~~~l~d~~~~~~~~~~~~ly~~~di~-~~~~~i~~i~~~ 129 (622)
.||||+|+||+.||-.-..... -+.+||..+.|.+.++..+-...-+.+...+. ... -..-+...+..+
T Consensus 83 ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~hiFN~~iWPNl~~~~------~~~~~~~~~~~~l~~~ 156 (335)
T PF02112_consen 83 YLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALKNHIFNDIIWPNLSDEG------EGDYLYKYRYFDLSPG 156 (335)
T ss_pred EEecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHHHcccCCccCCCCCCcC------cccceeeeeeeecccc
Confidence 9999999999999842211110 24579999999887764322111122221111 000 000112223333
Q ss_pred CeEEe-------------CCEEEEEEeCCCCCC------cEEEEEEECC--EEEEEEcCCCCCcccc--------cccc-
Q psy8348 130 EEKDV-------------NGIKFSAYNAGHVLG------AAMFLIEIAG--VKILYTGDFSRQEDRH--------LMAA- 179 (622)
Q Consensus 130 ~~~~i-------------~gi~v~~~~aGH~~G------s~~~~I~~~~--~~IlytGD~~~~~~~~--------l~~a- 179 (622)
+...+ .+..+++++..|.-+ |++|+|+... ..++|.||+....-.. ...+
T Consensus 157 ~~~~~~~~~~s~~~~~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e~Ds~s~~~~~~~iW~~~ap 236 (335)
T PF02112_consen 157 ELIPLNNTTLSVIPNEFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTEPDSVSKSPRNQKIWRYAAP 236 (335)
T ss_pred ceeeccccccccccccccccccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCCCCccccCchHHHHHHHHHh
Confidence 22221 245677799999754 7999999864 9999999998643211 1112
Q ss_pred CCCCCCCcEEEEcccCCCCC
Q psy8348 180 EIPPVKPDILITESTYGTHV 199 (622)
Q Consensus 180 ~~~~~~~DvLI~EsTyg~~~ 199 (622)
.++..+...+++||.|.+..
T Consensus 237 ~I~~~~LkaI~IEcS~~~~~ 256 (335)
T PF02112_consen 237 KIASGKLKAIFIECSYPNSQ 256 (335)
T ss_pred hccccccCEEEEEeCCCCCC
Confidence 34456788899999998653
No 51
>KOG0814|consensus
Probab=97.49 E-value=0.00017 Score=67.13 Aligned_cols=117 Identities=15% Similarity=0.210 Sum_probs=71.2
Q ss_pred cEEEEEE--CCeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhHHHH
Q psy8348 14 SCIMLEF--KNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIY 91 (622)
Q Consensus 14 sc~lI~~--~~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~~i~ 91 (622)
-.|++-. .++.++||.=........+. .+.+.. ++-+-+-||.|.||+-|-.++...+ +.+ +..+
T Consensus 22 ytYll~d~~~~~AviIDPV~et~~RD~ql---ikdLgl-~LiYa~NTH~HADHiTGtg~Lkt~~-pg~--------kSVi 88 (237)
T KOG0814|consen 22 YTYLLGDHKTGKAVIIDPVLETVSRDAQL---IKDLGL-DLIYALNTHVHADHITGTGLLKTLL-PGC--------KSVI 88 (237)
T ss_pred EEEEeeeCCCCceEEecchhhcccchHHH---HHhcCc-eeeeeecceeecccccccchHHHhc-ccH--------HHHh
Confidence 3466654 46789999765322222111 111222 4557789999999999987753322 111 1111
Q ss_pred HHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEE-eCCCCCCcEEEEEEECCEEEEEEcCC
Q psy8348 92 RWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAY-NAGHVLGAAMFLIEIAGVKILYTGDF 168 (622)
Q Consensus 92 ~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~-~aGH~~Gs~~~~I~~~~~~IlytGD~ 168 (622)
. +.+. . ..-..++.++.++++++.++.. .+||+.|+..|.+. +.+..||||.
T Consensus 89 s-------~~SG--a--------------kAD~~l~~Gd~i~~G~~~le~ratPGHT~GC~TyV~~--d~~~aFTGDa 141 (237)
T KOG0814|consen 89 S-------SASG--A--------------KADLHLEDGDIIEIGGLKLEVRATPGHTNGCVTYVEH--DLRMAFTGDA 141 (237)
T ss_pred h-------hccc--c--------------ccccccCCCCEEEEccEEEEEecCCCCCCceEEEEec--Ccceeeecce
Confidence 0 0000 0 0113467889999999888765 57999999888875 5679999995
No 52
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=97.10 E-value=0.003 Score=55.82 Aligned_cols=93 Identities=12% Similarity=0.193 Sum_probs=53.7
Q ss_pred CCCeEEEecCCCCCcchHHHHHHHHcCCCCCeEEE--eccCCCCCcccccccCCceeeeccCeEeeceeeEEEEecccCC
Q psy8348 308 IGPCVVMASPGMMQSGLSRELFEMWCTDAKNGVII--AGYCVEGTLAKTILSEPEEVIGMSGQRLPLKMSVDYISFSAHT 385 (622)
Q Consensus 308 ~~p~Vvias~gml~~G~s~~~l~~~~~d~~n~vil--~gy~~~gt~~~~l~~~~~~~~~~~g~~i~~~~~v~~i~fS~Ha 385 (622)
..-.|-+++-+.++......+++...+...+.|.| +|+.-......... . ..... ....+..+..++||.|+
T Consensus 12 ~~t~iHvv~~~~~~~~~l~~~~~~~~~~~~~vi~i~PTgW~~~~~~~~~~~-~---~~~~~--~~~~~~~~~~VPYSeHS 85 (110)
T PF07522_consen 12 SETRIHVVPMGQLSKETLEKYLKSLKPRFDPVIGIRPTGWSFSNKKKKSSV-S---ISPSL--QSRGNVRIYRVPYSEHS 85 (110)
T ss_pred CCCeEEEEECCcCCHHHHHHHHHhhcccCCCeEEEEeCccccccCCCcccc-c---ccccc--ccCCCceEEEEecccCC
Confidence 34566666555555445556666665555665444 34321110000000 0 00000 11224467889999999
Q ss_pred CHHHHHHHHHHhCCCeEEEEc
Q psy8348 386 DYQQTSEFVRELRPAHVVLVH 406 (622)
Q Consensus 386 d~~el~~~i~~l~P~~VilvH 406 (622)
+|.||.+|++.++|++|||+=
T Consensus 86 Sf~EL~~Fv~~l~P~~IiPtV 106 (110)
T PF07522_consen 86 SFSELKEFVSFLKPKKIIPTV 106 (110)
T ss_pred CHHHHHHHHHhcCCcEEEccc
Confidence 999999999999999999863
No 53
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=97.03 E-value=0.0016 Score=64.96 Aligned_cols=110 Identities=19% Similarity=0.247 Sum_probs=70.7
Q ss_pred CCccEEEcCCCchhhhcchH----HHHHhcCCCCeEEechhhHHHHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEE
Q psy8348 50 DQIDLLLISHFHLDHCGALP----WFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIET 125 (622)
Q Consensus 50 ~~Id~IlITH~H~DHiggLp----~l~~~~~~~~~Iy~t~~t~~i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~ 125 (622)
..|.--+|||+|+||+.|+- .+.++ -+..||....|.+.++...-..+-+.+. +.+ ....-+++.
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp~~~~q--kkkTI~gl~~tIDvL~khvFN~lvWP~l-------t~~--gs~~~~~qv 179 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSPDDSKQ--KKKTIYGLADTIDVLRKHVFNWLVWPNL-------TDS--GSGTYRMQV 179 (356)
T ss_pred hhhhheEeccccccchhceeecCcccccc--CCceEEechhHHHHHHHHhhcccccCCc-------ccc--cCceEEEEE
Confidence 46888999999999999873 22221 1346999999988876543222221111 111 111224566
Q ss_pred ecCCCeEEe--CCEEEEEEeCCCCC--C----cEEEEEEEC--CEEEEEEcCCCC
Q psy8348 126 INFHEEKDV--NGIKFSAYNAGHVL--G----AAMFLIEIA--GVKILYTGDFSR 170 (622)
Q Consensus 126 i~~~~~~~i--~gi~v~~~~aGH~~--G----s~~~~I~~~--~~~IlytGD~~~ 170 (622)
+.+.+...+ ..+++.+|+..|-. | |.+|++..+ ++-++|.||...
T Consensus 180 v~P~~~~slt~t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDvep 234 (356)
T COG5212 180 VRPAQSLSLTLTRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDVEP 234 (356)
T ss_pred eChhHeeeeeeeeecceeeeccCCcccCCcccceEEEEecCCCcceEEEecCCCc
Confidence 766665444 45677899988854 3 578888876 678999999864
No 54
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=96.63 E-value=0.0011 Score=62.61 Aligned_cols=120 Identities=16% Similarity=0.140 Sum_probs=69.5
Q ss_pred CCCCcEEEEEECCeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhHH
Q psy8348 10 EVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKA 89 (622)
Q Consensus 10 evG~sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~~ 89 (622)
..+-+|++...++.+||||.-.- +. ....++ .....++.|++||. ||+.......+. +.++||.+...++
T Consensus 20 n~dfng~~~~~p~GnilIDP~~l---s~-~~~~~l--~a~ggv~~IvLTn~--dHvR~A~~ya~~--~~a~i~~p~~d~~ 89 (199)
T PF14597_consen 20 NLDFNGHAWRRPEGNILIDPPPL---SA-HDWKHL--DALGGVAWIVLTNR--DHVRAAEDYAEQ--TGAKIYGPAADAA 89 (199)
T ss_dssp TEEEEEEEE--TT--EEES--------H-HHHHHH--HHTT--SEEE-SSG--GG-TTHHHHHHH--S--EEEEEGGGCC
T ss_pred ccCceeEEEEcCCCCEEecCccc---cH-HHHHHH--HhcCCceEEEEeCC--hhHhHHHHHHHH--hCCeeeccHHHHh
Confidence 34568999999999999996520 00 000011 13467999999975 699988876666 5789999987653
Q ss_pred HHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeCCEEEEEEeCCCCCCcEEEEEEECCEEEEEEcCCC
Q psy8348 90 IYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDFS 169 (622)
Q Consensus 90 i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~gi~v~~~~aGH~~Gs~~~~I~~~~~~IlytGD~~ 169 (622)
.. .++ .-..+..++ .-++|+++...+-.|++|..+++++. ++++|||.-
T Consensus 90 ~~------------------p~~---------~D~~l~dge-~i~~g~~vi~l~G~ktpGE~ALlled---~vLi~GDl~ 138 (199)
T PF14597_consen 90 QF------------------PLA---------CDRWLADGE-EIVPGLWVIHLPGSKTPGELALLLED---RVLITGDLL 138 (199)
T ss_dssp C-------------------SS-----------SEEE-TT--BSSTTEEEEEE-SSSSTTEEEEEETT---TEEEESSSE
T ss_pred hC------------------CCC---------CccccccCC-CccCceEEEEcCCCCCCceeEEEecc---ceEEeccee
Confidence 21 111 124556666 23589999998655999999999863 599999965
Q ss_pred C
Q psy8348 170 R 170 (622)
Q Consensus 170 ~ 170 (622)
.
T Consensus 139 ~ 139 (199)
T PF14597_consen 139 R 139 (199)
T ss_dssp E
T ss_pred e
Confidence 3
No 55
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=96.10 E-value=0.0055 Score=48.13 Aligned_cols=49 Identities=12% Similarity=0.393 Sum_probs=39.2
Q ss_pred cEEEEEECCeEEEE-eCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCc-hhhhcc
Q psy8348 14 SCIMLEFKNKSIMM-DCGIHPGLSGMDALPFVDLVESDQIDLLLISHFH-LDHCGA 67 (622)
Q Consensus 14 sc~lI~~~~~~ILi-D~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H-~DHigg 67 (622)
+|++|.+++++.|| +||- +.+..-.-..+...+++.||+|+.+ +|++||
T Consensus 13 p~l~l~~d~~rYlFGn~gE-----GtQR~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 13 PSLLLFFDSRRYLFGNCGE-----GTQRACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CEEEEEeCCceEEeccCCc-----HHHHHHHHcCCCccccceEEECCCCcccccCC
Confidence 89999999999999 9993 4332222234677899999999999 999987
No 56
>KOG3798|consensus
Probab=95.80 E-value=0.04 Score=54.61 Aligned_cols=156 Identities=15% Similarity=0.212 Sum_probs=85.7
Q ss_pred CCcEEEEEECCeEEEEeCCCC-------CCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEec
Q psy8348 12 GRSCIMLEFKNKSIMMDCGIH-------PGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMT 84 (622)
Q Consensus 12 G~sc~lI~~~~~~ILiD~G~~-------~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t 84 (622)
|.+|.++.++|-++|-|.=+. .|.+.+...|. ..-++.++|.+++||.|+||...-.. ..-.+...++...
T Consensus 87 g~a~~~~~~~g~~~~tdpvf~d~~if~s~gPkry~~pp~-~~~~~p~~d~~~vsh~h~dhld~~~~-~~~~~~~~~~wfv 164 (343)
T KOG3798|consen 87 GHATVLVDLEGVKFVTDPVWADRASFTSFGPKRYRPPPM-KLEDLPDLDFAVVSHDHYDHLDADAV-KKITDRNPQIWFV 164 (343)
T ss_pred cceeEEEeccCcEEecchhhccchhhcccCcccccCCch-hhccCCCCceeccccccccccchHHH-HhhhccCccceee
Confidence 789999999999888886532 11122222222 22367899999999999999865322 2223333333222
Q ss_pred hhhHHHHHHHHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEe--CC--EEEEEEeCCCCCC----------c
Q psy8348 85 HATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDV--NG--IKFSAYNAGHVLG----------A 150 (622)
Q Consensus 85 ~~t~~i~~~~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i--~g--i~v~~~~aGH~~G----------s 150 (622)
+..... ++.. .. | +....+..+++.++ ++ ++|.+.||-|.-+ -
T Consensus 165 p~g~k~--~m~~-----~g---------------c-~~v~el~wwe~~~~vkn~~~~ti~~tPaqHw~~R~L~D~Nk~LW 221 (343)
T KOG3798|consen 165 PLGMKK--WMEG-----DG---------------S-STVTELNWGESSEFVKNGKTYTIWCLPAQHWGQRGLFDRNKRLW 221 (343)
T ss_pred hhhhhh--eecC-----CC---------------C-CceeEeeccchhceecCCcEEEEEEcchhhhcccccccCCccee
Confidence 111100 0000 00 0 11222233333332 22 5777888888542 2
Q ss_pred EEEEEEECCEEEEEEcCCCCCccccc-cccCCCCCCCcEEEEccc
Q psy8348 151 AMFLIEIAGVKILYTGDFSRQEDRHL-MAAEIPPVKPDILITEST 194 (622)
Q Consensus 151 ~~~~I~~~~~~IlytGD~~~~~~~~l-~~a~~~~~~~DvLI~EsT 194 (622)
++|.+...+.+++|.||+++.++... ....+ .++|+..+-+.
T Consensus 222 ~sw~v~g~~nrfffaGDTGyc~~~F~~Igerf--GpfdLAaiPiG 264 (343)
T KOG3798|consen 222 SSWAVIGENNRFFFAGDTGYCDGEFKKIGERF--GPFDLAAIPIG 264 (343)
T ss_pred eeeEEecCCceEEecCCCCcccHHHHHHHHhc--CCcceeecccc
Confidence 56777777889999999999874322 22222 24676665543
No 57
>KOG4736|consensus
Probab=94.97 E-value=0.05 Score=55.27 Aligned_cols=116 Identities=19% Similarity=0.201 Sum_probs=69.1
Q ss_pred cEEEEEECCeEEEEeCCCCCCCCCCCCCCCCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCCCCeEEechhhHHHHHH
Q psy8348 14 SCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYRW 93 (622)
Q Consensus 14 sc~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~~~~Iy~t~~t~~i~~~ 93 (622)
+..++..++..+++|.|.. .+ ....+.+++|+.+.+||.|.+|+|.+-.+.. .++ +.+...-..
T Consensus 96 ~~tl~~d~~~v~v~~~gls-------~l-ak~~vt~d~i~~vv~t~~~~~hlgn~~~f~~-----sp~-l~~s~e~~g-- 159 (302)
T KOG4736|consen 96 QITLVVDGGDVVVVDTGLS-------VL-AKEGVTLDQIDSVVITHKSPGHLGNNNLFPQ-----SPI-LYHSMEYIG-- 159 (302)
T ss_pred ccceeecCCceEEEecCCc-------hh-hhcCcChhhcceeEEeccCcccccccccccC-----CHH-HhhhhhhcC--
Confidence 4456666778888998863 11 1234567899999999999999999765321 111 111110000
Q ss_pred HHHhHHhhhcccccccCCCHHHHHHhhcccEEecCCCeEEeC-CEEEEEEeCCCCCCcEEEEEEE--CCEEEEEEcCCCC
Q psy8348 94 LLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVN-GIKFSAYNAGHVLGAAMFLIEI--AGVKILYTGDFSR 170 (622)
Q Consensus 94 ~l~d~~~~~~~~~~~~ly~~~di~~~~~~i~~i~~~~~~~i~-gi~v~~~~aGH~~Gs~~~~I~~--~~~~IlytGD~~~ 170 (622)
..+.. ..++.++..+++ ++.++. .+||+.-+...++.. ..++++|+||+-.
T Consensus 160 ---------------r~~~p----------t~l~e~~~~~l~~~~~V~~-TpGht~~~isvlv~n~~~~GTv~itGDLf~ 213 (302)
T KOG4736|consen 160 ---------------RHVTP----------TELDERPYLKLSPNVEVWK-TPGHTQHDISVLVHNVDLYGTVAITGDLFP 213 (302)
T ss_pred ---------------CccCh----------hhhccCCccccCCceeEee-CCCCCCcceEEEEEeecccceEEEEeeccc
Confidence 00111 112233444554 445544 489999877777764 4589999999865
Q ss_pred C
Q psy8348 171 Q 171 (622)
Q Consensus 171 ~ 171 (622)
.
T Consensus 214 ~ 214 (302)
T KOG4736|consen 214 R 214 (302)
T ss_pred C
Confidence 3
No 58
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.06 E-value=0.04 Score=59.31 Aligned_cols=73 Identities=16% Similarity=0.203 Sum_probs=47.5
Q ss_pred CcEEEEEECCeEEEEeCCCCCCCCCCCCCC-CCCCCCCCCccEEEcCCCchhhhcchHHHHHhcCC---CCeEEechh
Q psy8348 13 RSCIMLEFKNKSIMMDCGIHPGLSGMDALP-FVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGF---KGRCFMTHA 86 (622)
Q Consensus 13 ~sc~lI~~~~~~ILiD~G~~~~~~~~~~lp-~~~~~~~~~Id~IlITH~H~DHiggLp~l~~~~~~---~~~Iy~t~~ 86 (622)
.|..+|+.+..+|+||+=..|.... .++. +........|.+|+-||+|.||.||+.-+...... +.+|.++..
T Consensus 126 sNITfveGdtg~IViDpL~t~~tA~-aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~iiAP~G 202 (655)
T COG2015 126 SNITFVEGDTGWIVIDPLVTPETAK-AALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGKVQIIAPAG 202 (655)
T ss_pred cceEEEcCCcceEEEcccCCcHHHH-HHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHcccCceeEecchh
Confidence 4778899899999999765432110 1111 11123456899999999999999998766543322 356666653
No 59
>KOG1137|consensus
Probab=89.72 E-value=1.6 Score=48.08 Aligned_cols=94 Identities=16% Similarity=0.115 Sum_probs=61.5
Q ss_pred cEecCCCCCCCCcE-EEEEECCeEEEEeCCCCCCC-C--CC-CCCCCCCC--CCCCCccEEEcCCCchhhhcchHHHHHh
Q psy8348 2 KTLKGAGQEVGRSC-IMLEFKNKSIMMDCGIHPGL-S--GM-DALPFVDL--VESDQIDLLLISHFHLDHCGALPWFLLK 74 (622)
Q Consensus 2 v~~LG~g~evG~sc-~lI~~~~~~ILiD~G~~~~~-~--~~-~~lp~~~~--~~~~~Id~IlITH~H~DHiggLp~l~~~ 74 (622)
+.|+++| +|+++| +++++.+ ..++++|..... + .. ...|.... +-..++-++.++|.|.||.|.++++...
T Consensus 153 f~p~~aG-hVlgacMf~veiag-v~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r~~re~rlt~vIh~ 230 (668)
T KOG1137|consen 153 FWPYHAG-HVLGACMFMVEIAG-VRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGRLTWVIHS 230 (668)
T ss_pred EEeeccc-hhhhheeeeeeece-EEEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEecCchHHhhhhhhhhHHh
Confidence 5788855 565555 5667755 577889964211 1 11 12332211 1134677899999999999999999887
Q ss_pred cCCC-----CeEEechhhHHHHHHHHHh
Q psy8348 75 TGFK-----GRCFMTHATKAIYRWLLSD 97 (622)
Q Consensus 75 ~~~~-----~~Iy~t~~t~~i~~~~l~d 97 (622)
+-.+ .|+|+...+.+++..+...
T Consensus 231 ~v~rGGR~L~PvFAlgrAqELllildey 258 (668)
T KOG1137|consen 231 TVPRGGRVLIPVFALGRAQELLLILDEY 258 (668)
T ss_pred hccCCCceEeeeeecchHHHHHHHHHHH
Confidence 7655 5789988888887654443
No 60
>KOG3592|consensus
Probab=84.39 E-value=0.6 Score=52.71 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=39.7
Q ss_pred EEEEEECCeEEEEeCCCCCCCCCCCCCCCCCCC-CCCCccEEEcCCCchhhhcchHHHHHh
Q psy8348 15 CIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLV-ESDQIDLLLISHFHLDHCGALPWFLLK 74 (622)
Q Consensus 15 c~lI~~~~~~ILiD~G~~~~~~~~~~lp~~~~~-~~~~Id~IlITH~H~DHiggLp~l~~~ 74 (622)
+-|.-++|.+||+|-|... .-+|+..+ ...+||+||+||.-.|..+|+..++++
T Consensus 50 aALFavnGf~iLv~Ggser------KS~fwklVrHldrVdaVLLthpg~dNLpginsllqr 104 (934)
T KOG3592|consen 50 AALFAVNGFNILVNGGSER------KSCFWKLVRHLDRVDAVLLTHPGADNLPGINSLLQR 104 (934)
T ss_pred ceeEeecceEEeecCCccc------ccchHHHHHHHhhhhhhhhcccccCccccchHHHHH
Confidence 3466678889999877521 12343333 467899999999999999999887764
No 61
>PRK00685 metal-dependent hydrolase; Provisional
Probab=78.47 E-value=4.3 Score=40.15 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=41.5
Q ss_pred ccCCCHHHHHHHHHHhCCCeEEEEcCCh-----HHHHHHHHHHHHhhcCCCCCceEEeeCCCCcEEEE
Q psy8348 382 SAHTDYQQTSEFVRELRPAHVVLVHGEQ-----NEMSRLKAALTREYEDDPNTSMELYNPRNTVSVDL 444 (622)
Q Consensus 382 S~Had~~el~~~i~~l~P~~VilvHGe~-----~~~~~l~~~l~~~~~~~~~~~~~v~~p~ng~~v~l 444 (622)
..|.+.+|..++.+.++|+.+||+|-.. .....+++.+++ ++ .++..|+.|+++++
T Consensus 168 ~~h~~~~ea~~~~~~~~~k~~v~~H~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~G~~~~~ 228 (228)
T PRK00685 168 NFTMGPEDAALAVELIKPKIVIPMHYNTFPLIEQDPEKFKALVEG-LG------TKVVILKPGESIEL 228 (228)
T ss_pred ccccCHHHHHHHHHhhCCCEEEEeccCCCcCCcCCHHHHHHHHHh-cC------CcEEECCCCCEeeC
Confidence 3589999999999999999999999642 123445554443 32 35788999998864
No 62
>PRK00055 ribonuclease Z; Reviewed
Probab=76.10 E-value=5.9 Score=40.15 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=45.9
Q ss_pred cccCCCHHHHHHHHHHhCCCeEEEEcCChHH---HHHHHHHHHHhhcCCCCCceEEeeCCCCcEEEEeec
Q psy8348 381 FSAHTDYQQTSEFVRELRPAHVVLVHGEQNE---MSRLKAALTREYEDDPNTSMELYNPRNTVSVDLYFK 447 (622)
Q Consensus 381 fS~Had~~el~~~i~~l~P~~VilvHGe~~~---~~~l~~~l~~~~~~~~~~~~~v~~p~ng~~v~l~~~ 447 (622)
..+|++.++..++.+.++|++++++|=.++. ...+.+.++..+ + ++.++..|.+++|+++
T Consensus 207 ~~~H~~~~~a~~~~~~~~~~~~vl~H~~~~~~~~~~~~~~~~~~~~---~----~v~~a~Dg~~i~l~~~ 269 (270)
T PRK00055 207 EYGHSTARQAAEIAKEAGVKRLILTHFSPRYTGDPEELLKEAREIF---P----NTELAEDLMRVEVPFR 269 (270)
T ss_pred hcCCCCHHHHHHHHHHcCCCEEEEEeeccccCCCHHHHHHHHHHHc---C----CcEEccCCcEEEecCC
Confidence 3789999999999999999999999976542 234444454444 1 3788999999999754
No 63
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=60.02 E-value=19 Score=35.51 Aligned_cols=85 Identities=13% Similarity=0.176 Sum_probs=50.7
Q ss_pred EEEEcCCCCCccccccccCCCCCCCcEEEEcccCCCCCCchhh-----hHHHHHHHHHHHHHHcCCeEEEeecccchHHH
Q psy8348 162 ILYTGDFSRQEDRHLMAAEIPPVKPDILITESTYGTHVHEQRE-----EREGRFTSLIHDIVNRGGRCLIPVFALGRAQE 236 (622)
Q Consensus 162 IlytGD~~~~~~~~l~~a~~~~~~~DvLI~EsTyg~~~~~~~~-----~~~~~~~~~i~~~l~~gg~vliP~falGR~qE 236 (622)
.++.||+...+.........+...+|+++++...-....+... .....+.+.+.++++.||++++-+|.-++.++
T Consensus 94 ~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~ 173 (209)
T PRK11188 94 DFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDE 173 (209)
T ss_pred EEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHH
Confidence 4667887643210000011223579999987532111011111 11134667778889999999999999999999
Q ss_pred HHHHHHHHHH
Q psy8348 237 LLLILDEYWS 246 (622)
Q Consensus 237 ll~iL~~~~~ 246 (622)
++..+..++.
T Consensus 174 ~l~~l~~~f~ 183 (209)
T PRK11188 174 YLREIRSLFT 183 (209)
T ss_pred HHHHHHhCce
Confidence 9888876654
No 64
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=56.27 E-value=11 Score=35.87 Aligned_cols=25 Identities=28% Similarity=0.627 Sum_probs=24.4
Q ss_pred ccCCCHHHHHHHHHHhCCCeEEEEc
Q psy8348 382 SAHTDYQQTSEFVRELRPAHVVLVH 406 (622)
Q Consensus 382 S~Had~~el~~~i~~l~P~~VilvH 406 (622)
+.|++.+++.++++.++|+++|++|
T Consensus 169 ~~h~~~~~~~~~~~~~~~~~~il~H 193 (194)
T PF12706_consen 169 PGHMTLEEALELAKELKAKKVILIH 193 (194)
T ss_dssp TTSBBHHHHHHHHHHHTTSEEEEES
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 8899999999999999999999999
No 65
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=55.82 E-value=15 Score=34.20 Aligned_cols=31 Identities=19% Similarity=0.433 Sum_probs=21.6
Q ss_pred EEEEeccc--CCCHHHHHHHHHHhCCCeEEEEc
Q psy8348 376 VDYISFSA--HTDYQQTSEFVRELRPAHVVLVH 406 (622)
Q Consensus 376 v~~i~fS~--Had~~el~~~i~~l~P~~VilvH 406 (622)
|--+++++ ..+.++..++++.++||.|||+|
T Consensus 131 vl~~p~~g~~~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 131 VLFLPVGGPFTMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp EEEEE--TTTS--HHHHHHHHHHCT-SEEEEES
T ss_pred EEEecCCCCcccCHHHHHHHHHHcCCCEEEeCC
Confidence 33445555 46889999999999999999999
No 66
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=43.18 E-value=35 Score=34.34 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=38.3
Q ss_pred ccCCCHHHHHHHHHHhCCCeEEEEcCChHHHHHHHHHHHHhhcCCCCCceEEeeCCCCcEEEE
Q psy8348 382 SAHTDYQQTSEFVRELRPAHVVLVHGEQNEMSRLKAALTREYEDDPNTSMELYNPRNTVSVDL 444 (622)
Q Consensus 382 S~Had~~el~~~i~~l~P~~VilvHGe~~~~~~l~~~l~~~~~~~~~~~~~v~~p~ng~~v~l 444 (622)
-+|++.++..++.+..+|++++++|=... +.+..... +.+. ..+.+++.|.++++
T Consensus 196 ~~H~~~~~a~~~a~~~~~k~lvltH~~~~-~~~~~~~~-~~~~------~~~~~a~DG~~i~~ 250 (250)
T PRK11244 196 RNHNDLTTALAIIEVLRPPRVILTHISHQ-LDAWLMEN-AALP------SGVEVAYDGMEIGL 250 (250)
T ss_pred CCCCCHHHHHHHHHhcCCceEEEEcccCC-cchhhhhh-hhcC------CceEEecCccEeeC
Confidence 46999999999999999999999997543 33221211 1121 13678888888764
No 67
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=42.79 E-value=44 Score=34.76 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=41.1
Q ss_pred ccCCCHHHHHHHHHHhCCCeEEEEcCChHH----HHHHHHHHHHhhcCCCCCceEEeeCCCCcEEE
Q psy8348 382 SAHTDYQQTSEFVRELRPAHVVLVHGEQNE----MSRLKAALTREYEDDPNTSMELYNPRNTVSVD 443 (622)
Q Consensus 382 S~Had~~el~~~i~~l~P~~VilvHGe~~~----~~~l~~~l~~~~~~~~~~~~~v~~p~ng~~v~ 443 (622)
.+|++..|..++.+..++++++|+|=.++. ..++.+..++.|. ++.+++.|.+++
T Consensus 244 ~~H~t~~~a~~~a~~~~~k~lvL~H~s~~y~~~~~~~~~~~~~~~~~-------~~~~a~d~~~~~ 302 (303)
T TIGR02649 244 RGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSIFP-------ATELANDFTVFN 302 (303)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEEEeccccCCccHHHHHHHHHHHCC-------CCEecccccEEe
Confidence 579999999999999999999999976532 3445455555452 257788888775
No 68
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=40.10 E-value=69 Score=29.07 Aligned_cols=39 Identities=31% Similarity=0.520 Sum_probs=29.3
Q ss_pred EecccCCCHHHHHHHHHHhCCCeEEEEcCChHHHHHHHHHH
Q psy8348 379 ISFSAHTDYQQTSEFVRELRPAHVVLVHGEQNEMSRLKAAL 419 (622)
Q Consensus 379 i~fS~Had~~el~~~i~~l~P~~VilvHGe~~~~~~l~~~l 419 (622)
+.+++|.+.+.|.+.+++.+|++|++.. ......++..+
T Consensus 28 ~~Lsa~~n~~~L~~q~~~f~p~~v~i~~--~~~~~~l~~~~ 66 (129)
T PF02670_consen 28 VALSAGSNIEKLAEQAREFKPKYVVIAD--EEAYEELKKAL 66 (129)
T ss_dssp EEEEESSTHHHHHHHHHHHT-SEEEESS--HHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHHhCCCEEEEcC--HHHHHHHHHHh
Confidence 5689999999999999999999988764 33344555544
No 69
>cd00559 Cyanase_C Cyanase C-terminal domain. Cyanase (Cyanate lyase) is responsible for the hydrolysis of cyanate. It catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide. This allows organisms that possess the enzyme to overcome the toxicity of environmental cyanate and to use cyanate as a source of nitrogen for growth. This enzyme is a homodecamer, formed by five dimers. Each monomer is composed of two domains, an N-terminal helix-turn-helix and this structurally unique C-terminal domain.
Probab=38.54 E-value=47 Score=26.43 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCCcccc-----------CCCCceEEEEECCe
Q psy8348 568 ECLIEILVEMYGEAAVPK-----------MFKGEKITITVDKK 599 (622)
Q Consensus 568 ~~~~~~~~~~fg~~~~~~-----------~~~~~~~~~~~~~~ 599 (622)
..+.+++.++|||-..+- .++++.+.|+.||+
T Consensus 20 ~~~K~li~E~FGDGIMSAIdF~~~v~k~~dp~gdRvvit~~GK 62 (69)
T cd00559 20 PTLKALIHEKFGDGIMSAIDFKLDVDKVEDPGGDRVVITLDGK 62 (69)
T ss_pred HHHHHHHHHHcCCceeeeEEeeeeEEeccCCCCCEEEEEEcce
Confidence 357889999999985431 12456777777776
No 70
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=37.62 E-value=84 Score=30.00 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=39.2
Q ss_pred CCCCcEEEEccc---CCCCC--CchhhhHHHHHHHHHHHHHHcCCeEEEeecccchHHHHHHHHHHH
Q psy8348 183 PVKPDILITEST---YGTHV--HEQREEREGRFTSLIHDIVNRGGRCLIPVFALGRAQELLLILDEY 244 (622)
Q Consensus 183 ~~~~DvLI~EsT---yg~~~--~~~~~~~~~~~~~~i~~~l~~gg~vliP~falGR~qEll~iL~~~ 244 (622)
..++|+++++.. .|... +....+....+.+.+.+.++.||++++-++...+.-+++..++..
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~ 162 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL 162 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh
Confidence 346999998753 12211 111122224566777888899999998777766766777666554
No 71
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=36.31 E-value=41 Score=33.49 Aligned_cols=53 Identities=15% Similarity=0.183 Sum_probs=36.1
Q ss_pred ccCCCHHHHHHHHHHhCCCeEEEEcCChHHHHHHHHHHHHhhcCCCCCceEEeeCCCCcEE
Q psy8348 382 SAHTDYQQTSEFVRELRPAHVVLVHGEQNEMSRLKAALTREYEDDPNTSMELYNPRNTVSV 442 (622)
Q Consensus 382 S~Had~~el~~~i~~l~P~~VilvHGe~~~~~~l~~~l~~~~~~~~~~~~~v~~p~ng~~v 442 (622)
..|++.++..++.+.++|+.+|++|=... +.++...... .. ..+++++.|+++
T Consensus 186 ~~H~~~~~~~~~~~~~~~~~lil~H~~~~-~~~~~~~~~~---~~----~~~~~a~DG~~~ 238 (238)
T TIGR03307 186 RNHNDLTRALAINEQLRPKQVILTHISHQ-LDAWLMENPD---LP----SGVAVGYDGQTL 238 (238)
T ss_pred CCcCCHHHHHHHHHHcCCCEEEEEecccc-cchHHHhhhh---cC----CceEEecccccC
Confidence 36999999999999999999999998654 3222111111 11 236777877653
No 72
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=34.59 E-value=75 Score=32.74 Aligned_cols=56 Identities=14% Similarity=0.297 Sum_probs=39.6
Q ss_pred ccCCCHHHHHHHHHHhCCCeEEEEcCChH--HHHHHHHHHHHhhcCCCCCceEEeeCCCCcEEEE
Q psy8348 382 SAHTDYQQTSEFVRELRPAHVVLVHGEQN--EMSRLKAALTREYEDDPNTSMELYNPRNTVSVDL 444 (622)
Q Consensus 382 S~Had~~el~~~i~~l~P~~VilvHGe~~--~~~~l~~~l~~~~~~~~~~~~~v~~p~ng~~v~l 444 (622)
.+|++.+|..++.+..++++++++|=.++ ....+.+...+.+. ++.....|..+++
T Consensus 242 ~~H~t~~~a~~~~~~~~~k~lvltH~s~~~~~~~~~~~~~~~~~~-------~~~~a~dg~~~~~ 299 (299)
T TIGR02651 242 YGHSTAAQAAEIAKEANVKRLILTHISPRYSDEEELLEEAKKIFP-------NTYIAEDFMEIEI 299 (299)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEEecccccCChHHHHHHHHHhCC-------CcEEccCccEeeC
Confidence 67999999999999999999999996543 22333333433331 3677788877753
No 73
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=31.94 E-value=1.2e+02 Score=29.94 Aligned_cols=86 Identities=15% Similarity=0.237 Sum_probs=53.8
Q ss_pred EEEEEcCCCCCccccccccCCCCCCCcEEEEcccCCCCCCc----hhhh-HHHHHHHHHHHHHHcCCeEEEeecccchHH
Q psy8348 161 KILYTGDFSRQEDRHLMAAEIPPVKPDILITESTYGTHVHE----QREE-REGRFTSLIHDIVNRGGRCLIPVFALGRAQ 235 (622)
Q Consensus 161 ~IlytGD~~~~~~~~l~~a~~~~~~~DvLI~EsTyg~~~~~----~~~~-~~~~~~~~i~~~l~~gg~vliP~falGR~q 235 (622)
-.++=||+...+........++...+|++++|..-...-+. .+.. -.....+...+.+..||..++.+|--+-..
T Consensus 87 V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~ 166 (205)
T COG0293 87 VIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFE 166 (205)
T ss_pred ceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHH
Confidence 44556888765544333333444457999998643222111 2211 112233444556789999999999999999
Q ss_pred HHHHHHHHHHH
Q psy8348 236 ELLLILDEYWS 246 (622)
Q Consensus 236 Ell~iL~~~~~ 246 (622)
+++..+..++.
T Consensus 167 ~~l~~~~~~F~ 177 (205)
T COG0293 167 DLLKALRRLFR 177 (205)
T ss_pred HHHHHHHHhhc
Confidence 99999987764
No 74
>PRK02113 putative hydrolase; Provisional
Probab=30.11 E-value=88 Score=31.33 Aligned_cols=55 Identities=11% Similarity=0.230 Sum_probs=38.5
Q ss_pred ccCCCHHHHHHHHHHhCCCeEEEEcCChHHHHHHHHHHHHhhcCCCCCceEEeeCCCCcEEEE
Q psy8348 382 SAHTDYQQTSEFVRELRPAHVVLVHGEQNEMSRLKAALTREYEDDPNTSMELYNPRNTVSVDL 444 (622)
Q Consensus 382 S~Had~~el~~~i~~l~P~~VilvHGe~~~~~~l~~~l~~~~~~~~~~~~~v~~p~ng~~v~l 444 (622)
.+|.+.++..++.+.++|++++++|=..+ +.. ...+.+.+. .+++....|.++++
T Consensus 198 ~~H~t~~~a~~~~~~~~~k~l~l~H~s~~-~~~-~~~~~~~~~------~~~~~A~Dg~~~~~ 252 (252)
T PRK02113 198 PTHQSLEEALENIKRIGAKETYLIHMSHH-IGL-HADVEKELP------PHVHFAYDGLEIIF 252 (252)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEEEccccc-chh-HHHHHHhCC------CCceeccCceEEeC
Confidence 57999999999999999999999995332 222 223444442 13667788877764
No 75
>PF02560 Cyanate_lyase: Cyanate lyase C-terminal domain; InterPro: IPR003712 Some bacteria can overcome the toxicity of environmental cyanate by hydrolysis of cyanate. This reaction is catalyzed by cyanate lyase (also known as cyanase) []. Cyanate lyase is found in bacteria and plants and catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide. The cyanate lyase monomer is composed of two domains. The N-terminal domain shows structural similarity to the DNA-binding alpha-helix bundle motif. The C-terminal domain has an 'open fold' with no structural homology to other proteins. The dimer structure reveals the C-terminal domains to be intertwined, and the decamer is formed by a pentamer of these dimers. The active site of the enzyme is located between dimers and is comprised of residues from four adjacent subunits of the homodecamer []. ; GO: 0008824 cyanate hydratase activity, 0009439 cyanate metabolic process; PDB: 2IV1_B 2IUO_A 2IVQ_B 1DW9_A 1DWK_E 2IVG_G 2IU7_J 2IVB_A.
Probab=29.18 E-value=46 Score=26.81 Aligned_cols=33 Identities=21% Similarity=0.433 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhCCCcccc-----------CCCCceEEEEECCeE
Q psy8348 568 ECLIEILVEMYGEAAVPK-----------MFKGEKITITVDKKK 600 (622)
Q Consensus 568 ~~~~~~~~~~fg~~~~~~-----------~~~~~~~~~~~~~~~ 600 (622)
..|.+++.++|||-..+- .++|+.+.|+.+|+-
T Consensus 24 ~~~K~li~E~FGDGIMSAIdF~~~v~k~~d~~GdRv~it~~GKf 67 (73)
T PF02560_consen 24 PAIKALIHEKFGDGIMSAIDFKMDVEKVEDPKGDRVVITMNGKF 67 (73)
T ss_dssp HHHHHHHHHHT-SEEEEEEEEEEEEEEEE-TTSEEEEEEEEEEE
T ss_pred HHHHHHHHHhhCcceEEEeeEEEEEEEeeCCCCCEEEEEEecee
Confidence 457889999999985441 134567777777653
No 76
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=26.25 E-value=54 Score=33.49 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=29.0
Q ss_pred EecccCCCHHHHHHHHHHhCCCeEEEEcCChHH
Q psy8348 379 ISFSAHTDYQQTSEFVRELRPAHVVLVHGEQNE 411 (622)
Q Consensus 379 i~fS~Had~~el~~~i~~l~P~~VilvHGe~~~ 411 (622)
-++|.|-..++..++++.++|+++++.|=....
T Consensus 207 gh~~~h~~~~~a~~~~~~~~~~rivLtHls~~~ 239 (269)
T COG1235 207 GHLSNHLSAEEALELIEKLKPKRLVLTHLSHKN 239 (269)
T ss_pred CCCCCchhHHHHHHHHHhCCcceEEEEecCCCC
Confidence 369999999999999999999999999876543
No 77
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=25.28 E-value=2.1e+02 Score=26.95 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCCeEEEeecccchHHHHHHHHHH
Q psy8348 208 GRFTSLIHDIVNRGGRCLIPVFALGRAQELLLILDE 243 (622)
Q Consensus 208 ~~~~~~i~~~l~~gg~vliP~falGR~qEll~iL~~ 243 (622)
..+.+.+.+.++.||++++........++++..|.+
T Consensus 120 ~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~ 155 (179)
T TIGR00537 120 DRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDE 155 (179)
T ss_pred HHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHh
Confidence 457777888899999988877766557777777765
No 78
>PRK02866 cyanate hydratase; Validated
Probab=21.72 E-value=1.1e+02 Score=28.50 Aligned_cols=31 Identities=29% Similarity=0.550 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCCccc-----------cCCCCceEEEEECCe
Q psy8348 569 CLIEILVEMYGEAAVP-----------KMFKGEKITITVDKK 599 (622)
Q Consensus 569 ~~~~~~~~~fg~~~~~-----------~~~~~~~~~~~~~~~ 599 (622)
-+.++..++|||-..+ ..++|+.+.|+.||+
T Consensus 99 ~~K~~i~E~FGDGIMSAIdf~~~v~k~~dp~Gdrv~it~~GK 140 (147)
T PRK02866 99 TLKALIHEKFGDGIMSAIDFKLDVDKVEDPKGDRVVITLDGK 140 (147)
T ss_pred HHHHHHHHHhCCceeeeeeeceeeeeccCCCCCEEEEEeccc
Confidence 3788899999998543 113466777777776
No 79
>KOG2862|consensus
Probab=20.68 E-value=1.8e+02 Score=30.62 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=31.6
Q ss_pred eeEEEE--ecccCCCHHHHHHHHHHhCCCeEEEEcCChH
Q psy8348 374 MSVDYI--SFSAHTDYQQTSEFVRELRPAHVVLVHGEQN 410 (622)
Q Consensus 374 ~~v~~i--~fS~Had~~el~~~i~~l~P~~VilvHGe~~ 410 (622)
++|+.+ ++-.|+.-+++.+=+..-+|+-|+++|||..
T Consensus 116 a~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsS 154 (385)
T KOG2862|consen 116 AEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSS 154 (385)
T ss_pred ceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCcc
Confidence 345544 7888999999999999999999999999975
No 80
>PF06288 DUF1040: Protein of unknown function (DUF1040); InterPro: IPR009383 This family consists of several bacterial YihD proteins of unknown function [].; PDB: 2KO6_A.
Probab=20.52 E-value=82 Score=26.07 Aligned_cols=20 Identities=40% Similarity=0.727 Sum_probs=18.0
Q ss_pred chHHHHHHHHHHHHHhCCCC
Q psy8348 232 GRAQELLLILDEYWSLHPEL 251 (622)
Q Consensus 232 GR~qEll~iL~~~~~~~~~l 251 (622)
.|.-|++++|..+|+++|++
T Consensus 4 hR~nELLELL~p~Wqk~pDL 23 (86)
T PF06288_consen 4 HRLNELLELLQPAWQKEPDL 23 (86)
T ss_dssp HHHHHHHHHTHHHHHSSTTS
T ss_pred chHHHHHHHhhHHHhcCCcc
Confidence 58899999999999999876
No 81
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=20.18 E-value=1.2e+02 Score=28.36 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=21.5
Q ss_pred HHHHHHHHHhCCCccc-----------cCCCCceEEEEECCe
Q psy8348 569 CLIEILVEMYGEAAVP-----------KMFKGEKITITVDKK 599 (622)
Q Consensus 569 ~~~~~~~~~fg~~~~~-----------~~~~~~~~~~~~~~~ 599 (622)
-+.+++.|+|||-..+ ..++|+.+.|+.||+
T Consensus 102 ~~K~~i~E~FGDGIMSAIdF~~~v~k~~dp~Gdrv~it~~GK 143 (150)
T TIGR00673 102 TLKAVVHEKFGDGIMSAIDFKLDVEKVADPGGERAVITLNGK 143 (150)
T ss_pred HHHHHHHHHhCcceeeeeeeceeeeeecCCCCCEEEEEeccc
Confidence 4788889999998543 113466777777776
Done!