RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8348
(622 letters)
>gnl|CDD|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold
involved in RNA processing [Translation, ribosomal
structure and biogenesis].
Length = 427
Score = 415 bits (1069), Expect = e-141
Identities = 165/439 (37%), Positives = 238/439 (54%), Gaps = 18/439 (4%)
Query: 6 GAGQEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHC 65
GA +EVGRSC++LE I++DCG+ PG P + ++D +L++H HLDH
Sbjct: 7 GAAREVGRSCVLLETGGTRILLDCGLFPG-DPSPERPLLP--PFPKVDAVLLTHAHLDHI 63
Query: 66 GALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIET 125
GALP+ + GF+G + T T A+ + LL D +K++ + Y+E D+E+ D I
Sbjct: 64 GALPYLVRN-GFEGPVYATPPTAALLKVLLGDSLKLAEGPDKP-PYSEEDVERVPDLIRP 121
Query: 126 INFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDFSRQEDRHLMAAEIPPVK 185
+ + E +V G+K + YNAGH+LG+A L+E+ G +ILYTGD R++DR L AE+PP
Sbjct: 122 LPYGEPVEVGGVKVTFYNAGHILGSAAILLEVDGGRILYTGDVKRRKDRLLNGAELPP-C 180
Query: 186 PDILITESTYGTHVHEQREEREGRFTSLIHDIVNRGGRCLIPVFALGRAQELLLILDEYW 245
D+LI ESTYG +H R+E E RF + + RGG LIP FALGRAQELLLIL E
Sbjct: 181 IDVLIVESTYGDRLHPNRDEVERRFIESVKAALERGGTVLIPAFALGRAQELLLILRELG 240
Query: 246 SLHPELHDIPIYYASSLAKKCMSVYQTYINAMNDRIRRQISINNPFVFKHISNLKGIDHF 305
D PIY +A+ ++ + I + + S +
Sbjct: 241 F----AGDYPIYVDGPIARVALAYAKYPIGLDLPDLLKVAESR---FRFVESRRNSMREG 293
Query: 306 EDIGPCVVMASPGMMQSGLSRELFEMWCTDAKNGVIIAGYCVEGTLAKTILSEPEEVIGM 365
D GP VV+A+PGM++ G SR + +D KN V++ GY EGTL + +L V
Sbjct: 294 IDKGPAVVLAAPGMLKGGRSRYYLKHLLSDEKNWVLLPGYQAEGTLGRVLLEGGTSVHIK 353
Query: 366 SGQRLPLKMSVDYISFSAHTDYQQTSEFVRELRPAHVVLVHGEQNEMSRLKAALTREYED 425
G + +K V+ + FSAH D + EF++++ P VVLVHGE + L+A L E
Sbjct: 354 -GIEIKVKARVEELDFSAHADGDELLEFIKDISPPKVVLVHGEPEYGAALRARLLEELIG 412
Query: 426 DPNTSMELYNPRNTVSVDL 444
EL P N +L
Sbjct: 413 IR----ELELPANGEEYEL 427
>gnl|CDD|188365 TIGR03675, arCOG00543, arCOG00543 universal archaeal
KH-domain/beta-lactamase-domain protein. This family of
proteins is universal in the archaea and consistsof an
N-terminal type-1 KH-domain (pfam00013) a central
beta-lactamase-domain (pfam00753) with a C-terminal
motif associated with RNA metabolism (pfam07521).
KH-domains are associated with RNA-binding, so taken
together, this protein is a likely metal-dependent
RNAase. This family was defined in as arCOG01782.
Length = 630
Score = 285 bits (732), Expect = 7e-88
Identities = 138/447 (30%), Positives = 243/447 (54%), Gaps = 22/447 (4%)
Query: 6 GAGQEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVES--DQIDLLLISHFHLD 63
G +EVGRS ++L +++DCG++ G G +A P++D+ E D++D ++I+H HLD
Sbjct: 181 GGFREVGRSALLLSTPESRVLLDCGVNVGADGDNAYPYLDVPEFQLDELDAVVITHAHLD 240
Query: 64 HCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKI 123
H G +P L K G+ G + T T+ + L DYI V+ ++ Y+ D+ +++
Sbjct: 241 HSGLVP-LLFKYGYDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHT 299
Query: 124 ETINFHEEKDVN-GIKFSAYNAGHVLGAAM--FLIEIAGVKILYTGDFSRQEDRHLMAAE 180
T+++ E D+ IK + YNAGH+LG+A+ I I+YTGDF ++ R L A
Sbjct: 300 ITLDYGEVTDIAPDIKLTFYNAGHILGSAIAHLHIGDGLYNIVYTGDFKYEKTRLLDPAV 359
Query: 181 IPPVKPDILITESTYGTH--VHEQREEREGRFTSLIHDIVNRGGRCLIPVFALGRAQELL 238
+ + LI ESTYG REE E ++++ + RGG+ LIPVFA+GRAQE++
Sbjct: 360 NKFPRVETLIMESTYGGRDDYQPSREEAEKELIKVVNETIKRGGKVLIPVFAVGRAQEVM 419
Query: 239 LILDEYWSLHPELHDIPIYYASSLAKKCMSVYQTYINAMNDRIRRQISIN--NPFVFKHI 296
L+L+E + ++P+Y + + +++ Y +N +R +I NPF+ +
Sbjct: 420 LVLEEAMR-KGLIPEVPVYL-DGMIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEIF 477
Query: 297 SNLKGIDHFEDI----GPCVVMASPGMMQSGLSRELFEMWCTDAKNGVIIAGYCVEGTLA 352
++G D +I P +++A+ GM+ G E F++ D +N ++ GY EGTL
Sbjct: 478 HRVEGSDERREIIESDEPAIILATSGMLNGGPVVEYFKLLAPDPRNSLVFVGYQAEGTLG 537
Query: 353 KTILSEPEEV-IGMSG--QRLPLKMSVDYIS-FSAHTDYQQTSEFVREL--RPAHVVLVH 406
+ I S E+ + G + + + M V+ I FS H+D +Q +VR + +P ++L H
Sbjct: 538 RRIQSGWREIPLTDDGKTETIKINMEVETIEGFSGHSDRRQLMNYVRRMQPKPEKILLNH 597
Query: 407 GEQNEMSRLKAALTREYEDDPNTSMEL 433
GE ++ L +++ ++++ + L
Sbjct: 598 GEPSKCLDLASSIYKKFKIETIAPKNL 624
>gnl|CDD|224696 COG1782, COG1782, Predicted metal-dependent RNase, consists of a
metallo-beta-lactamase domain and an RNA-binding KH
domain [General function prediction only].
Length = 637
Score = 278 bits (712), Expect = 7e-85
Identities = 151/463 (32%), Positives = 252/463 (54%), Gaps = 35/463 (7%)
Query: 6 GAGQEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVE--SDQIDLLLISHFHLD 63
G +EVGRS +++ +++DCG++ +G DA P++D+ E D++D ++I+H HLD
Sbjct: 187 GGFREVGRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLD 246
Query: 64 HCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKI 123
HCG LP L K G+ G + T T+ + L DYI+V+ + Y D+ K +
Sbjct: 247 HCGFLP-LLFKYGYDGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHT 305
Query: 124 ETINFHEEKDVN-GIKFSAYNAGHVLGAAM--FLIEIAGVKILYTGDFSRQEDRHLMAAE 180
T+++ E D+ I+ + YNAGH+LG+AM I I+YTGDF ++ R L A
Sbjct: 306 ITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGLYNIVYTGDFKFEKTRLLEPAN 365
Query: 181 IPPVKPDILITESTYGTH--VHEQREEREGRFTSLIHDIVNRGGRCLIPVFALGRAQELL 238
+ + LI ESTYG V REE E +I+D + RGG+ LIPVFA+GR+QE++
Sbjct: 366 NKFPRVETLIMESTYGGRDDVQPPREEAEKELIKVINDTLKRGGKVLIPVFAVGRSQEVM 425
Query: 239 LILDEYWSLHPELHDIPIYYASSLAKKCMSVYQTYINAMNDRIRRQI--SINNPF---VF 293
++L+E + ++P+ Y + + +++ Y +N +R +I NPF +F
Sbjct: 426 IVLEEAMR-KGLIPEVPV-YLDGMIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEIF 483
Query: 294 KHISNLKGIDHFEDI----GPCVVMASPGMMQSGLSRELFEMWCTDAKNGVIIAGYCVEG 349
K + G D ++I P +++A+ GM+ G E F+ D KN +I GY EG
Sbjct: 484 KRVE---GSDERQEIIESDEPAIILATSGMLNGGPVVEYFKHLAPDPKNTLIFVGYQAEG 540
Query: 350 TLAKTILSEPEEV--IGMSG--QRLPLKMSVDYIS-FSAHTDYQQTSEFVREL--RPAHV 402
TL + I S +E+ G G + + + M V+ I FS H+D +Q ++VR + +P +
Sbjct: 541 TLGRRIQSGAKEIPIPGEDGKTEVIKVNMEVETIEGFSGHSDRRQLMKYVRRMNPKPEKI 600
Query: 403 VLVHGEQNEMSRLKAALTREYEDDPNTSMELYNPRNTVSVDLY 445
+L HGE ++ L +++ R+++ +E Y P+N ++ L
Sbjct: 601 LLNHGEPSKCLDLASSIRRKFK------IETYAPKNLETIRLL 637
>gnl|CDD|214983 smart01027, Beta-Casp, Beta-Casp domain. The beta-CASP domain is
found C terminal to the beta-lactamase domain in
pre-mRNA 3'-end-processing endonuclease. The active site
of this enzyme is located at the interface of these two
domains.
Length = 126
Score = 148 bits (376), Expect = 2e-42
Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 6/127 (4%)
Query: 234 AQELLLILDEYWSLHPELHDIPIYYASSLAKKCMSVYQTYINAMNDRIRRQISI-NNPFV 292
QELLLIL+E W EL ++PIY S +A + +Y++Y M+D IR++ NPF
Sbjct: 1 TQELLLILEELWREG-ELPNVPIYLDSPMAARATEIYKSYPEWMSDEIRKRFEQGRNPFD 59
Query: 293 FKHISNLKGIDHFEDI----GPCVVMASPGMMQSGLSRELFEMWCTDAKNGVIIAGYCVE 348
FK++ +K ++ + + GP V++AS GM+ G SR + D +N VI+ GY E
Sbjct: 60 FKNLKFVKSLEESKRLNDYKGPKVIIASSGMLTGGRSRHYLKRLAPDPRNTVILTGYQAE 119
Query: 349 GTLAKTI 355
GTL + +
Sbjct: 120 GTLGRKL 126
>gnl|CDD|221184 pfam11718, CPSF73-100_C, Pre-mRNA 3'-end-processing endonuclease
polyadenylation factor C-term. This is the C-terminal
conserved region of the pre-mRNA 3'-end-processing of
the polyadenylation factor CPSF-73/CPSF-100 proteins.
The exact function of this domain is not known.
Length = 208
Score = 137 bits (348), Expect = 2e-37
Identities = 68/191 (35%), Positives = 99/191 (51%), Gaps = 37/191 (19%)
Query: 469 LSGIIVKRNFNYHLLAPSDLPKYTDLKASKIIQQQSVYYSGSISVLRSLISHLAGPVETL 528
+SG++VK++F+YHLLAPSDL +YTDL S I Q+QS+ ++GS+ +L+ + + G VE +
Sbjct: 5 VSGVLVKKDFDYHLLAPSDLREYTDLSTSTITQKQSIPFNGSLDLLKWHLEQMFGDVEEI 64
Query: 529 DEKR----LRAFACIEITLEKCI-VVLEWASNPISDMYADSLIS---------------- 567
E L CI + E V LEW SNP++DM ADS+I+
Sbjct: 65 SEDEGKAALIVMGCITVRYEPNGEVELEWESNPMNDMVADSVIAVLLSVESSPASVKLSS 124
Query: 568 -------------ECLIEILVEMYGEAAVPKMFKGEKITIT---VDKKKACIDLVDLSVQ 611
E L +L +G+ VP K + I + KKKA I+L L V+
Sbjct: 125 KICHKKSDEEEFIERLEMLLEAQFGDDCVPLKDKPKLPVILTVTIGKKKADINLETLKVE 184
Query: 612 CEDSKLKSTVQ 622
CED L+ V+
Sbjct: 185 CEDESLRERVE 195
>gnl|CDD|220932 pfam10996, Beta-Casp, Beta-Casp domain. The beta-CASP domain is
found C terminal to the beta-lactamase domain in
pre-mRNA 3'-end-processing endonuclease. The active site
of this enzyme is located at the interface of these two
domains.
Length = 124
Score = 129 bits (326), Expect = 2e-35
Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Query: 234 AQELLLILDEYWSLHPELHDIPIYYASSLAKKCMSVYQTYINAMNDRIRRQISINNPFVF 293
AQELLL+L+E W D+PIY S +A K +Y++Y ++D + + F F
Sbjct: 1 AQELLLLLEELWREG-IPKDVPIYLDSPMAIKATEIYKSYPEWLSDSAKEFLL-RGAFPF 58
Query: 294 KHISNLKGIDHFEDI----GPCVVMASPGMMQSGLSRELFEMWCTDAKNGVIIAGYCVEG 349
++ ++ +D +++ GP V++AS GM++ G S + D KN VI+ GY EG
Sbjct: 59 DNLKFVRSVDESKELNNLGGPKVIIASSGMLEGGRSLHYLKKLAPDPKNTVILTGYQAEG 118
Query: 350 TLAKTI 355
TL + +
Sbjct: 119 TLGRKL 124
>gnl|CDD|215023 smart01098, CPSF73-100_C, This is the C-terminal conserved region
of the pre-mRNA 3'-end-processing of the polyadenylation
factor CPSF-73/CPSF-100 proteins. The exact function of
this domain is not known.
Length = 212
Score = 105 bits (263), Expect = 7e-26
Identities = 62/188 (32%), Positives = 88/188 (46%), Gaps = 42/188 (22%)
Query: 469 LSGIIVKRNFNYHLLAPSDLPKYTDLKASKIIQQQSVYYSGSISVLRSL---------IS 519
+SGI+VK++FNY LL PSDL TDL S IIQ+Q++ S S+L L +
Sbjct: 5 ISGILVKKDFNYDLLLPSDLDLRTDLSTSTIIQRQTIPLPSSASLLLVLLELMFEFGFVE 64
Query: 520 HLAGPVETLDEKRLRAFACIEITLEKCIVVLEWASNPISDMYADSLI------------- 566
E ++ L + +T ++VLEW S+P++DM ADS
Sbjct: 65 EDVDEEEKKEKAALIVMGDVTVTYSGHMLVLEWESSPVNDMDADSDSAIILLISSEPSPA 124
Query: 567 ------------------SECLIEILVE-MYGEAAVPKMFKGEKITITVDKKKACIDLVD 607
E LIEIL++ +G+ V + +GE + +TVD K A IDL
Sbjct: 125 KVKSSSKSKHHHHNDEEFREKLIEILLKEQFGDGVV-NVEEGEDLKVTVDGKTANIDLET 183
Query: 608 LSVQCEDS 615
L V ED
Sbjct: 184 LKVVEEDD 191
>gnl|CDD|200373 TIGR04122, Xnuc_lig_assoc, putative exonuclease, DNA
ligase-associated. Members of this protein family
frequently are found annotated as a putative exonuclease
involved in mRNA processing. This protein is found,
exclusively in bacteria, associated with three other
proteins: an ATP-dependent DNA ligase, a helicase, and
putative phosphoesterase.
Length = 326
Score = 88.8 bits (221), Expect = 3e-19
Identities = 64/227 (28%), Positives = 92/227 (40%), Gaps = 53/227 (23%)
Query: 52 IDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLY 111
+D LI+H H DH + G G T T AI R L + I
Sbjct: 24 VDRALITHGHSDH--------ARWG-HGAYLATPETLAILRLRLGEDIA----------- 63
Query: 112 TESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDFSRQ 171
I+T+ + E +NG+K S + AGHVLG+A +E G + +GD+ R
Sbjct: 64 -----------IQTVAYGETIRINGVKVSLHPAGHVLGSAQVRLEYGGEVWVVSGDYKRA 112
Query: 172 EDRHLMAAEIPPVKPDILITESTYGTHVHEQREEREGRFTSLIHDIVNR------GGRC- 224
D E PV D ITE+T+G V E I I+ GR
Sbjct: 113 PDPTCAPFE--PVPCDTFITEATFGLPVFRWPPPAE-----EIAKILAWWAQNPEAGRAS 165
Query: 225 LIPVFALGRAQELLLILDEYWSLHPELHDIPIYYASSLAKKCMSVYQ 271
L+ +ALG+AQ +L +L +D PIY ++ +Y+
Sbjct: 166 LLGAYALGKAQRVLALLR-------AAYDRPIYLHGAVENLT-DLYR 204
>gnl|CDD|216099 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily.
Length = 148
Score = 65.8 bits (160), Expect = 9e-13
Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 17/161 (10%)
Query: 8 GQEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGA 67
VG + ++E ++++D G+ L + ++ ID ++++H H DH G
Sbjct: 1 LGGVGSNSYLVEGDGGAVLIDTGLGA--DDALLLLALLGLDPKDIDAIILTHAHADHIGG 58
Query: 68 LPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETIN 127
LP TG A + + E + ++
Sbjct: 59 LPELKEATGAPVVAAPEDAAALLRLG---------------LDDAELRKLVDVLPVDVDL 103
Query: 128 FHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDF 168
+ + G G ++ + G K+L+TGD
Sbjct: 104 EGGDGILGGGLLLFVTPHPGHGPGHVVVYLPGGKVLFTGDL 144
>gnl|CDD|214854 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily. Apart
from the beta-lactamases a number of other proteins
contain this domain. These proteins include
thiolesterases, members of the glyoxalase II family,
that catalyse the hydrolysis of S-D-lactoyl-glutathione
to form glutathione and D-lactic acid and a competence
protein that is essential for natural transformation in
Neisseria gonorrhoeae and could be a transporter
involved in DNA uptake. Except for the competence
protein these proteins bind two zinc ions per molecule
as cofactor.
Length = 177
Score = 65.7 bits (160), Expect = 2e-12
Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 20/172 (11%)
Query: 14 SCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLL 73
+ ++ +I++D G D L + + +ID ++++H H DH G LP L
Sbjct: 1 NSYLVRDDGGAILIDTGPGEA---EDLLAELKKLGPKKIDAIILTHGHPDHIGGLPELLE 57
Query: 74 KTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKD 133
G +A + L +L + T+ +E D
Sbjct: 58 APGAP-----VYAPEGTAELLK---------DLLALLGELGAEAEPAPPDRTLKDGDELD 103
Query: 134 VNGIKFSAYNA-GHVLGAAMFLIEIAGVKILYTGDFSRQEDRHLMAAEIPPV 184
+ G + + GH G+ + + KIL+TGD +
Sbjct: 104 LGGGELEVIHTPGHTPGSIVLYLP--EGKILFTGDLLFAGGDGRTLVDGGDA 153
>gnl|CDD|223668 COG0595, COG0595, mRNA degradation ribonucleases J1/J2
(metallo-beta-lactamase superfamily) [Translation,
ribosomal structure and biogenesis; Replication,
recombination and repair].
Length = 555
Score = 62.3 bits (152), Expect = 4e-10
Identities = 60/263 (22%), Positives = 99/263 (37%), Gaps = 68/263 (25%)
Query: 9 QEVGRSCIMLEFKNKSIMMDCGIH-PGLSGMDALPFVDLV---------ESDQIDLLLIS 58
E+G++ ++E+ + I++D G+ P D L VDL+ D++ + ++
Sbjct: 18 GEIGKNMYVVEYGDDIIILDAGLKFPE----DDLLGVDLIIPDFSYLEENKDKVKGIFLT 73
Query: 59 HFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEK 118
H H DH GALP+ L + +A+ L + IK L++
Sbjct: 74 HGHEDHIGALPYLL----KQVLFAPIYASP-----LTAALIK-------------EKLKE 111
Query: 119 SMDKIETINFHEEKDVNGIKF-----SAYNAGH-VLGAAMFLIEIAGVKILYTGDF---- 168
HE K + IKF + H + + +I+ I+YTGDF
Sbjct: 112 HGLFKNENELHEVKPGSEIKFGSFEVEFFPVTHSIPDSLGIVIKTPEGNIVYTGDFKFDP 171
Query: 169 ----SRQEDRHLMAAEIPPVKPDILITESTYGTHVHEQREEREG-------RFTSLIHDI 217
D + AEI LI++ST E G +L I
Sbjct: 172 TPVDGEPTDLARL-AEIGKEGVLALISDST--------NAENPGFTPSESEVGENLEDII 222
Query: 218 VNRGGRCLIPVFA--LGRAQELL 238
N GR ++ FA + R Q ++
Sbjct: 223 RNAKGRVIVTTFASNIERIQTII 245
>gnl|CDD|203663 pfam07521, RMMBL, RNA-metabolising metallo-beta-lactamase. The
metallo-beta-lactamase fold contains five sequence
motifs. The first four motifs are found in pfam00753 and
are common to all metallo-beta-lactamases. The fifth
motif appears to be specific to function. This entry
represents the fifth motif from metallo-beta-lactamases
involved in RNA metabolism.
Length = 43
Score = 54.0 bits (131), Expect = 9e-10
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 368 QRLPLKMSVDYISFSAHTDYQQTSEFVRELRPAHVVLVHGEQN 410
+ +P+K V+ + FS H D ++ E ++ L+P V+LVHGE
Sbjct: 1 EVIPVKARVETLHFSGHADQEELLELLKLLKPEKVILVHGEPR 43
>gnl|CDD|221727 pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain. This
family is part of the beta-lactamase superfamily and is
related to pfam00753.
Length = 197
Score = 54.8 bits (132), Expect = 1e-08
Identities = 41/201 (20%), Positives = 68/201 (33%), Gaps = 22/201 (10%)
Query: 23 KSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCF 82
I++D G PG + P +ID +L+SH H DH L +
Sbjct: 1 TRILIDPG--PGTRDLRQQPLAAPALLPRIDAVLLSHAHADHILGLLTLRELIKRLPKRL 58
Query: 83 MTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAY 142
+ + L + V +I I+ E+ +V G+ +A+
Sbjct: 59 PVYGPPGVAEDLRAPIFGV-----------LPLFPVFDIEIFEIDIGEDVEVGGLTITAF 107
Query: 143 NAGH----VLGAAMFLIEIAGVKILYTGDFSRQEDRHLMAAEIPPVKPDILITESTYGTH 198
H L F IE G KI Y+GD + L + D+LI ++T+
Sbjct: 108 PVQHGSGRYLLREGFRIETPGKKIYYSGD-TGYIPDLLAEIK----GADLLILDATFYDD 162
Query: 199 VHEQREEREGRFTSLIHDIVN 219
E R+ + +
Sbjct: 163 DEEPRKTARRMGHMTPEEALE 183
>gnl|CDD|224155 COG1234, ElaC, Metal-dependent hydrolases of the beta-lactamase
superfamily III [General function prediction only].
Length = 292
Score = 48.9 bits (117), Expect = 3e-06
Identities = 45/227 (19%), Positives = 77/227 (33%), Gaps = 53/227 (23%)
Query: 16 IMLEFKNKSIMMDCG-------IHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGAL 68
I+L + + + DCG + GL ID + I+H H DH L
Sbjct: 23 ILLRLEGEKFLFDCGEGTQHQLLRAGLPPRK------------IDAIFITHLHGDHIAGL 70
Query: 69 PWFLLKTGFKGRCFMTH------ATKAIYRWLLSDYIKVS----NISTEQMLYTESDLEK 118
P L+ F+GR + + L Y K++ E+ + LE
Sbjct: 71 PGLLVSRSFRGRREPLKIYGPPGIKEFVETSLRLSYSKLTYEIIGHEIEEDAFEVEALEL 130
Query: 119 SM------------DKIETINFHEEKDV-NGIKFSAYNAGH----VLGAAMFLIEI--AG 159
D+ + + K + G +A AGH + I G
Sbjct: 131 DHGVPALGYRIEEPDRPGRFDAEKLKGLPPGPLITALKAGHPVEERVITPADRIGEPRKG 190
Query: 160 VKILYTGDFSRQEDRHLMAAEIPPVKPDILITESTYGTHVHEQREER 206
++Y+GD ++ +A D+LI E+T+ + + E
Sbjct: 191 KSVVYSGDTRPCDELIDLAKGA-----DLLIHEATFEDDLEDLANEG 232
>gnl|CDD|234602 PRK00055, PRK00055, ribonuclease Z; Reviewed.
Length = 270
Score = 44.4 bits (106), Expect = 7e-05
Identities = 40/198 (20%), Positives = 68/198 (34%), Gaps = 35/198 (17%)
Query: 14 SCIMLEFKNKSIMMDCG-------IHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCG 66
S I+L + + DCG + G+ ID + I+H H DH
Sbjct: 21 SSILLRLGGELFLFDCGEGTQRQLLKTGIKPRK------------IDKIFITHLHGDHIF 68
Query: 67 ALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLY--TESDLEK--SMDK 122
LP L GR T + ++++ ++ + Y E D +K
Sbjct: 69 GLPGLLSTRSLSGR---TEPLTIYGPKGIKEFVETLLRASGSLGYRIAEKDKPGKLDAEK 125
Query: 123 IETINFHEEKDVNGIKFSA---YNAGHVLGAAMFL-IEIAGVKILYTGDFSRQEDRHLMA 178
++ + +K G ++ A L G K+ Y GD E +A
Sbjct: 126 LKALGVPPGPLFGKLKRGEDVTLEDGRIINPADVLGPPRKGRKVAYCGDTRPCEALVELA 185
Query: 179 AEIPPVKPDILITESTYG 196
D+L+ E+T+G
Sbjct: 186 KGA-----DLLVHEATFG 198
>gnl|CDD|233963 TIGR02651, RNase_Z, ribonuclease Z. Processing of the 3-prime
end of tRNA precursors may be the result of
endonuclease or exonuclease activity, and differs in
different species. Member of this family are
ribonuclease Z, a tRNA 3-prime endonuclease that
processes tRNAs to prepare for addition of CCA. In
species where all tRNA sequences already have the CCA
tail, such as E. coli, the need for such an enzyme is
unclear. Protein similar to the E. coli enzyme, matched
by TIGR02649, are designated ribonuclease BN
[Transcription, RNA processing].
Length = 299
Score = 44.9 bits (107), Expect = 7e-05
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 19/74 (25%)
Query: 14 SCIMLEFKNKSIMMDCG-------IHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCG 66
I L+ + + DCG + G+S M +ID + I+H H DH
Sbjct: 19 PSIALKLNGELWLFDCGEGTQRQMLRSGISPM------------KIDRIFITHLHGDHIL 66
Query: 67 ALPWFLLKTGFKGR 80
LP L F+GR
Sbjct: 67 GLPGLLSTMSFQGR 80
>gnl|CDD|223565 COG0491, GloB, Zn-dependent hydrolases, including glyoxylases
[General function prediction only].
Length = 252
Score = 44.4 bits (104), Expect = 8e-05
Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 15/163 (9%)
Query: 31 IHPGLSGMDALPFVDLVES--DQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATK 88
I GL DA ++ + + +D +L++H H DH G G
Sbjct: 40 IDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFGAA-PVIAPAEVP 98
Query: 89 AIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNA-GHV 147
+ R + V+ + + + D++ D+ G++ + GH
Sbjct: 99 LLLREEILRKAGVTAEAYAAPGASPLRALEDGDEL---------DLGGLELEVLHTPGHT 149
Query: 148 LGAAMFLIEIAGVKILYTGDFSRQEDRHLMAAEIPPVKPDILI 190
G +FL+E +L+TGD D + ++P L+
Sbjct: 150 PGHIVFLLE--DGGVLFTGDTLFAGDTGVGRLDLPGGDAAQLL 190
>gnl|CDD|225130 COG2220, COG2220, Predicted Zn-dependent hydrolases of the
beta-lactamase fold [General function prediction only].
Length = 258
Score = 41.4 bits (97), Expect = 7e-04
Identities = 22/158 (13%), Positives = 45/158 (28%), Gaps = 13/158 (8%)
Query: 12 GRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWF 71
G + ++E K I++D + S + + ID +LI+H H DH
Sbjct: 13 GHAAFLIETGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDD---- 68
Query: 72 LLKTGFKGRCFMTHATKAIYR--WLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFH 129
+ L V ++ + + ++ +H
Sbjct: 69 ---ETLIALRTNKAPVVVVPLGAGDLLIRDGVEAERVHELGWGDVIELGDLEITAVPAYH 125
Query: 130 EEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGD 167
++IE G ++ + GD
Sbjct: 126 VSARH----LPGRGIRPTGLWVGYVIETPGGRVYHAGD 159
>gnl|CDD|224158 COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase
superfamily II [General function prediction only].
Length = 259
Score = 40.8 bits (96), Expect = 0.001
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 12 GRSCIMLEFKNKSIMMDCGIHPG--LSGMDALPFVDLVESDQIDLLLISHFHLDHCGALP 69
G S + +E + I+ D G L L V+ ID +++SH H DH G LP
Sbjct: 22 GFSAL-VEDEGTRILFDTGTDSDVLLHNARLLG----VDLRDIDAVVLSHGHYDHTGGLP 76
Query: 70 WFLLKTGFKGRCFMTHATKAIYRWLLSD 97
+ L + + A ++ +
Sbjct: 77 YLLEENNPGIPVY---AHPDAFKAKIEV 101
>gnl|CDD|233071 TIGR00649, MG423, conserved hypothetical protein. Contains an
ATP-binding domain at the N-terminal end of the
protein. Possibly part of a superfamily of
beta-lactmases [Hypothetical proteins, Conserved].
Length = 422
Score = 40.4 bits (95), Expect = 0.002
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 6 GAGQEVGRSCIMLEFKNKSIMMDCGIH---PGLSGMD-ALP-FVDLVE-SDQIDLLLISH 59
G E+G++ ++E ++ ++ D GI + G+D +P F L E D++ + I+H
Sbjct: 7 GGLGEIGKNMYVVEIDDEIVIFDAGILFPEDEMLGVDGVIPDFTYLQENEDKVKGIFITH 66
Query: 60 FHLDHCGALPWFLLKT 75
H DH GA+P +LL
Sbjct: 67 GHEDHIGAVP-YLLHQ 81
>gnl|CDD|225212 COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase
superfamily) [General function prediction only].
Length = 293
Score = 38.9 bits (91), Expect = 0.006
Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 29/145 (20%)
Query: 51 QIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQML 110
++D L+++H DH G L +LK T ++ + ++ +
Sbjct: 90 KLDQLILTHPDADHIGGLD-EVLK---------TIKVPELW---IYAGSDSTSTFVLRDA 136
Query: 111 YTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAA------MFLIEIAGVKILY 164
K+ D + G+ F + + + + G L
Sbjct: 137 GIPVRSCKAGDSWQ---------WGGVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNSFLL 187
Query: 165 TGDFSRQEDRHLMAAEIPPVKPDIL 189
TGD + ++ L+ P ++ D+L
Sbjct: 188 TGDLEEKGEK-LLKKYGPDLRADVL 211
>gnl|CDD|222167 pfam13483, Lactamase_B_3, Beta-lactamase superfamily domain.
This family is part of the beta-lactamase superfamily
and is related to pfam00753.
Length = 158
Score = 35.6 bits (83), Expect = 0.023
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 11 VGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHC 65
+G S ++E K I+ D P L G P VD D++LISH H DH
Sbjct: 5 LGHSSFLIEGGGKRILTD----PFLVG-GRPPPVD------ADVVLISHAHDDHG 48
Score = 30.2 bits (69), Expect = 1.6
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 148 LGAAMFLIEIAGVKILYTGDFSRQEDRHLMAAEIPPVKPDILITESTYGTHVH 200
LG + FLIE G +IL D R PPV D+++ + H H
Sbjct: 5 LGHSSFLIEGGGKRILT--DPFLVGGR------PPPVDADVVLISHAHDDHGH 49
>gnl|CDD|234811 PRK00685, PRK00685, metal-dependent hydrolase; Provisional.
Length = 228
Score = 34.8 bits (81), Expect = 0.093
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 12 GRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCG 66
G S ++E K I++D P ++G + + +D +L++H H DH G
Sbjct: 7 GHSAFLIETGGKKILID----PFITGNPLAD-LKPEDVK-VDYILLTHGHGDHLG 55
>gnl|CDD|179371 PRK02113, PRK02113, putative hydrolase; Provisional.
Length = 252
Score = 34.4 bits (79), Expect = 0.12
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 13 RSCIMLEFKNKSIMMDCGIHPGL-SGMDALPFVDLVESDQIDLLLISHFHLDHCGAL 68
R+ ++E + I++DCG P M LPF +ID +LI+H H DH G L
Sbjct: 35 RTSALVETEGARILIDCG--PDFREQMLRLPF------GKIDAVLITHEHYDHVGGL 83
>gnl|CDD|235006 PRK02126, PRK02126, ribonuclease Z; Provisional.
Length = 334
Score = 34.5 bits (80), Expect = 0.15
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 20 FKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFL 72
F+ ++++ D G + LP +L+ +I + +SH H+DH L
Sbjct: 25 FERRALLFDLG------DLHHLPPRELL---RISHIFVSHTHMDHFIGFDRLL 68
>gnl|CDD|224156 COG1235, PhnP, Metal-dependent hydrolases of the beta-lactamase
superfamily I [General function prediction only].
Length = 269
Score = 34.0 bits (78), Expect = 0.18
Identities = 23/158 (14%), Positives = 40/158 (25%), Gaps = 21/158 (13%)
Query: 52 IDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQML- 110
+D +L++H H DH L S ++
Sbjct: 63 LDAILLTHEHSDHIQGLDDLRRAYTLPIYVN-------PGTLRASTSDRLLGGFPYLFRH 115
Query: 111 YTESDLEKSMDKIETINF---HEEKDVNG--IKFSAYNAGHVLGAAMFLIEIAGVKILYT 165
++ +E F H+ + G I + L G + Y
Sbjct: 116 PFPPFSLPAIGGLEVTPFPVPHDAIEPVGFVIIRTGRKLHGGTDIGYGLEWRIG-DVAYL 174
Query: 166 GD---FSRQEDRHLMAAEIPPVKPDILITESTYGTHVH 200
D F D L+ + P + I + H
Sbjct: 175 TDTELFPSNHDVELLDNGLYP----LDIKDRILPDPGH 208
>gnl|CDD|224972 COG2061, COG2061, ACT-domain-containing protein, predicted
allosteric regulator of homoserine dehydrogenase [Amino
acid transport and metabolism].
Length = 170
Score = 31.3 bits (71), Expect = 0.86
Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 350 TLAKTILSEPEE----VIGMSGQRLPLKMSVDYISFSAHTDYQQTSEFVRELRPAHVVLV 405
I+ EE +I G RL K V I HTD Q T + + + A VV +
Sbjct: 60 DKDAKIIRLLEEEGIIIIRFDGARLREKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDL 119
Query: 406 HGEQNEMSRLKAALTR-EYED 425
+ +A
Sbjct: 120 SLSMPGIEGESSARITIIAVG 140
>gnl|CDD|181084 PRK07688, PRK07688, thiamine/molybdopterin biosynthesis
ThiF/MoeB-like protein; Validated.
Length = 339
Score = 31.1 bits (71), Expect = 1.8
Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 97 DYIKVSNISTEQMLYTESDLEKSMDK 122
DY++ SN+ Q LYTESD++ ++ K
Sbjct: 57 DYVEWSNLQ-RQQLYTESDVKNNLPK 81
>gnl|CDD|225157 COG2248, COG2248, Predicted hydrolase (metallo-beta-lactamase
superfamily) [General function prediction only].
Length = 304
Score = 30.5 bits (69), Expect = 2.7
Identities = 35/156 (22%), Positives = 54/156 (34%), Gaps = 34/156 (21%)
Query: 53 DLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYI-----KVSNISTE 107
D++ ISH+H DH P+F A+ + + + NI+
Sbjct: 67 DVITISHYHYDH--HTPFFDGI---------YEASGETAKEIYKGKLLLLKHPTENINRS 115
Query: 108 QMLYTESDLEKSMDKIETINFHEEK--DVNG--IKFS--------AYNAGHVLGAAMFLI 155
Q LE D I + + K + G I+FS G+VL M +
Sbjct: 116 QRRRAYRFLESLKDIAREIEYADGKTFEFGGTVIEFSPPVPHGREGSKLGYVL---MVAV 172
Query: 156 EIAGVKILYTGDFSRQ-EDRHLMAAEIPPVKPDILI 190
I++ D D L I +PD+LI
Sbjct: 173 TDGKSSIVFASDVQGPINDEAL--EFILEKRPDVLI 206
>gnl|CDD|237023 PRK11921, PRK11921, metallo-beta-lactamase/flavodoxin
domain-containing protein; Provisional.
Length = 394
Score = 30.4 bits (69), Expect = 3.3
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Query: 44 VDLVESDQIDLLLISHFHLDHCGALPWFLLK 74
+DL D+ID ++ +H +DH GALP L+K
Sbjct: 65 IDL---DKIDYIVANHGEIDHSGALP-ELMK 91
>gnl|CDD|233133 TIGR00801, ncs2, uracil-xanthine permease. The Nucleobase:Cation
Symporter-2 (NCS2) Family (TC 2.A.40) Most of the
functionally characterized members of the NCS2 family
are transporters specific for nucleobases including both
purines and pyrimidines. However, two closely related
rat members of the family, SVCT1 and SVCT2, localized to
different tissues of the body, cotransport L-ascorbate
and Na+ with a high degree of specificity and high
affinity for the vitamin. The NCS2 family appears to be
distantly related to the NCS1 family (TC #2.A.39)
[Transport and binding proteins, Nucleosides, purines
and pyrimidines].
Length = 412
Score = 29.9 bits (68), Expect = 3.9
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 147 VLGAAMFL----IEIAGVKILYTGDFSRQEDRHLMAA 179
VLG A + I +G++IL + +R+++AA
Sbjct: 338 VLGGASIVMFGMIAASGIRILIRNKLDYRRNRNIIAA 374
>gnl|CDD|183052 PRK11244, phnP, carbon-phosphorus lyase complex accessory
protein; Provisional.
Length = 250
Score = 29.5 bits (67), Expect = 4.6
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 15 CIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDH 64
++EF ++D G+ P L + P + +L++H+H+DH
Sbjct: 39 SALIEFNGARTLIDAGL-PDL--AERFP------PGSLQQILLTHYHMDH 79
>gnl|CDD|163212 TIGR03307, PhnP, phosphonate metabolism protein PhnP. This
family of proteins found in operons encoding
phosphonate C-P lyase systems as is observed in E. coli
and is a member of the metallo-beta-lactamase
superfamily (pfam00753). As defined by this model, all
instances of this protein are associated with the C-P
lyase, but not all genomes containing the C-P lyase
system contain phnP.
Length = 238
Score = 29.3 bits (66), Expect = 5.1
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 15/57 (26%)
Query: 15 CIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVE---SDQIDLLLISHFHLDHCGAL 68
++EF ++D G+ DL E + +L++H+H+DH L
Sbjct: 29 SAVIEFNGARTLIDAGLT------------DLAERFPPGSLQAILLTHYHMDHVQGL 73
>gnl|CDD|184519 PRK14120, gpmA, phosphoglyceromutase; Provisional.
Length = 249
Score = 29.2 bits (66), Expect = 6.4
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 440 VSVDLYFKGEKTAKVMGELAVE-NLKPD 466
V VDL KGE AK GEL E + PD
Sbjct: 27 VDVDLTEKGEAEAKRGGELLAEAGVLPD 54
>gnl|CDD|241462 cd13308, PH_3BP2, SH3 domain-binding protein 2 Pleckstrin homology
(PH) domain. SH3BP2 (the gene that encodes the adaptor
protein 3BP2), HD, ITU, IT10C3, and ADD1 are located
near the Huntington's Disease Gene on Human Chromosome
4pl6.3. SH3BP2 lies in a region that is often missing in
individuals with Wolf-Hirschhorn syndrome (WHS). Gain of
function mutations in SH3BP2 causes enhanced B-cell
antigen receptor (BCR)-mediated activation of nuclear
factor of activated T cells (NFAT), resulting in a rare,
genetic disorder called cherubism. This results in an
increase in the signaling complex formation with Syk,
phospholipase C-gamma2 (PLC-gamma2), and Vav1. It was
recently discovered that Tankyrase regulates 3BP2
stability through ADP-ribosylation and ubiquitylation by
the E3-ubiquitin ligase. Cherubism mutations uncouple
3BP2 from Tankyrase-mediated protein destruction, which
results in its stabilization and subsequent
hyperactivation of the Src, Syk, and Vav signaling
pathways. SH3BP2 is also a potential negative regulator
of the abl oncogene. PH domains have diverse functions,
but in general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 113
Score = 27.7 bits (62), Expect = 8.0
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 257 YYASSLAKKCMSVYQTYINAMNDRIRRQISINNPFVFK--HISN 298
Y+ +S + K V+ +N N R + + FVFK H+S
Sbjct: 42 YFKNSQSAKPKGVF--SLNGYNRRAAEETTSKKKFVFKIIHLSK 83
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.400
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,706,769
Number of extensions: 3173406
Number of successful extensions: 2604
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2557
Number of HSP's successfully gapped: 43
Length of query: 622
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 519
Effective length of database: 6,369,140
Effective search space: 3305583660
Effective search space used: 3305583660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.8 bits)