RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8348
(622 letters)
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit;
metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J
recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10
PDB: 2i7v_A
Length = 459
Score = 677 bits (1750), Expect = 0.0
Identities = 361/442 (81%), Positives = 403/442 (91%)
Query: 6 GAGQEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHC 65
GAGQEVGRSCI+LEFK + IM+DCGIHPGL GMDALP++DL++ +IDLLLISHFHLDHC
Sbjct: 18 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHC 77
Query: 66 GALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIET 125
GALPWFL KT FKGR FMTHATKAIYRWLLSDY+KVSNIS + MLYTE+DLE+SMDKIET
Sbjct: 78 GALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIET 137
Query: 126 INFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDFSRQEDRHLMAAEIPPVK 185
INFHE K+V GIKF Y+AGHVLGAAMF+IEIAGVK+LYTGDFSRQEDRHLMAAEIP +K
Sbjct: 138 INFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIK 197
Query: 186 PDILITESTYGTHVHEQREEREGRFTSLIHDIVNRGGRCLIPVFALGRAQELLLILDEYW 245
PDILI ESTYGTH+HE+REERE RF + +HDIVNRGGR LIPVFALGRAQELLLILDEYW
Sbjct: 198 PDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYW 257
Query: 246 SLHPELHDIPIYYASSLAKKCMSVYQTYINAMNDRIRRQISINNPFVFKHISNLKGIDHF 305
HPELHDIPIYYASSLAKKCM+VYQTY+NAMND+IR+QI+INNPFVFKHISNLK +DHF
Sbjct: 258 QNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHF 317
Query: 306 EDIGPCVVMASPGMMQSGLSRELFEMWCTDAKNGVIIAGYCVEGTLAKTILSEPEEVIGM 365
+DIGP VVMASPGMMQSGLSRELFE WCTD +NGVIIAGYCVEGTLAK I+SEPEE+ M
Sbjct: 318 DDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTM 377
Query: 366 SGQRLPLKMSVDYISFSAHTDYQQTSEFVRELRPAHVVLVHGEQNEMSRLKAALTREYED 425
SGQ+LPLKMSVDYISFSAHTDYQQTSEF+R L+P HV+LVHGEQNEM+RLKAAL REYED
Sbjct: 378 SGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYED 437
Query: 426 DPNTSMELYNPRNTVSVDLYFK 447
+ +E++NPRNT +V L F+
Sbjct: 438 NDEVHIEVHNPRNTEAVTLNFR 459
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease,
hydrolase, metal- nuclease, RNA-binding, rRNA
processing; HET: FLC; 2.05A {Thermus thermophilus} PDB:
2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A*
2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Length = 431
Score = 571 bits (1474), Expect = 0.0
Identities = 115/445 (25%), Positives = 210/445 (47%), Gaps = 26/445 (5%)
Query: 6 GAGQEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHC 65
GA +EV S +L + +++DCG+ G + ++D +L++H HLDH
Sbjct: 7 GAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTHAHLDHV 65
Query: 66 GALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIET 125
G LP L + G++G + T AT + +L D +KV ++ + D+E+++ +
Sbjct: 66 GRLPK-LFREGYRGPVYATRATVLLMEIVLEDALKVM----DEPFFGPEDVEEALGHLRP 120
Query: 126 INFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDFSRQEDRHLMAAEIPPVK 185
+ + E + + + AGH+ G+A + + G ++Y+GD +E L +PP
Sbjct: 121 LEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPP-L 179
Query: 186 PDILITESTYGTHVHEQREEREGRFTSLIHDIVNRGGRCLIPVFALGRAQELLLILDEYW 245
D+++ E TYG H E F ++ +++GG+ LIP FA+ RAQE+L +L +
Sbjct: 180 ADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHG 239
Query: 246 SLHPELHDIPIYYASSLAKKCMSVYQTYINAMNDRIRRQI-SINNPFVFKHISNLKGIDH 304
P PIY S +A + +S+Y + ++ ++ NPF + ++ +
Sbjct: 240 HRLP---RAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEA 296
Query: 305 FEDI----GPCVVMASPGMMQSGLSRELFEMWCTDAKNGVIIAGYCVEGTLAKTILSEPE 360
+ + GP VV+A GM+ G + +D +N ++ GY +G L I++ P
Sbjct: 297 SKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPP 356
Query: 361 EVIGMSGQRLPLKMSVDYI-SFSAHTDYQQTSEFVRELRPAHVVLVHGEQNEMSRLKAAL 419
V + G+ +PL+ SV + FS H + ++++ VVLVHGE+ ++ L L
Sbjct: 357 AV-RILGEEVPLRASVHTLGGFSGHAGQDELLDWLQ--GEPRVVLVHGEEEKLLALGKLL 413
Query: 420 TREYEDDPNTSMELYNPRNTVSVDL 444
E+ R V +
Sbjct: 414 ALRG-------QEVSLARFGEGVPV 431
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp
family, KH domain, ribonuclease, ME beta-lactamase
superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB:
3af6_A*
Length = 651
Score = 561 bits (1447), Expect = 0.0
Identities = 132/465 (28%), Positives = 230/465 (49%), Gaps = 35/465 (7%)
Query: 6 GAGQEVGRSCIMLEFKNKSIMMDCGIHPGL--SGMDALPFVDL------VESDQIDLLLI 57
G +EVGRS ++++ +++D G++ + A P D + +D ++I
Sbjct: 195 GGFREVGRSALLVQTDESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREGLLDAIII 254
Query: 58 SHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLE 117
+H HLDHCG LP+ F G + T T+ + L D+I++ + + LY D++
Sbjct: 255 THAHLDHCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIK 314
Query: 118 KSMDKIETINFHEEKDVN-GIKFSAYNAGHVLGAAMFLIEIAG--VKILYTGDFSRQEDR 174
+ + T+++ E +D++ I+ + +NAGH+LG+A+ + I I TGDF R
Sbjct: 315 EVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKFIPTR 374
Query: 175 HLMAAEIPPVKPDILITESTYG--THVHEQREEREGRFTSLIHDIVNRGGRCLIPVFALG 232
L A + + L+ ESTYG + REE E R +IH+ + RGG+ LIP A+G
Sbjct: 375 LLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHNTIKRGGKVLIPAMAVG 434
Query: 233 RAQELLLILDEYWSLHPELHDIPIYYASSLAKKCMSVYQTYINAMNDRIRRQI--SINNP 290
RAQE++++L+EY + ++PIY + + +++ Y ++ R+R QI NP
Sbjct: 435 RAQEVMMVLEEYARIGG--IEVPIYL-DGMIWEATAIHTAYPEYLSRRLREQIFKEGYNP 491
Query: 291 FVFKHISNLKGIDHFEDI----GPCVVMASPGMMQSGLSRELFEMWCTDAKNGVIIAGYC 346
F+ + + +DI P +++AS GM+ G S E F+ D KN +I Y
Sbjct: 492 FLSEIFHPVANSRERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQ 551
Query: 347 VEGTLAKTILSEPEEV----IGMSGQRLPLKMSVDYIS-FSAHTDYQQTSEFVREL--RP 399
EGTL + + S E+ + + + M V I FS H D ++ +V ++ RP
Sbjct: 552 AEGTLGRQVQSGIREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAKVRPRP 611
Query: 400 AHVVLVHGEQNEMSRLKAALTREYEDDPNTSMELYNPRNTVSVDL 444
++ VHGE + L ++ R++ + P N ++ L
Sbjct: 612 ERIITVHGEPQKCLDLATSIHRKF------GISTRAPNNLDTIRL 650
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor;
hydrolase, KH, metallo-beta-lactamase; 3.10A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 636
Score = 553 bits (1428), Expect = 0.0
Identities = 133/459 (28%), Positives = 241/459 (52%), Gaps = 29/459 (6%)
Query: 6 GAGQEVGRSCIMLEFKNKSIMMDCGIHPG-LSGMDALPFVDLVESD--QIDLLLISHFHL 62
G +EVGRSC+ L+ N +++DCG++ ++ P++++ E +D ++I+H HL
Sbjct: 186 GGFREVGRSCLYLQTPNSRVLLDCGVNVAGGDDKNSYPYLNVPEFTLDSLDAVIITHAHL 245
Query: 63 DHCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDK 122
DH G LP+ L G+ G + T T+ + L D+I +++ E + + ++KS+
Sbjct: 246 DHSGFLPY-LYHYGYDGPVYCTAPTRDLMTLLQLDHIDIAHREDEPLPFNVKHVKKSVKH 304
Query: 123 IETINFHEEKDVN-GIKFSAYNAGHVLGAAMFLIEIAGV--KILYTGDFSRQEDRHLMAA 179
T+++ E D+ I+ + +NAGH+LG+AM + I ++YTGDF ++ R L AA
Sbjct: 305 TITLDYGEVTDIAPDIRLTLHNAGHILGSAMAHLHIGDGQHNMVYTGDFKYEQSRLLEAA 364
Query: 180 EIPPVKPDILITESTYG--THVHEQREEREGRFTSLIHDIVNRGGRCLIPVFALGRAQEL 237
+ + L+ ESTYG V R E I+ + RGG+ LIPVFA+GRAQEL
Sbjct: 365 ANRFPRIETLVMESTYGGHEDVQPSRNRAEKELVKTIYSTLRRGGKILIPVFAVGRAQEL 424
Query: 238 LLILDEYWSLHPELHDIPIYYASSLAKKCMSVYQTYINAMNDRIRRQI--SINNPFVFKH 295
+++L+EY + ++P+Y + + +++ ++ +R QI +NPF+
Sbjct: 425 MIVLEEYIR-TGIIDEVPVYI-DGMIWEANAIHTARPEYLSKDLRDQIFHMGHNPFISDI 482
Query: 296 ISNLKGIDHFEDI---GPCVVMASPGMMQSGLSRELFEMWCTDAKNGVIIAGYCVEGTLA 352
+ G+D +I P +++++ GM+ G S E F+ C D N ++ GY EG+L
Sbjct: 483 FHKVNGMDERREIVEGEPSIILSTSGMLTGGNSLEYFKWLCEDPDNSLVFVGYQAEGSLG 542
Query: 353 KTILSEPEEV----IGMSGQRLPLKMSVDYIS-FSAHTDYQQTSEFVREL--RPAHVVLV 405
+ I +E+ + ++M++ I FS H+D +Q E+V+ + +P ++L
Sbjct: 543 RRIQKGWKEIPLKDEDDKMRVYNVRMNIKTIEGFSGHSDRRQLMEYVKRISPKPEKILLC 602
Query: 406 HGEQNEMSRLKAALTREYEDDPNTSMELYNPRNTVSVDL 444
HG+ + L +++ R Y +E P N +V +
Sbjct: 603 HGDNYKTLDLASSIYRTYR------IETKTPLNLETVRI 635
Score = 28.4 bits (64), Expect = 7.9
Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 15/102 (14%)
Query: 108 QMLYTESDLEKS-MDKI-ETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILY- 164
+ L S K + ++ I+ + D + + +A +G + ++ ++L
Sbjct: 149 RTLRKNSKERKKILQQLGNRIHQKPKYDNDWARLTAMGGFREVGRSCLYLQTPNSRVLLD 208
Query: 165 TGDF--SRQEDRHLMAAEIPPVKPD----ILITESTYGTHVH 200
G + +P D ++I TH H
Sbjct: 209 CGVNVAGGDDKNSYPYLNVPEFTLDSLDAVII------THAH 244
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit;
hydrolase, metallo-beta-lactamase, beta-CAsp, RNA
processing; 2.59A {Methanosarcina mazei}
Length = 640
Score = 552 bits (1424), Expect = 0.0
Identities = 122/460 (26%), Positives = 235/460 (51%), Gaps = 31/460 (6%)
Query: 6 GAGQEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDL---VESDQIDLLLISHFHL 62
G +EVGRSC +L I++DCG++ G S + P++ + +QID ++++H HL
Sbjct: 190 GGCKEVGRSCFLLSTPESRILIDCGVNVG-SDENMTPYLYVPEVFPLNQIDAVIVTHAHL 248
Query: 63 DHCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDK 122
DH G +P L K G++G + T T+ + L DYI V+ +++ Y + K++
Sbjct: 249 DHQGLVPL-LFKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESGMVAKTLKH 307
Query: 123 IETINFHEEKDVN-GIKFSAYNAGHVLGAAMFLIEIA--GVKILYTGDFSRQEDRHLMAA 179
+++ E D+ IK + +NAGH+LG+A+ I +++TGD+ ++ R A
Sbjct: 308 TIPLDYEEVTDIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVVFTGDYKYEKTRLFDPA 367
Query: 180 EIPPVKPDILITESTYG--THVHEQREEREGRFTSLIHDIVNRGGRCLIPVFALGRAQEL 237
+ + +I+E+TYG ++ E ++ + + RGG +IP FA+GR+QE+
Sbjct: 368 VNKFPRVETVISEATYGNANAFQPALKDAEKHLQMVVKNTIERGGIAVIPAFAVGRSQEV 427
Query: 238 LLILDEYWSLHPELHDIPIYYASSLAKKCMSVYQTYINAMNDRIRRQI--SINNPFVFKH 295
+++L+E + ++P+Y + + +++ T+ +N+ +R+ I NPF+ +
Sbjct: 428 MIVLEESIRKG-LIPEVPVYL-DGMIWEATAIHATHPEYLNNDLRKLIFQKGQNPFLSEC 485
Query: 296 ISNLKGIDH----FEDIGPCVVMASPGMMQSGLSRELFEMWCTDAKNGVIIAGYCVEGTL 351
+ + ++ PCV++A+ GMM G E F+ + D +N ++ GY +GT+
Sbjct: 486 FKPVDSHEARQKIIQNPQPCVILATSGMMNGGPVMEYFKAFAEDPRNTLVFVGYQADGTI 545
Query: 352 AKTILSEPEEV----IGMSGQRLPLKMSVDYIS-FSAHTDYQQTSEFVREL--RPAHVVL 404
+ I +E+ S + L + M V + FS H+D +Q E+V+ + RP V
Sbjct: 546 GRRIQKGWKEIPMTGKNGSTEMLKMNMEVQVVDGFSGHSDRRQLMEYVKRMQPRPERVFT 605
Query: 405 VHGEQNEMSRLKAALTREYEDDPNTSMELYNPRNTVSVDL 444
HG++ L +++ ++ + +E N +V L
Sbjct: 606 EHGDEKACVDLASSVYKKLK------IETRALTNLETVRL 639
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 411 bits (1056), Expect = e-135
Identities = 76/530 (14%), Positives = 170/530 (32%), Gaps = 49/530 (9%)
Query: 6 GAGQEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHC 65
G+G VG ++ F N ++++D G +P + +ID++++S ++
Sbjct: 11 GSGTTVGS---VVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECL 67
Query: 66 GALPW----FLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTE--QMLYTESDLEKS 119
GA F + + + T + R D + + D+E S
Sbjct: 68 GAHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEIS 127
Query: 120 MDKIETINFHEEKDV----NGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDFSRQEDRH 175
D I + + + D+ +G+ AYNAG G +++ I K++Y ++ D
Sbjct: 128 FDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNI 187
Query: 176 LMAAEIPP---------VKPDILITESTYGTHVHEQREEREGRFTSLIHDIVNRGGRCLI 226
L AA I ++P +IT + + ++R F + ++ G +I
Sbjct: 188 LNAASILDATGKPLSTLMRPSAIIT-TLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVII 246
Query: 227 PVFALGRAQELLLILDEYWSLHPELH---DIPIYYASSLAKKCMSVYQTYINAMNDRIRR 283
PV G+ +L + E +++ +P+ S + ++ ++ + ++ + +
Sbjct: 247 PVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLK 306
Query: 284 QISI---NNPFVFKHISNLKGIDHFEDI-GPCVVMASPGMMQSGLSRELFEMWCTDAKNG 339
+PF + + G + S L E+ K
Sbjct: 307 TWENRNNTSPFEIGSRIKIIAPNELSKYPGSKICFVSE---VGALINEVIIKVGNSEKTT 363
Query: 340 VIIAGYCVEGTLAKTILSEPEEVIGMSGQRLPLKMSVDYISFSAH--------------T 385
+I+ E + + E E + + P
Sbjct: 364 LILTKPSFECASSLDKILEIVEQDERNWKTFPEDGKSFLCDNYISIDTIKEEPLSKEETE 423
Query: 386 DYQQTSEFVRELRPAHVVLVHGEQNEMSRLKAALTREYEDDPNTSMELYNPRNTVSVDLY 445
++ + + R ++LV E +++ A + + + ++ +
Sbjct: 424 AFKVQLKEKKRDRNKKILLVKRESKKLANGNAIIDDTNGERAMRNQDILVENVNGVPPI- 482
Query: 446 FKGEKTAKVMGELAVENLKPDAALSGIIVKRNFNYHLLAPSDLPKYTDLK 495
+ EN L K + P D+
Sbjct: 483 -DHIMGGDEDDDEEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAA 531
Score = 34.4 bits (78), Expect = 0.11
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 368 QRLPLKMSVDYISFSAHTDYQQTSEFVRELRPAHVVLVHGEQNEMSRLKAALTREYEDDP 427
+ LK SV ++ + D + S L+ +VL +Q + + A L
Sbjct: 647 VNVQLKCSVVILNLQSLVDQRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLI------- 699
Query: 428 NTSMELYNPRNTVSVD 443
++E+ N V+
Sbjct: 700 KKNIEVVNMPLNKIVE 715
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 79.3 bits (195), Expect = 2e-15
Identities = 102/577 (17%), Positives = 175/577 (30%), Gaps = 174/577 (30%)
Query: 55 LLISHFHLDHCGALP---WFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLY 111
L +SH L+H +P +F A++ L + K+ TE
Sbjct: 9 LTLSHGSLEHVLLVPTASFF-------------IASQ-----LQEQFNKILPEPTEGF-- 48
Query: 112 TESDLEKSMDKIE-TINF--HEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDF 168
+D E + E F + V K ++ VL L E + +
Sbjct: 49 -AADDEPT-TPAELVGKFLGYVSSLVEPSKVGQFD--QVLNLC--LTE-------FENCY 95
Query: 169 SRQEDRHLMAAEIPPVKPDIL-----ITESTYGTHVHEQREEREGRFTSLIHDIVNRGGR 223
D H +AA++ L + ++ + +R + ++L V G
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA-VGEGNA 154
Query: 224 CLIPVFALGRAQELLLILDEYWSLHPELHDIPIYYASSLAKKCMSVYQTY-------INA 276
L+ +F G Q D+Y+ EL D+ YQTY I
Sbjct: 155 QLVAIFG-G--QG---NTDDYF---EELRDL---------------YQTYHVLVGDLIKF 190
Query: 277 MNDRIRR--QISINNPFVFKHISNLKG-IDHFEDIGPCVVMAS-----P--GMMQ----- 321
+ + + +++ VF N+ +++ + + S P G++Q
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
Query: 322 -----SGLS-RELFEM--WCTDAKNGVIIAGYCVEGT-------LAKTILSEPEEV---I 363
G + EL T G++ A E + + V I
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI----TVLFFI 306
Query: 364 GMSGQRLPLKMSVDYISFSAHTDYQQTSEFVRELRPAHVVLVHG-EQNEMSRLKAALTRE 422
G+ + S D + +E V P+ ++ + Q ++
Sbjct: 307 GVRCYEA---YPNTSLPPSILEDSLENNEGV----PSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 423 YEDDPNTSMELYN-PRNTV----SVDLYFKGEKTAKVMG-ELAVENLKPDAAL--SGI-- 472
+ L N +N V LY G L + K + L S I
Sbjct: 360 LPAGKQVEISLVNGAKNLVVSGPPQSLY----------GLNLTLRKAKAPSGLDQSRIPF 409
Query: 473 ------IVKRNFN-----YH--LLAPSDLPKYTDLKASKIIQQQSVYYSGSISVLRSLIS 519
R F +H LL P AS +I + V + S +
Sbjct: 410 SERKLKFSNR-FLPVASPFHSHLLVP----------ASDLINKDLVKNNVSFNA-----K 453
Query: 520 HLAGPVE-TLDEKRLRAF-ACIEITLEKCIVVL--EW 552
+ PV T D LR I + CI+ L +W
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW 490
Score = 45.4 bits (107), Expect = 6e-05
Identities = 51/263 (19%), Positives = 84/263 (31%), Gaps = 91/263 (34%)
Query: 6 GAGQEVGRSCIM-LEFKNKSIM-------MDCGIHPGLSGMDALPF--VDLVESDQIDLL 55
G+ QE G M ++ S D H D F +D+V ++ ++L
Sbjct: 1625 GS-QEQG----MGMDLYKTSKAAQDVWNRADN--HF----KDTYGFSILDIVINNPVNLT 1673
Query: 56 LISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQML----- 110
+ HF G KG+ + Y ++ + I + TE++
Sbjct: 1674 I--HF--------------GGEKGK-----RIRENYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 111 ----YTESDLEKSMDKIETIN------------FHEEKDVNGIKFSAYNAGHVLG--AAM 152
YT + + T F + K I A AGH LG AA
Sbjct: 1713 HSTSYTFRSEKGLLSA--TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA- 1769
Query: 153 FLIEIAGV-------KILYT-GDFSRQE--------DRHLMAAEIPPVKPDILITESTYG 196
L +A V ++++ G + + M A I P + ++
Sbjct: 1770 -LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA-INPGRVAASFSQEALQ 1827
Query: 197 THVHEQREEREGRFTSLIHDIVN 219
V E+ +R G IVN
Sbjct: 1828 YVV-ERVGKRTGWLVE----IVN 1845
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR
initiative, midwest center for structural genomics,
MCSG, U function; 2.00A {Enterococcus faecalis} SCOP:
d.157.1.10
Length = 429
Score = 71.2 bits (175), Expect = 3e-13
Identities = 42/268 (15%), Positives = 74/268 (27%), Gaps = 58/268 (21%)
Query: 4 LKGAGQEVGRSCIMLEFKNKSIMMDCGI------------HPGLSGMDALP-FVDLV--- 47
G +G + I + +K+ I D G L +P DL
Sbjct: 12 HSGIL-TIGGTVIEVAYKDAHIFFDFGTEFRPELDLPDDHIETLINNRLVPELKDLYDPR 70
Query: 48 ----------ESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSD 97
+ Q + +SH HLDH + + + TK I L
Sbjct: 71 LGYEYHGAEDKDYQHTAVFLSHAHLDHSRMINYLDPAV----PLYTLKETKMILNSLNR- 125
Query: 98 YIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVN--GIKFSAYNAGH-VLGAAMFL 154
+ S E+ E I ++ + I H GA+ L
Sbjct: 126 ---------KGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALL 176
Query: 155 IEIAGVKILYTGDF----SRQEDRHLMAAEIPPVKPDILITESTYGTHVHEQREEREGRF 210
I I YTGD +E+ + ++L+ E + + + +
Sbjct: 177 IRTPDHFITYTGDLRLHGHNREETLAFCEKAK--HTELLMMEGVSISFPEREPDPAQIAV 234
Query: 211 TS------LIHDIV--NRGGRCLIPVFA 230
S + + N + +
Sbjct: 235 VSEEDLVQHLVRLELENPNRQITFNGYP 262
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural
genomics, PSI, protein STRU initiative; 1.50A {Bacillus
anthracis str} SCOP: d.157.1.9
Length = 268
Score = 65.0 bits (159), Expect = 8e-12
Identities = 32/184 (17%), Positives = 59/184 (32%), Gaps = 27/184 (14%)
Query: 14 SCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLL 73
S + E +++DCG G+ + ID +++SH+H DH +
Sbjct: 44 SGYLFEHDGFRLLVDCG--SGVLA----QLQKYITPSDIDAVVLSHYHHDHVADIG---- 93
Query: 74 KTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEK- 132
+ +T ATK L I + E + L + I ++ E+
Sbjct: 94 --VLQYARLITSATKGQLPEL---PI-YGHTFDENGFH---SLTHE-PHTKGIPYNPEET 143
Query: 133 -DVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDFSRQEDRHLMAAEIPPVKPDILIT 191
+ S H + I ++Y+ D S + + D+ I
Sbjct: 144 LQIGPFSISFLKTVHPVTCFAMRITAGNDIVVYSADSSYIPEFIPFTKD-----ADLFIC 198
Query: 192 ESTY 195
E
Sbjct: 199 ECNM 202
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.4 bits (148), Expect = 6e-10
Identities = 82/632 (12%), Positives = 165/632 (26%), Gaps = 166/632 (26%)
Query: 42 PFV-DLVESDQIDLL--LISHFHLDHCGALP----------WFLLKTGFKG-RCFMTHAT 87
FV + D D+ ++S +DH W LL + + F+
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 88 KAIYRWLLSDYIKVSN---ISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYN- 143
+ Y++L+S + T + L N + ++ +
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 144 --AGHVL--GAAMFLIEIAGV-KILYTGDFSRQEDRHL-MAAEI----------PPVKPD 187
A +VL G + G K D M +I P +
Sbjct: 148 RPAKNVLIDG--V-----LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 188 ILITESTYGTHVHEQREEREGRFTSLIHDIVNRGGRCLIPVFALGRAQELLLILDEYWSL 247
+L R + IH I L + + LL+L +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE----LRRLLKSKPYENCLLVLLNVQN- 255
Query: 248 HPELHDIPIYYASSLAKKCMSVYQTYINAMNDRIRRQISINNPFVFKHISNLKGIDHFED 307
+ + + C + + ++ +S + + E
Sbjct: 256 -AKAWN-------AFNLSC----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE- 302
Query: 308 IGPCVVMASPGMMQSGLSRELFEMWCTDAKNGVIIAGYCVEGTLAKTILSEPEEVIGMSG 367
+ L + L P EV+ +
Sbjct: 303 -----------------VKSLLLKY------------------LDCRPQDLPREVLTTN- 326
Query: 368 QRLPLKMSV------DYIS---FSAHTDYQQTSE----FVRELRPAH--------VVL-- 404
P ++S+ D ++ H + + + + L PA V
Sbjct: 327 ---PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 405 -VHGEQNEMSRLKAALTREYEDD-----PNTSM-ELYNPRNTVSV-DLYFKGEKTAKVMG 456
H +S + + + S+ E +T+S+ +Y + + +
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 457 EL---AVENLKPDAAL--SGIIVKRNFNY-------HLLAP------SDLPK-YTDLK-- 495
L V++ +I Y HL + + D +
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 496 ASKIIQQQSVYYSGS-----ISVLRSLISHLAGPVETLDEKRLRAFACIEITLEKCIVVL 550
KI + + + + L+ ++ + E+ + A I L K
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYIC-DNDPKYERLVNA---ILDFLPKI---- 555
Query: 551 EWASNPISDMYADSLISECLIEILVEMYGEAA 582
N I Y D L+ L+ ++ EA
Sbjct: 556 --EENLICSKYTD-LLRIALMAEDEAIFEEAH 584
Score = 55.6 bits (133), Expect = 4e-08
Identities = 60/426 (14%), Positives = 130/426 (30%), Gaps = 123/426 (28%)
Query: 274 INAMNDRIRRQISINNP-FV----FKHISN-LKGI---DHFEDIGPCVVMASPGMMQSGL 324
+ + +S+ FV K + + K I + + I + S +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-----IMSKDAVSG-- 63
Query: 325 SRELFEMWCTDAKNGV-----------------IIAGYCVEGTLAKTILSEPEEVIGMSG 367
+ LF + + V I + ++ + E + +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 368 QRLPLKMSVDYISFSAHTDYQQTSEFVRELRPAHVVLVHGEQNEM-----SRLKAALTRE 422
Q K +V S Y + + + ELRPA VL+ G + + + +
Sbjct: 124 QVFA-KYNV-----SRLQPYLKLRQALLELRPAKNVLIDG----VLGSGKTWVALDVCLS 173
Query: 423 YE-----------------DDPNTSMELYNPRNTVSVDLYFKGEKTAKVMGE------LA 459
Y+ + P T +E+ L ++ + + L
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-------KLLYQIDPNWTSRSDHSSNIKLR 226
Query: 460 VENLKPDAALSGIIVKRNFNYHLLAPSDLPKYTDLKA----SKII---QQQSV--YYSGS 510
+ +++ A L ++ + + LL ++ A KI+ + + V + S +
Sbjct: 227 IHSIQ--AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 511 ISVLRSLISHLAGPVETLDEKRLRAFA-CIEITL-----EKCIVVLEWASNPISDMYADS 564
+ SL H T DE ++ E NP S
Sbjct: 285 TTTHISLDHHSMT--LTPDEV-KSLLLKYLDCRPQDLPREVLTT------NPR----RLS 331
Query: 565 LISECLIEILV--EMYGEAAVPKMFKGEKITITVDKKKACID-------LVDLSVQCEDS 615
+I+E + + L + + K +K+T ++ ++ LSV +
Sbjct: 332 IIAESIRDGLATWDNW------KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 616 KLKSTV 621
+ + +
Sbjct: 386 HIPTIL 391
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease,
exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A
{Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Length = 562
Score = 54.5 bits (132), Expect = 7e-08
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 14/79 (17%)
Query: 10 EVGRSCIMLEFKNKSIMMDCGI-HPGLSGMDALPFVDLV---------ESDQIDLLLISH 59
E+G++ + F+++ ++D G+ P + +P VDL+ +I +++H
Sbjct: 27 EIGKNITVFRFRDEIFVLDGGLAFPE----EGMPGVDLLIPRVDYLIEHRHKIKAWVLTH 82
Query: 60 FHLDHCGALPWFLLKTGFK 78
H DH G LP+ L K
Sbjct: 83 GHEDHIGGLPFLLPMIFGK 101
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A
{Bacillus subtilis}
Length = 555
Score = 51.8 bits (125), Expect = 5e-07
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 14/73 (19%)
Query: 10 EVGRSCIMLEFKNKSIMMDCGI-HPGLSGMDALPFVDLV---------ESDQIDLLLISH 59
E+G++ ++F+++ +++D GI P D L +D V D+I L I+H
Sbjct: 19 EIGKNTYAVQFQDEIVLIDAGIKFPE----DELLGIDYVIPDYTYLVKNEDKIKGLFITH 74
Query: 60 FHLDHCGALPWFL 72
H DH G +P+ L
Sbjct: 75 GHEDHIGGIPYLL 87
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II;
metal-dependent hydrolases of the beta-lactamase
superfamily hydrolase; 2.10A {Thermoanaerobacter
tengcongensis}
Length = 284
Score = 49.3 bits (117), Expect = 2e-06
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 15 CIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFL 72
++L+ NK I++D G L +D+ +I ++++H H DH G L L
Sbjct: 35 SLLLKKGNKEIVVDTGQSENFIKNCGLMGIDV---GRIKKVVLTHGHYDHIGGLKGLL 89
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase,
metal-binding, tRNA processing, zinc-binding,
catabolism; 1.70A {Homo sapiens}
Length = 368
Score = 48.7 bits (116), Expect = 3e-06
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 14 SCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLL 73
S ++L + + + DCG G +++ +I + I+H H DH LP L
Sbjct: 20 SAVVLRCEGECWLFDCG-----EGTQTQLMKSQLKAGRITKIFITHLHGDHFFGLPGLLC 74
Query: 74 KTGFKGRCFMTHATKAIY 91
+ ++ IY
Sbjct: 75 TISLQSGSMVSKQPIEIY 92
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate
utilization, alkylphosphonate uptake; 1.40A {Escherichia
coli} PDB: 3p2u_A
Length = 258
Score = 45.8 bits (109), Expect = 2e-05
Identities = 23/158 (14%), Positives = 50/158 (31%), Gaps = 29/158 (18%)
Query: 13 RSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFL 72
+++F + ++D G+H L++H+H+DH L F
Sbjct: 39 PCSGVVKFNDAITLIDAGLHDLADRWSP---------GSFQQFLLTHYHMDHVQGL--FP 87
Query: 73 LKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEK 132
L+ G + D + + +D T+
Sbjct: 88 LRWGVGDP-IPVYGPPDEQGC---DDL---------FKHP-----GLLDFSHTVEPFVVF 129
Query: 133 DVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDFSR 170
D+ G++ + H +L+E A ++ + D +
Sbjct: 130 DLQGLQVTPLPLNHSKLTFGYLLETAHSRVAWLSDTAG 167
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z,
hydrolase, metal- binding, endonuclease, tRNA
processing, zinc; 2.9A {Escherichia coli} SCOP:
d.157.1.7
Length = 306
Score = 45.5 bits (108), Expect = 2e-05
Identities = 37/234 (15%), Positives = 67/234 (28%), Gaps = 68/234 (29%)
Query: 14 SCIMLEFKNKS----IMMDCG-------IHPGLSGMDALPFVDLVESDQIDLLLISHFHL 62
+ I+L ++ + + DCG +H + +D + ISH H
Sbjct: 21 TAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGK------------LDKIFISHLHG 68
Query: 63 DHCGALPWFLLKTGFKGRC-------------FMTHATKAIYRWL--------------- 94
DH LP L G F+ A + W
Sbjct: 69 DHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEIL 128
Query: 95 LSDYIKVS------NISTEQMLYTESDLEKSMD--KIETINFHEEKDVNGIKFSAY---N 143
KV+ + E D +++ ++ +K
Sbjct: 129 DDGLRKVTAYPLEHPLECYGYRIEEHDAPGALNAQALKAAGVPPGPLFQELKAGKTITLE 188
Query: 144 AGHVLGAAMFLIE-IAGVKILYTGDFSRQEDRHLMAAEIPPVKPDILITESTYG 196
G + A +L + G + GD + D L A+ D+++ E+T
Sbjct: 189 DGRQINGADYLAAPVPGKALAIFGD-TGPCDAALDLAK----GVDVMVHEATLD 237
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET:
MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB:
2fk6_A*
Length = 320
Score = 44.7 bits (106), Expect = 5e-05
Identities = 40/233 (17%), Positives = 74/233 (31%), Gaps = 67/233 (28%)
Query: 14 SCIMLEF---KNKSIMMDCG-------IHPGLSGMDALPFVDLVESDQIDLLLISHFHLD 63
+ + L+ + + DCG +H + I+ + I+H H D
Sbjct: 20 TSVALKLLEERRSVWLFDCGEATQHQMLHTTIKPRK------------IEKIFITHMHGD 67
Query: 64 HCGALPWFLLKTGFKGRC-------------FMTHATKAIYRWL---------------L 95
H LP L F+G F+ + L
Sbjct: 68 HVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTKTHLTYPLAIQEIEEGIVFE 127
Query: 96 SDYIKVSNISTEQMLY------TESDLEKSM--DKIETINFHEEKDVNGIKFSAY---NA 144
D V+ +S + E D+ S+ D ++ +N IK
Sbjct: 128 DDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLKEMNIPPGPVYQKIKKGETVTLED 187
Query: 145 GHVLGAAMFLIE-IAGVKILYTGDFSRQEDRHLMAAEIPPVKPDILITESTYG 196
G ++ FL G ++++GD +R D+ A D+++ E+T+
Sbjct: 188 GRIINGNDFLEPPKKGRSVVFSGD-TRVSDKLKELAR----DCDVMVHEATFA 235
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 41.9 bits (97), Expect = 1e-04
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
Query: 408 EQNEMSRLKAALTREYEDD--P----NTSME 432
E+ + +L+A+L + Y DD P +ME
Sbjct: 18 EKQALKKLQASL-KLYADDSAPALAIKATME 47
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.50A
{Staphylococcus aureus subsp}
Length = 280
Score = 42.7 bits (101), Expect = 2e-04
Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 34/172 (19%)
Query: 15 CIMLEFKNKSIMMDCGIHPGLSGMDALPFV--------DLVES--------DQIDLLLIS 58
I+++ ++++D GI G + ++ ID +L++
Sbjct: 50 PILIQTAQYNLIIDAGI--GNGKLSEKQLRNFGVDEESHIIADLANYNLTPKDIDYVLMT 107
Query: 59 HFHLDHCGALPWFLLKTGFKGRCF---MTHATKAIYRWLLSDYIKVSNISTEQMLYTESD 115
H H DH L F + + + ++ I+ + Y + +
Sbjct: 108 HMHFDHAA---G--LTDQAGHAIFENAIHVVQQDEWHEFIAPNIR------SKSTYWDKN 156
Query: 116 LEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGD 167
+K+ H E V GIK GH G + IE G K ++ GD
Sbjct: 157 KGDYSNKLILFEKHFE-PVPGIKMQHSG-GHSFGHTIITIESQGDKAVHMGD 206
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga
maritima} SCOP: d.157.1.11
Length = 221
Score = 42.0 bits (99), Expect = 2e-04
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 50 DQIDLLLISHFHLDHCGALPWF 71
D I +L +H HLDH F
Sbjct: 72 DDITDVLFTHVHLDHIFNSVLF 93
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic
resistance, binuclear zinc, hydrolase; 1.70A
{Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB:
2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A*
2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A
Length = 269
Score = 41.4 bits (97), Expect = 5e-04
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 14 SCIMLEFKNKSIMMDCGIHPG-----LSGMDALPFVDLVESDQIDLLLISHFHLDHCGAL 68
+ ++++ + ++++D G P L M A + L+L+SH H DH G +
Sbjct: 39 TALLVQTPDGAVLLDGG-MPQMASHLLDNMKARGV----TPRDLRLILLSHAHADHAGPV 93
Query: 69 PWFLLKTGFK 78
+TG K
Sbjct: 94 AELKRRTGAK 103
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; 1.97A {Thermotoga
maritima} SCOP: d.157.1.7 PDB: 1ww1_A
Length = 280
Score = 41.1 bits (97), Expect = 7e-04
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 20/62 (32%)
Query: 14 SCIMLEFKNKSIMMDCG------IHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGA 67
+ + + I+ D G + G + ++H H+DH
Sbjct: 11 FSTWIYYSPERILFDAGEGVSTTL--GSKVY------------AFKYVFLTHGHVDHIAG 56
Query: 68 LP 69
L
Sbjct: 57 LW 58
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine
lactone, DI-nuclear zinc center quenching, AIIB,
phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Length = 276
Score = 40.2 bits (94), Expect = 0.001
Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 18/127 (14%)
Query: 47 VESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNIST 106
+ D I +++SH H DH G + +F + + + ++
Sbjct: 99 LSPDDISTVVLSHLHNDHAGCVEYF------------GKSRLIAHEDEFATAVRYFATGD 146
Query: 107 EQMLYTESDLEKSMDKIE---TINFHEEKD--VNGIKFSAYNAGHVLGAAMFLIEIAGVK 161
Y D+E + + E + G+ + GH G + +
Sbjct: 147 HSSPYIVKDIEAWLATPRNWDLVGRDERERELAPGVNLLNFGTGHASGMLGLAVRLEKQP 206
Query: 162 -ILYTGD 167
L D
Sbjct: 207 GFLLVSD 213
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone
signal, metallo-beta-lactamase FOL conserved
hypothetical protein; HET: EPE; 1.80A {Sulfolobus
tokodaii}
Length = 261
Score = 39.7 bits (93), Expect = 0.001
Identities = 30/162 (18%), Positives = 66/162 (40%), Gaps = 25/162 (15%)
Query: 14 SCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLL 73
+ ++ + ++M+D G+ ++ L D++D ++++H H+DH G LP L
Sbjct: 21 TVYVMCGEKLTVMIDAGVSNSIADFSFL--------DKLDYIVLTHLHIDHIGLLPELLQ 72
Query: 74 KTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTES-------DLEKSMDKIETI 126
K + + ++L S+ + + + + + + DK+ +
Sbjct: 73 VYKAK---VLVKSGFK--KYLTSEDGLKKLNESAEKVLGDLYYVYGGLEKKLDQDKVIEV 127
Query: 127 NFHEEKDVNGIKFSAYNA-GHVLGAAMFLIEIAGVKILYTGD 167
+EE D+ G + GH L++ L+TGD
Sbjct: 128 EGNEEFDLGGYRMRLIYTPGHARHHMSVLVD----DFLFTGD 165
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling
protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB:
2q0j_A 2q0i_A 3dh8_A*
Length = 303
Score = 39.8 bits (93), Expect = 0.002
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 28 DCGIHPG----LSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFL 72
+ GI + + + Q+ LI+H H DHCG LP+
Sbjct: 40 EGGISRDAELVWADLCRWV----ADPSQVHYWLITHKHYDHCGLLPYLC 84
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP}
SCOP: d.157.1.5
Length = 331
Score = 39.7 bits (93), Expect = 0.002
Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 32/171 (18%)
Query: 15 CIMLEFKNKSIMMDCGI----HPGLSGMDALPFVDL----VESDQIDLLLISHFHLDHCG 66
++ +K +++D G P L + A +L + +Q+D + I+H H DH G
Sbjct: 99 GYLVNTGSKLVLVDTGAAGLFGPTLGRLAA----NLKAAGYQPEQVDEIYITHMHPDHVG 154
Query: 67 AL-----PWF---LLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQ--MLYTESDL 116
L F +++ K F + D K Y ++
Sbjct: 155 GLMVGEQLAFPNAVVRADQKEADFWLS--QTNLDKAPDDESKGFFKGAMASLNPYVKA-- 210
Query: 117 EKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGD 167
K + + + + V GIK A + GH G +++E G K+ GD
Sbjct: 211 ----GKFKPFSGNTD-LVPGIKALASH-GHTPGHTTYVVESQGQKLALLGD 255
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance,
acquired B3, drug binding; 1.40A {Pseudomonas
aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B
Length = 303
Score = 39.6 bits (92), Expect = 0.002
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 12 GRSCIMLEFKNKSIMMDCGIHPG-----LSGMDALPFVDLVESDQIDLLLISHFHLDHCG 66
G S +++ I++D P L+ + AL F + + ++ SH H DH G
Sbjct: 57 GISALLVTSDAGHILVDAAT-PQAGPQILANIRALGF----RPEDVRAIVFSHEHFDHAG 111
Query: 67 ALPWFLLKTG 76
+L TG
Sbjct: 112 SLAELQKATG 121
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein,
metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium
loti} PDB: 3aj0_A
Length = 274
Score = 38.9 bits (91), Expect = 0.003
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 17/73 (23%)
Query: 15 CIMLEFKNKSIMMDCGIHPGLSGMDALPFV--------DLVES--------DQIDLLLIS 58
I++E ++D G LPF + + ID+++ S
Sbjct: 37 SILIEHAEGRFLIDTGYDYDHVM-KVLPFEKPIQEKHQTIPGALGLLGLEPRDIDVVVNS 95
Query: 59 HFHLDHCGALPWF 71
HFH DHCG +F
Sbjct: 96 HFHFDHCGGNKYF 108
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for
structural genomics, JCSG; 2.30A {Parabacteroides
distasonis atcc 8503}
Length = 235
Score = 38.4 bits (90), Expect = 0.004
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 11 VGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGA 67
+ +ML + N SI +D P + + D++LI+H H DH
Sbjct: 35 IKHGSLMLTYDNHSIQVD----PVSEY---ADYTTF---PKADIILITHEHGDHLDP 81
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase,
quorum quenching; HET: C6L GOL; 0.95A {Bacillus
thuringiensis serovar kurstakorganism_taxid} PDB:
3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Length = 254
Score = 38.5 bits (90), Expect = 0.004
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 50 DQIDLLLISHFHLDHCGALPWF 71
D + ++ SH H DH G F
Sbjct: 99 DDLLYIISSHLHFDHAGGNGAF 120
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella
enterica}
Length = 210
Score = 37.2 bits (87), Expect = 0.007
Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 17/135 (12%)
Query: 37 GMDALPFVDLVESD--QIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYRWL 94
G DA V++ + +L++H HLDH GA G + +
Sbjct: 32 GGDAEKIKQEVDASGVTLMQILLTHGHLDHVGAASELAQHYGVP-----VIGPEKEDEFW 86
Query: 95 LSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNA-GHVLGAAMF 153
L S +M + + D +N + V + + GH G +F
Sbjct: 87 LQGLPAQS-----RMFGLDECQPLTPD--RWLNDGDRVSVGNVTLQVLHCPGHTPGHVVF 139
Query: 154 LIEIAGVKILYTGDF 168
E + + L +GD
Sbjct: 140 FDEQSQL--LISGDV 152
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold.
two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A
{Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A*
1l9y_A
Length = 263
Score = 37.2 bits (86), Expect = 0.010
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 50 DQIDLLLISHFHLDHCGALPWFLLKTG 76
+LLISH H DH +T
Sbjct: 62 SDTKILLISHAHFDHAAGSELIKQQTK 88
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily
TM0207; metallo-hydrolase/oxidoreductase fold,
structural genomics; 2.00A {Thermotoga maritima} SCOP:
d.157.1.4
Length = 220
Score = 36.9 bits (86), Expect = 0.011
Identities = 28/161 (17%), Positives = 44/161 (27%), Gaps = 65/161 (40%)
Query: 14 SCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLL 73
+C LE + K+I+ D P P ++ D++ SH H DH
Sbjct: 21 ACFALEMEGKTIVTD----PFDES-VGYPIPNV----TADVVTESHQHFDHNAH------ 65
Query: 74 KTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKD 133
H K + I+
Sbjct: 66 -----------HLVKGNF--------------------------------RVIDRPGAYT 82
Query: 134 VNGIKFSAYNAGH-------VLGAAMFLIEIAGVKILYTGD 167
VNG+K H +F+ E G+K+ + GD
Sbjct: 83 VNGVKIKGVETFHDPSHGRERGKNIVFVFEGEGIKVCHLGD 123
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme,
sulfonamide complex hydrolase-hydrolase inhibitor
complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB:
3lvz_A* 2gmn_A
Length = 294
Score = 36.8 bits (85), Expect = 0.017
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 14 SCIMLEFKNKSIMMDCGIHPGLSGM--DALPFVDLVESDQIDLLLISHFHLDHCGALPWF 71
+ +++ I+MD P +GM D + + +D I L+L +H HLDH G
Sbjct: 56 AVYVIKTSQGLILMDTA-MPQSTGMIKDNIAKLGFKVAD-IKLILNTHAHLDHTGGFAEI 113
Query: 72 LLKTG 76
+TG
Sbjct: 114 KKETG 118
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A
{Escherichia coli} PDB: 2wym_A*
Length = 360
Score = 36.4 bits (84), Expect = 0.023
Identities = 20/149 (13%), Positives = 38/149 (25%), Gaps = 25/149 (16%)
Query: 31 IHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGA--LPWFLLKTGFKGRCFMTHATK 88
+ P L +D QID +L +H H DH +
Sbjct: 91 LQPNLRTTP--FVLDPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCV 148
Query: 89 AIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVL 148
++ V + + K++ I H + A
Sbjct: 149 DLWIGW-----GVPKERCIVVKPGDV------VKVKDIEIHALDAFDRTALITLPADQKA 197
Query: 149 GAAM----------FLIEIAGVKILYTGD 167
+ +L + G + ++GD
Sbjct: 198 AGVLPDGMDDRAVNYLFKTPGGSLYHSGD 226
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus
thermophilus}
Length = 317
Score = 35.5 bits (82), Expect = 0.042
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 52 IDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSD 97
+ +L++H H DH G + G R F+ A +
Sbjct: 63 VKTILLTHHHPDHYGLSGF-FEGLG--ARVFLHEEEFARGHRFWRE 105
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface
entropy reduction, ISFI, beta- lactamase superfamily,
PSI-2; 2.75A {Thermotoga maritima}
Length = 267
Score = 34.7 bits (79), Expect = 0.068
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 23 KSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCF 82
S++ D G L + D +LISH H DH G L + K + +
Sbjct: 38 DSVLFDTG-----KSDVFLKNARKLGIDLPKDVLISHGHYDHAGGLLYLSGKRVWLRKEA 92
Query: 83 M 83
+
Sbjct: 93 L 93
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein STR
initiative, PSI, joint center for structural genomics,
ELEC transport; HET: MSE; 1.80A {Thermotoga maritima}
SCOP: c.23.5.1 d.157.1.3
Length = 410
Score = 34.4 bits (79), Expect = 0.11
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 45 DLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAI 90
+V+ +I ++++H DH G+LP L G ++ K +
Sbjct: 83 KIVDPKEITHIIVNHTEPDHSGSLPATLKTIGHDVEIIASNFGKRL 128
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 34.1 bits (78), Expect = 0.16
Identities = 26/178 (14%), Positives = 48/178 (26%), Gaps = 28/178 (15%)
Query: 40 ALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYRWLLS--- 96
+P D E I + A +K + A+ + L+
Sbjct: 1277 EIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDD 1336
Query: 97 -DYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSA--YNAGHVLGAAMF 153
ST+ ES M + + N + + GH GAA
Sbjct: 1337 LGVASFHGTSTKANDKNESATINEM-----MKHLGRSEGNPVIGVFQKFLTGHPKGAAGA 1391
Query: 154 LIEIAGVKILYTGDFSRQEDRHLMAAEIPP----VKPDILITESTYGTHVHEQREERE 207
+ ++IL +G IP D ++ + Y + + +
Sbjct: 1392 WMMNGALQILNSG-------------IIPGNRNADNVDKILEQFEYVLYPSKTLKTDG 1436
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A
{Thermus thermophilus} PDB: 2zzi_A
Length = 207
Score = 32.9 bits (76), Expect = 0.20
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 37 GMDALPFVDLVESDQIDL--LLISHFHLDHCGALPWFLLKTG 76
G + + L ++ + +L++H H DH GA+ +
Sbjct: 30 GDEPEKLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVEALD 71
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase
fold; 2.70A {Pseudomonas SP}
Length = 668
Score = 33.5 bits (75), Expect = 0.23
Identities = 14/97 (14%), Positives = 30/97 (30%)
Query: 15 CIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLK 74
++E + +++D + + I ++ SH H+DH G + +
Sbjct: 135 MTIIEGDSGLVLIDTLTTAETARAALDLYFQHRPKKPIVAVVYSHSHIDHFGGARGIIDE 194
Query: 75 TGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLY 111
K A +S+ I + Y
Sbjct: 195 ADVKAGKVKVFAPSGFMEHAVSENILAGTAMARRGQY 231
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like,
oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Length = 414
Score = 33.3 bits (76), Expect = 0.25
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 45 DLVESDQIDLLLISHFHLDHCGALPWFL 72
D+I ++++H DH +L
Sbjct: 71 ACCPLDKIKYVVMNHAEGDHASSLKDHY 98
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta
lactamase, mitochondria; 2.60A {Homo sapiens}
Length = 289
Score = 32.9 bits (75), Expect = 0.28
Identities = 10/52 (19%), Positives = 20/52 (38%)
Query: 25 IMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTG 76
I++D G + L + I ++++H+H DH G +
Sbjct: 44 ILIDTGEPAIPEYISCLKQALTEFNTAIQEIVVTHWHRDHSGGIGDICKSIN 95
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic
recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A
2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Length = 265
Score = 32.5 bits (74), Expect = 0.31
Identities = 15/143 (10%), Positives = 40/143 (27%), Gaps = 25/143 (17%)
Query: 25 IMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMT 84
+++D + L ++ + + +HFH D G + + T
Sbjct: 80 LLIDTAWGAKN-TVALLAEIEKQIGLPVTRSISTHFHDDRVGGVDV------LRAAGVAT 132
Query: 85 HATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNA 144
+ + + + +V S + + + + ++ A
Sbjct: 133 YTSPLTRQLAEAAGNEVPAHSLKALSSSGDVV----------------RFGPVEVFYPGA 176
Query: 145 GHVLGAAMFLIEIAGVKILYTGD 167
H + + V L+ G
Sbjct: 177 AHSGDNLVVYVPAVRV--LFGGC 197
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN;
2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3
PDB: 1ycf_A* 1ych_A*
Length = 398
Score = 32.8 bits (75), Expect = 0.34
Identities = 13/124 (10%), Positives = 31/124 (25%), Gaps = 22/124 (17%)
Query: 45 DLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNI 104
+ + ++D L+++H DH GA P +++ T L + +
Sbjct: 66 QIKDPVKLDYLVVNHTESDHAGAFP-AIMELCPDAHVLCTQRAFD----SLKAHYSHID- 119
Query: 105 STEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILY 164
+ + + A + + +L
Sbjct: 120 ----------------FNYTIVKTGTSVSLGKRSLTFIEAPMLHWPDSMFTYVPEEALLL 163
Query: 165 TGDF 168
D
Sbjct: 164 PNDA 167
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like
fold, MCSG, structural PSI-2, protein structure
initiative; 1.80A {Vibrio cholerae o1 biovar eltor}
Length = 379
Score = 32.6 bits (74), Expect = 0.41
Identities = 21/150 (14%), Positives = 40/150 (26%), Gaps = 46/150 (30%)
Query: 42 PFVDLVESDQIDLLLISHFHLDHCGA--LPWFLLKTGFKGRCFMTHATKAIYRWLLSDYI 99
+D +ID +L SH H DH L G + +A L +
Sbjct: 124 FPLDPFAIKEIDAVLASHDHADHIDVNVAAAVLQNCGEHVKFI---GPQACVDLWLGWGV 180
Query: 100 KVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLG---------- 149
++ + ++ +K ++
Sbjct: 181 -------------------PQERCIVAKVGDVLEIGDVKIRVLDSFDRTALVTLPKGVSS 221
Query: 150 ------------AAMFLIEIAGVKILYTGD 167
A +LIE +G + ++GD
Sbjct: 222 YDKAILDGMDERAVNYLIETSGGSVYHSGD 251
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine
like domain, oxidore; HET: FMN; 1.70A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 2ohi_A* 2ohj_A*
Length = 404
Score = 32.5 bits (74), Expect = 0.42
Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 24/130 (18%)
Query: 39 DALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSDY 98
DAL V + +++D ++ +H DH G L + + T+ + LL Y
Sbjct: 66 DALQQVGM---ERVDYIIQNHVEKDHSGVLVELHRRF----PEAPIYCTEVAVKGLLKHY 118
Query: 99 IKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIA 158
+ + T+ + D+ G + + +
Sbjct: 119 PSLRE-----------------AEFMTVKTGDVLDLGGKTLTFLETPLLHWPDSMFTLLD 161
Query: 159 GVKILYTGDF 168
IL++ D
Sbjct: 162 EDGILFSNDA 171
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor,
succinic acid inhibitor, I metallo-beta-lactamase,
hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa}
SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A
1wuo_A 1jje_A* 1ddk_A
Length = 228
Score = 31.7 bits (72), Expect = 0.46
Identities = 25/140 (17%), Positives = 41/140 (29%), Gaps = 29/140 (20%)
Query: 31 IHPGLSGMDALPFVDLVE--SDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATK 88
I + D V +I + SHFH D G + W R T+A++
Sbjct: 47 IDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEW------LNSRSIPTYASE 100
Query: 89 AIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVL 148
L D Q + S + + K + F+ GH
Sbjct: 101 LTNELLKKDGK-------VQATNSFSGVNYWLVKNKIEVFY------------PGPGHTP 141
Query: 149 GAAMFLIEIAGVKILYTGDF 168
+ + + L+ G F
Sbjct: 142 DNVVVWLPERKI--LFGGCF 159
>3rpc_A Possible metal-dependent hydrolase; structural genomics,
PSI-biology, protein structure initiati midwest center
for structural genomics; 1.49A {Veillonella parvula}
Length = 264
Score = 31.6 bits (72), Expect = 0.67
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 14/68 (20%)
Query: 11 VGRSCIMLEFKNKSIMMD-----CGIHPGLSG---------MDALPFVDLVESDQIDLLL 56
+ + L KN + ++D +PG G M LP + ++
Sbjct: 10 IRNATGKLTIKNTTFLIDPFLAPKDTYPGFEGTFNYQQRMPMVDLPLSMDDLLSNVTAVV 69
Query: 57 ISHFHLDH 64
++H HLDH
Sbjct: 70 VTHTHLDH 77
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A
{Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB:
2cfz_A* 2cg2_A 2cg3_A*
Length = 658
Score = 31.5 bits (70), Expect = 0.91
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 2/98 (2%)
Query: 15 CIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQ-IDLLLISHFHLDHCGALPWFLL 73
+ + I++D P + A V ++ I ++ SH H DH G + +
Sbjct: 125 ITFIRGDSGWIVVDTLTTPATAR-AAYELVSRELGERPIRTVIYSHAHADHFGGVRGLVE 183
Query: 74 KTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLY 111
A + + + N + Y
Sbjct: 184 PQQVASGAVQIIAPAGFMEAAIKENVLAGNAMMRRATY 221
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic,
hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella
pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A*
3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A
3zr9_A 3s0z_A 3pg4_A
Length = 270
Score = 31.1 bits (70), Expect = 1.0
Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 24/119 (20%)
Query: 52 IDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSN--ISTEQM 109
+ L +++H H D G + G T+A + + + + ++
Sbjct: 113 VALAVVTHAHQDKMGGMDAL-HAAGIA-----TYANALSNQLAPQEGMVAAQHSLTFAAN 166
Query: 110 LYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDF 168
+ E + ++ GH I+ G I + G
Sbjct: 167 GWVEPATAPNFGPLKVFYPGP--------------GHTSDNITVGID--GTDIAFGGCL 209
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ
biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas
putida} PDB: 1xto_A
Length = 321
Score = 30.5 bits (68), Expect = 1.4
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 13 RSCIMLEFKNKS-IMMDCG--IHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALP 69
+S I L I+ + I L + + I+ +++ +DH L
Sbjct: 41 QSSIALSDDGVHWILCNASPDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLL 100
Query: 70 WF 71
Sbjct: 101 SL 102
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure
initiative, northeast structural GE consortium, NESG,
NSR435A, DFA5, electron transport; 1.80A {Nostoc SP}
Length = 262
Score = 30.5 bits (69), Expect = 1.5
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 45 DLVESDQIDLLLISHFHLDHCGALPWFL 72
V ++D +++ HF + L
Sbjct: 73 QTVNLKKLDYVILGHFSPNRIPTFKALL 100
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase,
DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN;
2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Length = 402
Score = 30.6 bits (69), Expect = 1.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 45 DLVESDQIDLLLISHFHLDHCGALPWFL 72
+++ +ID L+I H LDH GALP +
Sbjct: 65 SVIDPKKIDYLVIQHLELDHAGALPALI 92
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET:
MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB:
1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A
1hlk_A*
Length = 232
Score = 30.1 bits (68), Expect = 1.9
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 52 IDLLLISHFHLDHCGALPWFL 72
+ + +H+H D G L +
Sbjct: 75 VTTFIPNHWHGDCIGGLGYLQ 95
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold.,
hydrolase; HET: MCO; 1.50A {Elizabethkingia
meningoseptica} SCOP: d.157.1.1
Length = 223
Score = 29.8 bits (67), Expect = 2.3
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 52 IDLLLISHFHLDHCGALPWF 71
+ + + +H H D G L +F
Sbjct: 65 VIMNIATHSHDDRAGGLEYF 84
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A
{Serratia fonticola} PDB: 3sd9_A
Length = 233
Score = 29.3 bits (66), Expect = 2.8
Identities = 15/120 (12%), Positives = 37/120 (30%), Gaps = 16/120 (13%)
Query: 52 IDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLY 111
I+ ++ +++H D G ++ T K + + D K S
Sbjct: 64 INEVINTNYHTDRAGGNAYWK-----------TLGAKIVATQMTYDLQKSQWGSIVNFTR 112
Query: 112 TESDLEKSMDKIE-TINFHEEKDVNG--IKFSAYNAGHVLGAAMFLIEIAGVKILYTGDF 168
++ +++K F + ++ I+ H + ++LY
Sbjct: 113 QGNNKYPNLEKSLPDTVFPGDFNLQNGSIRAMYLGEAHTKDGIF--VYFPAERVLYGNCI 170
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics,
structural genomics center for infectious disease; HET:
5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB:
3qh8_A* 3py6_A* 3py5_A*
Length = 293
Score = 29.7 bits (67), Expect = 2.9
Identities = 28/176 (15%), Positives = 54/176 (30%), Gaps = 44/176 (25%)
Query: 13 RSCIMLEF-----KNKSIMMDCGIHPGLSGMDALPFVDLVES------DQIDLLLISHFH 61
R+ +++E N +++D G P D +D + +H H
Sbjct: 63 RASLLVERYDAEGNNTVVVIDTG-----------P--DFRMQMIDSGVHMLDAAVYTHPH 109
Query: 62 LDHCGALP---WFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEK 118
DH + +++ G + T+ + S+ + + D+
Sbjct: 110 ADHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYDTFGYCFETPVGSSYPPILSMHDIAP 169
Query: 119 SMDKIETINFHEEKDVNGIKFSAYNAGH----VLGAAMFLIEIAGVKILYTGDFSR 170
F E I+F ++ H LG F I ++Y D S
Sbjct: 170 ET------PFSIEGAGGAIRFEPFSQVHGDIESLG---FRIG----SVVYCTDVSA 212
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance,
hydrolase; 1.65A {Chryseobacterium indologenes}
Length = 219
Score = 29.4 bits (66), Expect = 2.9
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 52 IDLLLISHFHLDHCGALPWF 71
+ + +H H D G L +F
Sbjct: 69 VVAVFATHSHDDRAGDLSFF 88
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc
hydrolase, metal binding protein; 1.90A {Pseudomonas
aeruginosa}
Length = 246
Score = 29.4 bits (66), Expect = 3.4
Identities = 18/159 (11%), Positives = 44/159 (27%), Gaps = 12/159 (7%)
Query: 15 CIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLK 74
++ + + ++++ L + +V + + + +HFHLD G +
Sbjct: 32 VLVAKMLDGTVVIVSSPFENLGTQTLMDWVAKTMKPKKVVAINTHFHLDGTGGNEIY--- 88
Query: 75 TGFKGRCFMTH--ATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEK 132
G + + D IK + + L + + + K
Sbjct: 89 -KKMGAETWSSDLTKQLRLEENKKDRIKAAEFYKNEDLKRRILSSHPVPADNVFDLKQGK 147
Query: 133 --DVNGIKF--SAYNAGHVLGAAMFLIEIAGVKILYTGD 167
+ S H + + L+ G
Sbjct: 148 VFSFSNELVEVSFPGPAHSPDNVVVYFPKKKL--LFGGC 184
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET:
CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB:
1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A
2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A
2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...
Length = 227
Score = 29.0 bits (65), Expect = 3.6
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 52 IDLLLISHFHLDHCGALPWF 71
+ ++I+H H D G +
Sbjct: 79 VTDVIITHAHADRIGGIKTL 98
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding;
HET: SDF; 1.41A {Aeromonas hydrophila} PDB: 1x8i_A
3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A
Length = 227
Score = 27.7 bits (62), Expect = 8.6
Identities = 3/20 (15%), Positives = 11/20 (55%)
Query: 52 IDLLLISHFHLDHCGALPWF 71
+ ++ +++H D G ++
Sbjct: 61 VLEVINTNYHTDRAGGNAYW 80
>1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase,
glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens}
SCOP: c.69.1.13
Length = 302
Score = 28.3 bits (62), Expect = 8.9
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 362 VIGMSGQRLPLKMSVDYISFSAHTDYQQTSEFVRELRPAHVVLVHG---EQNEMSRLKAA 418
++G+ GQRLP + + F + +P V++VHG L
Sbjct: 1 MLGLWGQRLPAAWVLLLLPFLPLLLLAAPAPHRASYKP--VIVVHGLFDSSYSFRHLLEY 58
Query: 419 LTREYEDDPNTSMELYN 435
+ + T ++L++
Sbjct: 59 INETHPGTVVTVLDLFD 75
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain,
structural genomics, PSI-2, protein structure
initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3}
SCOP: d.190.1.2
Length = 247
Score = 27.6 bits (62), Expect = 9.7
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 196 GTHVHEQREEREGRFTSLIHDIVNRGGR 223
GT V + R +SL D+ G R
Sbjct: 77 GTQVVHSKVRRPLELSSLYDDLEAAGQR 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.400
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,587,807
Number of extensions: 601272
Number of successful extensions: 1505
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1427
Number of HSP's successfully gapped: 77
Length of query: 622
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 523
Effective length of database: 3,937,614
Effective search space: 2059372122
Effective search space used: 2059372122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.2 bits)