RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8348
(622 letters)
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation
specificity factor subunit 3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 451
Score = 351 bits (900), Expect = e-116
Identities = 361/442 (81%), Positives = 403/442 (91%)
Query: 6 GAGQEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHC 65
GAGQEVGRSCI+LEFK + IM+DCGIHPGL GMDALP++DL++ +IDLLLISHFHLDHC
Sbjct: 10 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHC 69
Query: 66 GALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIET 125
GALPWFL KT FKGR FMTHATKAIYRWLLSDY+KVSNIS + MLYTE+DLE+SMDKIET
Sbjct: 70 GALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIET 129
Query: 126 INFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDFSRQEDRHLMAAEIPPVK 185
INFHE K+V GIKF Y+AGHVLGAAMF+IEIAGVK+LYTGDFSRQEDRHLMAAEIP +K
Sbjct: 130 INFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIK 189
Query: 186 PDILITESTYGTHVHEQREEREGRFTSLIHDIVNRGGRCLIPVFALGRAQELLLILDEYW 245
PDILI ESTYGTH+HE+REERE RF + +HDIVNRGGR LIPVFALGRAQELLLILDEYW
Sbjct: 190 PDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYW 249
Query: 246 SLHPELHDIPIYYASSLAKKCMSVYQTYINAMNDRIRRQISINNPFVFKHISNLKGIDHF 305
HPELHDIPIYYASSLAKKCM+VYQTY+NAMND+IR+QI+INNPFVFKHISNLK +DHF
Sbjct: 250 QNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHF 309
Query: 306 EDIGPCVVMASPGMMQSGLSRELFEMWCTDAKNGVIIAGYCVEGTLAKTILSEPEEVIGM 365
+DIGP VVMASPGMMQSGLSRELFE WCTD +NGVIIAGYCVEGTLAK I+SEPEE+ M
Sbjct: 310 DDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTM 369
Query: 366 SGQRLPLKMSVDYISFSAHTDYQQTSEFVRELRPAHVVLVHGEQNEMSRLKAALTREYED 425
SGQ+LPLKMSVDYISFSAHTDYQQTSEF+R L+P HV+LVHGEQNEM+RLKAAL REYED
Sbjct: 370 SGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYED 429
Query: 426 DPNTSMELYNPRNTVSVDLYFK 447
+ +E++NPRNT +V L F+
Sbjct: 430 NDEVHIEVHNPRNTEAVTLNFR 451
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein
2, CFT2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 514
Score = 333 bits (854), Expect = e-108
Identities = 74/518 (14%), Positives = 166/518 (32%), Gaps = 90/518 (17%)
Query: 4 LKGAGQEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLD 63
G+G ++ F N ++++D G +P + +ID++++S ++
Sbjct: 9 DDGSGTT---VGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIE 65
Query: 64 HCGALPWFL----LKTGFKGRCFMTHATKAIYRWLLSDYIKVSNI--STEQMLYTESDLE 117
GA + + + T + R D + + + D+E
Sbjct: 66 CLGAHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIE 125
Query: 118 KSMDKIETINFHEEKDV----NGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDFSRQED 173
S D I + + + D+ +G+ AYNAG G +++ I K++Y ++ D
Sbjct: 126 ISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRD 185
Query: 174 RHLMAAEIP--------PVKPDILITESTYGTHVHEQREEREGRFTSLIHDIVNRGGRCL 225
L AA I + I + + ++R F + ++ G +
Sbjct: 186 NILNAASILDATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVI 245
Query: 226 IPVFALGRAQELLLILDEYWSLHPELH---DIPIYYASSLAKKCMSVYQTYINAMNDRIR 282
IPV G+ +L + E +++ +P+ S + ++ ++ + ++ +
Sbjct: 246 IPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLL 305
Query: 283 RQISIN---NPFVFKHISNLKGIDHFEDI-GPCVVMASPGMMQSGLSRELFEMWCTDAKN 338
+ +PF + + G + S L E+ K
Sbjct: 306 KTWENRNNTSPFEIGSRIKIIAPNELSKYPGSKICFVSEVG---ALINEVIIKVGNSEKT 362
Query: 339 GVII--AGYCVEGTLAKTILSEPEEV---------------------------------- 362
+I+ + +L K + ++
Sbjct: 363 TLILTKPSFECASSLDKILEIVEQDERNWKTFPEDGKSFLCDNYISIDTIKEEPLSKEET 422
Query: 363 ----------------IGMSGQRLPLKMSVDYISFSAHTDYQQTSEFVRELRPAHVVLVH 406
+S + LK SV ++ + D + S L+ +VL
Sbjct: 423 NFDNLDYLKIDKTLSKRTISTVNVQLKCSVVILNLQSLVDQRSASIIWPSLKSRKIVLSA 482
Query: 407 GEQNEMSRLKAALTREYEDDPNTSMELYNPRNTVSVDL 444
+Q + + A L ++ +E+ N V+
Sbjct: 483 PKQIQNEEITAKLIKKN-------IEVVNMPLNKIVEF 513
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein
TTHA0252 {Thermus thermophilus [TaxId: 274]}
Length = 431
Score = 276 bits (706), Expect = 3e-87
Identities = 112/426 (26%), Positives = 208/426 (48%), Gaps = 19/426 (4%)
Query: 6 GAGQEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHC 65
GA +EV S +L + +++DCG+ G + ++D +L++H HLDH
Sbjct: 7 GAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTHAHLDHV 65
Query: 66 GALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIET 125
G LP L + G++G + T AT + +L D +KV + + + D+E+++ +
Sbjct: 66 GRLPK-LFREGYRGPVYATRATVLLMEIVLEDALKVMD----EPFFGPEDVEEALGHLRP 120
Query: 126 INFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDFSRQEDRHLMAAEIPPVK 185
+ + E + + + AGH+ G+A + + G ++Y+GD +E L +PP
Sbjct: 121 LEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPP-L 179
Query: 186 PDILITESTYGTHVHEQREEREGRFTSLIHDIVNRGGRCLIPVFALGRAQELLLILDEYW 245
D+++ E TYG H E F ++ +++GG+ LIP FA+ RAQE+L +L +
Sbjct: 180 ADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHG 239
Query: 246 SLHPELHDIPIYYASSLAKKCMSVYQTYINAMNDRIR-RQISINNPFVFKHISNLKGIDH 304
P PIY S +A + +S+Y + ++ ++ + NPF + ++ +
Sbjct: 240 HRLP---RAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEA 296
Query: 305 FEDI----GPCVVMASPGMMQSGLSRELFEMWCTDAKNGVIIAGYCVEGTLAKTILSEPE 360
+ + GP VV+A GM+ G + +D +N ++ GY +G L I++ P
Sbjct: 297 SKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPP 356
Query: 361 EVIGMSGQRLPLKMSVDYI-SFSAHTDYQQTSEFVRELRPAHVVLVHGEQNEMSRLKAAL 419
V + G+ +PL+ SV + FS H + ++++ VVLVHGE+ ++ L L
Sbjct: 357 AVR-ILGEEVPLRASVHTLGGFSGHAGQDELLDWLQ--GEPRVVLVHGEEEKLLALGKLL 413
Query: 420 TREYED 425
++
Sbjct: 414 ALRGQE 419
Score = 30.0 bits (66), Expect = 1.0
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 137 IKFSAYNAGHVLGAAMFLIEIAGVKILY-TG-DFSRQEDRHLMAAEIPPVKPD-ILITES 193
++ + A + + L+ G ++L G ++E R+ P + D +L+
Sbjct: 1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLL--- 57
Query: 194 TYGTHVHE 201
TH H
Sbjct: 58 ---THAHL 62
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904
{Enterococcus faecalis [TaxId: 1351]}
Length = 183
Score = 70.5 bits (171), Expect = 1e-14
Identities = 26/163 (15%), Positives = 51/163 (31%), Gaps = 15/163 (9%)
Query: 48 ESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTE 107
+ Q + +SH HLDH + + + TK I L
Sbjct: 26 KDYQHTAVFLSHAHLDHSRMINYLD----PAVPLYTLKETKMILNSLNRKGDF------- 74
Query: 108 QMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAG-HVLGAAMFLIEIAGVKILYTG 166
++ + + + ++ +N ++ V I GA+ LI I YTG
Sbjct: 75 -LIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTPDHFITYTG 133
Query: 167 DFSRQEDRH--LMAAEIPPVKPDILITESTYGTHVHEQREERE 207
D +A ++L+ E + + + +
Sbjct: 134 DLRLHGHNREETLAFCEKAKHTELLMMEGVSISFPEREPDPAQ 176
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine
esterase Pce (LytD), N-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 305
Score = 72.0 bits (175), Expect = 2e-14
Identities = 30/209 (14%), Positives = 60/209 (28%), Gaps = 33/209 (15%)
Query: 14 SCIMLEFKNKSIMMDCGIHPGLSGMDA---------------------LPFVDLVESDQI 52
I+LE M+D G + + ++
Sbjct: 15 DAIILESNGHFAMVDTGEDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQKL 74
Query: 53 DLLLISHFHLDHCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSD------YIKVSNIST 106
D +L++H H DH G + LL T R ++ + + Y KV +T
Sbjct: 75 DFILVTHTHSDHIGNVDE-LLSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTAT 133
Query: 107 EQM-----LYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVK 161
E T+ D ++ ++ E + + + + ++++ G K
Sbjct: 134 ETGVSVIQNITQGDAHFQFGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKK 193
Query: 162 ILYTGDFSRQEDRHLMAAEIPPVKPDILI 190
I GD + +
Sbjct: 194 IYLGGDLDNVHGAEDKYGPLIGKVDLMKF 222
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 50.9 bits (120), Expect = 2e-07
Identities = 20/155 (12%), Positives = 36/155 (23%), Gaps = 11/155 (7%)
Query: 3 TLKGAGQEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHL 62
+ G + + + I + I+ D G G+S + ++H H+
Sbjct: 2 NIIGFSKALFSTWIYYS--PERILFDAG--EGVSTTLGSKV------YAFKYVFLTHGHV 51
Query: 63 DHCGALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDK 122
DH L ++ G Y + + K
Sbjct: 52 DHIAGLWG-VVNIRNNGMGDREKPLDVFYPEGNRAVEEYTEFIKRANPDLRFSFNVHPLK 110
Query: 123 IETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEI 157
F + HV F I
Sbjct: 111 EGERVFLRNAGGFKRYVQPFRTKHVSSEVSFGYHI 145
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894
{Thermotoga maritima [TaxId: 2336]}
Length = 207
Score = 43.2 bits (100), Expect = 4e-05
Identities = 34/192 (17%), Positives = 60/192 (31%), Gaps = 9/192 (4%)
Query: 6 GAGQEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHC 65
G + + LE K++ I++D G + ++ + D I +L +H HLDH
Sbjct: 16 GRLNAHFSTVVYLEHKDRRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHI 75
Query: 66 GALPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIET 125
F T + + T + + Y KV + +L +
Sbjct: 76 FNSVLFENATFYVHEVYKTKNYLSFGTIVGRIYSKVISSWKNVVLLKGEESLFDEKVKVF 135
Query: 126 INFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDFSRQEDRHLMAAE----- 180
++ NAG VL + G S Q L
Sbjct: 136 HTPWHAREHLSFLLDTENAGRVLITGDITPNRLSYYDIIKGYGSVQVKNFLDRVGRIDLL 195
Query: 181 IP----PVKPDI 188
+ P+KP++
Sbjct: 196 VFPHDAPLKPEV 207
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp.
WBC-3 [TaxId: 165468]}
Length = 294
Score = 42.7 bits (99), Expect = 9e-05
Identities = 25/173 (14%), Positives = 51/173 (29%), Gaps = 4/173 (2%)
Query: 15 CIMLEFKNKSIMMDCGIHPGLSGMDALPFVDL----VESDQIDLLLISHFHLDHCGALPW 70
++ +K +++D G +L + +Q+D + I+H H DH G L
Sbjct: 64 GYLVNTGSKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLMV 123
Query: 71 FLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHE 130
+ + + S + L + + F
Sbjct: 124 GEQLAFPNAVVRADQKEADFWLSQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKPFSG 183
Query: 131 EKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDFSRQEDRHLMAAEIPP 183
D+ + + GH G +++E G K+ GD +
Sbjct: 184 NTDLVPGIKALASHGHTPGHTTYVVESQGQKLALLGDLILVAAVQFDDPSVTT 236
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016)
{Bacillus anthracis [TaxId: 1392]}
Length = 244
Score = 39.3 bits (90), Expect = 6e-04
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 6/82 (7%)
Query: 12 GRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWF 71
S + E +++DCG G+ + ID +++SH+H DH +
Sbjct: 18 ATSGYLFEHDGFRLLVDCG--SGVLAQ----LQKYITPSDIDAVVLSHYHHDHVADIGVL 71
Query: 72 LLKTGFKGRCFMTHATKAIYRW 93
IY
Sbjct: 72 QYARLITSATKGQLPELPIYGH 93
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas
maltophilia [TaxId: 40324]}
Length = 266
Score = 38.1 bits (87), Expect = 0.002
Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 13/148 (8%)
Query: 10 EVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALP 69
+ ++++ + ++++D G+ S + V + L+L+SH H DH G +
Sbjct: 34 TEDLTALLVQTPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVA 93
Query: 70 WFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFH 129
+T A L + ++ + + + + +
Sbjct: 94 ELKRRT-----GAKVAANAESAVLL-------ARGGSDDLHFGDGITYPPANADRIVMDG 141
Query: 130 EEKDVNGIKFSAY-NAGHVLGAAMFLIE 156
E V GI F+A+ AGH G+ +
Sbjct: 142 EVITVGGIVFTAHFMAGHTPGSTAWTWT 169
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 505
Score = 38.6 bits (89), Expect = 0.002
Identities = 13/97 (13%), Positives = 27/97 (27%)
Query: 15 CIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLK 74
+ + I++D P + + I ++ SH H DH G + +
Sbjct: 106 ITFIRGDSGWIVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFGGVRGLVEP 165
Query: 75 TGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLY 111
A + + + N + Y
Sbjct: 166 QQVASGAVQIIAPAGFMEAAIKENVLAGNAMMRRATY 202
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 298
Score = 38.0 bits (87), Expect = 0.002
Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 7/147 (4%)
Query: 25 IMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRCFMT 84
+++ GI + A + + Q+ LI+H H DHCG LP+ + +
Sbjct: 35 ALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHYDHCGLLPYLCPR--LPNVQVLA 92
Query: 85 HATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMD----KIETINFHEEKDVNGIKFS 140
W ++V Q+L E L ++ + + E ++
Sbjct: 93 SERTCQA-WKSESAVRVVERLNRQLLRAEQRLPEACAWDALPVRAVADGEWLELGPRHRL 151
Query: 141 AYNAGHVLGAAMFLIEIAGVKILYTGD 167
H + + L+ GD
Sbjct: 152 QVIEAHGHSDDHVVFYDVRRRRLFCGD 178
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 264
Score = 37.7 bits (86), Expect = 0.003
Identities = 15/76 (19%), Positives = 27/76 (35%)
Query: 10 EVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALP 69
G + +++ I+MD + + + I L+L +H HLDH G
Sbjct: 24 TDGIAVYVIKTSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFA 83
Query: 70 WFLLKTGFKGRCFMTH 85
+TG +
Sbjct: 84 EIKKETGAQLVAGERD 99
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755,
N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 250
Score = 36.4 bits (83), Expect = 0.007
Identities = 22/164 (13%), Positives = 49/164 (29%), Gaps = 1/164 (0%)
Query: 15 CIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLK 74
+++ ++++D + +V+ +I ++++H DH G+LP L
Sbjct: 42 AYLVKLNGANVLIDGW-KGNYAKEFIDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKT 100
Query: 75 TGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDV 134
G ++ K + E+ + M +
Sbjct: 101 IGHDVEIIASNFGKRLLEGFYGIKDVTVVKDGEEREIGGKKFKFVMTPWLHWPDTMVTYL 160
Query: 135 NGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDFSRQEDRHLMA 178
+GI FS G L + V Y ++ +
Sbjct: 161 DGILFSCDVGGGYLLPEILDDSNESVVERYLPHVTKYIVTVIGH 204
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB
{Pseudomonas putida [TaxId: 303]}
Length = 304
Score = 33.6 bits (75), Expect = 0.060
Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 3/95 (3%)
Query: 13 RSCIMLEFKNKS-IMMDCG--IHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALP 69
+S I L I+ + I L + + I+ +++ +DH L
Sbjct: 39 QSSIALSDDGVHWILCNASPDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLL 98
Query: 70 WFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNI 104
+ C + L + + N
Sbjct: 99 SLREGCPHQVWCTDMVHQDLTTGFPLFNMLSHWNG 133
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas
hydrophila, CphA [TaxId: 644]}
Length = 228
Score = 33.4 bits (75), Expect = 0.061
Identities = 17/161 (10%), Positives = 50/161 (31%), Gaps = 11/161 (6%)
Query: 8 GQEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGA 67
V + ++ ++ P + + V + ++ +++H D G
Sbjct: 18 NYYVQENSMVYFGAKGVTVVGATWTPDT-ARELHKLIKRVSRKPVLEVINTNYHTDRAGG 76
Query: 68 LPWFLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETIN 127
+ +K +T+ + SD+ ++ + + + + + +
Sbjct: 77 NAY------WKSIGAKVVSTRQTRDLMKSDWAEIVAFTRKGL----PEYPDLPLVLPNVV 126
Query: 128 FHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDF 168
+ + K A+ AG + ++LY G
Sbjct: 127 HDGDFTLQEGKVRAFYAGPAHTPDGIFVYFPDEQVLYGGCI 167
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga
maritima [TaxId: 2336]}
Length = 209
Score = 32.5 bits (73), Expect = 0.11
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 11 VGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGA 67
G +C LE + K+I+ D P + P ++ D++ SH H DH
Sbjct: 7 FGHACFALEMEGKTIVTD----PFDESV-GYPIPNV----TADVVTESHQHFDHNAH 54
Score = 27.1 bits (59), Expect = 5.0
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 6/51 (11%)
Query: 148 LGAAMFLIEIAGVKILYTGDFSRQEDRHLMAAEIPPVKPDILITESTYGTH 198
G A F +E+ G I+ + IP V D++ + H
Sbjct: 7 FGHACFALEMEGKTIVTDPFDES------VGYPIPNVTADVVTESHQHFDH 51
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus
subtilis [TaxId: 1423]}
Length = 307
Score = 32.0 bits (71), Expect = 0.20
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 8/72 (11%)
Query: 12 GRSCIMLEF---KNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGAL 68
+ + L+ + + DCG + +I+ + I+H H DH L
Sbjct: 18 NVTSVALKLLEERRSVWLFDCG--EATQHQMLHTTIKP---RKIEKIFITHMHGDHVYGL 72
Query: 69 PWFLLKTGFKGR 80
P L F+G
Sbjct: 73 PGLLGSRSFQGG 84
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal
domain {Moorella thermoacetica [TaxId: 1525]}
Length = 249
Score = 30.3 bits (67), Expect = 0.50
Identities = 19/199 (9%), Positives = 47/199 (23%), Gaps = 30/199 (15%)
Query: 22 NKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRC 81
+K+ ++D + + + ++D L+++H DH GA P +
Sbjct: 44 DKTALVDTV-YEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMELCPDAHVL 102
Query: 82 FMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSA 141
A ++ + + +
Sbjct: 103 CTQRAFDSLKAH----------------------YSHIDFNYTIVKTGTSVSLGKRSLTF 140
Query: 142 YNAGHVLGAAMFLIEIAGVKILYTGDFSRQEDRHLMAAEIPPVKPDILITESTYGTHVHE 201
A + + +L D V+ D + +
Sbjct: 141 IEAPMLHWPDSMFTYVPEEALLLPND-------AFGQHIATSVRFDDQVDAGLIMDEAAK 193
Query: 202 QREEREGRFTSLIHDIVNR 220
F++LI ++
Sbjct: 194 YYANILMPFSNLITKKLDE 212
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 29.7 bits (66), Expect = 0.82
Identities = 19/170 (11%), Positives = 57/170 (33%), Gaps = 11/170 (6%)
Query: 4 LKGAGQE--VGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFH 61
L+G+G+ + + + K + ++ + + L + +++ + ++
Sbjct: 18 LQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQL----RLLGEKVGVPVLEVMD 73
Query: 62 LDHCGALPWFLLK----TGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLE 117
+ ++ + + T I L+ + ++ + + D
Sbjct: 74 GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAM 133
Query: 118 KSMDKIETI-NFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTG 166
+ + F E+ V G+ + + GAA+ + G I + G
Sbjct: 134 TGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAG 183
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas
aeruginosa, VIM-2 [TaxId: 287]}
Length = 230
Score = 29.2 bits (64), Expect = 1.3
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 31 IHPGLSGMDALPFVDLVESD---QIDLLLISHFHLDHCGALPWF 71
I + + +E + + +HFH D G +
Sbjct: 52 IDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVL 95
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus
[TaxId: 1396]}
Length = 221
Score = 28.4 bits (62), Expect = 2.0
Identities = 12/86 (13%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
Query: 8 GQEVGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGA 67
G+ V + ++L +++D L + + V+ ++ ++I+H H D G
Sbjct: 30 GEAVPSNGLVLNTSKGLVLVDSSWDDKL-TKELIEMVEKKFQKRVTDVIITHAHADRIGG 88
Query: 68 LPWFLLKTGFKGRCFMTHATKAIYRW 93
+ + +T +
Sbjct: 89 IKTLKERGIKAHSTALTAELAKKNGY 114
>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces
viridochromogenes [TaxId: 1938]}
Length = 249
Score = 27.3 bits (60), Expect = 4.5
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 155 IEIAGVKILYTGDFSRQEDRHLMAAEIPPVKPDILITESTYGTHVHEQREEREGRFTSLI 214
+ G + + D ++A + PD+++T+ YG E+ +
Sbjct: 137 LTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYG----ERTHWEGQVPGQPV 192
Query: 215 HDIVNRGGRCL 225
++ L
Sbjct: 193 AGLLRSLASAL 203
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO),
N-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Length = 249
Score = 27.2 bits (59), Expect = 5.6
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 22 NKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPWFLLKTGFKGRC 81
K+ + D + +++ +ID L+I H LDH GALP + +
Sbjct: 42 EKTTLFDTVKAEYKGELLCG-IASVIDPKKIDYLVIQHLELDHAGALPALIEACQPEKIF 100
Query: 82 FMTHATKAIYRW 93
+ KA+
Sbjct: 101 TSSLGQKAMESH 112
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.5 bits (57), Expect = 7.5
Identities = 14/146 (9%), Positives = 38/146 (26%)
Query: 11 VGRSCIMLEFKNKSIMMDCGIHPGLSGMDALPFVDLVESDQIDLLLISHFHLDHCGALPW 70
G++ + G+ + + +
Sbjct: 14 TGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYY 73
Query: 71 FLLKTGFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHE 130
+ + T D ++V + + D++ K ++I FH
Sbjct: 74 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 133
Query: 131 EKDVNGIKFSAYNAGHVLGAAMFLIE 156
+K++ SA + + ++L
Sbjct: 134 KKNLQYYDISAKSNYNFEKPFLWLAR 159
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 26.2 bits (57), Expect = 9.6
Identities = 13/56 (23%), Positives = 20/56 (35%)
Query: 118 KSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKILYTGDFSRQED 173
+ FHE + GI + + G + + G+ I Y G R ED
Sbjct: 140 GQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIED 195
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.400
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,312,751
Number of extensions: 110905
Number of successful extensions: 306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 36
Length of query: 622
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 531
Effective length of database: 1,158,166
Effective search space: 614986146
Effective search space used: 614986146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)