Query psy8351
Match_columns 103
No_of_seqs 130 out of 1024
Neff 7.2
Searched_HMMs 46136
Date Sat Aug 17 01:30:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1782 Predicted metal-depend 99.9 2.3E-25 5E-30 175.3 8.3 96 1-102 265-363 (637)
2 COG1236 YSH1 Predicted exonucl 99.9 1.6E-24 3.4E-29 169.3 10.1 96 1-103 80-175 (427)
3 KOG1136|consensus 99.9 3.3E-22 7.1E-27 152.1 8.1 94 1-100 92-187 (501)
4 TIGR03675 arCOG00543 arCOG0054 99.8 6.3E-20 1.4E-24 149.1 11.9 96 1-102 259-357 (630)
5 KOG1137|consensus 99.8 5.7E-20 1.2E-24 145.8 5.5 93 1-99 97-189 (668)
6 KOG1135|consensus 99.6 1.2E-14 2.5E-19 117.8 8.5 97 1-103 83-183 (764)
7 KOG1138|consensus 99.0 1.6E-09 3.4E-14 86.4 7.5 87 1-93 126-242 (653)
8 TIGR00649 MG423 conserved hypo 98.5 4.1E-07 8.8E-12 71.0 6.6 53 41-99 112-166 (422)
9 KOG1361|consensus 98.2 2.4E-06 5.3E-11 68.1 5.1 54 39-98 157-211 (481)
10 PF12706 Lactamase_B_2: Beta-l 97.8 0.00011 2.3E-09 50.4 6.7 62 27-94 59-140 (194)
11 COG0595 mRNA degradation ribon 97.6 8.7E-05 1.9E-09 60.4 5.2 54 40-99 120-174 (555)
12 TIGR03307 PhnP phosphonate met 97.6 0.00028 6.1E-09 50.8 6.3 46 44-95 111-156 (238)
13 smart00849 Lactamase_B Metallo 97.3 0.00041 8.9E-09 46.5 4.7 49 41-97 99-148 (183)
14 PRK11244 phnP carbon-phosphoru 97.3 0.00062 1.3E-08 49.4 5.9 46 44-95 121-166 (250)
15 PRK00685 metal-dependent hydro 97.2 0.0011 2.4E-08 47.0 5.5 65 26-96 66-147 (228)
16 PRK11921 metallo-beta-lactamas 96.3 0.0089 1.9E-07 46.4 5.2 44 41-92 118-163 (394)
17 TIGR03413 GSH_gloB hydroxyacyl 96.1 0.016 3.5E-07 42.3 5.6 46 43-96 85-131 (248)
18 PRK11709 putative L-ascorbate 96.1 0.018 4E-07 44.6 5.9 62 28-95 141-231 (355)
19 PRK05452 anaerobic nitric oxid 95.9 0.013 2.8E-07 46.9 4.7 44 41-92 121-167 (479)
20 COG0491 GloB Zn-dependent hydr 95.8 0.024 5.3E-07 39.5 5.0 43 46-97 129-173 (252)
21 PLN02469 hydroxyacylglutathion 95.2 0.075 1.6E-06 39.3 6.1 47 43-95 89-139 (258)
22 PLN02398 hydroxyacylglutathion 94.6 0.11 2.4E-06 39.9 5.8 46 43-96 165-211 (329)
23 PF13483 Lactamase_B_3: Beta-l 94.4 0.12 2.5E-06 35.0 5.1 53 37-95 58-117 (163)
24 PLN02962 hydroxyacylglutathion 94.4 0.12 2.5E-06 38.2 5.4 45 45-95 105-154 (251)
25 PRK10241 hydroxyacylglutathion 94.0 0.14 3E-06 37.5 5.1 44 43-96 88-132 (251)
26 PF00753 Lactamase_B: Metallo- 93.5 0.16 3.5E-06 33.4 4.3 51 45-101 105-155 (194)
27 KOG0813|consensus 92.9 0.3 6.5E-06 36.6 5.4 48 43-96 95-144 (265)
28 TIGR02651 RNase_Z ribonuclease 92.8 0.44 9.6E-06 35.1 6.1 28 49-76 122-149 (299)
29 PRK04286 hypothetical protein; 92.5 0.56 1.2E-05 35.2 6.5 44 44-93 137-187 (298)
30 PRK02113 putative hydrolase; P 92.0 0.28 6E-06 35.4 4.1 45 42-96 129-174 (252)
31 TIGR02649 true_RNase_BN ribonu 90.3 0.97 2.1E-05 33.6 5.8 29 47-75 122-150 (303)
32 TIGR02108 PQQ_syn_pqqB coenzym 89.5 1.4 3.1E-05 33.3 6.1 64 25-94 104-201 (302)
33 PRK05184 pyrroloquinoline quin 87.8 1.7 3.8E-05 32.6 5.6 42 47-94 142-201 (302)
34 PRK11539 ComEC family competen 85.3 2.3 4.9E-05 36.0 5.5 50 43-98 591-646 (755)
35 TIGR00361 ComEC_Rec2 DNA inter 85.1 2.3 5E-05 35.4 5.4 51 42-98 533-589 (662)
36 KOG3772|consensus 82.6 1.2 2.7E-05 34.3 2.7 47 27-74 156-203 (325)
37 COG2220 Predicted Zn-dependent 81.8 3.4 7.4E-05 29.9 4.7 49 40-94 101-162 (258)
38 KOG0814|consensus 80.6 5.8 0.00013 28.7 5.3 41 44-92 100-141 (237)
39 cd01519 RHOD_HSP67B2 Member of 79.4 1 2.2E-05 27.8 1.1 15 59-73 26-40 (106)
40 COG4996 Predicted phosphatase 73.2 2.2 4.7E-05 29.4 1.4 47 29-75 12-69 (164)
41 cd01525 RHOD_Kc Member of the 72.0 1.4 3.1E-05 27.1 0.3 14 60-73 28-41 (105)
42 cd01445 TST_Repeats Thiosulfat 71.3 2 4.4E-05 28.6 0.9 12 62-73 52-63 (138)
43 COG2897 SseA Rhodanese-related 68.2 2.7 5.8E-05 31.9 1.1 45 30-74 14-59 (285)
44 PRK00055 ribonuclease Z; Revie 65.9 3.9 8.4E-05 29.2 1.5 37 54-96 143-179 (270)
45 cd01533 4RHOD_Repeat_2 Member 65.8 2.2 4.8E-05 26.7 0.2 43 26-73 9-51 (109)
46 smart00450 RHOD Rhodanese Homo 65.2 2.7 5.9E-05 24.7 0.5 15 59-73 15-29 (100)
47 cd01524 RHOD_Pyr_redox Member 65.2 2.4 5.1E-05 25.6 0.2 15 59-73 24-38 (90)
48 cd01534 4RHOD_Repeat_3 Member 64.6 2 4.4E-05 26.2 -0.1 13 60-72 28-40 (95)
49 COG0426 FpaA Uncharacterized f 64.2 15 0.00032 29.2 4.5 46 41-94 121-168 (388)
50 PRK09629 bifunctional thiosulf 62.8 5.2 0.00011 33.3 1.9 16 58-73 180-195 (610)
51 COG2333 ComEC Predicted hydrol 62.8 7 0.00015 29.7 2.5 57 37-99 136-198 (293)
52 cd01448 TST_Repeat_1 Thiosulfa 62.2 5.8 0.00013 25.1 1.7 16 58-73 32-47 (122)
53 cd01530 Cdc25 Cdc25 phosphatas 61.7 3 6.6E-05 27.0 0.3 15 59-73 34-48 (121)
54 cd01521 RHOD_PspE2 Member of t 60.9 3 6.5E-05 26.2 0.2 15 59-73 36-50 (110)
55 cd01520 RHOD_YbbB Member of th 59.7 4 8.6E-05 26.5 0.6 14 60-73 25-38 (128)
56 cd01529 4RHOD_Repeats Member o 59.6 3.7 8E-05 25.0 0.4 14 59-72 23-36 (96)
57 PRK02126 ribonuclease Z; Provi 59.5 41 0.00089 25.8 6.2 26 50-75 148-173 (334)
58 PRK11493 sseA 3-mercaptopyruva 59.1 3.1 6.7E-05 30.8 -0.0 14 59-72 41-54 (281)
59 cd01449 TST_Repeat_2 Thiosulfa 59.1 3.5 7.6E-05 25.9 0.2 13 61-73 38-50 (118)
60 KOG1387|consensus 56.1 4.4 9.6E-05 32.2 0.4 18 83-100 77-94 (465)
61 cd01532 4RHOD_Repeat_1 Member 55.1 3.8 8.2E-05 24.9 -0.1 15 59-73 21-35 (92)
62 cd01518 RHOD_YceA Member of th 55.0 3.7 7.9E-05 25.2 -0.2 15 60-74 29-43 (101)
63 cd01531 Acr2p Eukaryotic arsen 54.7 5.8 0.00013 24.9 0.7 15 60-74 30-44 (113)
64 PF02112 PDEase_II: cAMP phosp 54.3 37 0.0008 26.3 5.2 37 54-96 176-220 (335)
65 cd01447 Polysulfide_ST Polysul 52.7 7.1 0.00015 23.6 0.9 13 60-72 27-39 (103)
66 PLN02720 complex II 52.5 20 0.00043 24.4 3.0 28 12-39 23-50 (140)
67 TIGR03865 PQQ_CXXCW PQQ-depend 52.4 7.2 0.00016 26.7 1.0 13 60-72 76-88 (162)
68 cd01526 RHOD_ThiF Member of th 52.0 5.7 0.00012 25.4 0.4 41 28-73 9-49 (122)
69 cd00158 RHOD Rhodanese Homolog 51.9 5.1 0.00011 23.3 0.1 15 60-74 22-36 (89)
70 PLN02723 3-mercaptopyruvate su 51.8 5 0.00011 30.4 0.1 13 60-72 58-70 (320)
71 PF00581 Rhodanese: Rhodanese- 51.4 4 8.7E-05 24.9 -0.4 14 60-73 25-38 (113)
72 cd01535 4RHOD_Repeat_4 Member 48.7 5.7 0.00012 26.7 -0.0 12 60-71 23-34 (145)
73 PF11858 DUF3378: Domain of un 48.4 51 0.0011 20.2 4.2 37 30-66 8-51 (81)
74 cd01446 DSP_MapKP N-terminal r 47.3 6.8 0.00015 25.3 0.2 15 60-74 29-43 (132)
75 cd01527 RHOD_YgaP Member of th 46.4 6.1 0.00013 24.0 -0.2 14 60-73 28-41 (99)
76 cd01523 RHOD_Lact_B Member of 46.0 5.6 0.00012 24.3 -0.4 14 60-73 27-40 (100)
77 PRK00162 glpE thiosulfate sulf 45.4 7.5 0.00016 24.2 0.1 40 27-72 5-44 (108)
78 TIGR02981 phageshock_pspE phag 45.3 7.3 0.00016 24.6 0.1 14 60-73 30-43 (101)
79 PRK14051 negative regulator Gr 45.2 45 0.00097 22.0 3.7 37 55-97 8-49 (123)
80 cd01443 Cdc25_Acr2p Cdc25 enzy 44.6 10 0.00022 23.8 0.7 41 29-73 4-47 (113)
81 cd01522 RHOD_1 Member of the R 44.5 8.7 0.00019 24.5 0.3 15 60-74 27-42 (117)
82 cd01528 RHOD_2 Member of the R 42.3 8.4 0.00018 23.6 0.0 13 60-72 29-41 (101)
83 KOG2121|consensus 38.7 31 0.00068 29.6 2.8 37 53-95 594-631 (746)
84 PF13464 DUF4115: Domain of un 37.6 59 0.0013 19.1 3.3 28 67-100 7-34 (77)
85 CHL00130 rbcS ribulose-1,5-bis 36.7 61 0.0013 22.1 3.5 63 26-89 53-129 (138)
86 cd01444 GlpE_ST GlpE sulfurtra 35.6 14 0.00031 22.0 0.3 11 63-73 33-43 (96)
87 PRK10287 thiosulfate:cyanide s 35.5 13 0.00028 23.7 0.1 15 59-73 31-45 (104)
88 PF09923 DUF2155: Uncharacteri 35.4 89 0.0019 19.6 3.9 35 43-77 17-57 (90)
89 COG2208 RsbU Serine phosphatas 35.0 1.4E+02 0.003 22.8 5.7 41 28-68 209-258 (367)
90 PF14597 Lactamase_B_5: Metall 33.4 41 0.00089 24.3 2.3 31 53-92 107-137 (199)
91 COG2248 Predicted hydrolase (m 33.0 1.4E+02 0.003 22.9 5.2 41 47-93 139-186 (304)
92 KOG1484|consensus 31.4 1.4E+02 0.003 23.5 5.1 63 10-76 256-318 (354)
93 KOG0057|consensus 31.1 68 0.0015 26.9 3.5 51 43-100 345-395 (591)
94 KOG0272|consensus 30.2 26 0.00056 28.3 1.0 17 55-71 265-281 (459)
95 KOG3396|consensus 29.9 1.4E+02 0.003 20.6 4.3 43 29-75 34-76 (150)
96 KOG1529|consensus 28.2 21 0.00045 27.2 0.2 17 57-73 192-208 (286)
97 PRK11784 tRNA 2-selenouridine 27.7 20 0.00043 27.8 -0.0 15 60-74 27-41 (345)
98 PF10742 DUF2555: Protein of u 27.6 46 0.00099 19.3 1.5 25 27-51 7-31 (57)
99 KOG1180|consensus 26.0 31 0.00068 29.1 0.8 43 32-74 416-468 (678)
100 TIGR03167 tRNA_sel_U_synt tRNA 25.8 24 0.00051 27.0 0.1 15 60-74 14-28 (311)
101 PLN02160 thiosulfate sulfurtra 25.4 23 0.00051 23.4 -0.0 36 26-68 14-49 (136)
102 PF07563 DUF1541: Protein of u 24.7 1.2E+02 0.0025 17.4 2.8 28 60-93 8-37 (53)
103 COG1234 ElaC Metal-dependent h 23.0 11 0.00024 28.2 -2.1 38 54-97 161-204 (292)
104 PF12568 DUF3749: Acetyltransf 22.2 1.9E+02 0.004 19.5 3.8 25 53-77 37-61 (128)
105 KOG1136|consensus 21.6 1.7E+02 0.0036 23.5 4.0 28 53-80 2-29 (501)
106 PF08844 DUF1815: Domain of un 20.8 2.5E+02 0.0053 18.1 4.5 39 53-95 29-69 (105)
107 PF14811 TPD: Protein of unkno 20.6 2.9E+02 0.0062 18.8 4.7 42 25-66 47-89 (139)
108 PF01241 PSI_PSAK: Photosystem 20.4 29 0.00063 21.5 -0.3 11 61-71 62-72 (81)
109 PF11141 DUF2914: Protein of u 20.0 1.4E+02 0.0029 17.4 2.6 21 53-73 44-65 (66)
No 1
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.92 E-value=2.3e-25 Score=175.26 Aligned_cols=96 Identities=27% Similarity=0.429 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHhhcccccCCcEEEe-CCEEEEEEeCCccccceEEEEEECC--
Q psy8351 1 MTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDV-NGIKFSAYNAGHVLGAAMFLIEIAG-- 77 (103)
Q Consensus 1 ~T~~T~~l~~~lL~D~~ki~~~~~~~p~y~~~dv~~~~~~~~~v~y~~~~~i-~~~~v~~~~AGHIlGsa~~~i~~~~-- 77 (103)
||+||+||+-+|+.|++++.++++..|||+++||++++++.++++|++..+| +++++|||||||||||||.++-+++
T Consensus 265 ~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NAGHILGSA~~HlHIGdGl 344 (637)
T COG1782 265 CTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGL 344 (637)
T ss_pred eCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecccchhcceeeEEEecCCc
Confidence 8999999999999999999999999999999999999999999999999999 6999999999999999999999965
Q ss_pred eEEEeeeeeEEEecCCCCCccceeC
Q psy8351 78 VKIARYLFLWYQVNVNQNNQEFRIG 102 (103)
Q Consensus 78 ~~i~~~~~~~ysgD~~~~~~~~~~g 102 (103)
.++ +|||||++..+++.++
T Consensus 345 yNi------~yTGDfk~~~trLl~~ 363 (637)
T COG1782 345 YNI------VYTGDFKFEKTRLLEP 363 (637)
T ss_pred eeE------EEecccccceeeecCh
Confidence 477 9999999999998765
No 2
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.6e-24 Score=169.26 Aligned_cols=96 Identities=33% Similarity=0.575 Sum_probs=91.1
Q ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHhhcccccCCcEEEeCCEEEEEEeCCccccceEEEEEECCeEE
Q psy8351 1 MTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKI 80 (103)
Q Consensus 1 ~T~~T~~l~~~lL~D~~ki~~~~~~~p~y~~~dv~~~~~~~~~v~y~~~~~i~~~~v~~~~AGHIlGsa~~~i~~~~~~i 80 (103)
||+||++++++||.|+++++.. +..++|+++|+++++.++++++|++++++++++|++||||||||||+|.++.++.+|
T Consensus 80 aT~~T~~l~~~~l~d~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~AGHilGsa~~~le~~~~~i 158 (427)
T COG1236 80 ATPPTAALLKVLLGDSLKLAEG-PDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNAGHILGSAAILLEVDGGRI 158 (427)
T ss_pred eccCHHHHHHHHHHHHHhhhcC-CCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEecCCCccceeEEEEEeCCceE
Confidence 6999999999999999999964 567899999999999999999999999999999999999999999999999999999
Q ss_pred EeeeeeEEEecCCCCCccceeCC
Q psy8351 81 ARYLFLWYQVNVNQNNQEFRIGT 103 (103)
Q Consensus 81 ~~~~~~~ysgD~~~~~~~~~~g~ 103 (103)
+||||++..+.++++|.
T Consensus 159 ------lytGD~~~~~~~l~~~a 175 (427)
T COG1236 159 ------LYTGDVKRRKDRLLNGA 175 (427)
T ss_pred ------EEEeccCCCcCCCCCcc
Confidence 99999999999998874
No 3
>KOG1136|consensus
Probab=99.87 E-value=3.3e-22 Score=152.15 Aligned_cols=94 Identities=37% Similarity=0.557 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHHHHhhhhc-CCCCCCCCHHHHHHHHhhcccccCCcEEEeC-CEEEEEEeCCccccceEEEEEECCe
Q psy8351 1 MTHATKAIYRWLLSDYIKVSNI-STEQMLYTESDLEKSMDKIETINFHEEKDVN-GIKFSAYNAGHVLGAAMFLIEIAGV 78 (103)
Q Consensus 1 ~T~~T~~l~~~lL~D~~ki~~~-~~~~p~y~~~dv~~~~~~~~~v~y~~~~~i~-~~~v~~~~AGHIlGsa~~~i~~~~~ 78 (103)
||.||+++|++||+|+.|++-. +++..+|+.+|+.+|+++++++..+|+++++ ++.++.|.|||+|||||+++..++.
T Consensus 92 Mt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYAGHVLGAaMf~ikvGd~ 171 (501)
T KOG1136|consen 92 MTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYAGHVLGAAMFYIKVGDQ 171 (501)
T ss_pred EecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeeeecccccceeEEEEEecce
Confidence 6899999999999999999865 4677899999999999999999999999995 8999999999999999999999999
Q ss_pred EEEeeeeeEEEecCCCCCccce
Q psy8351 79 KIARYLFLWYQVNVNQNNQEFR 100 (103)
Q Consensus 79 ~i~~~~~~~ysgD~~~~~~~~~ 100 (103)
++ +||||+|.++.|.+
T Consensus 172 sv------vYTGDYnmTpDrHL 187 (501)
T KOG1136|consen 172 SV------VYTGDYNMTPDRHL 187 (501)
T ss_pred eE------EEecCccCCccccc
Confidence 99 99999999988754
No 4
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.83 E-value=6.3e-20 Score=149.07 Aligned_cols=96 Identities=26% Similarity=0.438 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHhhcccccCCcEEEe-CCEEEEEEeCCccccceEEEEEECC--
Q psy8351 1 MTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDV-NGIKFSAYNAGHVLGAAMFLIEIAG-- 77 (103)
Q Consensus 1 ~T~~T~~l~~~lL~D~~ki~~~~~~~p~y~~~dv~~~~~~~~~v~y~~~~~i-~~~~v~~~~AGHIlGsa~~~i~~~~-- 77 (103)
||+||++++++++.|+++++..++..|+|+.+|+++++.++++++|++++++ +|++++|++|||+||||++.++.++
T Consensus 259 ~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~AGHilGsa~~~~~i~dg~ 338 (630)
T TIGR03675 259 CTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNAGHILGSAIAHLHIGDGL 338 (630)
T ss_pred ecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecCccccCceEEEEEECCCC
Confidence 7999999999999999999876667799999999999999999999999999 6899999999999999999998754
Q ss_pred eEEEeeeeeEEEecCCCCCccceeC
Q psy8351 78 VKIARYLFLWYQVNVNQNNQEFRIG 102 (103)
Q Consensus 78 ~~i~~~~~~~ysgD~~~~~~~~~~g 102 (103)
.++ +||||++..+++++++
T Consensus 339 ~~I------vYTGD~~~~~~~ll~~ 357 (630)
T TIGR03675 339 YNI------VYTGDFKYEKTRLLDP 357 (630)
T ss_pred EEE------EEeCCCCCCCCcCccc
Confidence 577 9999999998887654
No 5
>KOG1137|consensus
Probab=99.80 E-value=5.7e-20 Score=145.81 Aligned_cols=93 Identities=61% Similarity=1.009 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHhhcccccCCcEEEeCCEEEEEEeCCccccceEEEEEECCeEE
Q psy8351 1 MTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKI 80 (103)
Q Consensus 1 ~T~~T~~l~~~lL~D~~ki~~~~~~~p~y~~~dv~~~~~~~~~v~y~~~~~i~~~~v~~~~AGHIlGsa~~~i~~~~~~i 80 (103)
||+||+++++.+|.|+.++++..++..+|++.|+.+++.++++++|++.++++|+++.+|.|||++||||+.+++.+-++
T Consensus 97 mth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p~~aGhVlgacMf~veiagv~l 176 (668)
T KOG1137|consen 97 MTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNGIKFWPYHAGHVLGACMFMVEIAGVRL 176 (668)
T ss_pred EecchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccCCeEEEeeccchhhhheeeeeeeceEEE
Confidence 69999999999999999999887777899999999999999999999999999999999999999999999999999999
Q ss_pred EeeeeeEEEecCCCCCccc
Q psy8351 81 ARYLFLWYQVNVNQNNQEF 99 (103)
Q Consensus 81 ~~~~~~~ysgD~~~~~~~~ 99 (103)
+||||++-...|.
T Consensus 177 ------LyTGd~sreeDrh 189 (668)
T KOG1137|consen 177 ------LYTGDYSREEDRH 189 (668)
T ss_pred ------Eeccccchhhccc
Confidence 9999998776554
No 6
>KOG1135|consensus
Probab=99.56 E-value=1.2e-14 Score=117.84 Aligned_cols=97 Identities=23% Similarity=0.435 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHhhcccccCCcEEEeC----CEEEEEEeCCccccceEEEEEEC
Q psy8351 1 MTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVN----GIKFSAYNAGHVLGAAMFLIEIA 76 (103)
Q Consensus 1 ~T~~T~~l~~~lL~D~~ki~~~~~~~p~y~~~dv~~~~~~~~~v~y~~~~~i~----~~~v~~~~AGHIlGsa~~~i~~~ 76 (103)
||-|+..|.++-+.|..+-...-+...+|+.+||+.+|++++++.|+|++.+. |+++++|||||.+|++.|.|.-.
T Consensus 83 AT~PV~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI~k~ 162 (764)
T KOG1135|consen 83 ATLPVIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKISKV 162 (764)
T ss_pred EecchhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEEEec
Confidence 58899999999999987655433467899999999999999999999999993 78999999999999999999998
Q ss_pred CeEEEeeeeeEEEecCCCCCccceeCC
Q psy8351 77 GVKIARYLFLWYQVNVNQNNQEFRIGT 103 (103)
Q Consensus 77 ~~~i~~~~~~~ysgD~~~~~~~~~~g~ 103 (103)
+.+| +|..|||...+++++|.
T Consensus 163 ~E~i------vYavd~NHkKe~HLNG~ 183 (764)
T KOG1135|consen 163 GEDI------VYAVDFNHKKERHLNGC 183 (764)
T ss_pred CceE------EEEEecccchhcccCCc
Confidence 8999 99999999999999884
No 7
>KOG1138|consensus
Probab=98.99 E-value=1.6e-09 Score=86.37 Aligned_cols=87 Identities=23% Similarity=0.393 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHHHHHhhhhc-----------C------------------CCCCCCCHHHHHHHHhhcccccCCcEEE
Q psy8351 1 MTHATKAIYRWLLSDYIKVSNI-----------S------------------TEQMLYTESDLEKSMDKIETINFHEEKD 51 (103)
Q Consensus 1 ~T~~T~~l~~~lL~D~~ki~~~-----------~------------------~~~p~y~~~dv~~~~~~~~~v~y~~~~~ 51 (103)
||+||.++.++|++|....-+. + .+.+.|+.+|++.|+++++.+.|+|+++
T Consensus 126 ~TE~t~qiGrllMEelv~fier~p~~~S~~~Wk~k~~~~~lpsplk~~~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekid 205 (653)
T KOG1138|consen 126 ATEPTAQIGRLLMEELVSFIERFPKASSAPLWKKKLDSELLPSPLKKAVFLGSWRRLYSLDDVESCLSKVQGVGFAEKID 205 (653)
T ss_pred EechHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhcCCCchhhccccceeeeeehhHHHHHHHhheecccceeee
Confidence 6999999999999996653210 0 2457899999999999999999999999
Q ss_pred e-CCEEEEEEeCCccccceEEEEEECCeEEEeeeeeEEEecCC
Q psy8351 52 V-NGIKFSAYNAGHVLGAAMFLIEIAGVKIARYLFLWYQVNVN 93 (103)
Q Consensus 52 i-~~~~v~~~~AGHIlGsa~~~i~~~~~~i~~~~~~~ysgD~~ 93 (103)
+ +-+.||+..+||-+|||.|.|.....++ -|-.|=+
T Consensus 206 lfga~~vtplsSG~~lGSsnW~I~t~nek~------sYvS~Ss 242 (653)
T KOG1138|consen 206 LFGALIVTPLSSGYDLGSSNWLINTPNEKL------SYVSGSS 242 (653)
T ss_pred ccceEEEEeccccccccccceEEecCCcce------EEEecCc
Confidence 8 5799999999999999999999988888 6655533
No 8
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=98.47 E-value=4.1e-07 Score=70.96 Aligned_cols=53 Identities=13% Similarity=0.092 Sum_probs=46.4
Q ss_pred cccccCCcEEEeC-CEEEEEEeCCc-cccceEEEEEECCeEEEeeeeeEEEecCCCCCccc
Q psy8351 41 IETINFHEEKDVN-GIKFSAYNAGH-VLGAAMFLIEIAGVKIARYLFLWYQVNVNQNNQEF 99 (103)
Q Consensus 41 ~~~v~y~~~~~i~-~~~v~~~~AGH-IlGsa~~~i~~~~~~i~~~~~~~ysgD~~~~~~~~ 99 (103)
+.+++++++++++ ++++++++++| +|||+++.++.+++++ +||||+...++..
T Consensus 112 ~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~~~~~i------vytGD~~~~~~~~ 166 (422)
T TIGR00649 112 LLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHTPLGYI------VYTGDFKFDNTPV 166 (422)
T ss_pred eEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEeCCcEE------EECCCcCCCCCcc
Confidence 4567889999995 69999999999 8999999999888888 9999999876554
No 9
>KOG1361|consensus
Probab=98.19 E-value=2.4e-06 Score=68.07 Aligned_cols=54 Identities=24% Similarity=0.466 Sum_probs=47.8
Q ss_pred hhcccccCCcEEEeCCEEEEEEeCCccccceEEEEEEC-CeEEEeeeeeEEEecCCCCCcc
Q psy8351 39 DKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIA-GVKIARYLFLWYQVNVNQNNQE 98 (103)
Q Consensus 39 ~~~~~v~y~~~~~i~~~~v~~~~AGHIlGsa~~~i~~~-~~~i~~~~~~~ysgD~~~~~~~ 98 (103)
..++.++.+|++.++++.|+.++|-|.|||+|+.++.. +..+ +|||||+..+..
T Consensus 157 ~~i~~l~l~~~~~i~~~~vt~ldAnHCPGa~mf~F~~~~~~~~------lhtGDFR~s~~m 211 (481)
T KOG1361|consen 157 QSIQALDLNQPLEIPGIQVTLLDANHCPGAVMFLFELSFGPCI------LHTGDFRASADM 211 (481)
T ss_pred hhceeecCCCceeecceEEEEeccccCCCceEEEeecCCCceE------EecCCcccChhh
Confidence 45678899999999999999999999999999999975 4577 999999988764
No 10
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=97.79 E-value=0.00011 Score=50.45 Aligned_cols=62 Identities=24% Similarity=0.376 Sum_probs=49.4
Q ss_pred CCCCHHHHHHHHh--h--------------cccccCCcEEEeCCEEEEEEeCCccccceE----EEEEECCeEEEeeeee
Q psy8351 27 MLYTESDLEKSMD--K--------------IETINFHEEKDVNGIKFSAYNAGHVLGAAM----FLIEIAGVKIARYLFL 86 (103)
Q Consensus 27 p~y~~~dv~~~~~--~--------------~~~v~y~~~~~i~~~~v~~~~AGHIlGsa~----~~i~~~~~~i~~~~~~ 86 (103)
+.|..+++.+.+. . +..+.-++.+++++++|+++++.|..++.. +.|+.+++++
T Consensus 59 ~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~H~~~~~~~~~g~~i~~~~~~i------ 132 (194)
T PF12706_consen 59 PIYGPPETKEFLREYKFGILDLYPEEDNFDIIEISPGDEFEIGDFRITPFPANHGPPSYGGNKGFVIEPDGKKI------ 132 (194)
T ss_dssp EEEECHHHHHHHHHHHHTHHTTCCTTSGEEEEEECTTEEEEETTEEEEEEEEESSSCCEEECCEEEEEETTEEE------
T ss_pred eEEecHHHHHHHHhhhcccccccccccceeEEEeccCceEEeceEEEEEEeccccccccccCceEEEecCCcce------
Confidence 5566666666555 2 233444567888999999999999999998 9999999999
Q ss_pred EEEecCCC
Q psy8351 87 WYQVNVNQ 94 (103)
Q Consensus 87 ~ysgD~~~ 94 (103)
+|+||.+.
T Consensus 133 ~~~gD~~~ 140 (194)
T PF12706_consen 133 FYSGDTNY 140 (194)
T ss_dssp EEETSSSS
T ss_pred EEeeccch
Confidence 99999987
No 11
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=97.65 E-value=8.7e-05 Score=60.39 Aligned_cols=54 Identities=9% Similarity=0.153 Sum_probs=48.7
Q ss_pred hcccccCCcEEEeCCEEEEEEeCCc-cccceEEEEEECCeEEEeeeeeEEEecCCCCCccc
Q psy8351 40 KIETINFHEEKDVNGIKFSAYNAGH-VLGAAMFLIEIAGVKIARYLFLWYQVNVNQNNQEF 99 (103)
Q Consensus 40 ~~~~v~y~~~~~i~~~~v~~~~AGH-IlGsa~~~i~~~~~~i~~~~~~~ysgD~~~~~~~~ 99 (103)
.+..++.+..++++++.|+|++.-| ||+|+.+.|..+...| +|||||.+.+.+.
T Consensus 120 ~~~ev~~~~~i~~~~~~v~f~~vtHSIPds~g~~i~Tp~G~I------v~TGDFk~d~~~~ 174 (555)
T COG0595 120 ELHEVKPGSEIKFGSFEVEFFPVTHSIPDSLGIVIKTPEGNI------VYTGDFKFDPTPV 174 (555)
T ss_pred ceEEeCCCCeEEeCcEEEEEEeecccCccceEEEEECCCccE------EEeCCEEecCCcC
Confidence 4567788888999999999999999 9999999999999999 9999999988654
No 12
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=97.55 E-value=0.00028 Score=50.80 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=41.2
Q ss_pred ccCCcEEEeCCEEEEEEeCCccccceEEEEEECCeEEEeeeeeEEEecCCCC
Q psy8351 44 INFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKIARYLFLWYQVNVNQN 95 (103)
Q Consensus 44 v~y~~~~~i~~~~v~~~~AGHIlGsa~~~i~~~~~~i~~~~~~~ysgD~~~~ 95 (103)
+..++++++++++|+++++.|..++..+.|+.+++++ +|+||....
T Consensus 111 ~~~~~~~~~~~~~i~~~~~~H~~~~~g~~i~~~~~~i------~y~gDt~~~ 156 (238)
T TIGR03307 111 LEAFEPFDLGGLRVTPLPLVHSKLTFGYLLETDGQRV------AYLTDTAGL 156 (238)
T ss_pred ccCCceEEECCEEEEEEecCCCCcceEEEEecCCcEE------EEEecCCCC
Confidence 5567888899999999999999899999999999999 999998653
No 13
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=97.34 E-value=0.00041 Score=46.54 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=38.5
Q ss_pred cccccCCcEEEeCCEEEEEEeC-CccccceEEEEEECCeEEEeeeeeEEEecCCCCCc
Q psy8351 41 IETINFHEEKDVNGIKFSAYNA-GHVLGAAMFLIEIAGVKIARYLFLWYQVNVNQNNQ 97 (103)
Q Consensus 41 ~~~v~y~~~~~i~~~~v~~~~A-GHIlGsa~~~i~~~~~~i~~~~~~~ysgD~~~~~~ 97 (103)
+..+..++++++++.+++++++ ||.+|++.+.++ +.++ +|+||+....+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~--~~~v------l~~gD~~~~~~ 148 (183)
T smart00849 99 DRTLKDGEELDLGGLELEVIHTPGHTPGSIVLYLP--EGKI------LFTGDLLFSGG 148 (183)
T ss_pred ceecCCCCEEEeCCceEEEEECCCCCCCcEEEEEC--CCCE------EEECCeeeccC
Confidence 4456778888898788877777 999999986654 4667 99999988765
No 14
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=97.34 E-value=0.00062 Score=49.43 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=40.6
Q ss_pred ccCCcEEEeCCEEEEEEeCCccccceEEEEEECCeEEEeeeeeEEEecCCCC
Q psy8351 44 INFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKIARYLFLWYQVNVNQN 95 (103)
Q Consensus 44 v~y~~~~~i~~~~v~~~~AGHIlGsa~~~i~~~~~~i~~~~~~~ysgD~~~~ 95 (103)
+.-++++++++++|+++++.|-.++..+.|+.+++++ +||||....
T Consensus 121 l~~~~~~~~~~~~I~~~~~~H~~~s~g~~i~~~~~~i------~ysgDt~~~ 166 (250)
T PRK11244 121 LEPFEPFDLGGLQVTPLPLNHSKLTFGYLLETAHSRV------AYLTDTVGL 166 (250)
T ss_pred cCCCCCeeECCEEEEEEeeCCCcceeEEEEecCCeEE------EEEcCCCCC
Confidence 4456788899999999999999899999999999999 999998754
No 15
>PRK00685 metal-dependent hydrolase; Provisional
Probab=97.16 E-value=0.0011 Score=47.00 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=49.2
Q ss_pred CCCCCHHHHHHHHh-----hcccccCCcEEEeCCEEEEEEeCCcccc------------ceEEEEEECCeEEEeeeeeEE
Q psy8351 26 QMLYTESDLEKSMD-----KIETINFHEEKDVNGIKFSAYNAGHVLG------------AAMFLIEIAGVKIARYLFLWY 88 (103)
Q Consensus 26 ~p~y~~~dv~~~~~-----~~~~v~y~~~~~i~~~~v~~~~AGHIlG------------sa~~~i~~~~~~i~~~~~~~y 88 (103)
.+.|...++.+.++ ++..++.++++++++++|++.++-|-.. +..+.|+.+++++ +|
T Consensus 66 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~~~~~i------~~ 139 (228)
T PRK00685 66 ATVIANAELANYLSEKGVEKTHPMNIGGTVEFDGGKVKLTPALHSSSFIDEDGITYLGNPTGFVITFEGKTI------YH 139 (228)
T ss_pred CEEEEeHHHHHHHHhcCCCceeeccCCCcEEECCEEEEEEEEEcCCCCcCCCCcccCCCceEEEEEECCeEE------EE
Confidence 45566666666554 3456677888999999999999999443 4778899999988 99
Q ss_pred EecCCCCC
Q psy8351 89 QVNVNQNN 96 (103)
Q Consensus 89 sgD~~~~~ 96 (103)
+||.....
T Consensus 140 ~GDt~~~~ 147 (228)
T PRK00685 140 AGDTGLFS 147 (228)
T ss_pred ecCccchh
Confidence 99987543
No 16
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=96.29 E-value=0.0089 Score=46.41 Aligned_cols=44 Identities=9% Similarity=0.163 Sum_probs=35.8
Q ss_pred cccccCCcEEEeCCEEEEEEeCC--ccccceEEEEEECCeEEEeeeeeEEEecC
Q psy8351 41 IETINFHEEKDVNGIKFSAYNAG--HVLGAAMFLIEIAGVKIARYLFLWYQVNV 92 (103)
Q Consensus 41 ~~~v~y~~~~~i~~~~v~~~~AG--HIlGsa~~~i~~~~~~i~~~~~~~ysgD~ 92 (103)
++.++.++++++++.+++++++. |.+|++++.++ +.++ +||||.
T Consensus 118 ~~~v~~g~~l~lG~~~l~~i~tP~~H~p~~~~~y~~--~~~v------LFsgD~ 163 (394)
T PRK11921 118 FVVVKTGDRLEIGSNELIFIEAPMLHWPDSMFTYLT--GDNI------LFSNDA 163 (394)
T ss_pred eEEeCCCCEEeeCCeEEEEEeCCCCCCCCceEEEEc--CCCE------EEecCc
Confidence 34567788899999999999654 99999998874 4567 999997
No 17
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=96.12 E-value=0.016 Score=42.31 Aligned_cols=46 Identities=13% Similarity=0.299 Sum_probs=35.4
Q ss_pred cccCCcEEEeCCEEEEEEe-CCccccceEEEEEECCeEEEeeeeeEEEecCCCCC
Q psy8351 43 TINFHEEKDVNGIKFSAYN-AGHVLGAAMFLIEIAGVKIARYLFLWYQVNVNQNN 96 (103)
Q Consensus 43 ~v~y~~~~~i~~~~v~~~~-AGHIlGsa~~~i~~~~~~i~~~~~~~ysgD~~~~~ 96 (103)
.+.-++.+++++.+++++. .||.+|+..+.++ +.++ +||||.-+.+
T Consensus 85 ~v~~g~~~~~g~~~i~v~~tpGHT~g~i~~~~~--~~~~------lftGDtl~~~ 131 (248)
T TIGR03413 85 PVKDGDTVTLGGLEFEVLAVPGHTLGHIAYYLP--DSPA------LFCGDTLFSA 131 (248)
T ss_pred EeCCCCEEEECCEEEEEEECCCCCcccEEEEEC--CCCE------EEEcCccccC
Confidence 4555778888888888776 5899999888775 3456 9999986654
No 18
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=96.07 E-value=0.018 Score=44.55 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=46.8
Q ss_pred CCCHHHHHHHH-------hhcccccCCcEEEeCCEEEEEEeCCc-----------cc-----------cceEEEEEECCe
Q psy8351 28 LYTESDLEKSM-------DKIETINFHEEKDVNGIKFSAYNAGH-----------VL-----------GAAMFLIEIAGV 78 (103)
Q Consensus 28 ~y~~~dv~~~~-------~~~~~v~y~~~~~i~~~~v~~~~AGH-----------Il-----------Gsa~~~i~~~~~ 78 (103)
++..+.+.+.+ .+++.++.++++++++++|++.+|-| -. .++.+.|+.+++
T Consensus 141 ~v~p~~~~~~~~~~Gvp~~rv~~v~~Ge~i~ig~v~It~lpa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~ 220 (355)
T PRK11709 141 FIGPQACVDLWIGWGVPKERCIVVKPGDVVKVKDIKIHALDSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGG 220 (355)
T ss_pred EEEcHHHHHHHHhcCCCcceEEEecCCCcEEECCEEEEEEeccccccccccccccccccccccccCCcceEEEEEEeCCe
Confidence 45555555543 24667888999999999999999943 21 247789999999
Q ss_pred EEEeeeeeEEEecCCCC
Q psy8351 79 KIARYLFLWYQVNVNQN 95 (103)
Q Consensus 79 ~i~~~~~~~ysgD~~~~ 95 (103)
++ +|+||-+..
T Consensus 221 tv------y~sGDT~~~ 231 (355)
T PRK11709 221 NI------YHSGDSHYS 231 (355)
T ss_pred EE------EEeCCCCcc
Confidence 99 999998764
No 19
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=95.95 E-value=0.013 Score=46.92 Aligned_cols=44 Identities=11% Similarity=0.216 Sum_probs=36.1
Q ss_pred cccccCCcEEEeC-CEEEEEEeC--CccccceEEEEEECCeEEEeeeeeEEEecC
Q psy8351 41 IETINFHEEKDVN-GIKFSAYNA--GHVLGAAMFLIEIAGVKIARYLFLWYQVNV 92 (103)
Q Consensus 41 ~~~v~y~~~~~i~-~~~v~~~~A--GHIlGsa~~~i~~~~~~i~~~~~~~ysgD~ 92 (103)
++.++.++.++++ +.+++|+++ +|-||+++++++ +.++ +||||+
T Consensus 121 ~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~~--~~~v------LFsgD~ 167 (479)
T PRK05452 121 FNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLT--GDAV------LFSNDA 167 (479)
T ss_pred EEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEEc--CCCE------EEeccc
Confidence 3566788899997 578999998 599999999875 5567 999996
No 20
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=95.75 E-value=0.024 Score=39.47 Aligned_cols=43 Identities=23% Similarity=0.386 Sum_probs=34.3
Q ss_pred CCcEEEeCC--EEEEEEeCCccccceEEEEEECCeEEEeeeeeEEEecCCCCCc
Q psy8351 46 FHEEKDVNG--IKFSAYNAGHVLGAAMFLIEIAGVKIARYLFLWYQVNVNQNNQ 97 (103)
Q Consensus 46 y~~~~~i~~--~~v~~~~AGHIlGsa~~~i~~~~~~i~~~~~~~ysgD~~~~~~ 97 (103)
-++.+.+++ +++-.-+ ||.+|+..+.++.++ + +|+||.-....
T Consensus 129 ~~~~~~~~~~~~~~i~tp-GHT~g~~~~~~~~~~--~------l~~gD~~~~~~ 173 (252)
T COG0491 129 DGDELDLGGLELEVLHTP-GHTPGHIVFLLEDGG--V------LFTGDTLFAGD 173 (252)
T ss_pred CCCEEEecCeEEEEEECC-CCCCCeEEEEECCcc--E------EEecceeccCC
Confidence 455666765 8888888 999999999988555 7 99999887764
No 21
>PLN02469 hydroxyacylglutathione hydrolase
Probab=95.18 E-value=0.075 Score=39.28 Aligned_cols=47 Identities=6% Similarity=0.047 Sum_probs=32.2
Q ss_pred cccCCcEEEeCC-EEEEEEe-CCccccceEEEEEEC--CeEEEeeeeeEEEecCCCC
Q psy8351 43 TINFHEEKDVNG-IKFSAYN-AGHVLGAAMFLIEIA--GVKIARYLFLWYQVNVNQN 95 (103)
Q Consensus 43 ~v~y~~~~~i~~-~~v~~~~-AGHIlGsa~~~i~~~--~~~i~~~~~~~ysgD~~~~ 95 (103)
.+.-++.+.+++ ..++.+. -||.+|+.+++++.. +..+ +||||.-+.
T Consensus 89 ~v~~gd~i~lg~~~~~~vi~tPGHT~ghi~~~~~~~~~~~~~------lFtGDtLf~ 139 (258)
T PLN02469 89 PVENGDKLSLGKDVNILALHTPCHTKGHISYYVTGKEGEDPA------VFTGDTLFI 139 (258)
T ss_pred EeCCCCEEEECCceEEEEEECCCCCCCCEEEEeccCCCCCCE------EEecCcccC
Confidence 344567777864 5555544 699999999988642 2346 999995443
No 22
>PLN02398 hydroxyacylglutathione hydrolase
Probab=94.59 E-value=0.11 Score=39.94 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=34.4
Q ss_pred cccCCcEEEeCCEEEEEEeC-CccccceEEEEEECCeEEEeeeeeEEEecCCCCC
Q psy8351 43 TINFHEEKDVNGIKFSAYNA-GHVLGAAMFLIEIAGVKIARYLFLWYQVNVNQNN 96 (103)
Q Consensus 43 ~v~y~~~~~i~~~~v~~~~A-GHIlGsa~~~i~~~~~~i~~~~~~~ysgD~~~~~ 96 (103)
.+.-++++.++|.+++.+.. ||.+|..++.+. +..+ +||||.-+..
T Consensus 165 ~v~dGd~i~lgg~~l~vi~tPGHT~GhI~~~~~--~~~v------LFtGDtLf~~ 211 (329)
T PLN02398 165 VLKDGDKWMFAGHEVLVMETPGHTRGHISFYFP--GSGA------IFTGDTLFSL 211 (329)
T ss_pred EeCCCCEEEECCeEEEEEeCCCcCCCCEEEEEC--CCCE------EEECCCcCCC
Confidence 44556778888888877655 999999988764 3346 9999987654
No 23
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=94.44 E-value=0.12 Score=34.97 Aligned_cols=53 Identities=25% Similarity=0.229 Sum_probs=41.0
Q ss_pred HHhhcccccCCcEEEeCCEEEEEEeCCcc-------ccceEEEEEECCeEEEeeeeeEEEecCCCC
Q psy8351 37 SMDKIETINFHEEKDVNGIKFSAYNAGHV-------LGAAMFLIEIAGVKIARYLFLWYQVNVNQN 95 (103)
Q Consensus 37 ~~~~~~~v~y~~~~~i~~~~v~~~~AGHI-------lGsa~~~i~~~~~~i~~~~~~~ysgD~~~~ 95 (103)
...++..+.-++.+++++++++..++-|- -..+.+.++.++.++ +|.||....
T Consensus 58 ~~~~~~vv~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i------~~~Gd~~~~ 117 (163)
T PF13483_consen 58 LDRDIHVVAPGGEYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTI------YHAGDTGFP 117 (163)
T ss_dssp HHTSSEEE-TTEEEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEE------EE-TT--S-
T ss_pred cccccEEEccceEEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEE------EEECCCccC
Confidence 35677788889999999999999999884 447899999999999 999999863
No 24
>PLN02962 hydroxyacylglutathione hydrolase
Probab=94.42 E-value=0.12 Score=38.21 Aligned_cols=45 Identities=7% Similarity=0.107 Sum_probs=30.3
Q ss_pred cCCcEEEeCCEEEEEE-eCCccccceEEEEEEC----CeEEEeeeeeEEEecCCCC
Q psy8351 45 NFHEEKDVNGIKFSAY-NAGHVLGAAMFLIEIA----GVKIARYLFLWYQVNVNQN 95 (103)
Q Consensus 45 ~y~~~~~i~~~~v~~~-~AGHIlGsa~~~i~~~----~~~i~~~~~~~ysgD~~~~ 95 (103)
.=++.+.+++.+++.+ --||.+|+.++.+..+ ..++ +||||.-+.
T Consensus 105 ~~g~~i~~g~~~l~vi~tPGHT~g~v~~~~~d~~~~~~~~~------lftGD~Lf~ 154 (251)
T PLN02962 105 EPGDKIYFGDLYLEVRATPGHTAGCVTYVTGEGPDQPQPRM------AFTGDALLI 154 (251)
T ss_pred CCCCEEEECCEEEEEEECCCCCcCcEEEEeccCCCCCccce------EEECCeecc
Confidence 3456677777655433 3499999999977532 2356 999996554
No 25
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=94.02 E-value=0.14 Score=37.48 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=32.6
Q ss_pred cccCCcEEEeCCEEEEEEe-CCccccceEEEEEECCeEEEeeeeeEEEecCCCCC
Q psy8351 43 TINFHEEKDVNGIKFSAYN-AGHVLGAAMFLIEIAGVKIARYLFLWYQVNVNQNN 96 (103)
Q Consensus 43 ~v~y~~~~~i~~~~v~~~~-AGHIlGsa~~~i~~~~~~i~~~~~~~ysgD~~~~~ 96 (103)
.+.-++.+.+++.+++.+. .||.+|+.++.. + .+ +||||.-+.+
T Consensus 88 ~v~~g~~i~ig~~~~~vi~tPGHT~ghi~~~~--~--~~------lFtGDtlf~~ 132 (251)
T PRK10241 88 VVKDGETAFVLGHEFSVFATPGHTLGHICYFS--K--PY------LFCGDTLFSG 132 (251)
T ss_pred EeCCCCEEEeCCcEEEEEEcCCCCccceeeec--C--Cc------EEEcCeeccC
Confidence 4555677888887887765 899999999853 1 35 9999966554
No 26
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=93.46 E-value=0.16 Score=33.39 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=38.2
Q ss_pred cCCcEEEeCCEEEEEEeCCccccceEEEEEECCeEEEeeeeeEEEecCCCCCcccee
Q psy8351 45 NFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKIARYLFLWYQVNVNQNNQEFRI 101 (103)
Q Consensus 45 ~y~~~~~i~~~~v~~~~AGHIlGsa~~~i~~~~~~i~~~~~~~ysgD~~~~~~~~~~ 101 (103)
...+.....+........+|..|+..+.+...+.++ +||||+...+....+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v------lftGD~~~~~~~~~~ 155 (194)
T PF00753_consen 105 EDEDDLEIGGDRILFIIPGPGHGSDSLIIYLPGGKV------LFTGDLLFSNEHPNP 155 (194)
T ss_dssp ETTTEEEEETTEEEEEEESSSSSTTEEEEEETTTTE------EEEETTSCTTTSSSS
T ss_pred eecccccccccccccceeccccCCcceEEEeCCCcE------EEeeeEeccCCcccc
Confidence 344444555666677777888888888888899999 999999988765543
No 27
>KOG0813|consensus
Probab=92.92 E-value=0.3 Score=36.65 Aligned_cols=48 Identities=15% Similarity=0.282 Sum_probs=39.1
Q ss_pred cccCCcEEEeCCEEEEEEe-CCccccceEEEEE-ECCeEEEeeeeeEEEecCCCCC
Q psy8351 43 TINFHEEKDVNGIKFSAYN-AGHVLGAAMFLIE-IAGVKIARYLFLWYQVNVNQNN 96 (103)
Q Consensus 43 ~v~y~~~~~i~~~~v~~~~-AGHIlGsa~~~i~-~~~~~i~~~~~~~ysgD~~~~~ 96 (103)
.+..++.+.++|++|+... -||.-|+..+++. ..+.+. +||||--+..
T Consensus 95 ~~~~~e~~~~~g~~v~~l~TPgHT~~hi~~~~~~~~~e~~------iFtGDtlf~~ 144 (265)
T KOG0813|consen 95 GLKDGETVTVGGLEVRCLHTPGHTAGHICYYVTESTGERA------IFTGDTLFGA 144 (265)
T ss_pred cCCCCcEEEECCEEEEEEeCCCccCCcEEEEeecCCCCCe------EEeCCceeec
Confidence 4678899999999997665 4999999999998 567778 9999965543
No 28
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=92.75 E-value=0.44 Score=35.05 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=23.7
Q ss_pred EEEeCCEEEEEEeCCccccceEEEEEEC
Q psy8351 49 EKDVNGIKFSAYNAGHVLGAAMFLIEIA 76 (103)
Q Consensus 49 ~~~i~~~~v~~~~AGHIlGsa~~~i~~~ 76 (103)
.+..++++|+++++-|...+..+.|+.+
T Consensus 122 ~~~~~~~~v~~~~~~H~~~~~gy~i~~~ 149 (299)
T TIGR02651 122 VFEDDGFKVEAFPLDHSIPSLGYRFEEK 149 (299)
T ss_pred eEecCCEEEEEEEcCCCCceEEEEEEEC
Confidence 4667899999999999877888888864
No 29
>PRK04286 hypothetical protein; Provisional
Probab=92.53 E-value=0.56 Score=35.21 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=32.4
Q ss_pred ccCCcEEEeCCEEEEEE-eCCcc-----cc-ceEEEEEECCeEEEeeeeeEEEecCC
Q psy8351 44 INFHEEKDVNGIKFSAY-NAGHV-----LG-AAMFLIEIAGVKIARYLFLWYQVNVN 93 (103)
Q Consensus 44 v~y~~~~~i~~~~v~~~-~AGHI-----lG-sa~~~i~~~~~~i~~~~~~~ysgD~~ 93 (103)
+.-++.+.+++++|++. +..|- .| ...+.|+.+++++ +|+||.+
T Consensus 137 ~~~g~~~~ig~~~V~~~~~v~H~~~~~~~Gy~i~~ri~~gg~~~------~~~gDt~ 187 (298)
T PRK04286 137 YADGKTFRFGGTTIEFSPPVPHGADGSKLGYVIMVRISDGDESF------VFASDVQ 187 (298)
T ss_pred ECCCCEEEECCEEEEEeccCCCCCCCCccceEEEEEEEeCCEEE------EEECCCC
Confidence 34467888899999976 77883 22 1234567788899 9999998
No 30
>PRK02113 putative hydrolase; Provisional
Probab=91.96 E-value=0.28 Score=35.38 Aligned_cols=45 Identities=16% Similarity=-0.000 Sum_probs=31.8
Q ss_pred ccccCCcEEEeCCEEEEEEeCCcccc-ceEEEEEECCeEEEeeeeeEEEecCCCCC
Q psy8351 42 ETINFHEEKDVNGIKFSAYNAGHVLG-AAMFLIEIAGVKIARYLFLWYQVNVNQNN 96 (103)
Q Consensus 42 ~~v~y~~~~~i~~~~v~~~~AGHIlG-sa~~~i~~~~~~i~~~~~~~ysgD~~~~~ 96 (103)
+.++.++++++++++|+++++-|-.. +..+.+ +++ +|+||....+
T Consensus 129 ~~~~~g~~~~~~~~~i~~~~~~H~~~~~~gy~i----~~i------~y~~Dt~~~~ 174 (252)
T PRK02113 129 REIEPDRPFLVNHTEVTPLRVMHGKLPILGYRI----GKM------AYITDMLTMP 174 (252)
T ss_pred EEcCCCCCEEECCeEEEEEEecCCCccEEEEEe----CCE------EEccCCCCCC
Confidence 44555677888999999999999532 334444 345 9999987543
No 31
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=90.32 E-value=0.97 Score=33.64 Aligned_cols=29 Identities=31% Similarity=0.173 Sum_probs=23.2
Q ss_pred CcEEEeCCEEEEEEeCCccccceEEEEEE
Q psy8351 47 HEEKDVNGIKFSAYNAGHVLGAAMFLIEI 75 (103)
Q Consensus 47 ~~~~~i~~~~v~~~~AGHIlGsa~~~i~~ 75 (103)
++.++.++++|++++.-|-.-+..+.|+.
T Consensus 122 ~~~~~~~~~~v~~~~~~H~~~~~gy~i~~ 150 (303)
T TIGR02649 122 GEILDDGLRKVTAYPLEHPLECYGYRIEE 150 (303)
T ss_pred CceEecCCeEEEEEEccCccceEEEEEec
Confidence 45555568999999999987788888875
No 32
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=89.45 E-value=1.4 Score=33.27 Aligned_cols=64 Identities=17% Similarity=0.335 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHhh-------------cccccCCcEEEeC-----CEEEEEEeCC--------c------cccceEEE
Q psy8351 25 EQMLYTESDLEKSMDK-------------IETINFHEEKDVN-----GIKFSAYNAG--------H------VLGAAMFL 72 (103)
Q Consensus 25 ~~p~y~~~dv~~~~~~-------------~~~v~y~~~~~i~-----~~~v~~~~AG--------H------IlGsa~~~ 72 (103)
..|.|..+.+.+.+.. +..++.++++.+. +++|++++.- | --.+..+.
T Consensus 104 ~lpVya~~~t~~~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~ 183 (302)
T TIGR02108 104 PFTLYATEMVLQDLSDNPIFNVLDHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLK 183 (302)
T ss_pred CceEEECHHHHHHHHhCCCccccchhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEE
Confidence 4567877777766642 1234555666653 5999999998 4 13577889
Q ss_pred EEEC--CeEEEeeeeeEEEecCCC
Q psy8351 73 IEIA--GVKIARYLFLWYQVNVNQ 94 (103)
Q Consensus 73 i~~~--~~~i~~~~~~~ysgD~~~ 94 (103)
|+.+ ++++ +|++|.+.
T Consensus 184 i~~~~~g~~~------~y~tD~g~ 201 (302)
T TIGR02108 184 IEDGTTGKRL------FYIPGCAE 201 (302)
T ss_pred EEeCCCCcEE------EEECCCCC
Confidence 9887 8888 99999874
No 33
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=87.78 E-value=1.7 Score=32.63 Aligned_cols=42 Identities=19% Similarity=0.346 Sum_probs=31.5
Q ss_pred CcEEEeC---CEEEEEEeCCc-------------cccceEEEEE--ECCeEEEeeeeeEEEecCCC
Q psy8351 47 HEEKDVN---GIKFSAYNAGH-------------VLGAAMFLIE--IAGVKIARYLFLWYQVNVNQ 94 (103)
Q Consensus 47 ~~~~~i~---~~~v~~~~AGH-------------IlGsa~~~i~--~~~~~i~~~~~~~ysgD~~~ 94 (103)
+++++++ |++|++++.-| -..+..+.|+ .+++++ +|++|...
T Consensus 142 ~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~~~------~y~tD~~~ 201 (302)
T PRK05184 142 DGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATGKRL------FYAPGLAE 201 (302)
T ss_pred CCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCCcEE------EEECCCCC
Confidence 4567775 89999999965 2357788885 677788 99977743
No 34
>PRK11539 ComEC family competence protein; Provisional
Probab=85.25 E-value=2.3 Score=36.04 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=37.6
Q ss_pred cccCCcEEEeCCEEEEEE-eCCcc-----ccceEEEEEECCeEEEeeeeeEEEecCCCCCcc
Q psy8351 43 TINFHEEKDVNGIKFSAY-NAGHV-----LGAAMFLIEIAGVKIARYLFLWYQVNVNQNNQE 98 (103)
Q Consensus 43 ~v~y~~~~~i~~~~v~~~-~AGHI-----lGsa~~~i~~~~~~i~~~~~~~ysgD~~~~~~~ 98 (103)
++.-++.++.++++++.. +.+|. .+||-+.++.++.++ ++|||+....++
T Consensus 591 ~~~~g~~~~~~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~~~~~~------LltGDi~~~~E~ 646 (755)
T PRK11539 591 PCVRGEQWQWQGLTFSVHWPLEQSNDAGNNDSCVIRVDDGKHSI------LLTGDLEAQAEQ 646 (755)
T ss_pred cccCCCeEeECCEEEEEEecCcccCCCCCCccEEEEEEECCEEE------EEEeCCChHHHH
Confidence 344566777888888777 44454 458899999999999 999999776554
No 35
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=85.09 E-value=2.3 Score=35.38 Aligned_cols=51 Identities=8% Similarity=0.141 Sum_probs=38.4
Q ss_pred ccccCCcEEEeCCEEEEEEeCCcc------ccceEEEEEECCeEEEeeeeeEEEecCCCCCcc
Q psy8351 42 ETINFHEEKDVNGIKFSAYNAGHV------LGAAMFLIEIAGVKIARYLFLWYQVNVNQNNQE 98 (103)
Q Consensus 42 ~~v~y~~~~~i~~~~v~~~~AGHI------lGsa~~~i~~~~~~i~~~~~~~ysgD~~~~~~~ 98 (103)
..+.-++.++++|++++...-+.. -.|+.+.++.++.++ ++|||+..+.++
T Consensus 533 ~~~~~G~~~~~~~~~~~vL~P~~~~~~~~N~~S~vl~i~~~~~~~------L~tGD~~~~~E~ 589 (662)
T TIGR00361 533 EECKRGDVWQWQGLQFHVLSPEAPDPASKNNHSCVLWVDDGGNSW------LLTGDLEAEGEQ 589 (662)
T ss_pred EecCCCCEEeECCEEEEEECCCCccCCCCCCCceEEEEEECCeeE------EEecCCCHHHHH
Confidence 345566778888999988864431 247888899999999 999999886554
No 36
>KOG3772|consensus
Probab=82.64 E-value=1.2 Score=34.32 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHhhcccccCCcEEEeCCEEE-EEEeCCccccceEEEEE
Q psy8351 27 MLYTESDLEKSMDKIETINFHEEKDVNGIKF-SAYNAGHVLGAAMFLIE 74 (103)
Q Consensus 27 p~y~~~dv~~~~~~~~~v~y~~~~~i~~~~v-~~~~AGHIlGsa~~~i~ 74 (103)
.-.+.+.+..++..-..-.+.+ +.|-|... -=|..|||.||+.+.-.
T Consensus 156 k~Is~etl~~ll~~~~~~~~~~-~~iiDcR~pyEY~GGHIkgavnl~~~ 203 (325)
T KOG3772|consen 156 KYISPETLKGLLQGKFSDFFDK-FIIIDCRYPYEYEGGHIKGAVNLYSK 203 (325)
T ss_pred cccCHHHHHHHHHhccccceee-EEEEEeCCcccccCcccccceecccH
Confidence 4457777777776655555555 66633333 23899999999987544
No 37
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=81.84 E-value=3.4 Score=29.94 Aligned_cols=49 Identities=12% Similarity=0.240 Sum_probs=38.6
Q ss_pred hcccccCCcEEEeCCEEEEEEeCCc-----c--------ccceEEEEEECCeEEEeeeeeEEEecCCC
Q psy8351 40 KIETINFHEEKDVNGIKFSAYNAGH-----V--------LGAAMFLIEIAGVKIARYLFLWYQVNVNQ 94 (103)
Q Consensus 40 ~~~~v~y~~~~~i~~~~v~~~~AGH-----I--------lGsa~~~i~~~~~~i~~~~~~~ysgD~~~ 94 (103)
++...+++..++++++++++.+|=| - -+.+.+.++.++.++ .++||-+.
T Consensus 101 ~~~~~~~~~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~~i------yh~GDt~~ 162 (258)
T COG2220 101 RVHELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGGRV------YHAGDTGY 162 (258)
T ss_pred eEEeecCCceEEecCcEEEEEEeecccccccCCCCccccCCceEEEEEeCCceE------EeccCccH
Confidence 3566778899999998887777766 2 336778899899999 99999875
No 38
>KOG0814|consensus
Probab=80.61 E-value=5.8 Score=28.66 Aligned_cols=41 Identities=15% Similarity=0.370 Sum_probs=29.1
Q ss_pred ccCCcEEEeCCEEEEEE-eCCccccceEEEEEECCeEEEeeeeeEEEecC
Q psy8351 44 INFHEEKDVNGIKFSAY-NAGHVLGAAMFLIEIAGVKIARYLFLWYQVNV 92 (103)
Q Consensus 44 v~y~~~~~i~~~~v~~~-~AGHIlGsa~~~i~~~~~~i~~~~~~~ysgD~ 92 (103)
++-+..++++++.++.. --||..| |+.+++ ++.+. .||||-
T Consensus 100 l~~Gd~i~~G~~~le~ratPGHT~G-C~TyV~-~d~~~------aFTGDa 141 (237)
T KOG0814|consen 100 LEDGDIIEIGGLKLEVRATPGHTNG-CVTYVE-HDLRM------AFTGDA 141 (237)
T ss_pred cCCCCEEEEccEEEEEecCCCCCCc-eEEEEe-cCcce------eeecce
Confidence 45677888988777554 4599998 555565 45556 899984
No 39
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=79.44 E-value=1 Score=27.78 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=11.8
Q ss_pred EEeCCccccceEEEE
Q psy8351 59 AYNAGHVLGAAMFLI 73 (103)
Q Consensus 59 ~~~AGHIlGsa~~~i 73 (103)
-|.+|||+||..+-+
T Consensus 26 e~~~ghIpgA~~ip~ 40 (106)
T cd01519 26 ELKTGKIPGAINIPL 40 (106)
T ss_pred HHhcCcCCCcEEech
Confidence 357899999987754
No 40
>COG4996 Predicted phosphatase [General function prediction only]
Probab=73.24 E-value=2.2 Score=29.41 Aligned_cols=47 Identities=17% Similarity=0.314 Sum_probs=28.4
Q ss_pred CCHHHHHHHHhhcccccCCcEEEeCCEEEEEE-----------eCCccccceEEEEEE
Q psy8351 29 YTESDLEKSMDKIETINFHEEKDVNGIKFSAY-----------NAGHVLGAAMFLIEI 75 (103)
Q Consensus 29 y~~~dv~~~~~~~~~v~y~~~~~i~~~~v~~~-----------~AGHIlGsa~~~i~~ 75 (103)
++.-++-.+..-+..+.-+.-.+-+|..|+++ ++|||+|+++|-++.
T Consensus 12 wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~ 69 (164)
T COG4996 12 WDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFED 69 (164)
T ss_pred cccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchH
Confidence 33333433333334444344444467888876 699999999997664
No 41
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=72.05 E-value=1.4 Score=27.14 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=11.5
Q ss_pred EeCCccccceEEEE
Q psy8351 60 YNAGHVLGAAMFLI 73 (103)
Q Consensus 60 ~~AGHIlGsa~~~i 73 (103)
|.+|||+||..+-.
T Consensus 28 ~~~ghIpgA~~ip~ 41 (105)
T cd01525 28 FRRGHIEGSINIPF 41 (105)
T ss_pred HhCCccCCCEeCCH
Confidence 68899999987754
No 42
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=71.32 E-value=2 Score=28.61 Aligned_cols=12 Identities=42% Similarity=0.839 Sum_probs=9.8
Q ss_pred CCccccceEEEE
Q psy8351 62 AGHVLGAAMFLI 73 (103)
Q Consensus 62 AGHIlGsa~~~i 73 (103)
+||||||..+-+
T Consensus 52 ~GHIPgAv~~~~ 63 (138)
T cd01445 52 SGHIPGASFFDF 63 (138)
T ss_pred CCcCCCCEeeCH
Confidence 499999988754
No 43
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=68.24 E-value=2.7 Score=31.86 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=26.6
Q ss_pred CHHHHHHHHhhcccccCCcEEEeCCEE-EEEEeCCccccceEEEEE
Q psy8351 30 TESDLEKSMDKIETINFHEEKDVNGIK-FSAYNAGHVLGAAMFLIE 74 (103)
Q Consensus 30 ~~~dv~~~~~~~~~v~y~~~~~i~~~~-v~~~~AGHIlGsa~~~i~ 74 (103)
+.+-+.+-+..-..+..+-.+...+.. .+.|..||||||..+-++
T Consensus 14 s~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~ 59 (285)
T COG2897 14 SPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWE 59 (285)
T ss_pred cHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHH
Confidence 444444433322222333444443444 889999999999988766
No 44
>PRK00055 ribonuclease Z; Reviewed
Probab=65.86 E-value=3.9 Score=29.25 Aligned_cols=37 Identities=14% Similarity=0.059 Sum_probs=25.3
Q ss_pred CEEEEEEeCCccccceEEEEEECCeEEEeeeeeEEEecCCCCC
Q psy8351 54 GIKFSAYNAGHVLGAAMFLIEIAGVKIARYLFLWYQVNVNQNN 96 (103)
Q Consensus 54 ~~~v~~~~AGHIlGsa~~~i~~~~~~i~~~~~~~ysgD~~~~~ 96 (103)
+.++++.+..++..+..+.++.+++++ +|+||.+...
T Consensus 143 g~~~~~~~~~~i~~~~~~~~~~~g~~~------~y~~Dt~~~~ 179 (270)
T PRK00055 143 GEDVTLEDGRIINPADVLGPPRKGRKV------AYCGDTRPCE 179 (270)
T ss_pred CCeEEeCCCcEEeHHHeeccCCCCcEE------EEeCCCCCcH
Confidence 344444333335677778888888888 9999987653
No 45
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=65.80 E-value=2.2 Score=26.70 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHhhcccccCCcEEEeCCEEEEEEeCCccccceEEEE
Q psy8351 26 QMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLI 73 (103)
Q Consensus 26 ~p~y~~~dv~~~~~~~~~v~y~~~~~i~~~~v~~~~AGHIlGsa~~~i 73 (103)
.+..+.+++.+.++.-.. -.-+++- .-.-|.+||||||..+-+
T Consensus 9 ~~~i~~~~l~~~~~~~~~---~~liDvR--~~~e~~~ghIpgainip~ 51 (109)
T cd01533 9 TPSVSADELAALQARGAP---LVVLDGR--RFDEYRKMTIPGSVSCPG 51 (109)
T ss_pred CCcCCHHHHHHHHhcCCC---cEEEeCC--CHHHHhcCcCCCceeCCH
Confidence 355677888777643110 0122221 112256799999987644
No 46
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=65.23 E-value=2.7 Score=24.75 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=11.7
Q ss_pred EEeCCccccceEEEE
Q psy8351 59 AYNAGHVLGAAMFLI 73 (103)
Q Consensus 59 ~~~AGHIlGsa~~~i 73 (103)
-|..|||+||..+-+
T Consensus 15 e~~~~hi~ga~~i~~ 29 (100)
T smart00450 15 EYEGGHIPGAVNIPL 29 (100)
T ss_pred HhccCCCCCceeCCH
Confidence 366799999987754
No 47
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=65.20 E-value=2.4 Score=25.61 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=11.5
Q ss_pred EEeCCccccceEEEE
Q psy8351 59 AYNAGHVLGAAMFLI 73 (103)
Q Consensus 59 ~~~AGHIlGsa~~~i 73 (103)
-|.+||||||..+-.
T Consensus 24 ~~~~~hipgA~~ip~ 38 (90)
T cd01524 24 EFEKGHIKGAINIPL 38 (90)
T ss_pred HHhcCCCCCCEeCCH
Confidence 367899999877654
No 48
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=64.62 E-value=2 Score=26.17 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=10.6
Q ss_pred EeCCccccceEEE
Q psy8351 60 YNAGHVLGAAMFL 72 (103)
Q Consensus 60 ~~AGHIlGsa~~~ 72 (103)
|..|||+||..+-
T Consensus 28 ~~~ghipga~~ip 40 (95)
T cd01534 28 YEAGHLPGFRHTP 40 (95)
T ss_pred HHhCCCCCcEeCC
Confidence 5779999998774
No 49
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=64.25 E-value=15 Score=29.18 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=35.1
Q ss_pred cccccCCcEEEeCCEEEEEEeC--CccccceEEEEEECCeEEEeeeeeEEEecCCC
Q psy8351 41 IETINFHEEKDVNGIKFSAYNA--GHVLGAAMFLIEIAGVKIARYLFLWYQVNVNQ 94 (103)
Q Consensus 41 ~~~v~y~~~~~i~~~~v~~~~A--GHIlGsa~~~i~~~~~~i~~~~~~~ysgD~~~ 94 (103)
++.+.-++.++++|-+++|.+| =|=||+...+. ...+| +||+|+..
T Consensus 121 ~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd~m~TYd--~~~kI------LFS~D~fG 168 (388)
T COG0426 121 FKIVKTGDTLDLGGHTLKFIPAPFLHWPDTMFTYD--PEDKI------LFSCDAFG 168 (388)
T ss_pred eeecCCCCEeccCCcEEEEEeCCCCCCCCceeEee--cCCcE------EEcccccc
Confidence 4566677888889999999988 58888876643 34567 99999753
No 50
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=62.80 E-value=5.2 Score=33.26 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=12.6
Q ss_pred EEEeCCccccceEEEE
Q psy8351 58 SAYNAGHVLGAAMFLI 73 (103)
Q Consensus 58 ~~~~AGHIlGsa~~~i 73 (103)
..+.+||||||..+-.
T Consensus 180 ~~~r~GHIPGAvnip~ 195 (610)
T PRK09629 180 VAAKGGHIPGAVNFEW 195 (610)
T ss_pred ccccCCCCCCCeecCH
Confidence 4567999999988753
No 51
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=62.79 E-value=7 Score=29.69 Aligned_cols=57 Identities=7% Similarity=0.180 Sum_probs=41.2
Q ss_pred HHhhcccccCCcEEEeCCEEEEEEe-CCc-----cccceEEEEEECCeEEEeeeeeEEEecCCCCCccc
Q psy8351 37 SMDKIETINFHEEKDVNGIKFSAYN-AGH-----VLGAAMFLIEIAGVKIARYLFLWYQVNVNQNNQEF 99 (103)
Q Consensus 37 ~~~~~~~v~y~~~~~i~~~~v~~~~-AGH-----IlGsa~~~i~~~~~~i~~~~~~~ysgD~~~~~~~~ 99 (103)
.......+.-++.+.++++.+++.. .+. --=||.+.+++++.++ ++|||+...++..
T Consensus 136 ~~~~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~s~------LlTGD~e~~~E~~ 198 (293)
T COG2333 136 AGIPVRSCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNSF------LLTGDLEEKGEKL 198 (293)
T ss_pred cCCceeccccCceEEECCeEEEEEcCCccccccccCcceEEEEEeCCeeE------EEecCCCchhHHH
Confidence 3334455666777888888887653 333 2238899999999999 9999998877643
No 52
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=62.20 E-value=5.8 Score=25.10 Aligned_cols=16 Identities=38% Similarity=0.725 Sum_probs=12.3
Q ss_pred EEEeCCccccceEEEE
Q psy8351 58 SAYNAGHVLGAAMFLI 73 (103)
Q Consensus 58 ~~~~AGHIlGsa~~~i 73 (103)
..|.+|||+||..+-+
T Consensus 32 ~~~~~ghI~ga~~i~~ 47 (122)
T cd01448 32 KEYLEGHIPGAVFFDL 47 (122)
T ss_pred hHHhhCCCCCCEEcCh
Confidence 3467899999987764
No 53
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=61.75 E-value=3 Score=27.00 Aligned_cols=15 Identities=40% Similarity=0.709 Sum_probs=12.4
Q ss_pred EEeCCccccceEEEE
Q psy8351 59 AYNAGHVLGAAMFLI 73 (103)
Q Consensus 59 ~~~AGHIlGsa~~~i 73 (103)
-|.+|||+||..+-.
T Consensus 34 e~~~ghI~gA~~ip~ 48 (121)
T cd01530 34 EYNGGHIKGAVNLST 48 (121)
T ss_pred HHhCCcCCCCEeCCc
Confidence 467799999998866
No 54
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=60.88 E-value=3 Score=26.22 Aligned_cols=15 Identities=47% Similarity=0.589 Sum_probs=11.3
Q ss_pred EEeCCccccceEEEE
Q psy8351 59 AYNAGHVLGAAMFLI 73 (103)
Q Consensus 59 ~~~AGHIlGsa~~~i 73 (103)
-|..||||||..+-.
T Consensus 36 e~~~ghIpgA~~ip~ 50 (110)
T cd01521 36 AYARGHVPGAINLPH 50 (110)
T ss_pred HHhcCCCCCCEeCCH
Confidence 356899999986644
No 55
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=59.73 E-value=4 Score=26.48 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=11.1
Q ss_pred EeCCccccceEEEE
Q psy8351 60 YNAGHVLGAAMFLI 73 (103)
Q Consensus 60 ~~AGHIlGsa~~~i 73 (103)
|..||||||..+-+
T Consensus 25 ~~~ghIpgAinip~ 38 (128)
T cd01520 25 FFEGHLPGAINLPL 38 (128)
T ss_pred hccCcCCCcEEccC
Confidence 46699999987655
No 56
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=59.57 E-value=3.7 Score=24.98 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=11.0
Q ss_pred EEeCCccccceEEE
Q psy8351 59 AYNAGHVLGAAMFL 72 (103)
Q Consensus 59 ~~~AGHIlGsa~~~ 72 (103)
-|..|||+||..+-
T Consensus 23 ~~~~~hIpgA~~ip 36 (96)
T cd01529 23 EYAAGHLPGKRSIP 36 (96)
T ss_pred HHcCCCCCCcEeCC
Confidence 36789999998763
No 57
>PRK02126 ribonuclease Z; Provisional
Probab=59.47 E-value=41 Score=25.77 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=19.7
Q ss_pred EEeCCEEEEEEeCCccccceEEEEEE
Q psy8351 50 KDVNGIKFSAYNAGHVLGAAMFLIEI 75 (103)
Q Consensus 50 ~~i~~~~v~~~~AGHIlGsa~~~i~~ 75 (103)
++.++++|++++.-|-.-|..+.|+.
T Consensus 148 ~~~~~~~V~a~~~~H~vp~~gy~~~e 173 (334)
T PRK02126 148 LDEPWFRVRAAFLDHGIPCLAFALEE 173 (334)
T ss_pred EeCCCEEEEEEEccCCCceeEEEEEe
Confidence 34479999999999955566777763
No 58
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=59.11 E-value=3.1 Score=30.78 Aligned_cols=14 Identities=50% Similarity=0.895 Sum_probs=11.4
Q ss_pred EEeCCccccceEEE
Q psy8351 59 AYNAGHVLGAAMFL 72 (103)
Q Consensus 59 ~~~AGHIlGsa~~~ 72 (103)
-|.+||||||..+-
T Consensus 41 ~y~~GHIpGA~~~~ 54 (281)
T PRK11493 41 EYRAGHIPGAVFFD 54 (281)
T ss_pred HHHhCcCCCCEEcC
Confidence 36799999998764
No 59
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=59.07 E-value=3.5 Score=25.87 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=10.1
Q ss_pred eCCccccceEEEE
Q psy8351 61 NAGHVLGAAMFLI 73 (103)
Q Consensus 61 ~AGHIlGsa~~~i 73 (103)
.+|||+||..+-+
T Consensus 38 ~~ghIpgA~~~p~ 50 (118)
T cd01449 38 RSGHIPGAVNIPW 50 (118)
T ss_pred cCCcCCCCcccCh
Confidence 4599999987754
No 60
>KOG1387|consensus
Probab=56.11 E-value=4.4 Score=32.19 Aligned_cols=18 Identities=11% Similarity=0.218 Sum_probs=13.6
Q ss_pred eeeeEEEecCCCCCccce
Q psy8351 83 YLFLWYQVNVNQNNQEFR 100 (103)
Q Consensus 83 ~~~~~ysgD~~~~~~~~~ 100 (103)
.+.|+||||++.++..++
T Consensus 77 ~~~viYsGD~n~t~~~IL 94 (465)
T KOG1387|consen 77 NVIVIYSGDFNVTPENIL 94 (465)
T ss_pred ceEEEEeCCCCCCHHHHH
Confidence 345699999998877654
No 61
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=55.13 E-value=3.8 Score=24.91 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=11.2
Q ss_pred EEeCCccccceEEEE
Q psy8351 59 AYNAGHVLGAAMFLI 73 (103)
Q Consensus 59 ~~~AGHIlGsa~~~i 73 (103)
-|..|||+||..+-.
T Consensus 21 e~~~~hi~ga~~ip~ 35 (92)
T cd01532 21 PFAQSHPLWAANLPL 35 (92)
T ss_pred HHhhCCcccCeeCCH
Confidence 367899999876543
No 62
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=54.96 E-value=3.7 Score=25.24 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=11.7
Q ss_pred EeCCccccceEEEEE
Q psy8351 60 YNAGHVLGAAMFLIE 74 (103)
Q Consensus 60 ~~AGHIlGsa~~~i~ 74 (103)
|..|||+||..+-+.
T Consensus 29 ~~~ghi~gA~~ip~~ 43 (101)
T cd01518 29 YDIGHFKGAVNPDVD 43 (101)
T ss_pred hhcCEeccccCCCcc
Confidence 578999999877543
No 63
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=54.66 E-value=5.8 Score=24.93 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=12.1
Q ss_pred EeCCccccceEEEEE
Q psy8351 60 YNAGHVLGAAMFLIE 74 (103)
Q Consensus 60 ~~AGHIlGsa~~~i~ 74 (103)
|..|||+||..+-+.
T Consensus 30 ~~~~hi~gA~~ip~~ 44 (113)
T cd01531 30 YAGGHIKGSWHYPST 44 (113)
T ss_pred cCCCcCCCCEecCHH
Confidence 578999999887653
No 64
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=54.29 E-value=37 Score=26.33 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=28.7
Q ss_pred CEEEEEEeCCcccc------ceEEEEEEC--CeEEEeeeeeEEEecCCCCC
Q psy8351 54 GIKFSAYNAGHVLG------AAMFLIEIA--GVKIARYLFLWYQVNVNQNN 96 (103)
Q Consensus 54 ~~~v~~~~AGHIlG------sa~~~i~~~--~~~i~~~~~~~ysgD~~~~~ 96 (103)
+..++.++--|--+ |+++.|+.+ +..+ +|.||+....
T Consensus 176 ~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~i------l~fGD~e~Ds 220 (335)
T PF02112_consen 176 SSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEI------LFFGDTEPDS 220 (335)
T ss_pred cccceeeecCCCCcccCCCcceEEEEEeCCCCCEE------EEEeCCCCCc
Confidence 35667799888544 789999986 4889 9999998753
No 65
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=52.74 E-value=7.1 Score=23.65 Aligned_cols=13 Identities=23% Similarity=0.133 Sum_probs=10.3
Q ss_pred EeCCccccceEEE
Q psy8351 60 YNAGHVLGAAMFL 72 (103)
Q Consensus 60 ~~AGHIlGsa~~~ 72 (103)
+.+|||+||..+-
T Consensus 27 ~~~ghIpga~~ip 39 (103)
T cd01447 27 ERTGMIPGAFHAP 39 (103)
T ss_pred HhcCCCCCcEEcc
Confidence 3689999998763
No 66
>PLN02720 complex II
Probab=52.50 E-value=20 Score=24.38 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=21.9
Q ss_pred HHHHHHhhhhcCCCCCCCCHHHHHHHHh
Q psy8351 12 LLSDYIKVSNISTEQMLYTESDLEKSMD 39 (103)
Q Consensus 12 lL~D~~ki~~~~~~~p~y~~~dv~~~~~ 39 (103)
.|..+.++...+...|++++.||++.+.
T Consensus 23 ~l~~y~~~~~rdkPLP~Ws~sDVeeFIa 50 (140)
T PLN02720 23 FLENYARFSKRDKPLPPWSDSDVDEFIA 50 (140)
T ss_pred HHHHHHHhhcCCCCCCCCchhhHHHHHh
Confidence 3555777777667789999999998874
No 67
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=52.45 E-value=7.2 Score=26.69 Aligned_cols=13 Identities=8% Similarity=-0.033 Sum_probs=10.0
Q ss_pred EeCCccccceEEE
Q psy8351 60 YNAGHVLGAAMFL 72 (103)
Q Consensus 60 ~~AGHIlGsa~~~ 72 (103)
.+.||||||..+-
T Consensus 76 ~~~~HIPGAv~ip 88 (162)
T TIGR03865 76 EPRLNIPGSLWLP 88 (162)
T ss_pred ccCCCCCCcEEec
Confidence 4558999998764
No 68
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=52.03 E-value=5.7 Score=25.41 Aligned_cols=41 Identities=5% Similarity=-0.053 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHhhcccccCCcEEEeCCEEEEEEeCCccccceEEEE
Q psy8351 28 LYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLI 73 (103)
Q Consensus 28 ~y~~~dv~~~~~~~~~v~y~~~~~i~~~~v~~~~AGHIlGsa~~~i 73 (103)
.-+.+++.+.+++-. ..+-+|=-.-.-|..|||+||..+-+
T Consensus 9 ~is~~el~~~~~~~~-----~~~ivDvR~~~e~~~~hIpgai~ip~ 49 (122)
T cd01526 9 RVSVKDYKNILQAGK-----KHVLLDVRPKVHFEICRLPEAINIPL 49 (122)
T ss_pred ccCHHHHHHHHhCCC-----CeEEEEcCCHHHhhcccCCCCeEccH
Confidence 345666666654311 11122222233466899999987654
No 69
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=51.89 E-value=5.1 Score=23.27 Aligned_cols=15 Identities=40% Similarity=0.689 Sum_probs=11.8
Q ss_pred EeCCccccceEEEEE
Q psy8351 60 YNAGHVLGAAMFLIE 74 (103)
Q Consensus 60 ~~AGHIlGsa~~~i~ 74 (103)
|..|||+||..+-+.
T Consensus 22 ~~~~~i~ga~~~~~~ 36 (89)
T cd00158 22 YAAGHIPGAINIPLS 36 (89)
T ss_pred HhccccCCCEecchH
Confidence 566999999877554
No 70
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=51.82 E-value=5 Score=30.43 Aligned_cols=13 Identities=38% Similarity=0.726 Sum_probs=10.9
Q ss_pred EeCCccccceEEE
Q psy8351 60 YNAGHVLGAAMFL 72 (103)
Q Consensus 60 ~~AGHIlGsa~~~ 72 (103)
|..||||||..+-
T Consensus 58 y~~gHIPgAi~i~ 70 (320)
T PLN02723 58 YQVAHIPGALFFD 70 (320)
T ss_pred HHhccCCCCeecC
Confidence 6789999998764
No 71
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=51.37 E-value=4 Score=24.88 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=11.2
Q ss_pred EeCCccccceEEEE
Q psy8351 60 YNAGHVLGAAMFLI 73 (103)
Q Consensus 60 ~~AGHIlGsa~~~i 73 (103)
|..|||+||..+-+
T Consensus 25 ~~~~hI~ga~~i~~ 38 (113)
T PF00581_consen 25 YERGHIPGAVNIPF 38 (113)
T ss_dssp HHHSBETTEEEEEG
T ss_pred HHcCCCCCCccccc
Confidence 57799999976655
No 72
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=48.71 E-value=5.7 Score=26.67 Aligned_cols=12 Identities=33% Similarity=0.432 Sum_probs=10.0
Q ss_pred EeCCccccceEE
Q psy8351 60 YNAGHVLGAAMF 71 (103)
Q Consensus 60 ~~AGHIlGsa~~ 71 (103)
|.+||||||..+
T Consensus 23 ~~~gHIpgAi~~ 34 (145)
T cd01535 23 YVKRHIPGAWWV 34 (145)
T ss_pred HHcCCCCCceeC
Confidence 678999998765
No 73
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3.1.26 from EC cleaves RNA from DNA-RNA hybrids. It catalyses endonucleolytic cleavage to 5'-phospho-monoesters. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other []. The only RNase H homologue in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This entry represents the uncharacterised N-terminal domain of bacterial RNase HIII.; PDB: 3ASM_A 2D0C_A 2D0B_A 2D0A_A.
Probab=48.37 E-value=51 Score=20.21 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=23.2
Q ss_pred CHHHHHHHHhhccc-----ccCCcEEEe--CCEEEEEEeCCccc
Q psy8351 30 TESDLEKSMDKIET-----INFHEEKDV--NGIKFSAYNAGHVL 66 (103)
Q Consensus 30 ~~~dv~~~~~~~~~-----v~y~~~~~i--~~~~v~~~~AGHIl 66 (103)
+.++++++...+.. .|-+-.|.. +|.+|+.|.+|=++
T Consensus 8 ~~~~i~~l~~~y~~~~~~~~~p~~~f~aK~~~~tIt~Y~SGKV~ 51 (81)
T PF11858_consen 8 TSEQIEKLKKYYKPYLTSSKPPYAVFQAKYNGVTITAYKSGKVV 51 (81)
T ss_dssp -HHHHHHHHHHSTT-B-SS--TTEEEEEEETTEEEEEETTSEEE
T ss_pred CHHHHHHHHHHHHHhcccCCCCCEEEEEeCCCeEEEEEeCCeEE
Confidence 56677777766632 333444443 79999999999654
No 74
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=47.30 E-value=6.8 Score=25.34 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=12.7
Q ss_pred EeCCccccceEEEEE
Q psy8351 60 YNAGHVLGAAMFLIE 74 (103)
Q Consensus 60 ~~AGHIlGsa~~~i~ 74 (103)
|.+|||+||..+-+.
T Consensus 29 ~~~~hI~~ai~i~~~ 43 (132)
T cd01446 29 YSSSHIRGAVNVCCP 43 (132)
T ss_pred HhhCcccCcEecChH
Confidence 678999999988765
No 75
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=46.43 E-value=6.1 Score=24.02 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=10.7
Q ss_pred EeCCccccceEEEE
Q psy8351 60 YNAGHVLGAAMFLI 73 (103)
Q Consensus 60 ~~AGHIlGsa~~~i 73 (103)
|..|||+||-.+-.
T Consensus 28 ~~~~hi~ga~~ip~ 41 (99)
T cd01527 28 YLRERIPGARLVPL 41 (99)
T ss_pred HHhCcCCCCEECCh
Confidence 45699999887644
No 76
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=46.00 E-value=5.6 Score=24.30 Aligned_cols=14 Identities=14% Similarity=0.067 Sum_probs=10.8
Q ss_pred EeCCccccceEEEE
Q psy8351 60 YNAGHVLGAAMFLI 73 (103)
Q Consensus 60 ~~AGHIlGsa~~~i 73 (103)
|.+|||+||..+-+
T Consensus 27 ~~~ghi~ga~~ip~ 40 (100)
T cd01523 27 YERWKIDGENNTPY 40 (100)
T ss_pred HhhcccCCCccccc
Confidence 56799999977643
No 77
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=45.40 E-value=7.5 Score=24.15 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHhhcccccCCcEEEeCCEEEEEEeCCccccceEEE
Q psy8351 27 MLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFL 72 (103)
Q Consensus 27 p~y~~~dv~~~~~~~~~v~y~~~~~i~~~~v~~~~AGHIlGsa~~~ 72 (103)
+..+.+++.+.++.-. -..+++. .-.-|..|||+||..+-
T Consensus 5 ~~is~~el~~~l~~~~----~~ivDvR--~~~e~~~ghi~gA~~ip 44 (108)
T PRK00162 5 ECINVEQAHQKLQEGG----AVLVDIR--DPQSFAMGHAPGAFHLT 44 (108)
T ss_pred cccCHHHHHHHHHcCC----CEEEEcC--CHHHHhcCCCCCCeECC
Confidence 4456777776663211 0122331 11124679999997764
No 78
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=45.28 E-value=7.3 Score=24.60 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=10.4
Q ss_pred EeCCccccceEEEE
Q psy8351 60 YNAGHVLGAAMFLI 73 (103)
Q Consensus 60 ~~AGHIlGsa~~~i 73 (103)
|..|||+||..+-.
T Consensus 30 f~~ghIpgAinip~ 43 (101)
T TIGR02981 30 YQQEHIQGAINIPL 43 (101)
T ss_pred HhcCCCCCCEECCH
Confidence 34699999977644
No 79
>PRK14051 negative regulator GrlR; Provisional
Probab=45.25 E-value=45 Score=22.02 Aligned_cols=37 Identities=8% Similarity=0.131 Sum_probs=28.1
Q ss_pred EEEEEEeCCccccceEEEEEE-----CCeEEEeeeeeEEEecCCCCCc
Q psy8351 55 IKFSAYNAGHVLGAAMFLIEI-----AGVKIARYLFLWYQVNVNQNNQ 97 (103)
Q Consensus 55 ~~v~~~~AGHIlGsa~~~i~~-----~~~~i~~~~~~~ysgD~~~~~~ 97 (103)
+.|.|.+++|--|.-.+.+.- ++..- +|+||++-+..
T Consensus 8 y~v~F~sn~~~fGeGivi~n~nkInGGD~~~------~YqG~isEd~~ 49 (123)
T PRK14051 8 YSIIFISNEDSCGEGILIKNGNMITGGDIAS------VYQGVLSEDED 49 (123)
T ss_pred EEEEEeeCCCCcCccEEEEcCCEecCCccce------EEeccccccce
Confidence 689999999999988877662 23344 89999987643
No 80
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=44.61 E-value=10 Score=23.81 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=22.0
Q ss_pred CCHHHHHHHHhhcccccCCcE---EEeCCEEEEEEeCCccccceEEEE
Q psy8351 29 YTESDLEKSMDKIETINFHEE---KDVNGIKFSAYNAGHVLGAAMFLI 73 (103)
Q Consensus 29 y~~~dv~~~~~~~~~v~y~~~---~~i~~~~v~~~~AGHIlGsa~~~i 73 (103)
.+.+++.+.+..= ..+.++. +++-+- -|..|||+||..+-+
T Consensus 4 is~~el~~~l~~~-~~~~~~~~~iiDvR~~---ef~~ghipgAi~ip~ 47 (113)
T cd01443 4 ISPEELVALLENS-DSNAGKDFVVVDLRRD---DYEGGHIKGSINLPA 47 (113)
T ss_pred cCHHHHHHHHhCC-ccccCCcEEEEECCch---hcCCCcccCceecch
Confidence 4567777766541 1112122 223221 356799999987644
No 81
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=44.52 E-value=8.7 Score=24.49 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=11.8
Q ss_pred Ee-CCccccceEEEEE
Q psy8351 60 YN-AGHVLGAAMFLIE 74 (103)
Q Consensus 60 ~~-AGHIlGsa~~~i~ 74 (103)
|. +||||||..+-..
T Consensus 27 ~~~~ghIpgA~~ip~~ 42 (117)
T cd01522 27 WKFVGGVPDAVHVAWQ 42 (117)
T ss_pred HhcccCCCCceecchh
Confidence 45 8999999877653
No 82
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=42.35 E-value=8.4 Score=23.56 Aligned_cols=13 Identities=8% Similarity=0.041 Sum_probs=10.4
Q ss_pred EeCCccccceEEE
Q psy8351 60 YNAGHVLGAAMFL 72 (103)
Q Consensus 60 ~~AGHIlGsa~~~ 72 (103)
|..|||+||..+-
T Consensus 29 ~~~~hI~ga~~ip 41 (101)
T cd01528 29 LEIAFLPGFLHLP 41 (101)
T ss_pred HhcCcCCCCEecC
Confidence 5679999998664
No 83
>KOG2121|consensus
Probab=38.74 E-value=31 Score=29.59 Aligned_cols=37 Identities=16% Similarity=0.008 Sum_probs=31.8
Q ss_pred CCEEEEEEeCCccccceEEEEEEC-CeEEEeeeeeEEEecCCCC
Q psy8351 53 NGIKFSAYNAGHVLGAAMFLIEIA-GVKIARYLFLWYQVNVNQN 95 (103)
Q Consensus 53 ~~~~v~~~~AGHIlGsa~~~i~~~-~~~i~~~~~~~ysgD~~~~ 95 (103)
+...+.-.++=|++=|....|... +.++ +||||-.-.
T Consensus 594 ~l~~i~tc~viHCp~syg~~i~~~~~~Ki------~YSGDTrP~ 631 (746)
T KOG2121|consen 594 GLESIQTCPVIHCPQSYGCSITHGSGWKI------VYSGDTRPC 631 (746)
T ss_pred CceeEEecCcEecChhhceeEecccceEE------EEcCCCCCc
Confidence 568899999999999999999975 4788 999997653
No 84
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=37.56 E-value=59 Score=19.13 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=18.2
Q ss_pred cceEEEEEECCeEEEeeeeeEEEecCCCCCccce
Q psy8351 67 GAAMFLIEIAGVKIARYLFLWYQVNVNQNNQEFR 100 (103)
Q Consensus 67 Gsa~~~i~~~~~~i~~~~~~~ysgD~~~~~~~~~ 100 (103)
|.|++.|...+.+. +|+|-+....+...
T Consensus 7 ~~sWv~V~d~dG~~------~~~~~l~~G~~~~~ 34 (77)
T PF13464_consen 7 GDSWVEVTDADGKV------LFSGTLKAGETKTF 34 (77)
T ss_pred CCeEEEEEeCCCcE------eeeeeeCCCcEEEE
Confidence 67888888544455 67777666555444
No 85
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=36.73 E-value=61 Score=22.12 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHhhcccc------------cCCcEEEeCC--EEEEEEeCCccccceEEEEEECCeEEEeeeeeEEE
Q psy8351 26 QMLYTESDLEKSMDKIETI------------NFHEEKDVNG--IKFSAYNAGHVLGAAMFLIEIAGVKIARYLFLWYQ 89 (103)
Q Consensus 26 ~p~y~~~dv~~~~~~~~~v------------~y~~~~~i~~--~~v~~~~AGHIlGsa~~~i~~~~~~i~~~~~~~ys 89 (103)
.|+|+..|....+.-+..+ .|+...++.. +++-.+...+-+|=....-|..|+.+.+.+. -|+
T Consensus 53 LPMFg~tD~~~Vl~Ei~~CrkayP~~yIRl~gFDn~rq~Q~~~~sFiV~rP~~ep~f~l~r~e~~~r~~~y~~~-sya 129 (138)
T CHL00130 53 LPLFDVKDPAAVMFEINECRKQKPNGYIKVNAFDASRGVESCVLSFIVNRPANEPGFYLERTEGEGRFIRYTIH-SYA 129 (138)
T ss_pred CccCCCCCHHHHHHHHHHHHHHCCCcEEEEEEeeCCCcEEEeEEEEEEeCCCCCCCcEEEEeecCCceEEEEEe-eee
Confidence 5899988888877554433 3444444445 7777888899999888888888888844443 344
No 86
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=35.62 E-value=14 Score=21.99 Aligned_cols=11 Identities=27% Similarity=0.277 Sum_probs=9.3
Q ss_pred CccccceEEEE
Q psy8351 63 GHVLGAAMFLI 73 (103)
Q Consensus 63 GHIlGsa~~~i 73 (103)
|||+||..+-+
T Consensus 33 ~hi~ga~~ip~ 43 (96)
T cd01444 33 DHIPGAIHLDE 43 (96)
T ss_pred CCCCCCeeCCH
Confidence 99999988744
No 87
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=35.49 E-value=13 Score=23.67 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=10.8
Q ss_pred EEeCCccccceEEEE
Q psy8351 59 AYNAGHVLGAAMFLI 73 (103)
Q Consensus 59 ~~~AGHIlGsa~~~i 73 (103)
-|..|||+||..+-+
T Consensus 31 ef~~ghIpGAiniP~ 45 (104)
T PRK10287 31 QYQQEHVQGAINIPL 45 (104)
T ss_pred HHhcCCCCccEECCH
Confidence 345699999987643
No 88
>PF09923 DUF2155: Uncharacterized protein conserved in bacteria (DUF2155); InterPro: IPR019225 This entry contains various hypothetical prokaryotic proteins that have no known function.
Probab=35.37 E-value=89 Score=19.58 Aligned_cols=35 Identities=9% Similarity=0.064 Sum_probs=27.3
Q ss_pred cccCCcEEEeCCEEEEE------EeCCccccceEEEEEECC
Q psy8351 43 TINFHEEKDVNGIKFSA------YNAGHVLGAAMFLIEIAG 77 (103)
Q Consensus 43 ~v~y~~~~~i~~~~v~~------~~AGHIlGsa~~~i~~~~ 77 (103)
.++-++++++++++|+. ++.+--.++|.++|+..+
T Consensus 17 ~v~~G~~~~~g~L~i~~~~C~~r~p~~~p~~~Af~~v~~~~ 57 (90)
T PF09923_consen 17 EVPVGETVQFGNLTITLRACVSRPPTENPDTDAFVQVTIRE 57 (90)
T ss_pred EEcCCCEEEEccEEEEhhheecCCCCCCcCccceEEEEEcC
Confidence 66789999999888765 455667788999998754
No 89
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=34.99 E-value=1.4e+02 Score=22.82 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHhhcccccCCcEE---------EeCCEEEEEEeCCccccc
Q psy8351 28 LYTESDLEKSMDKIETINFHEEK---------DVNGIKFSAYNAGHVLGA 68 (103)
Q Consensus 28 ~y~~~dv~~~~~~~~~v~y~~~~---------~i~~~~v~~~~AGHIlGs 68 (103)
+++..++-+.++++...+..+.. +...-++++.+|||.|+.
T Consensus 209 ~~~p~~~l~~~n~~~~~~~~~~~f~T~~~~~~d~~~~~l~y~~aGH~p~~ 258 (367)
T COG2208 209 PLDPADVLETLNRVLKQNLEEDMFVTLFLGVYDLDSGELTYSNAGHEPAL 258 (367)
T ss_pred cCCHHHHHHHHHHHHHhcccCCcEEEEEEEEEeccCCEEEEeeCCCCCee
Confidence 57888888877776655554321 124789999999999974
No 90
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=33.38 E-value=41 Score=24.30 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=24.6
Q ss_pred CCEEEEEEeCCccccceEEEEEECCeEEEeeeeeEEEecC
Q psy8351 53 NGIKFSAYNAGHVLGAAMFLIEIAGVKIARYLFLWYQVNV 92 (103)
Q Consensus 53 ~~~~v~~~~AGHIlGsa~~~i~~~~~~i~~~~~~~ysgD~ 92 (103)
+|++|--.+--|.+|....+++- ++ ++|||.
T Consensus 107 ~g~~vi~l~G~ktpGE~ALlled---~v------Li~GDl 137 (199)
T PF14597_consen 107 PGLWVIHLPGSKTPGELALLLED---RV------LITGDL 137 (199)
T ss_dssp TTEEEEEE-SSSSTTEEEEEETT---TE------EEESSS
T ss_pred CceEEEEcCCCCCCceeEEEecc---ce------EEecce
Confidence 57888888777999999888773 36 899995
No 91
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=33.05 E-value=1.4e+02 Score=22.85 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=31.4
Q ss_pred CcEEEeCCEEEEEEeC------Cccccc-eEEEEEECCeEEEeeeeeEEEecCC
Q psy8351 47 HEEKDVNGIKFSAYNA------GHVLGA-AMFLIEIAGVKIARYLFLWYQVNVN 93 (103)
Q Consensus 47 ~~~~~i~~~~v~~~~A------GHIlGs-a~~~i~~~~~~i~~~~~~~ysgD~~ 93 (103)
+++|++++..+.|-++ |-=||= .++.|+.++.++ +|+.|.-
T Consensus 139 gk~f~fG~t~IefS~pvpHG~eGskLGyVl~v~V~dg~~~i------~faSDvq 186 (304)
T COG2248 139 GKTFEFGGTVIEFSPPVPHGREGSKLGYVLMVAVTDGKSSI------VFASDVQ 186 (304)
T ss_pred CceEEeCCEEEEecCCCCCCCcccccceEEEEEEecCCeEE------EEccccc
Confidence 6788888888888653 455664 467777788899 9999986
No 92
>KOG1484|consensus
Probab=31.37 E-value=1.4e+02 Score=23.53 Aligned_cols=63 Identities=19% Similarity=0.189 Sum_probs=46.0
Q ss_pred HHHHHHHHhhhhcCCCCCCCCHHHHHHHHhhcccccCCcEEEeCCEEEEEEeCCccccceEEEEEEC
Q psy8351 10 RWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIA 76 (103)
Q Consensus 10 ~~lL~D~~ki~~~~~~~p~y~~~dv~~~~~~~~~v~y~~~~~i~~~~v~~~~AGHIlGsa~~~i~~~ 76 (103)
-.|++++.++--+ ..||=-+.++++|++++...+ ...++.+-.+=-..+||.-|+.-+.+..+
T Consensus 256 ~PL~k~s~~iLLq--~tPp~~~~~l~~cl~~Is~~~--gV~~v~~~hFWt~~~g~~vGtlhl~V~~d 318 (354)
T KOG1484|consen 256 LPLLKYSGKILLQ--RTPPHLENSLKQCLRQISTLD--GVTSVQNPHFWTLESGSVVGTLHLQVSSD 318 (354)
T ss_pred HHHHHHHHHHHHh--cCChhhhhHHHHHHHHhhccc--cceeeccCceeeccCCceEEEEEEEEecC
Confidence 3466777765432 356667888999999887743 55666667777788999999999888854
No 93
>KOG0057|consensus
Probab=31.07 E-value=68 Score=26.88 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=42.4
Q ss_pred cccCCcEEEeCCEEEEEEeCCccccceEEEEEECCeEEEeeeeeEEEecCCCCCccce
Q psy8351 43 TINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKIARYLFLWYQVNVNQNNQEFR 100 (103)
Q Consensus 43 ~v~y~~~~~i~~~~v~~~~AGHIlGsa~~~i~~~~~~i~~~~~~~ysgD~~~~~~~~~ 100 (103)
...++..++++|+.+...+--||+=.+.+.|. +|+++ -..|+-+..++.++
T Consensus 345 i~~~~~~I~F~dV~f~y~~k~~iL~gvsf~I~-kGekV------aIvG~nGsGKSTil 395 (591)
T KOG0057|consen 345 IELFGGSIEFDDVHFSYGPKRKVLKGVSFTIP-KGEKV------AIVGSNGSGKSTIL 395 (591)
T ss_pred cccCCCcEEEEeeEEEeCCCCceecceeEEec-CCCEE------EEECCCCCCHHHHH
Confidence 34567778899999999999999999999998 77788 88898887776554
No 94
>KOG0272|consensus
Probab=30.18 E-value=26 Score=28.28 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=15.5
Q ss_pred EEEEEEeCCccccceEE
Q psy8351 55 IKFSAYNAGHVLGAAMF 71 (103)
Q Consensus 55 ~~v~~~~AGHIlGsa~~ 71 (103)
..|.|+|+|+-||++++
T Consensus 265 s~VafHPsG~~L~Tasf 281 (459)
T KOG0272|consen 265 SRVAFHPSGKFLGTASF 281 (459)
T ss_pred eeeeecCCCceeeeccc
Confidence 68999999999999876
No 95
>KOG3396|consensus
Probab=29.91 E-value=1.4e+02 Score=20.64 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=28.6
Q ss_pred CCHHHHHHHHhhcccccCCcEEEeCCEEEEEEeCCccccceEEEEEE
Q psy8351 29 YTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEI 75 (103)
Q Consensus 29 y~~~dv~~~~~~~~~v~y~~~~~i~~~~v~~~~AGHIlGsa~~~i~~ 75 (103)
-+.++.++-++.++. ++.|+.| .-+.=-.++||.|+|.+.||.
T Consensus 34 vt~e~F~krf~~mk~--~~~~Y~i--~Vied~~s~~vigtatL~IE~ 76 (150)
T KOG3396|consen 34 VTREQFEKRFEAMKK--SGDWYYI--VVIEDKESEKVIGTATLFIER 76 (150)
T ss_pred cCHHHHHHHHHHHHh--cCCcEEE--EEEEeCCcCeEEEEEEEEEeh
Confidence 356666655555442 3344444 455667899999999999995
No 96
>KOG1529|consensus
Probab=28.23 E-value=21 Score=27.21 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=13.9
Q ss_pred EEEEeCCccccceEEEE
Q psy8351 57 FSAYNAGHVLGAAMFLI 73 (103)
Q Consensus 57 v~~~~AGHIlGsa~~~i 73 (103)
..-...|||+||..+=+
T Consensus 192 ~~~~~ggHIpGa~n~P~ 208 (286)
T KOG1529|consen 192 RSGATGGHIPGAINFPF 208 (286)
T ss_pred cccCcCccCCCcccCCh
Confidence 66788999999987644
No 97
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=27.69 E-value=20 Score=27.75 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=12.7
Q ss_pred EeCCccccceEEEEE
Q psy8351 60 YNAGHVLGAAMFLIE 74 (103)
Q Consensus 60 ~~AGHIlGsa~~~i~ 74 (103)
|.+||||||..+-+.
T Consensus 27 f~~ghIpgAiniPl~ 41 (345)
T PRK11784 27 FAEGHIPGAINLPLL 41 (345)
T ss_pred HhcCCCCCeeeCCCC
Confidence 567999999999774
No 98
>PF10742 DUF2555: Protein of unknown function (DUF2555); InterPro: IPR019678 This entry represents conserved proteins found in Cyanobacteria. The function is not known.
Probab=27.59 E-value=46 Score=19.33 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHhhcccccCCcEEE
Q psy8351 27 MLYTESDLEKSMDKIETINFHEEKD 51 (103)
Q Consensus 27 p~y~~~dv~~~~~~~~~v~y~~~~~ 51 (103)
.-|+++++.++-++...=+|..+|+
T Consensus 7 ~~~t~~~va~LA~RLE~DdY~~pF~ 31 (57)
T PF10742_consen 7 AAFTEEDVAKLAKRLEEDDYPNPFD 31 (57)
T ss_pred hhcCHHHHHHHHHhhhhccCCchhh
Confidence 3588899999988888888888876
No 99
>KOG1180|consensus
Probab=26.03 E-value=31 Score=29.06 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=24.8
Q ss_pred HHHHHHHhhcccccCCcEEEe----------CCEEEEEEeCCccccceEEEEE
Q psy8351 32 SDLEKSMDKIETINFHEEKDV----------NGIKFSAYNAGHVLGAAMFLIE 74 (103)
Q Consensus 32 ~dv~~~~~~~~~v~y~~~~~i----------~~~~v~~~~AGHIlGsa~~~i~ 74 (103)
.|..+.+..+..+|..+-+-+ +--.+....+|-.++++-+.+.
T Consensus 416 ~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLv 468 (678)
T KOG1180|consen 416 PDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLV 468 (678)
T ss_pred HHHHHHHHHhccccccccccccchhcccEecChhhcccccccCCccceEEEEE
Confidence 455667777666665554433 1123344567777777766554
No 100
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=25.85 E-value=24 Score=26.95 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=12.3
Q ss_pred EeCCccccceEEEEE
Q psy8351 60 YNAGHVLGAAMFLIE 74 (103)
Q Consensus 60 ~~AGHIlGsa~~~i~ 74 (103)
|..||||||..+-+.
T Consensus 14 f~~ghipgAiniPl~ 28 (311)
T TIGR03167 14 FAEGHLPGAINLPLL 28 (311)
T ss_pred HhcCCCcCCEecccc
Confidence 467999999988774
No 101
>PLN02160 thiosulfate sulfurtransferase
Probab=25.44 E-value=23 Score=23.35 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=19.4
Q ss_pred CCCCCHHHHHHHHhhcccccCCcEEEeCCEEEEEEeCCccccc
Q psy8351 26 QMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGA 68 (103)
Q Consensus 26 ~p~y~~~dv~~~~~~~~~v~y~~~~~i~~~~v~~~~AGHIlGs 68 (103)
.+..+.+++.+.++. + ..-+++. +-.-|..|||+||
T Consensus 14 ~~~i~~~e~~~~~~~----~-~~lIDVR--~~~E~~~ghIpgA 49 (136)
T PLN02160 14 VVSVDVSQAKTLLQS----G-HQYLDVR--TQDEFRRGHCEAA 49 (136)
T ss_pred eeEeCHHHHHHHHhC----C-CEEEECC--CHHHHhcCCCCCc
Confidence 445677777777653 1 0123331 1112245999999
No 102
>PF07563 DUF1541: Protein of unknown function (DUF1541); InterPro: IPR011438 This domain is found in several hypothetical bacterial proteins as a tandem repeat.; PDB: 2KY9_A 4FIB_B.
Probab=24.71 E-value=1.2e+02 Score=17.38 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=15.8
Q ss_pred EeCCccccc--eEEEEEECCeEEEeeeeeEEEecCC
Q psy8351 60 YNAGHVLGA--AMFLIEIAGVKIARYLFLWYQVNVN 93 (103)
Q Consensus 60 ~~AGHIlGs--a~~~i~~~~~~i~~~~~~~ysgD~~ 93 (103)
..|.|.+|= |-..|...-... +|..|+.
T Consensus 8 l~AdHM~GM~gA~AtI~~a~~tt------vY~V~yt 37 (53)
T PF07563_consen 8 LTADHMPGMKGATATIDGAYDTT------VYMVDYT 37 (53)
T ss_dssp ESS-SSTTGTT-EEEEEEEEEEE------EEEEEEE
T ss_pred EecccCCccCCCEEEEEeeeeee------EEEEEEE
Confidence 578998873 334444334455 7877773
No 103
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=23.04 E-value=11 Score=28.25 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=24.2
Q ss_pred CEEEEEEeCCcc----ccceEEEEEE--CCeEEEeeeeeEEEecCCCCCc
Q psy8351 54 GIKFSAYNAGHV----LGAAMFLIEI--AGVKIARYLFLWYQVNVNQNNQ 97 (103)
Q Consensus 54 ~~~v~~~~AGHI----lGsa~~~i~~--~~~~i~~~~~~~ysgD~~~~~~ 97 (103)
+..+++..+||. .-.-...+.. +|++| +||||-.....
T Consensus 161 g~~~~~l~~~h~~~~~~~~~~~~~~~~~~G~~v------~ysGDT~p~~~ 204 (292)
T COG1234 161 GPLITALKAGHPVEERVITPADRIGEPRKGKSV------VYSGDTRPCDE 204 (292)
T ss_pred chHHHHHhCCCceeeeecCHHHhccccCCCcEE------EEECCCCCCHH
Confidence 577888899996 2222222222 34677 99999876543
No 104
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=22.23 E-value=1.9e+02 Score=19.49 Aligned_cols=25 Identities=24% Similarity=0.153 Sum_probs=19.4
Q ss_pred CCEEEEEEeCCccccceEEEEEECC
Q psy8351 53 NGIKFSAYNAGHVLGAAMFLIEIAG 77 (103)
Q Consensus 53 ~~~~v~~~~AGHIlGsa~~~i~~~~ 77 (103)
++.-+...-.+.+|||+.+.++.+.
T Consensus 37 ~~~l~aArFNdRlLgAv~v~~~~~~ 61 (128)
T PF12568_consen 37 GHRLFAARFNDRLLGAVKVTISGQQ 61 (128)
T ss_dssp SEEEEEEEETTEEEEEEEEEEETTE
T ss_pred CCeEEEEEechheeeeEEEEEcCcc
Confidence 3556677888999999999987443
No 105
>KOG1136|consensus
Probab=21.56 E-value=1.7e+02 Score=23.49 Aligned_cols=28 Identities=32% Similarity=0.544 Sum_probs=25.8
Q ss_pred CCEEEEEEeCCccccceEEEEEECCeEE
Q psy8351 53 NGIKFSAYNAGHVLGAAMFLIEIAGVKI 80 (103)
Q Consensus 53 ~~~~v~~~~AGHIlGsa~~~i~~~~~~i 80 (103)
..++++...||-=.|-+.+++.++|++|
T Consensus 2 p~i~v~pLGAGQdvGrSCilvsi~Gk~i 29 (501)
T KOG1136|consen 2 PEIKVTPLGAGQDVGRSCILVSIGGKNI 29 (501)
T ss_pred CcceEEeccCCcccCceEEEEEECCcEE
Confidence 3578999999999999999999999998
No 106
>PF08844 DUF1815: Domain of unknown function (DUF1815); InterPro: IPR014943 This entry is about 100 amino acids in length and is functionally uncharacterised.
Probab=20.82 E-value=2.5e+02 Score=18.12 Aligned_cols=39 Identities=18% Similarity=0.395 Sum_probs=31.3
Q ss_pred CCEEEEEEeC--CccccceEEEEEECCeEEEeeeeeEEEecCCCC
Q psy8351 53 NGIKFSAYNA--GHVLGAAMFLIEIAGVKIARYLFLWYQVNVNQN 95 (103)
Q Consensus 53 ~~~~v~~~~A--GHIlGsa~~~i~~~~~~i~~~~~~~ysgD~~~~ 95 (103)
.|+..+.|.. |+=.-||++.+..++.-++| +...|++..
T Consensus 29 rG~~AsCYtC~dG~~~~~ASFmv~lg~~HliR----FLVSd~GIs 69 (105)
T PF08844_consen 29 RGYLASCYTCGDGRDMNSASFMVSLGDNHLIR----FLVSDYGIS 69 (105)
T ss_pred CCceeEEEecCCCCCCCceeEEEEcCCCcEEE----EEEecCCee
Confidence 4888999999 88888999999998766655 667788754
No 107
>PF14811 TPD: Protein of unknown function TPD sequence-motif
Probab=20.57 E-value=2.9e+02 Score=18.77 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=28.6
Q ss_pred CCCCCCHHHHHHH-HhhcccccCCcEEEeCCEEEEEEeCCccc
Q psy8351 25 EQMLYTESDLEKS-MDKIETINFHEEKDVNGIKFSAYNAGHVL 66 (103)
Q Consensus 25 ~~p~y~~~dv~~~-~~~~~~v~y~~~~~i~~~~v~~~~AGHIl 66 (103)
..+.++++|+++. +.+.=.+.+..++.++|.-|.+..|-=.-
T Consensus 47 gi~f~tE~~lR~~g~~kTPDi~l~~Pi~i~g~~V~WIESKa~F 89 (139)
T PF14811_consen 47 GIPFLTEDDLRARGYDKTPDIKLEVPIAINGHVVNWIESKAYF 89 (139)
T ss_pred CCccccHHHHHHcCCCCCCCEEecCCceECCeEEeeeehhhhc
Confidence 4678899998866 44445666777777877777766654333
No 108
>PF01241 PSI_PSAK: Photosystem I psaG / psaK; InterPro: IPR000549 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. Photosystem I (PSI) [] is an integral membrane protein complex that uses light energy to mediate electron transfer from plastocyanin to ferredoxin. It is found in the chloroplasts of plants and cyanobacteria. PSI is composed of at least 14 different subunits, two of which, PSI-G (gene psaG) and PSI-K (gene psaK), are small hydrophobic proteins of about 7 to 9 Kd and evolutionary related []. Both seem to contain two transmembrane regions. Cyanobacteria contain only PSI-K.; GO: 0015979 photosynthesis, 0009522 photosystem I, 0016020 membrane; PDB: 2O01_G 2WSF_G 2WSE_G 2WSC_G 3PCQ_K 1JB0_K.
Probab=20.42 E-value=29 Score=21.50 Aligned_cols=11 Identities=36% Similarity=0.945 Sum_probs=7.6
Q ss_pred eCCccccceEE
Q psy8351 61 NAGHVLGAAMF 71 (103)
Q Consensus 61 ~AGHIlGsa~~ 71 (103)
.-|||+|+..+
T Consensus 62 SlGHiiG~g~I 72 (81)
T PF01241_consen 62 SLGHIIGAGII 72 (81)
T ss_dssp SSSCCCSSSCT
T ss_pred hHHHHHHHHHH
Confidence 45888887654
No 109
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=20.02 E-value=1.4e+02 Score=17.40 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=15.3
Q ss_pred CCEEEEEE-eCCccccceEEEE
Q psy8351 53 NGIKFSAY-NAGHVLGAAMFLI 73 (103)
Q Consensus 53 ~~~~v~~~-~AGHIlGsa~~~i 73 (103)
++-+|+.. .+|++||+..|.|
T Consensus 44 G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 44 GDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred cCEEEEEEcCCCCEEEEEEEEE
Confidence 45777777 4588888887765
Done!