Your job contains 1 sequence.
>psy8351
MTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAY
NAGHVLGAAMFLIEIAGVKIARYLFLWYQVNVNQNNQEFRIGT
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8351
(103 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0261065 - symbol:Cpsf73 "Cleavage and polyadenylat... 358 5.1e-32 1
UNIPROTKB|C9JZH6 - symbol:CPSF3 "Cleavage and polyadenyla... 344 2.6e-31 1
UNIPROTKB|G5E9W3 - symbol:CPSF3 "Cleavage and polyadenyla... 346 8.5e-31 1
UNIPROTKB|P79101 - symbol:CPSF3 "Cleavage and polyadenyla... 346 1.0e-30 1
UNIPROTKB|Q9UKF6 - symbol:CPSF3 "Cleavage and polyadenyla... 346 1.0e-30 1
MGI|MGI:1859328 - symbol:Cpsf3 "cleavage and polyadenylat... 346 1.0e-30 1
UNIPROTKB|F1NKW5 - symbol:CPSF3 "Uncharacterized protein"... 346 1.0e-30 1
UNIPROTKB|G3V6W7 - symbol:Cpsf3 "Protein Cpsf3" species:1... 346 1.0e-30 1
ZFIN|ZDB-GENE-030131-3275 - symbol:cpsf3 "cleavage and po... 346 1.1e-30 1
UNIPROTKB|E2R7R2 - symbol:CPSF3 "Uncharacterized protein"... 346 1.2e-30 1
RGD|1305767 - symbol:Cpsf3 "cleavage and polyadenylation ... 343 2.2e-30 1
UNIPROTKB|I3LKR1 - symbol:CPSF3 "Uncharacterized protein"... 333 2.7e-29 1
TAIR|locus:2206076 - symbol:CPSF73-I "cleavage and polyad... 292 7.5e-25 1
WB|WBGene00013460 - symbol:cpsf-3 species:6239 "Caenorhab... 267 3.9e-22 1
DICTYBASE|DDB_G0274799 - symbol:cpsf3 "cleavage and polya... 259 3.3e-21 1
POMBASE|SPAC17G6.16c - symbol:ysh1 "mRNA cleavage and pol... 255 8.6e-21 1
SGD|S000004267 - symbol:YSH1 "Putative endoribonuclease" ... 251 2.4e-20 1
CGD|CAL0005344 - symbol:orf19.5486 species:5476 "Candida ... 244 1.7e-19 1
UNIPROTKB|Q59P50 - symbol:YSH1 "Endoribonuclease YSH1" sp... 244 1.7e-19 1
ASPGD|ASPL0000060573 - symbol:AN0990 species:162425 "Emer... 214 2.8e-16 1
GENEDB_PFALCIPARUM|PF14_0364 - symbol:PF14_0364 "cleavage... 166 3.0e-14 3
UNIPROTKB|Q8IL83 - symbol:PF14_0364 "Cleavage and polyade... 166 3.0e-14 3
WB|WBGene00008642 - symbol:F10B5.8 species:6239 "Caenorha... 131 7.2e-09 2
UNIPROTKB|E9PI75 - symbol:CPSF3L "Integrator complex subu... 132 7.6e-09 1
UNIPROTKB|E9PIG1 - symbol:CPSF3L "Integrator complex subu... 132 1.6e-08 1
UNIPROTKB|E9PNS4 - symbol:CPSF3L "Integrator complex subu... 132 2.3e-08 1
UNIPROTKB|F1NV30 - symbol:CPSF3L "Integrator complex subu... 134 5.8e-08 1
UNIPROTKB|Q5ZIH0 - symbol:CPSF3L "Integrator complex subu... 134 5.8e-08 1
UNIPROTKB|E2QY53 - symbol:CPSF3L "Uncharacterized protein... 132 9.6e-08 1
UNIPROTKB|Q5TA45 - symbol:CPSF3L "Integrator complex subu... 132 9.6e-08 1
MGI|MGI:1919207 - symbol:Cpsf3l "cleavage and polyadenyla... 132 9.6e-08 1
RGD|1306841 - symbol:Cpsf3l "cleavage and polyadenylation... 132 9.6e-08 1
UNIPROTKB|G3V1S5 - symbol:CPSF3L "Integrator complex subu... 132 9.7e-08 1
UNIPROTKB|E1B7Q9 - symbol:CPSF3L "Integrator complex subu... 129 2.0e-07 1
DICTYBASE|DDB_G0278189 - symbol:ints11 "integrator comple... 117 4.6e-07 2
FB|FBgn0039691 - symbol:IntS11 "Integrator 11" species:72... 124 6.9e-07 1
UNIPROTKB|Q2YDM2 - symbol:CPSF3L "Integrator complex subu... 124 6.9e-07 1
ZFIN|ZDB-GENE-050522-13 - symbol:cpsf3l "cleavage and pol... 122 1.1e-06 1
UNIPROTKB|F1RJE8 - symbol:CPSF3L "Uncharacterized protein... 120 1.9e-06 1
TAIR|locus:2065368 - symbol:CPSF73-II "AT2G01730" species... 99 0.00034 1
DICTYBASE|DDB_G0282473 - symbol:ints9 "integrator complex... 89 0.00043 2
>FB|FBgn0261065 [details] [associations]
symbol:Cpsf73 "Cleavage and polyadenylation specificity
factor 73" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS;NAS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS;IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006398 "histone mRNA 3'-end
processing" evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR001279
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 EMBL:AE014297 GO:GO:0022008
GO:GO:0003677 GO:GO:0006378 GO:GO:0016787 GO:GO:0005847
GO:GO:0006379 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 GO:GO:0006398 KO:K14403 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 EMBL:AY119128 RefSeq:NP_650738.1
UniGene:Dm.13714 SMR:Q9VE51 IntAct:Q9VE51 MINT:MINT-804945
STRING:Q9VE51 EnsemblMetazoa:FBtr0083690 GeneID:42240
KEGG:dme:Dmel_CG7698 UCSC:CG7698-RA CTD:42240 FlyBase:FBgn0261065
InParanoid:Q9VE51 OrthoDB:EOG4P5HR4 GenomeRNAi:42240 NextBio:827838
Uniprot:Q9VE51
Length = 684
Score = 358 (131.1 bits), Expect = 5.1e-32, P = 5.1e-32
Identities = 67/80 (83%), Positives = 76/80 (95%)
Query: 1 MTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAY 60
MTHATKAIYRW+LSDYIK+SNISTEQMLYTE+DLE SM+KIETINFHEE+DV G++F AY
Sbjct: 101 MTHATKAIYRWMLSDYIKISNISTEQMLYTEADLEASMEKIETINFHEERDVMGVRFCAY 160
Query: 61 NAGHVLGAAMFLIEIAGVKI 80
AGHVLGAAMF+IEIAG+KI
Sbjct: 161 IAGHVLGAAMFMIEIAGIKI 180
>UNIPROTKB|C9JZH6 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation-specificity
factor subunit 3" species:9606 "Homo sapiens" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 GO:GO:0003723
GO:GO:0004521 GO:GO:0008409 EMBL:AC080162 HGNC:HGNC:2326
ChiTaRS:CPSF3 IPI:IPI00807384 ProteinModelPortal:C9JZH6 SMR:C9JZH6
STRING:C9JZH6 Ensembl:ENST00000475482 HOGENOM:HOG000191757
ArrayExpress:C9JZH6 Bgee:C9JZH6 Uniprot:C9JZH6
Length = 136
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 66/79 (83%), Positives = 73/79 (92%)
Query: 1 MTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAY 60
MTHATKAIYRWLLSDY+KVSNIS + MLYTE+DLE+SMDKIETINFHE K+V GIKF Y
Sbjct: 58 MTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCY 117
Query: 61 NAGHVLGAAMFLIEIAGVK 79
+AGHVLGAAMF+IEIAGVK
Sbjct: 118 HAGHVLGAAMFMIEIAGVK 136
>UNIPROTKB|G5E9W3 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation-specificity
factor subunit 3" species:9606 "Homo sapiens" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:CH471053 GO:GO:0003723 GO:GO:0004521
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098 GO:GO:0008409
EMBL:AC080162 UniGene:Hs.515972 HGNC:HGNC:2326 ChiTaRS:CPSF3
ProteinModelPortal:G5E9W3 SMR:G5E9W3 PRIDE:G5E9W3
Ensembl:ENST00000460593 ArrayExpress:G5E9W3 Bgee:G5E9W3
Uniprot:G5E9W3
Length = 647
Score = 346 (126.9 bits), Expect = 8.5e-31, P = 8.5e-31
Identities = 66/80 (82%), Positives = 74/80 (92%)
Query: 1 MTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAY 60
MTHATKAIYRWLLSDY+KVSNIS + MLYTE+DLE+SMDKIETINFHE K+V GIKF Y
Sbjct: 58 MTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCY 117
Query: 61 NAGHVLGAAMFLIEIAGVKI 80
+AGHVLGAAMF+IEIAGVK+
Sbjct: 118 HAGHVLGAAMFMIEIAGVKL 137
>UNIPROTKB|P79101 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation specificity
factor subunit 3" species:9913 "Bos taurus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006398 "histone mRNA 3'-end processing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0004521
"endoribonuclease activity" evidence=ISS] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0046872 GO:GO:0003723 GO:GO:0030529 GO:GO:0004521
GO:GO:0005847 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 GO:GO:0006398 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
EMBL:X95906 EMBL:BC104553 IPI:IPI00708839 RefSeq:NP_776709.1
UniGene:Bt.5045 ProteinModelPortal:P79101 SMR:P79101 STRING:P79101
PRIDE:P79101 Ensembl:ENSBTAT00000026303 GeneID:281712
KEGG:bta:281712 CTD:51692 GeneTree:ENSGT00700000104485
HOVERGEN:HBG051107 InParanoid:P79101 OrthoDB:EOG4FN4H6
NextBio:20805634 ArrayExpress:P79101 GO:GO:0008409 Uniprot:P79101
Length = 684
Score = 346 (126.9 bits), Expect = 1.0e-30, P = 1.0e-30
Identities = 66/80 (82%), Positives = 74/80 (92%)
Query: 1 MTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAY 60
MTHATKAIYRWLLSDY+KVSNIS + MLYTE+DLE+SMDKIETINFHE K+V GIKF Y
Sbjct: 95 MTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCY 154
Query: 61 NAGHVLGAAMFLIEIAGVKI 80
+AGHVLGAAMF+IEIAGVK+
Sbjct: 155 HAGHVLGAAMFMIEIAGVKL 174
>UNIPROTKB|Q9UKF6 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation specificity
factor subunit 3" species:9606 "Homo sapiens" [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISS] [GO:0004521
"endoribonuclease activity" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
EMBL:AF017269 Pfam:PF07521 EMBL:AF171877 EMBL:CH471053
GO:GO:0046872 Reactome:REACT_1675 GO:GO:0006378 GO:GO:0003723
GO:GO:0030529 GO:GO:0006406 GO:GO:0004521 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0005847 GO:GO:0006379 GO:GO:0006369
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 Reactome:REACT_78 GO:GO:0006398 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
CTD:51692 HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6 GO:GO:0008409
EMBL:AC080162 EMBL:BC011654 EMBL:BC020211 IPI:IPI00007818
RefSeq:NP_057291.1 UniGene:Hs.515972 PDB:2I7T PDB:2I7V PDBsum:2I7T
PDBsum:2I7V ProteinModelPortal:Q9UKF6 SMR:Q9UKF6 DIP:DIP-42501N
MINT:MINT-1742891 STRING:Q9UKF6 PhosphoSite:Q9UKF6 DMDM:18203503
PaxDb:Q9UKF6 PeptideAtlas:Q9UKF6 PRIDE:Q9UKF6 DNASU:51692
Ensembl:ENST00000238112 GeneID:51692 KEGG:hsa:51692 UCSC:uc002qzo.1
GeneCards:GC02P009514 HGNC:HGNC:2326 HPA:HPA034657 MIM:606029
neXtProt:NX_Q9UKF6 PharmGKB:PA26843 InParanoid:Q9UKF6
PhylomeDB:Q9UKF6 ChiTaRS:CPSF3 EvolutionaryTrace:Q9UKF6
GenomeRNAi:51692 NextBio:55702 ArrayExpress:Q9UKF6 Bgee:Q9UKF6
CleanEx:HS_CPSF3 Genevestigator:Q9UKF6 GermOnline:ENSG00000119203
Uniprot:Q9UKF6
Length = 684
Score = 346 (126.9 bits), Expect = 1.0e-30, P = 1.0e-30
Identities = 66/80 (82%), Positives = 74/80 (92%)
Query: 1 MTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAY 60
MTHATKAIYRWLLSDY+KVSNIS + MLYTE+DLE+SMDKIETINFHE K+V GIKF Y
Sbjct: 95 MTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCY 154
Query: 61 NAGHVLGAAMFLIEIAGVKI 80
+AGHVLGAAMF+IEIAGVK+
Sbjct: 155 HAGHVLGAAMFMIEIAGVKL 174
>MGI|MGI:1859328 [details] [associations]
symbol:Cpsf3 "cleavage and polyadenylation specificity
factor 3" species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISO;IDA] [GO:0006378 "mRNA polyadenylation" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006398 "histone
mRNA 3'-end processing" evidence=ISO;IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
MGI:MGI:1859328 GO:GO:0046872 GO:GO:0003723 GO:GO:0030529
GO:GO:0004521 GO:GO:0005847 eggNOG:COG1236 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 GO:GO:0006398
HOGENOM:HOG000203394 KO:K14403 OMA:YVSFSAH InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 CTD:51692 GeneTree:ENSGT00700000104485
HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6 GO:GO:0008409 ChiTaRS:CPSF3
EMBL:AF203969 EMBL:BC023297 IPI:IPI00135099 RefSeq:NP_061283.2
UniGene:Mm.356778 ProteinModelPortal:Q9QXK7 SMR:Q9QXK7
STRING:Q9QXK7 PhosphoSite:Q9QXK7 PaxDb:Q9QXK7 PRIDE:Q9QXK7
Ensembl:ENSMUST00000067284 GeneID:54451 KEGG:mmu:54451
InParanoid:Q8CIM0 NextBio:311332 Bgee:Q9QXK7 CleanEx:MM_CPSF3
Genevestigator:Q9QXK7 GermOnline:ENSMUSG00000054309 Uniprot:Q9QXK7
Length = 684
Score = 346 (126.9 bits), Expect = 1.0e-30, P = 1.0e-30
Identities = 66/80 (82%), Positives = 74/80 (92%)
Query: 1 MTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAY 60
MTHATKAIYRWLLSDY+KVSNIS + MLYTE+DLE+SMDKIETINFHE K+V GIKF Y
Sbjct: 95 MTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCY 154
Query: 61 NAGHVLGAAMFLIEIAGVKI 80
+AGHVLGAAMF+IEIAGVK+
Sbjct: 155 HAGHVLGAAMFMIEIAGVKL 174
>UNIPROTKB|F1NKW5 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0003723 GO:GO:0004521 GO:GO:0005847
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0008409 EMBL:AADN02018718
IPI:IPI00600642 Ensembl:ENSGALT00000026493 Uniprot:F1NKW5
Length = 685
Score = 346 (126.9 bits), Expect = 1.0e-30, P = 1.0e-30
Identities = 66/80 (82%), Positives = 74/80 (92%)
Query: 1 MTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAY 60
MTHATKAIYRWLLSDY+KVSNIS + MLYTE+DLE+SMDKIETINFHE K+V GIKF Y
Sbjct: 95 MTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCY 154
Query: 61 NAGHVLGAAMFLIEIAGVKI 80
+AGHVLGAAMF+IEIAGVK+
Sbjct: 155 HAGHVLGAAMFMIEIAGVKL 174
>UNIPROTKB|G3V6W7 [details] [associations]
symbol:Cpsf3 "Protein Cpsf3" species:10116 "Rattus
norvegicus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
RGD:1305767 GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 EMBL:CH473947 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 UniGene:Rn.100522
Ensembl:ENSRNOT00000009652 Uniprot:G3V6W7
Length = 685
Score = 346 (126.9 bits), Expect = 1.0e-30, P = 1.0e-30
Identities = 66/80 (82%), Positives = 74/80 (92%)
Query: 1 MTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAY 60
MTHATKAIYRWLLSDY+KVSNIS + MLYTE+DLE+SMDKIETINFHE K+V GIKF Y
Sbjct: 95 MTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCY 154
Query: 61 NAGHVLGAAMFLIEIAGVKI 80
+AGHVLGAAMF+IEIAGVK+
Sbjct: 155 HAGHVLGAAMFMIEIAGVKL 174
>ZFIN|ZDB-GENE-030131-3275 [details] [associations]
symbol:cpsf3 "cleavage and polyadenylation
specific factor 3" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 ZFIN:ZDB-GENE-030131-3275 GO:GO:0016787
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098 CTD:51692
HOVERGEN:HBG051107 EMBL:AY648793 IPI:IPI00509063
RefSeq:NP_001003836.1 UniGene:Dr.77231 ProteinModelPortal:Q6DRG6
SMR:Q6DRG6 STRING:Q6DRG6 GeneID:324554 KEGG:dre:324554
NextBio:20808833 ArrayExpress:Q6DRG6 Uniprot:Q6DRG6
Length = 690
Score = 346 (126.9 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 66/80 (82%), Positives = 74/80 (92%)
Query: 1 MTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAY 60
MTHATKAIYRWLLSDY+KVSNIS + MLYTE+DLE+SMDKIETINFHE K+V GIKF Y
Sbjct: 102 MTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCY 161
Query: 61 NAGHVLGAAMFLIEIAGVKI 80
+AGHVLGAAMF+IEIAGVK+
Sbjct: 162 HAGHVLGAAMFMIEIAGVKL 181
>UNIPROTKB|E2R7R2 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718
SMART:SM01098 GeneTree:ENSGT00700000104485 EMBL:AAEX03010701
RefSeq:XP_003639652.1 Ensembl:ENSCAFT00000005417 GeneID:100856414
KEGG:cfa:100856414 Uniprot:E2R7R2
Length = 717
Score = 346 (126.9 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 66/80 (82%), Positives = 74/80 (92%)
Query: 1 MTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAY 60
MTHATKAIYRWLLSDY+KVSNIS + MLYTE+DLE+SMDKIETINFHE K+V GIKF Y
Sbjct: 128 MTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCY 187
Query: 61 NAGHVLGAAMFLIEIAGVKI 80
+AGHVLGAAMF+IEIAGVK+
Sbjct: 188 HAGHVLGAAMFMIEIAGVKL 207
>RGD|1305767 [details] [associations]
symbol:Cpsf3 "cleavage and polyadenylation specific factor 3,
73kDa" species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0004521 "endoribonuclease activity" evidence=ISO]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISO] [GO:0006398 "histone mRNA 3'-end processing"
evidence=ISO] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISO] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 RGD:1305767 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718 Pfam:PF11718
SMART:SM01098 CTD:51692 HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6
UniGene:Rn.100522 EMBL:BC099817 IPI:IPI00365532
RefSeq:NP_001025201.1 ProteinModelPortal:Q499P4 SMR:Q499P4
STRING:Q499P4 GeneID:298916 KEGG:rno:298916 InParanoid:Q499P4
NextBio:644507 Genevestigator:Q499P4 Uniprot:Q499P4
Length = 685
Score = 343 (125.8 bits), Expect = 2.2e-30, P = 2.2e-30
Identities = 65/80 (81%), Positives = 74/80 (92%)
Query: 1 MTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAY 60
MTHATKAIYRWLLSDY+KVSNIS + MLYTE+DLE+SMDKIETINFHE K+V GIKF Y
Sbjct: 95 MTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCY 154
Query: 61 NAGHVLGAAMFLIEIAGVKI 80
+AGHVLGAAMF+IEIAG+K+
Sbjct: 155 HAGHVLGAAMFMIEIAGMKL 174
>UNIPROTKB|I3LKR1 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
[GO:0006398 "histone mRNA 3'-end processing" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0003723 GO:GO:0004521 GO:GO:0005847 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0008409 EMBL:FP312696
Ensembl:ENSSSCT00000027309 Uniprot:I3LKR1
Length = 687
Score = 333 (122.3 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 66/83 (79%), Positives = 74/83 (89%)
Query: 1 MTHATKAIYRWLLSDYIKV---SNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKF 57
MTHATKAIYRWLLSDY+KV SNIS + MLYTE+DLE+SMDKIETINFHE K+V GIKF
Sbjct: 95 MTHATKAIYRWLLSDYVKVRKCSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKF 154
Query: 58 SAYNAGHVLGAAMFLIEIAGVKI 80
Y+AGHVLGAAMF+IEIAGVK+
Sbjct: 155 WCYHAGHVLGAAMFMIEIAGVKL 177
>TAIR|locus:2206076 [details] [associations]
symbol:CPSF73-I "cleavage and polyadenylation specificity
factor 73-I" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0006397 "mRNA processing" evidence=RCA] [GO:0009855
"determination of bilateral symmetry" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010073 "meristem
maintenance" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0031507 "heterochromatin assembly" evidence=RCA]
[GO:0045787 "positive regulation of cell cycle" evidence=RCA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006397
GO:GO:0090305 EMBL:AC018908 GO:GO:0004518 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
EMBL:AY140900 EMBL:AY150478 EMBL:AY074280 EMBL:AK316692
EMBL:AK316794 IPI:IPI00533462 PIR:G96635 RefSeq:NP_001031215.1
RefSeq:NP_176297.1 RefSeq:NP_849835.1 UniGene:At.23510
ProteinModelPortal:Q9C952 SMR:Q9C952 IntAct:Q9C952 STRING:Q9C952
PaxDb:Q9C952 PRIDE:Q9C952 EnsemblPlants:AT1G61010.1
EnsemblPlants:AT1G61010.2 EnsemblPlants:AT1G61010.3 GeneID:842393
KEGG:ath:AT1G61010 TAIR:At1g61010 HOGENOM:HOG000203394
InParanoid:Q9C952 KO:K14403 OMA:YVSFSAH PhylomeDB:Q9C952
ProtClustDB:CLSN2681829 Genevestigator:Q9C952 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 Uniprot:Q9C952
Length = 693
Score = 292 (107.8 bits), Expect = 7.5e-25, P = 7.5e-25
Identities = 54/80 (67%), Positives = 67/80 (83%)
Query: 1 MTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAY 60
MTHATKAIY+ LL+DY+KVS +S E ML+ E D+ KSMDKIE I+FH+ +VNGIKF Y
Sbjct: 105 MTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCY 164
Query: 61 NAGHVLGAAMFLIEIAGVKI 80
AGHVLGAAMF+++IAGV+I
Sbjct: 165 TAGHVLGAAMFMVDIAGVRI 184
>WB|WBGene00013460 [details] [associations]
symbol:cpsf-3 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0016787 eggNOG:COG1236 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 EMBL:AL132951 RefSeq:NP_502553.2
ProteinModelPortal:Q95PY8 SMR:Q95PY8 STRING:Q95PY8 PaxDb:Q95PY8
EnsemblMetazoa:Y67H2A.1.1 EnsemblMetazoa:Y67H2A.1.2 GeneID:178285
KEGG:cel:CELE_Y67H2A.1 UCSC:Y67H2A.1 CTD:178285 WormBase:Y67H2A.1
InParanoid:Q95PY8 NextBio:900506 Uniprot:Q95PY8
Length = 707
Score = 267 (99.0 bits), Expect = 3.9e-22, P = 3.9e-22
Identities = 53/82 (64%), Positives = 63/82 (76%)
Query: 1 MTHATKAIYRWLLSDYIKVSNIS--TEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFS 58
MTHATKAIYR LL DY+++S LYTE DLEKSM KIETI+F E+K+VNGI+F
Sbjct: 94 MTHATKAIYRMLLGDYVRISKYGGPDRNQLYTEDDLEKSMAKIETIDFREQKEVNGIRFW 153
Query: 59 AYNAGHVLGAAMFLIEIAGVKI 80
Y AGHVLGA F+IEIAGV++
Sbjct: 154 PYVAGHVLGACQFMIEIAGVRV 175
>DICTYBASE|DDB_G0274799 [details] [associations]
symbol:cpsf3 "cleavage and polyadenylation
specificity factor 73 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IC] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0274799 Pfam:PF07521 GO:GO:0046872 GO:GO:0006378
GenomeReviews:CM000151_GR EMBL:AAFI02000012 GO:GO:0003730
GO:GO:0004519 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
RefSeq:XP_643926.1 ProteinModelPortal:Q86A79 SMR:Q86A79
STRING:Q86A79 EnsemblProtists:DDB0233696 GeneID:8619353
KEGG:ddi:DDB_G0274799 ProtClustDB:CLSZ2431003 Uniprot:Q86A79
Length = 774
Score = 259 (96.2 bits), Expect = 3.3e-21, P = 3.3e-21
Identities = 50/81 (61%), Positives = 67/81 (82%)
Query: 1 MTHATKAIYRWLLSDYIKVSNISTEQ-MLYTESDLEKSMDKIETINFHEEKDVNGIKFSA 59
MTH TKAIY LLSDY+KVSNI+ + ML+ +SDL++S++KIE + + ++ + NGIK +
Sbjct: 121 MTHPTKAIYGMLLSDYVKVSNITRDDDMLFDKSDLDRSLEKIEKVRYRQKVEHNGIKVTC 180
Query: 60 YNAGHVLGAAMFLIEIAGVKI 80
+NAGHVLGAAMF+IEIAGVKI
Sbjct: 181 FNAGHVLGAAMFMIEIAGVKI 201
>POMBASE|SPAC17G6.16c [details] [associations]
symbol:ysh1 "mRNA cleavage and polyadenylation
specificity factor complex endoribonuclease subunit Ysh1"
species:4896 "Schizosaccharomyces pombe" [GO:0004521
"endoribonuclease activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IC]
[GO:0006379 "mRNA cleavage" evidence=IC] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 PomBase:SPAC17G6.16c Pfam:PF07521 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0006378
GO:GO:0004521 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000203394 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
OrthoDB:EOG41ZJK7 PIR:T37848 RefSeq:NP_594263.2 STRING:O13794
EnsemblFungi:SPAC17G6.16c.1 GeneID:2542258 NextBio:20803322
Uniprot:O13794
Length = 757
Score = 255 (94.8 bits), Expect = 8.6e-21, P = 8.6e-21
Identities = 45/80 (56%), Positives = 60/80 (75%)
Query: 1 MTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNGIKFSAY 60
MTH TKA+ +WLLSDY+KVSN+ E LY E DL + D+IE +++H +V GIKF+ Y
Sbjct: 102 MTHPTKAVCKWLLSDYVKVSNVGMEDQLYDEKDLLAAFDRIEAVDYHSTIEVEGIKFTPY 161
Query: 61 NAGHVLGAAMFLIEIAGVKI 80
+AGHVLGA M+ +E+AGV I
Sbjct: 162 HAGHVLGACMYFVEMAGVNI 181
>SGD|S000004267 [details] [associations]
symbol:YSH1 "Putative endoribonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IMP] [GO:0006379 "mRNA
cleavage" evidence=IMP] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=IMP] [GO:0031126 "snoRNA 3'-end
processing" evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP]
[GO:0034247 "snoRNA splicing" evidence=IMP] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA;IPI] [GO:0005849 "mRNA cleavage factor complex"
evidence=IPI] [GO:0004521 "endoribonuclease activity"
evidence=ISS;IMP] [GO:0003723 "RNA binding" evidence=IC]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 SGD:S000004267
Pfam:PF07521 GO:GO:0046872 GO:GO:0006378 EMBL:BK006945
GO:GO:0004521 GO:GO:0005847 GO:GO:0006379 GO:GO:0006369
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 EMBL:U17245 HOGENOM:HOG000203394 KO:K14403
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0031126 GO:GO:0034247
OMA:EISFAAH OrthoDB:EOG41ZJK7 PIR:S51413 RefSeq:NP_013379.1
ProteinModelPortal:Q06224 SMR:Q06224 DIP:DIP-2470N IntAct:Q06224
MINT:MINT-375457 STRING:Q06224 PaxDb:Q06224 PeptideAtlas:Q06224
EnsemblFungi:YLR277C GeneID:850983 KEGG:sce:YLR277C CYGD:YLR277c
NextBio:967501 Genevestigator:Q06224 GermOnline:YLR277C
Uniprot:Q06224
Length = 779
Score = 251 (93.4 bits), Expect = 2.4e-20, P = 2.4e-20
Identities = 50/88 (56%), Positives = 68/88 (77%)
Query: 1 MTHATKAIYRWLLSDYIKVSNI--STEQM------LYTESDLEKSMDKIETINFHEEKDV 52
MTH TKAIYRWLL D+++V++I S+ M L+++ DL S DKIET+++H DV
Sbjct: 92 MTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDLVDSFDKIETVDYHSTVDV 151
Query: 53 NGIKFSAYNAGHVLGAAMFLIEIAGVKI 80
NGIKF+A++AGHVLGAAMF IEIAG+++
Sbjct: 152 NGIKFTAFHAGHVLGAAMFQIEIAGLRV 179
>CGD|CAL0005344 [details] [associations]
symbol:orf19.5486 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0004521 "endoribonuclease
activity" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0034247 "snoRNA splicing"
evidence=IEA] [GO:0031126 "snoRNA 3'-end processing" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006369 "termination
of RNA polymerase II transcription" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 CGD:CAL0005344 Pfam:PF07521 GO:GO:0005634
GO:GO:0042493 GO:GO:0046872 GO:GO:0006397 GO:GO:0090305
GO:GO:0004519 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 KO:K14403 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 EMBL:AACQ01000196 EMBL:AACQ01000195
RefSeq:XP_711478.1 RefSeq:XP_711502.1 ProteinModelPortal:Q59P50
STRING:Q59P50 GeneID:3646887 GeneID:3646911 KEGG:cal:CaO19.12941
KEGG:cal:CaO19.5486 Uniprot:Q59P50
Length = 870
Score = 244 (91.0 bits), Expect = 1.7e-19, P = 1.7e-19
Identities = 45/90 (50%), Positives = 66/90 (73%)
Query: 1 MTHATKAIYRWLLSDYIKVSNISTEQM----------LYTESDLEKSMDKIETINFHEEK 50
MTHATKAIYRWL+ D+++V++I + LYT+ D+ KS D+IETI++H
Sbjct: 183 MTHATKAIYRWLMQDFVRVTSIGNSRSEDGGGGEGSNLYTDDDIMKSFDRIETIDYHSTM 242
Query: 51 DVNGIKFSAYNAGHVLGAAMFLIEIAGVKI 80
+++GI+F+AY+AGHVLGA M+ IEI G+K+
Sbjct: 243 EIDGIRFTAYHAGHVLGACMYFIEIGGLKV 272
>UNIPROTKB|Q59P50 [details] [associations]
symbol:YSH1 "Endoribonuclease YSH1" species:237561 "Candida
albicans SC5314" [GO:0042493 "response to drug" evidence=IMP]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 CGD:CAL0005344
Pfam:PF07521 GO:GO:0005634 GO:GO:0042493 GO:GO:0046872
GO:GO:0006397 GO:GO:0090305 GO:GO:0004519 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
EMBL:AACQ01000196 EMBL:AACQ01000195 RefSeq:XP_711478.1
RefSeq:XP_711502.1 ProteinModelPortal:Q59P50 STRING:Q59P50
GeneID:3646887 GeneID:3646911 KEGG:cal:CaO19.12941
KEGG:cal:CaO19.5486 Uniprot:Q59P50
Length = 870
Score = 244 (91.0 bits), Expect = 1.7e-19, P = 1.7e-19
Identities = 45/90 (50%), Positives = 66/90 (73%)
Query: 1 MTHATKAIYRWLLSDYIKVSNISTEQM----------LYTESDLEKSMDKIETINFHEEK 50
MTHATKAIYRWL+ D+++V++I + LYT+ D+ KS D+IETI++H
Sbjct: 183 MTHATKAIYRWLMQDFVRVTSIGNSRSEDGGGGEGSNLYTDDDIMKSFDRIETIDYHSTM 242
Query: 51 DVNGIKFSAYNAGHVLGAAMFLIEIAGVKI 80
+++GI+F+AY+AGHVLGA M+ IEI G+K+
Sbjct: 243 EIDGIRFTAYHAGHVLGACMYFIEIGGLKV 272
>ASPGD|ASPL0000060573 [details] [associations]
symbol:AN0990 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0005634 EMBL:BN001308
GO:GO:0046872 GO:GO:0006397 GO:GO:0090305 GO:GO:0004519
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 EMBL:AACD01000015 RefSeq:XP_658594.1
ProteinModelPortal:Q5BEP0 STRING:Q5BEP0
EnsemblFungi:CADANIAT00001661 GeneID:2876766 KEGG:ani:AN0990.2
OMA:EISFAAH OrthoDB:EOG41ZJK7 Uniprot:Q5BEP0
Length = 884
Score = 214 (80.4 bits), Expect = 2.8e-16, P = 2.8e-16
Identities = 45/84 (53%), Positives = 60/84 (71%)
Query: 1 MTHATKAIYRWLLSDYIKVSNI--STEQM--LYTESDLEKSMDKIETINFHEEKDVNGIK 56
MTHATKAIY+WL+ D ++V+N S++Q LYTE D ++ IETI+F+ +N I+
Sbjct: 107 MTHATKAIYKWLIQDNVRVNNTASSSDQRTTLYTEHDHLSTLPLIETIDFNTTHTINSIR 166
Query: 57 FSAYNAGHVLGAAMFLIEIAGVKI 80
+ Y AGHVLGAAMFLI IAG+ I
Sbjct: 167 ITPYPAGHVLGAAMFLISIAGLNI 190
>GENEDB_PFALCIPARUM|PF14_0364 [details] [associations]
symbol:PF14_0364 "cleavage and polyadenylation
specifity factor protein, putative" species:5833 "Plasmodium
falciparum" [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0006379 "mRNA cleavage"
evidence=ISS] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 EMBL:AE014187 GO:GO:0005847
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718 Pfam:PF11718
SMART:SM01098 RefSeq:XP_001348538.1 ProteinModelPortal:Q8IL83
PRIDE:Q8IL83 EnsemblProtists:PF14_0364:mRNA GeneID:811946
KEGG:pfa:PF14_0364 EuPathDB:PlasmoDB:PF3D7_1438500 OMA:CLITHFH
ProtClustDB:CLSZ2457730 Uniprot:Q8IL83
Length = 876
Score = 166 (63.5 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 28/53 (52%), Positives = 42/53 (79%)
Query: 27 MLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVK 79
+LY E+D++K+MD IET+NFH+ + +KF+AY AGHV+GA MFL+EI ++
Sbjct: 166 VLYDENDIDKTMDLIETLNFHQNFEFPNVKFTAYRAGHVIGACMFLVEINNIR 218
Score = 43 (20.2 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 1 MTHATKAIYRWLLSDYIKV 19
MT ATK+I L +DY ++
Sbjct: 87 MTEATKSICYLLWNDYARI 105
Score = 31 (16.0 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 91 NVNQNNQEFR 100
N N+N+Q F+
Sbjct: 762 NDNENSQNFK 771
>UNIPROTKB|Q8IL83 [details] [associations]
symbol:PF14_0364 "Cleavage and polyadenylation specificity
factor protein, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0016787 EMBL:AE014187
GO:GO:0005847 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 RefSeq:XP_001348538.1
ProteinModelPortal:Q8IL83 PRIDE:Q8IL83
EnsemblProtists:PF14_0364:mRNA GeneID:811946 KEGG:pfa:PF14_0364
EuPathDB:PlasmoDB:PF3D7_1438500 OMA:CLITHFH ProtClustDB:CLSZ2457730
Uniprot:Q8IL83
Length = 876
Score = 166 (63.5 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 28/53 (52%), Positives = 42/53 (79%)
Query: 27 MLYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVK 79
+LY E+D++K+MD IET+NFH+ + +KF+AY AGHV+GA MFL+EI ++
Sbjct: 166 VLYDENDIDKTMDLIETLNFHQNFEFPNVKFTAYRAGHVIGACMFLVEINNIR 218
Score = 43 (20.2 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 1 MTHATKAIYRWLLSDYIKV 19
MT ATK+I L +DY ++
Sbjct: 87 MTEATKSICYLLWNDYARI 105
Score = 31 (16.0 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 91 NVNQNNQEFR 100
N N+N+Q F+
Sbjct: 762 NDNENSQNFK 771
>WB|WBGene00008642 [details] [associations]
symbol:F10B5.8 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0009792 EMBL:Z48334 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000231294 KO:K13148 OMA:MAVEYMS
GeneTree:ENSGT00700000104485 PIR:T20694 RefSeq:NP_495706.2
ProteinModelPortal:Q9U3K2 SMR:Q9U3K2 STRING:Q9U3K2 PaxDb:Q9U3K2
EnsemblMetazoa:F10B5.8 GeneID:174310 KEGG:cel:CELE_F10B5.8
UCSC:F10B5.8 CTD:174310 WormBase:F10B5.8 InParanoid:Q9U3K2
NextBio:883468 Uniprot:Q9U3K2
Length = 608
Score = 131 (51.2 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 34/77 (44%), Positives = 43/77 (55%)
Query: 1 MTHATKAIYRWLLSDYIKVS-NISTEQMLYTESDLEKSMDKIETINFHEEKDV-NGIKFS 58
MT+ TKAI LL DY KV +I E +T D++ M K+ HE V N +
Sbjct: 96 MTYPTKAICPVLLEDYRKVQCDIKGETNFFTSDDIKNCMKKVVGCALHEIIHVDNELSIR 155
Query: 59 AYNAGHVLGAAMFLIEI 75
A+ AGHVLGAAMF I +
Sbjct: 156 AFYAGHVLGAAMFEIRL 172
Score = 34 (17.0 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 75 IAGVKIARYLFLWYQVNVNQNNQEFRIG 102
+AG AR + ++ ++Q E R+G
Sbjct: 360 VAGTVGARVINGEKKIEIDQKMHEIRLG 387
>UNIPROTKB|E9PI75 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI01011963
ProteinModelPortal:E9PI75 SMR:E9PI75 Ensembl:ENST00000527719
ArrayExpress:E9PI75 Bgee:E9PI75 Uniprot:E9PI75
Length = 209
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 1 MTHATKAIYRWLLSDYIKVS-NISTEQMLYTESDLEKSMDKIETINFHEEKDVNG-IKFS 58
MTH T+AI LL DY K++ + E +T ++ M K+ ++ H+ V+ ++
Sbjct: 98 MTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIK 157
Query: 59 AYNAGHVLGAAMFLIEIAGVKI 80
AY AGHVLGAAMF I++ +
Sbjct: 158 AYYAGHVLGAAMFQIKVGSESV 179
>UNIPROTKB|E9PIG1 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00981641
ProteinModelPortal:E9PIG1 SMR:E9PIG1 Ensembl:ENST00000530031
ArrayExpress:E9PIG1 Bgee:E9PIG1 Uniprot:E9PIG1
Length = 249
Score = 132 (51.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 1 MTHATKAIYRWLLSDYIKVS-NISTEQMLYTESDLEKSMDKIETINFHEEKDVNG-IKFS 58
MTH T+AI LL DY K++ + E +T ++ M K+ ++ H+ V+ ++
Sbjct: 139 MTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIK 198
Query: 59 AYNAGHVLGAAMFLIEIAGVKI 80
AY AGHVLGAAMF I++ +
Sbjct: 199 AYYAGHVLGAAMFQIKVGSESV 220
>UNIPROTKB|E9PNS4 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00984775
ProteinModelPortal:E9PNS4 SMR:E9PNS4 Ensembl:ENST00000528879
ArrayExpress:E9PNS4 Bgee:E9PNS4 Uniprot:E9PNS4
Length = 278
Score = 132 (51.5 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 1 MTHATKAIYRWLLSDYIKVS-NISTEQMLYTESDLEKSMDKIETINFHEEKDVNG-IKFS 58
MTH T+AI LL DY K++ + E +T ++ M K+ ++ H+ V+ ++
Sbjct: 92 MTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIK 151
Query: 59 AYNAGHVLGAAMFLIEIAGVKI 80
AY AGHVLGAAMF I++ +
Sbjct: 152 AYYAGHVLGAAMFQIKVGSESV 173
>UNIPROTKB|F1NV30 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9031
"Gallus gallus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS GeneTree:ENSGT00700000104485
IPI:IPI00571913 EMBL:AADN02040858 Ensembl:ENSGALT00000002586
Uniprot:F1NV30
Length = 600
Score = 134 (52.2 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 1 MTHATKAIYRWLLSDYIKVS-NISTEQMLYTESDLEKSMDKIETINFHEEKDVNG-IKFS 58
MTH TKAI LL DY K++ + E +T ++ M K+ ++ H+ V+ ++
Sbjct: 92 MTHPTKAICPILLEDYRKITVDKKGETNFFTSQMIKDCMKKVVAVHLHQTVQVDEELEIK 151
Query: 59 AYNAGHVLGAAMFLIEI 75
AY AGHVLGAAMF I++
Sbjct: 152 AYYAGHVLGAAMFQIKV 168
>UNIPROTKB|Q5ZIH0 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9031
"Gallus gallus" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000231294 KO:K13148 GO:GO:0032039 GO:GO:0016180
HOVERGEN:HBG080215 OrthoDB:EOG4GXFMB EMBL:AJ720814 IPI:IPI00571913
RefSeq:NP_001012854.1 UniGene:Gga.13403 ProteinModelPortal:Q5ZIH0
STRING:Q5ZIH0 GeneID:419418 KEGG:gga:419418 CTD:54973
InParanoid:Q5ZIH0 NextBio:20822477 Uniprot:Q5ZIH0
Length = 600
Score = 134 (52.2 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 1 MTHATKAIYRWLLSDYIKVS-NISTEQMLYTESDLEKSMDKIETINFHEEKDVNG-IKFS 58
MTH TKAI LL DY K++ + E +T ++ M K+ ++ H+ V+ ++
Sbjct: 92 MTHPTKAICPILLEDYRKITVDKKGETNFFTSQMIKDCMKKVVAVHLHQTVQVDEELEIK 151
Query: 59 AYNAGHVLGAAMFLIEI 75
AY AGHVLGAAMF I++
Sbjct: 152 AYYAGHVLGAAMFQIKV 168
>UNIPROTKB|E2QY53 [details] [associations]
symbol:CPSF3L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:AAEX03003844 RefSeq:XP_003639102.1 Ensembl:ENSCAFT00000030626
GeneID:100855777 KEGG:cfa:100855777 Uniprot:E2QY53
Length = 600
Score = 132 (51.5 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 1 MTHATKAIYRWLLSDYIKVS-NISTEQMLYTESDLEKSMDKIETINFHEEKDVNG-IKFS 58
MTH T+AI LL DY K++ + E +T ++ M K+ ++ H+ V+ ++
Sbjct: 92 MTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIK 151
Query: 59 AYNAGHVLGAAMFLIEIAGVKI 80
AY AGHVLGAAMF I++ +
Sbjct: 152 AYYAGHVLGAAMFQIKVGSESV 173
>UNIPROTKB|Q5TA45 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0005634 GO:GO:0005737 GO:GO:0016787
EMBL:AL139287 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 KO:K13148 HOVERGEN:HBG080215
OrthoDB:EOG4GXFMB CTD:54973 EMBL:AL136813 EMBL:AK000549
EMBL:AK021939 EMBL:AK023356 EMBL:AK297350 EMBL:CR533557
EMBL:BC000675 EMBL:BC007978 EMBL:BC013904 EMBL:BK005728
EMBL:BK005673 IPI:IPI00063404 IPI:IPI00306882 IPI:IPI00514973
RefSeq:NP_001243392.1 RefSeq:NP_060341.2 UniGene:Hs.6449
ProteinModelPortal:Q5TA45 SMR:Q5TA45 IntAct:Q5TA45
MINT:MINT-1482228 STRING:Q5TA45 PhosphoSite:Q5TA45 DMDM:118572557
PaxDb:Q5TA45 PRIDE:Q5TA45 DNASU:54973 Ensembl:ENST00000419704
Ensembl:ENST00000435064 Ensembl:ENST00000450926
Ensembl:ENST00000545578 GeneID:54973 KEGG:hsa:54973 UCSC:uc001aee.1
UCSC:uc001aeh.1 UCSC:uc009vjz.1 GeneCards:GC01M001236
HGNC:HGNC:26052 HPA:HPA028379 HPA:HPA029025 MIM:611354
neXtProt:NX_Q5TA45 PharmGKB:PA142672080 InParanoid:Q5TA45
PhylomeDB:Q5TA45 ChiTaRS:CPSF3L GenomeRNAi:54973 NextBio:58222
ArrayExpress:Q5TA45 Bgee:Q5TA45 Genevestigator:Q5TA45
GermOnline:ENSG00000127054 Uniprot:Q5TA45
Length = 600
Score = 132 (51.5 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 1 MTHATKAIYRWLLSDYIKVS-NISTEQMLYTESDLEKSMDKIETINFHEEKDVNG-IKFS 58
MTH T+AI LL DY K++ + E +T ++ M K+ ++ H+ V+ ++
Sbjct: 92 MTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIK 151
Query: 59 AYNAGHVLGAAMFLIEIAGVKI 80
AY AGHVLGAAMF I++ +
Sbjct: 152 AYYAGHVLGAAMFQIKVGSESV 173
>MGI|MGI:1919207 [details] [associations]
symbol:Cpsf3l "cleavage and polyadenylation specific factor
3-like" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 MGI:MGI:1919207 GO:GO:0005737 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000231294 KO:K13148 OMA:MAVEYMS
GeneTree:ENSGT00700000104485 GO:GO:0032039 GO:GO:0016180
HOVERGEN:HBG080215 OrthoDB:EOG4GXFMB CTD:54973 EMBL:AK010425
EMBL:AK090206 EMBL:AK150436 EMBL:AK152740 EMBL:AK167607
EMBL:AK172533 EMBL:BC008240 EMBL:BC011155 IPI:IPI00467084
RefSeq:NP_082296.1 UniGene:Mm.259270 UniGene:Mm.475640
ProteinModelPortal:Q9CWS4 SMR:Q9CWS4 STRING:Q9CWS4
PhosphoSite:Q9CWS4 PaxDb:Q9CWS4 PRIDE:Q9CWS4
Ensembl:ENSMUST00000030901 GeneID:71957 KEGG:mmu:71957
InParanoid:Q9CWS4 NextBio:335052 Bgee:Q9CWS4 Genevestigator:Q9CWS4
GermOnline:ENSMUSG00000029034 Uniprot:Q9CWS4
Length = 600
Score = 132 (51.5 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 1 MTHATKAIYRWLLSDYIKVS-NISTEQMLYTESDLEKSMDKIETINFHEEKDVNG-IKFS 58
MTH T+AI LL DY K++ + E +T ++ M K+ ++ H+ V+ ++
Sbjct: 92 MTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIK 151
Query: 59 AYNAGHVLGAAMFLIEIAGVKI 80
AY AGHVLGAAMF I++ +
Sbjct: 152 AYYAGHVLGAAMFQIKVGSESV 173
>RGD|1306841 [details] [associations]
symbol:Cpsf3l "cleavage and polyadenylation specific factor
3-like" species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 RGD:1306841 GO:GO:0005634 GO:GO:0005737
GO:GO:0016787 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 HOGENOM:HOG000231294 KO:K13148
OMA:MAVEYMS GeneTree:ENSGT00700000104485 HOVERGEN:HBG080215
OrthoDB:EOG4GXFMB CTD:54973 EMBL:BC105303 IPI:IPI00365477
RefSeq:NP_001029064.1 UniGene:Rn.98615 ProteinModelPortal:Q3MHC2
STRING:Q3MHC2 Ensembl:ENSRNOT00000026725 GeneID:298688
KEGG:rno:298688 InParanoid:Q3MHC2 NextBio:644186
Genevestigator:Q3MHC2 GermOnline:ENSRNOG00000019712 Uniprot:Q3MHC2
Length = 600
Score = 132 (51.5 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 1 MTHATKAIYRWLLSDYIKVS-NISTEQMLYTESDLEKSMDKIETINFHEEKDVNG-IKFS 58
MTH T+AI LL DY K++ + E +T ++ M K+ ++ H+ V+ ++
Sbjct: 92 MTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIK 151
Query: 59 AYNAGHVLGAAMFLIEIAGVKI 80
AY AGHVLGAAMF I++ +
Sbjct: 152 AYYAGHVLGAAMFQIKVGSESV 173
>UNIPROTKB|G3V1S5 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 EMBL:AL139287 EMBL:CH471183 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 KO:K13148 OMA:MAVEYMS
CTD:54973 UniGene:Hs.6449 GeneID:54973 KEGG:hsa:54973
HGNC:HGNC:26052 ChiTaRS:CPSF3L GenomeRNAi:54973
RefSeq:NP_001243385.1 ProteinModelPortal:G3V1S5 SMR:G3V1S5
Ensembl:ENST00000540437 ArrayExpress:G3V1S5 Bgee:G3V1S5
Uniprot:G3V1S5
Length = 606
Score = 132 (51.5 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 1 MTHATKAIYRWLLSDYIKVS-NISTEQMLYTESDLEKSMDKIETINFHEEKDVNG-IKFS 58
MTH T+AI LL DY K++ + E +T ++ M K+ ++ H+ V+ ++
Sbjct: 98 MTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIK 157
Query: 59 AYNAGHVLGAAMFLIEIAGVKI 80
AY AGHVLGAAMF I++ +
Sbjct: 158 AYYAGHVLGAAMFQIKVGSESV 179
>UNIPROTKB|E1B7Q9 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9913
"Bos taurus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:DAAA02043243 IPI:IPI00971575 Ensembl:ENSBTAT00000010020
Uniprot:E1B7Q9
Length = 598
Score = 129 (50.5 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 1 MTHATKAIYRWLLSDYIKVSNISTEQMLYTESDLEKSMDKIETINFHEEKDVNG-IKFSA 59
MT T+AI LL DY K++ E +T ++ M K+ ++ H+ V+ ++ A
Sbjct: 92 MTQPTQAICPILLEDYRKIAVDKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKA 151
Query: 60 YNAGHVLGAAMFLIEIAGVKI 80
Y AGHVLGAAMF I++ +
Sbjct: 152 YYAGHVLGAAMFQIKVGSESV 172
>DICTYBASE|DDB_G0278189 [details] [associations]
symbol:ints11 "integrator complex subunit 11"
species:44689 "Dictyostelium discoideum" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0278189 Pfam:PF07521 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 RefSeq:XP_642189.1
ProteinModelPortal:Q54YL3 PRIDE:Q54YL3 EnsemblProtists:DDB0234100
GeneID:8621396 KEGG:ddi:DDB_G0278189 OMA:RTIANET
ProtClustDB:CLSZ2729107 Uniprot:Q54YL3
Length = 744
Score = 117 (46.2 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 1 MTHATKAIYRWLLSDYIKVS-NISTEQMLYTESDLEKSMDKIETINFHEEKDVNG-IKFS 58
MT TKAI LL DY K++ E +T ++ M K+ +N H+ V+ +
Sbjct: 91 MTLPTKAICPILLEDYRKITVEKKGETNFFTAQMIKDCMKKVIPVNLHQTIKVDEELSIK 150
Query: 59 AYNAGHVLGAAMFLIEI 75
AY AGHVLGAAMF ++
Sbjct: 151 AYYAGHVLGAAMFYAKV 167
Score = 33 (16.7 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 5/15 (33%), Positives = 11/15 (73%)
Query: 86 LWYQVNVNQNNQEFR 100
L+Y++ +N NQ+ +
Sbjct: 277 LYYKLFINWTNQKIK 291
>FB|FBgn0039691 [details] [associations]
symbol:IntS11 "Integrator 11" species:7227 "Drosophila
melanogaster" [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0034472 "snRNA
3'-end processing" evidence=IDA] [GO:0016180 "snRNA processing"
evidence=ISS] [GO:0032039 "integrator complex" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR001279
SMART:SM00849 Pfam:PF07521 EMBL:AE014297 GO:GO:0022008
GO:GO:0006378 GO:GO:0016787 GO:GO:0005847 GO:GO:0006379
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
GO:GO:0034472 EMBL:AY061097 RefSeq:NP_651721.1 UniGene:Dm.3722
SMR:Q9VAH9 STRING:Q9VAH9 EnsemblMetazoa:FBtr0085476 GeneID:43506
KEGG:dme:Dmel_CG1972 UCSC:CG1972-RA CTD:43506 FlyBase:FBgn0039691
InParanoid:Q9VAH9 OrthoDB:EOG47D7X3 GenomeRNAi:43506 NextBio:834295
Uniprot:Q9VAH9
Length = 597
Score = 124 (48.7 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 31/82 (37%), Positives = 44/82 (53%)
Query: 1 MTHATKAIYRWLLSDYIKVS-NISTEQMLYTESDLEKSMDKIETINFHEEKDVN-GIKFS 58
MTH TKAI LL D KV+ E +T ++ M K+ + H+ V+ ++
Sbjct: 92 MTHPTKAIAPILLEDMRKVAVERKGESNFFTTQMIKDCMKKVIPVTLHQSMMVDTDLEIK 151
Query: 59 AYNAGHVLGAAMFLIEIAGVKI 80
AY AGHVLGAAMF I++ +
Sbjct: 152 AYYAGHVLGAAMFWIKVGSQSV 173
>UNIPROTKB|Q2YDM2 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9913
"Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0005634 GO:GO:0005737 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000231294 EMBL:BC110155 IPI:IPI00725178
UniGene:Bt.4894 ProteinModelPortal:Q2YDM2 STRING:Q2YDM2
PRIDE:Q2YDM2 HOVERGEN:HBG080215 InParanoid:Q2YDM2 OrthoDB:EOG4GXFMB
Uniprot:Q2YDM2
Length = 599
Score = 124 (48.7 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 1 MTHATKAIYRWLLSDYIKVS-NISTEQMLYTESDLEKSMDKIETINFHEEKDVNG-IKFS 58
MT T+AI LL DY K++ + E +T ++ M K+ ++ H+ V+ ++
Sbjct: 92 MTQPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIK 151
Query: 59 AYNAGHVLGAAMFLIEIAGVKI 80
AY AGHVLGAAMF I++ +
Sbjct: 152 AYYAGHVLGAAMFQIKVGSESV 173
>ZFIN|ZDB-GENE-050522-13 [details] [associations]
symbol:cpsf3l "cleavage and polyadenylation specific
factor 3-like" species:7955 "Danio rerio" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
ZFIN:ZDB-GENE-050522-13 GO:GO:0016787 GO:GO:0043484
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
OMA:MAVEYMS GeneTree:ENSGT00700000104485 EMBL:CABZ01054885
EMBL:CR846089 IPI:IPI00865509 Ensembl:ENSDART00000102902
Uniprot:E7EXW1
Length = 601
Score = 122 (48.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 1 MTHATKAIYRWLLSDYIKVS-NISTEQMLYTESDLEKSMDKIETINFHEEKDVNG-IKFS 58
MTH TKAI LL D+ K++ + E +T ++ M K+ +N H+ V+ ++
Sbjct: 92 MTHPTKAICPILLEDFRKITVDKKGETNFFTSQMIKDCMKKVVPLNLHQTVQVDDELEIK 151
Query: 59 AYNAGHVLGAAM 70
AY AGHVLGAAM
Sbjct: 152 AYYAGHVLGAAM 163
>UNIPROTKB|F1RJE8 [details] [associations]
symbol:CPSF3L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:FP102596 RefSeq:XP_003127541.3 Ensembl:ENSSSCT00000003708
GeneID:100523908 KEGG:ssc:100523908 Uniprot:F1RJE8
Length = 599
Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 1 MTHATKAIYRWLLSDYIKVS-NISTEQMLYTESDLEKSMDKIETINFHEEKDVNG-IKFS 58
MT T+AI LL DY K++ + E +T ++ M K ++ H+ V+ ++
Sbjct: 92 MTQPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKAVAVHLHQTVQVDDELEIK 151
Query: 59 AYNAGHVLGAAMFLIEIAGVKI 80
AY AGHVLGAAMF I++ +
Sbjct: 152 AYYAGHVLGAAMFQIKVGSESV 173
>TAIR|locus:2065368 [details] [associations]
symbol:CPSF73-II "AT2G01730" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0010197 "polar nucleus
fusion" evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006397 GO:GO:0090305 EMBL:AC006069
GO:GO:0004518 GO:GO:0010197 eggNOG:COG1236 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 EMBL:AY168923
EMBL:AK221561 IPI:IPI00536069 PIR:D84428 RefSeq:NP_178282.2
UniGene:At.42473 ProteinModelPortal:Q8GUU3 SMR:Q8GUU3 IntAct:Q8GUU3
STRING:Q8GUU3 PaxDb:Q8GUU3 PRIDE:Q8GUU3 EnsemblPlants:AT2G01730.1
GeneID:814702 KEGG:ath:AT2G01730 TAIR:At2g01730
HOGENOM:HOG000231294 InParanoid:Q56XW2 KO:K13148 OMA:MAVEYMS
Genevestigator:Q8GUU3 Uniprot:Q8GUU3
Length = 613
Score = 99 (39.9 bits), Expect = 0.00034, P = 0.00034
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 1 MTHATKAIYRWLLSDYIKVS-NISTEQMLYTESDLEKSMDKIETINFHEEKDVN-GIKFS 58
M++ TKA+ +L DY +V + E+ L+T + + M K+ I+ + V+ ++
Sbjct: 91 MSYPTKALSPLMLEDYRRVMVDRRGEEELFTTTHIANCMKKVIAIDLKQTIQVDEDLQIR 150
Query: 59 AYNAGHVLGAAMFLIEIAGVKI 80
AY AGHVLGA M ++ I
Sbjct: 151 AYYAGHVLGAVMVYAKMGDAAI 172
>DICTYBASE|DDB_G0282473 [details] [associations]
symbol:ints9 "integrator complex subunit 9"
species:44689 "Dictyostelium discoideum" [GO:0032039 "integrator
complex" evidence=IEA] [GO:0016180 "snRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR027074 dictyBase:DDB_G0282473
GO:GO:0005634 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
eggNOG:COG1236 InterPro:IPR022712 Pfam:PF10996 SMART:SM01027
KO:K13146 PANTHER:PTHR11203:SF2 RefSeq:XP_640069.1
ProteinModelPortal:Q54SH0 EnsemblProtists:DDB0234099 GeneID:8623598
KEGG:ddi:DDB_G0282473 OMA:DDFSTID ProtClustDB:CLSZ2729002
Uniprot:Q54SH0
Length = 712
Score = 89 (36.4 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 28 LYTESDLEKSMDKIETINFHEEKDVNGIKFSAYNAGHVLGAAMFLIEIAGVKIARYL 84
LY + D+EKS +KI++I F+E G + ++G+ LG+A ++IE G + Y+
Sbjct: 217 LYKKIDIEKSFEKIQSIRFNESIKHYGFECIPSSSGYGLGSANWVIESKGFERVVYI 273
Score = 32 (16.3 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 94 QNNQEFRIG 102
QNNQ F G
Sbjct: 537 QNNQNFESG 545
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.133 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 103 103 0.00091 102 3 11 22 0.39 30
29 0.49 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 41
No. of states in DFA: 516 (55 KB)
Total size of DFA: 112 KB (2077 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.42u 0.08s 11.50t Elapsed: 00:00:04
Total cpu time: 11.42u 0.08s 11.50t Elapsed: 00:00:04
Start: Thu Aug 15 17:04:58 2013 End: Thu Aug 15 17:05:02 2013