Query psy8352
Match_columns 69
No_of_seqs 47 out of 49
Neff 2.8
Searched_HMMs 29240
Date Sat Aug 17 01:31:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dad_A FH1/FH2 domain-containi 99.9 6.1E-27 2.1E-31 177.4 -1.9 68 1-68 181-248 (339)
2 3eg5_B Protein diaphanous homo 98.7 1.1E-09 3.8E-14 81.3 -1.0 67 1-67 141-209 (383)
3 2f31_A Diaphanous protein homo 97.5 7E-06 2.4E-10 56.4 -1.6 66 2-67 76-143 (233)
4 2bnx_A Diaphanous protein homo 97.2 2.6E-05 8.8E-10 57.8 -1.5 66 2-67 80-147 (386)
5 4hxt_A De novo protein OR329; 32.3 2.3 7.9E-05 26.1 -2.8 42 20-61 168-209 (252)
6 2qlc_A DNA repair protein RADC 29.6 15 0.0005 23.6 0.5 39 7-45 28-66 (126)
7 3u3g_D Ribonuclease H, RNAse H 27.6 27 0.00092 20.3 1.4 10 5-14 2-11 (140)
8 1y14_A B32, RPB4, DNA-directed 23.9 11 0.00039 26.5 -0.8 27 18-44 4-30 (187)
9 3hou_D DNA-directed RNA polyme 22.6 12 0.00042 27.2 -0.9 27 18-44 38-64 (221)
10 1hyw_A GPW, head-TO-tail joini 20.4 70 0.0024 18.9 2.3 19 50-68 33-51 (68)
No 1
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=99.91 E-value=6.1e-27 Score=177.36 Aligned_cols=68 Identities=60% Similarity=0.989 Sum_probs=66.4
Q ss_pred CcccceeeEEEecccccccCchhhhhHHHHhhcchhHHHHHHHhhhhheeeeeccchHHHHHHHHhhh
Q psy8352 1 MRTLGQVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAIL 68 (69)
Q Consensus 1 LRAlgqiml~VDGMngvi~h~~tvqwLY~L~~S~frlVvKtaLkLLLVfveY~EsN~~lli~Av~~v~ 68 (69)
||||+|+|.|||||||+++|+++|+|+|++++|++|+|+|+||+||+|||||+|+|++++++|+++++
T Consensus 181 L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~ 248 (339)
T 3dad_A 181 LRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVA 248 (339)
T ss_dssp HHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999775
No 2
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=98.70 E-value=1.1e-09 Score=81.26 Aligned_cols=67 Identities=15% Similarity=0.140 Sum_probs=62.8
Q ss_pred CcccceeeEEEecccccccCchhhhhHHHHhhcchhHHHHHHHhhhhheeeeec-cc-hHHHHHHHHhh
Q psy8352 1 MRTLGQVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVE-SN-CFLLIQAVHAI 67 (69)
Q Consensus 1 LRAlgqiml~VDGMngvi~h~~tvqwLY~L~~S~frlVvKtaLkLLLVfveY~E-sN-~~lli~Av~~v 67 (69)
+|.|.++|-+.+|++.+++|+++++||+....|+...+.|+|+|||.++..|++ .| +..+++|++..
T Consensus 141 l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~ 209 (383)
T 3eg5_B 141 IRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTER 209 (383)
T ss_dssp HHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHH
Confidence 367889999999999999999999999999999999999999999999999997 77 99999999865
No 3
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=97.49 E-value=7e-06 Score=56.44 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=59.3
Q ss_pred cccceeeEEEecccccccCchhhhhHHHHhhcchhHHHHHHHhhhhheeeeec-cc-hHHHHHHHHhh
Q psy8352 2 RTLGQVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVE-SN-CFLLIQAVHAI 67 (69)
Q Consensus 2 RAlgqiml~VDGMngvi~h~~tvqwLY~L~~S~frlVvKtaLkLLLVfveY~E-sN-~~lli~Av~~v 67 (69)
|.|..+|-+-.|++.+++|++.+.+|.....|+...+.|.|+++|-++..|++ .+ +..+++|++..
T Consensus 76 ~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~ 143 (233)
T 2f31_A 76 RCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTER 143 (233)
T ss_dssp HHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHH
T ss_pred HHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Confidence 56778888999999999999999999999999999999999999988888887 47 99999998753
No 4
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=97.21 E-value=2.6e-05 Score=57.80 Aligned_cols=66 Identities=15% Similarity=0.124 Sum_probs=59.2
Q ss_pred cccceeeEEEecccccccCchhhhhHHHHhhcchhHHHHHHHhhhhheeeeeccc--hHHHHHHHHhh
Q psy8352 2 RTLGQVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESN--CFLLIQAVHAI 67 (69)
Q Consensus 2 RAlgqiml~VDGMngvi~h~~tvqwLY~L~~S~frlVvKtaLkLLLVfveY~EsN--~~lli~Av~~v 67 (69)
|.|..+|=+-.|++.+++|++.+.+|.....|+...+.+.++++|.++..|++.| +..+++|+...
T Consensus 80 ~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~ 147 (386)
T 2bnx_A 80 RCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTER 147 (386)
T ss_dssp HHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 5677888899999999999999999999999999999999999998888888854 89999998753
No 5
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=32.27 E-value=2.3 Score=26.09 Aligned_cols=42 Identities=21% Similarity=0.064 Sum_probs=31.1
Q ss_pred CchhhhhHHHHhhcchhHHHHHHHhhhhheeeeeccchHHHH
Q psy8352 20 HPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLI 61 (69)
Q Consensus 20 h~~tvqwLY~L~~S~frlVvKtaLkLLLVfveY~EsN~~lli 61 (69)
....+..|..+..++...+.+.|+..|--+...++.+...++
T Consensus 168 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 209 (252)
T 4hxt_A 168 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIV 209 (252)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHH
T ss_pred HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 356788888888888888888888888777766666554443
No 6
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=29.58 E-value=15 Score=23.64 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=29.2
Q ss_pred eeEEEecccccccCchhhhhHHHHhhcchhHHHHHHHhh
Q psy8352 7 VMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKL 45 (69)
Q Consensus 7 iml~VDGMngvi~h~~tvqwLY~L~~S~frlVvKtaLkL 45 (69)
..+|.|.-|.+|+.....+.--+-+.-.-|-|+|.||+.
T Consensus 28 ~vl~Ld~~n~li~~~~l~~Gt~~~~~v~pRei~~~Al~~ 66 (126)
T 2qlc_A 28 FVLFLSTKNQILRHETITIGTLTASLIHPREIFKAAIRE 66 (126)
T ss_dssp EEEEECTTCBEEEEEEEEESSCCGGGCCHHHHHHHHHHT
T ss_pred EEEEEcCCCCEEEEEEecCCCCCcEeecHHHHHHHHHHc
Confidence 478899999999888776554333444668999999975
No 7
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=27.64 E-value=27 Score=20.32 Aligned_cols=10 Identities=30% Similarity=0.863 Sum_probs=7.5
Q ss_pred ceeeEEEecc
Q psy8352 5 GQVMLYVDGM 14 (69)
Q Consensus 5 gqiml~VDGM 14 (69)
..+.+|+||=
T Consensus 2 ~~~~iy~DGs 11 (140)
T 3u3g_D 2 NKIIIYTDGG 11 (140)
T ss_dssp CEEEEEEEEE
T ss_pred ceEEEEEecC
Confidence 4678899974
No 8
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=23.92 E-value=11 Score=26.47 Aligned_cols=27 Identities=41% Similarity=0.412 Sum_probs=17.2
Q ss_pred ccCchhhhhHHHHhhcchhHHHHHHHh
Q psy8352 18 MDHPPTVQWLYVLVASKFRLVIKTALK 44 (69)
Q Consensus 18 i~h~~tvqwLY~L~~S~frlVvKtaLk 44 (69)
|+|-.-.+-+-+|..|.-|+|+|.||+
T Consensus 4 ~~~~g~~~~~~al~lsearl~i~~~l~ 30 (187)
T 1y14_A 4 INHQGEEEELIALNLSEARLVIKEALV 30 (187)
T ss_dssp --------CEEEECHHHHHHHHHHHHH
T ss_pred cccccchhhhhHhhHHHHHHHHHHHHH
Confidence 445555677778999999999999986
No 9
>3hou_D DNA-directed RNA polymerase II subunit RPB4; RNA polymerase II, metal-binding, transcription bubble; HET: BRU; 3.20A {Saccharomyces cerevisiae} PDB: 1nt9_D 1y1w_D 1y1y_D 1y77_D* 2b63_D* 2b8k_D 2ja5_D* 2ja6_D* 2ja7_D* 2ja8_D* 2r7z_D 2r92_D 2r93_D 1y1v_D* 3fki_D 3h3v_E 2vum_D* 3hov_D* 3how_D* 3hox_D* ...
Probab=22.56 E-value=12 Score=27.19 Aligned_cols=27 Identities=41% Similarity=0.412 Sum_probs=20.7
Q ss_pred ccCchhhhhHHHHhhcchhHHHHHHHh
Q psy8352 18 MDHPPTVQWLYVLVASKFRLVIKTALK 44 (69)
Q Consensus 18 i~h~~tvqwLY~L~~S~frlVvKtaLk 44 (69)
|+|..--+-|-.|..|.-||++|.||+
T Consensus 38 ~~~~g~~~~lialnlsearl~i~~al~ 64 (221)
T 3hou_D 38 INHQGEEEELIALNLSEARLVIKEALV 64 (221)
T ss_dssp ECTTSCEEECCBCCTTHHHHHHHHHHH
T ss_pred cccCCchhHhHhhhhHHHHHHHHHHHH
Confidence 345444556677889999999999996
No 10
>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one two-stranded beta-sheet, viral protein; NMR {Enterobacteria phage lambda} SCOP: d.186.1.1 PDB: 2l6q_A 2l6r_A
Probab=20.44 E-value=70 Score=18.90 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=16.1
Q ss_pred eeeeccchHHHHHHHHhhh
Q psy8352 50 VEYVESNCFLLIQAVHAIL 68 (69)
Q Consensus 50 veY~EsN~~lli~Av~~v~ 68 (69)
|||+..|..-|.+.|+.+.
T Consensus 33 V~Y~~asi~~L~~~I~~le 51 (68)
T 1hyw_A 33 VEFTATSVSDLKKYIAELE 51 (68)
T ss_dssp EEECTTTHHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHH
Confidence 8999999999988887653
Done!