RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8352
         (69 letters)



>gnl|CDD|220454 pfam09878, DUF2105, Predicted membrane protein (DUF2105).  This
           domain, found in various hypothetical archaeal proteins,
           has no known function.
          Length = 210

 Score = 24.2 bits (53), Expect = 6.9
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 9   LYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLI 48
           L++ G       P    WL  L+ +   ++IK   KL LI
Sbjct: 168 LWILGFIIFFLFPQ--AWLLALMLAGCGILIKVGSKLGLI 205


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.332    0.143    0.427 

Gapped
Lambda     K      H
   0.267   0.0709    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,423,504
Number of extensions: 253185
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 4
Length of query: 69
Length of database: 10,937,602
Length adjustment: 39
Effective length of query: 30
Effective length of database: 9,207,796
Effective search space: 276233880
Effective search space used: 276233880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 53 (24.2 bits)