RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8352
         (69 letters)



>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding
           domain, ubiquitin-superfold, armadillo repeats,
           actin-binding, coiled coil; 2.30A {Homo sapiens}
          Length = 339

 Score = 72.5 bits (177), Expect = 2e-17
 Identities = 41/66 (62%), Positives = 53/66 (80%)

Query: 1   MRTLGQVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLL 60
           +R LGQ+ML+VDGM G++ H  T+QWLY L AS  RLV+KTALKLLL+FVEY E+N  L 
Sbjct: 181 LRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLF 240

Query: 61  IQAVHA 66
           I+AV++
Sbjct: 241 IRAVNS 246


>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate,
           metal BI protein; 1.75A {Bacillus subtilis} SCOP:
           b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A
           2uya_A 3s0m_A
          Length = 385

 Score = 25.2 bits (54), Expect = 1.8
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 7   VMLYVDGMTGIMDHPPTVQWLYVL 30
           V +    M  +  HP T +W Y +
Sbjct: 262 VTVEPGAMRELHWHPNTHEWQYYI 285


>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
           hypertherm protein, replication; HET: DNA BOG; 1.50A
           {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
           1d2m_A*
          Length = 664

 Score = 23.7 bits (52), Expect = 5.8
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 5   GQVMLYVDGMTGIMD 19
           G+V LY D ++  M 
Sbjct: 541 GEVWLYADRVSEAMQ 555


>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex,
           hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus
           subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A*
           1d9x_A 2d7d_B* 2nmv_B*
          Length = 661

 Score = 23.3 bits (51), Expect = 7.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query: 5   GQVMLYVDGMTGIMD 19
           G+V++Y D +T  M+
Sbjct: 547 GRVIMYADKITKSME 561


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.332    0.143    0.427 

Gapped
Lambda     K      H
   0.267   0.0486    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,019,793
Number of extensions: 45301
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 5
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 51 (24.0 bits)