BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8357
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DAD|A Chain A, Crystal Structure Of The N-Terminal Regulatory Domains Of
The Formin Fhod1
pdb|3DAD|B Chain B, Crystal Structure Of The N-Terminal Regulatory Domains Of
The Formin Fhod1
Length = 339
Score = 164 bits (415), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 74/132 (56%), Positives = 105/132 (79%)
Query: 145 LVALGQVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLL 204
L ALGQ+ML+VDGM G++ H T+QWLY L AS RLV+KTALKLLL+FVEY E+N L
Sbjct: 181 LRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLF 240
Query: 205 IQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDA 264
I+AV++V ++ G PPW+N++ +L +++ D ELL+Y ++L+NKTL +PDQDS+YD DA
Sbjct: 241 IRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDA 300
Query: 265 LEEQGIAAVIRR 276
LE+QG+ A+++R
Sbjct: 301 LEQQGMEALVQR 312
Score = 153 bits (387), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 98/124 (79%)
Query: 1 MLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAV 60
ML+VDGM G++ H T+QWLY L AS RLV+KTALKLLL+FVEY E+N L I+AV++V
Sbjct: 188 MLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSV 247
Query: 61 DNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIA 120
++ G PPW+N++ +L +++ D ELL+Y ++L+NKTL +PDQDS+YD DALE+QG+
Sbjct: 248 ASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGME 307
Query: 121 AVIR 124
A+++
Sbjct: 308 ALVQ 311
>pdb|2J2C|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii
(Nt5c2, Cn-Ii)
pdb|2JC9|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Adenosine
pdb|4H4B|A Chain A, Human Cytosolic 5'-nucleotidase Ii In Complex With
Anthraquinone-2,6- Disulfonic Acid
Length = 555
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 128 QHGIKYTTSSTDLPTEPLVALGQVMLYV-DGMTG-IMDHPPTVQWLYVLVASKFRLVIKT 185
QHGI Y+ S+D + L A G+ +LY+ D + G I+ W LV + +
Sbjct: 341 QHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHV 400
Query: 186 ALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMR 225
+F E + FL H +SN P S+I R
Sbjct: 401 WTDKSSLFEELQSLDIFLAELYKHLDSSSNERPDISSIQR 440
>pdb|2XJE|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Uridine
5'-Monophosphate And Adenosine Triphosphate
Length = 555
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 128 QHGIKYTTSSTDLPTEPLVALGQVMLYV-DGMTG-IMDHPPTVQWLYVLVASKFRLVIKT 185
QHGI Y+ S+D + L A G+ +LY+ D + G I+ W LV + +
Sbjct: 341 QHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHV 400
Query: 186 ALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMR 225
+F E + FL H +SN P S+I R
Sbjct: 401 WTDKSSLFEELQSLDIFLAELYKHLDSSSNERPDISSIQR 440
>pdb|2XCV|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inosine Monophosphate
And 2,3-Bisphosphoglycerate
pdb|2XCW|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Inosine Monophosphate
And Atp
pdb|2XCX|A Chain A, Crystal Structure Of The Apoform Of The D52n Variant Of
Cytosolic 5'- Nucleotidase Ii
pdb|2XJB|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Deoxyguanosine
Monophosphate And Deoxyadenosine Triphosphate
pdb|2XJC|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Guanosine
Monophosphate And Diadenosine Tetraphosphate
pdb|2XJD|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inorganic Phosphate And
Deoxyadenosine Triphosphate
Length = 554
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 128 QHGIKYTTSSTDLPTEPLVALGQVMLYV-DGMTG-IMDHPPTVQWLYVLVASKFRLVIKT 185
QHGI Y+ S+D + L A G+ +LY+ D + G I+ W LV + +
Sbjct: 340 QHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHV 399
Query: 186 ALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMR 225
+F E + FL H +SN P S+I R
Sbjct: 400 WTDKSSLFEELQSLDIFLAELYKHLDSSSNERPDISSIQR 439
>pdb|2JCM|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Beryllium Trifluoride
pdb|2XJF|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii With A Covalently Modified Asn52
Length = 555
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 128 QHGIKYTTSSTDLPTEPLVALGQVMLYV-DGMTG-IMDHPPTVQWLYVLVASKFRLVIKT 185
QHGI Y+ S+D + L A G+ +LY+ D + G I+ W LV + +
Sbjct: 341 QHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHV 400
Query: 186 ALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMR 225
+F E + FL H +SN P S+I R
Sbjct: 401 WTDKSSLFEELQSLDIFLAELYKHLDSSSNERPDISSIQR 440
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,628,672
Number of Sequences: 62578
Number of extensions: 285259
Number of successful extensions: 643
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 641
Number of HSP's gapped (non-prelim): 8
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)