Query psy8357
Match_columns 276
No_of_seqs 101 out of 116
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 16:37:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06367 Drf_FH3: Diaphanous F 97.7 0.00012 2.5E-09 63.1 6.8 76 200-275 2-78 (197)
2 KOG1925|consensus 97.5 4.3E-05 9.3E-10 77.7 2.6 54 95-159 1-54 (817)
3 PF06367 Drf_FH3: Diaphanous F 97.2 0.0016 3.4E-08 56.1 7.5 97 50-159 3-100 (197)
4 PF11841 DUF3361: Domain of un 97.1 0.0029 6.3E-08 55.6 8.2 143 112-274 6-154 (160)
5 PF06371 Drf_GBD: Diaphanous G 96.0 0.0024 5.1E-08 53.7 1.0 83 112-194 102-186 (187)
6 KOG1924|consensus 90.8 0.97 2.1E-05 49.0 8.2 249 14-275 70-342 (1102)
7 PF10508 Proteasom_PSMB: Prote 85.5 13 0.00027 37.5 11.9 225 10-254 114-370 (503)
8 PF10508 Proteasom_PSMB: Prote 81.1 9.4 0.0002 38.3 9.0 110 72-199 43-152 (503)
9 PF04826 Arm_2: Armadillo-like 78.1 26 0.00057 32.6 10.3 149 71-252 58-207 (254)
10 PF11841 DUF3361: Domain of un 70.0 9.7 0.00021 33.7 5.1 55 66-124 101-155 (160)
11 cd00020 ARM Armadillo/beta-cat 69.6 5.5 0.00012 29.7 3.1 109 70-193 10-118 (120)
12 PLN03200 cellulose synthase-in 65.9 33 0.00071 41.1 9.5 187 11-243 484-673 (2102)
13 KOG2999|consensus 61.5 13 0.00028 39.4 4.9 104 65-179 211-316 (713)
14 cd00020 ARM Armadillo/beta-cat 59.0 22 0.00047 26.4 4.6 113 114-246 4-116 (120)
15 smart00288 VHS Domain present 56.2 16 0.00035 30.4 3.8 60 133-192 46-108 (133)
16 PLN03200 cellulose synthase-in 55.2 62 0.0013 38.9 9.3 201 10-256 399-599 (2102)
17 PF00790 VHS: VHS domain; Int 51.8 9.8 0.00021 31.7 1.8 87 104-193 23-116 (140)
18 KOG2999|consensus 50.7 28 0.00061 37.0 5.2 54 215-272 210-263 (713)
19 PF03224 V-ATPase_H_N: V-ATPas 50.1 42 0.0009 31.3 5.9 107 56-175 94-200 (312)
20 KOG3175|consensus 46.8 7.7 0.00017 38.5 0.5 29 4-35 83-111 (366)
21 PF01602 Adaptin_N: Adaptin N 46.6 1.2E+02 0.0027 29.2 8.7 181 16-212 153-348 (526)
22 COG5064 SRP1 Karyopherin (impo 46.5 2.9E+02 0.0063 28.4 11.3 175 63-270 232-415 (526)
23 cd03561 VHS VHS domain family; 44.2 44 0.00096 27.6 4.6 101 93-196 4-113 (133)
24 PRK09687 putative lyase; Provi 41.5 3E+02 0.0065 25.7 12.9 44 138-190 173-216 (280)
25 KOG1924|consensus 41.3 1.5E+02 0.0032 33.2 8.8 91 34-126 253-344 (1102)
26 PTZ00429 beta-adaptin; Provisi 36.0 1.6E+02 0.0035 31.8 8.3 65 14-78 178-245 (746)
27 PF05804 KAP: Kinesin-associat 35.8 6E+02 0.013 27.6 12.8 207 11-275 327-539 (708)
28 PF01602 Adaptin_N: Adaptin N 33.8 2.4E+02 0.0053 27.2 8.5 226 15-270 250-503 (526)
29 KOG3175|consensus 28.1 26 0.00055 35.0 0.8 38 145-185 73-110 (366)
30 PF13221 DUF4029: Protein of u 26.5 31 0.00067 28.0 0.9 32 12-43 48-79 (96)
31 PF14904 FAM86: Family of unkn 26.2 1.5E+02 0.0033 24.7 4.9 53 51-108 10-70 (100)
32 PF12069 DUF3549: Protein of u 25.3 2E+02 0.0044 28.5 6.4 41 199-239 228-269 (340)
33 cd03565 VHS_Tom1 VHS domain fa 23.9 2.1E+02 0.0045 24.2 5.5 85 177-271 50-139 (141)
34 cd03569 VHS_Hrs_Vps27p VHS dom 21.6 1.2E+02 0.0027 25.7 3.6 61 133-193 50-112 (142)
35 COG1378 Predicted transcriptio 20.2 1.4E+02 0.003 27.8 3.9 48 70-119 3-59 (247)
36 PF03083 MtN3_slv: Sugar efflu 20.0 58 0.0012 24.6 1.2 32 218-249 17-48 (87)
No 1
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain (IPR003104 from INTERPRO) is required to inhibit actin polymerisation. The FH3 domain is less well conserved and is required for directing formins to the correct intracellular location, such the mitotic spindle [], or the projection tip during conjugation []. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH3 domain.; GO: 0003779 actin binding, 0016043 cellular component organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=97.68 E-value=0.00012 Score=63.13 Aligned_cols=76 Identities=16% Similarity=0.266 Sum_probs=64.3
Q ss_pred chHHHHHHHHHhhhcCC-CCCchHHHHhhccCCCCchHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhhHHHHHh
Q psy8357 200 NCFLLIQAVHAVDNSNG-EPPWSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIR 275 (276)
Q Consensus 200 n~~l~~~Av~~v~~~~~-~~pwsnlm~lL~~~d~~D~E~~v~amTLiNktL~~~pdqds~yd~~d~le~~Gme~i~~ 275 (276)
.+..+++|+..+...++ ..+|.+++..+.+.++.+.|..+.+|++||..+++.||.+....+-..|+.+|+.++++
T Consensus 2 G~~~vl~a~~~~~~~~~e~~RF~~lv~~l~~~~~~~~e~~~~~l~~IN~li~~~~d~~~R~~lr~e~~~~GL~~il~ 78 (197)
T PF06367_consen 2 GHEKVLEAFDNFKEVKGERGRFQSLVGALESVDSSDIEYKTACLQFINSLINSPEDLNFRVHLRNEFERLGLLDILE 78 (197)
T ss_dssp HHHHHHHHHHHHHHHHT-S-TTHHHHHHCS--TTS-HHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCcccHHHHHHHHHccccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCcHHHHH
Confidence 35678899998875555 88999999999866789999999999999999999999999999999999999999886
No 2
>KOG1925|consensus
Probab=97.54 E-value=4.3e-05 Score=77.68 Aligned_cols=54 Identities=44% Similarity=0.747 Sum_probs=43.7
Q ss_pred HHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccch
Q psy8357 95 NKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMT 159 (276)
Q Consensus 95 NktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~ 159 (276)
||++.++||||+|||+.||||+||||.+.+++ ....+++.. ++ .|...|...+.
T Consensus 1 ~K~~~~~~~~~~~~~v~~~L~~~~~~~L~~~H------~~~~~~~~~---~~--~Q~~~~~N~L~ 54 (817)
T KOG1925|consen 1 NKTLAALPDQDSFYDVTDALEQQGMDTLVQRH------LGTAGTDVD---LR--TQLVLYENALK 54 (817)
T ss_pred CCccccCCCccchhHHHHHHHHhhhhHHHHhc------cCCCccccc---cc--chhhhhhhhhh
Confidence 79999999999999999999999999999997 555666654 23 66666665543
No 3
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain (IPR003104 from INTERPRO) is required to inhibit actin polymerisation. The FH3 domain is less well conserved and is required for directing formins to the correct intracellular location, such the mitotic spindle [], or the projection tip during conjugation []. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH3 domain.; GO: 0003779 actin binding, 0016043 cellular component organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=97.16 E-value=0.0016 Score=56.13 Aligned_cols=97 Identities=16% Similarity=0.256 Sum_probs=75.0
Q ss_pred hHHHHHHHHHhhccCC-CCCchHHHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhh
Q psy8357 50 CFLLIQAVHAVDNSNG-EPPWSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQ 128 (276)
Q Consensus 50 ~~lli~Av~~v~~~~g-~~pws~lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~ 128 (276)
+..+++|+.......| ..+|.++|..+.+.++.+.|..+.+|++||-.+++.||.+.-..+...++..|+.+++.++.+
T Consensus 3 ~~~vl~a~~~~~~~~~e~~RF~~lv~~l~~~~~~~~e~~~~~l~~IN~li~~~~d~~~R~~lr~e~~~~GL~~il~~l~~ 82 (197)
T PF06367_consen 3 HEKVLEAFDNFKEVKGERGRFQSLVGALESVDSSDIEYKTACLQFINSLINSPEDLNFRVHLRNEFERLGLLDILEKLRN 82 (197)
T ss_dssp HHHHHHHHHHHHHHHT-S-TTHHHHHHCS--TTS-HHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCcccHHHHHHHHHccccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCcHHHHHHHHh
Confidence 5678888888865555 889999999997657899999999999999999999998777789999999999999999732
Q ss_pred cCCccccCCCCCCchhhhhhcchhhecccch
Q psy8357 129 HGIKYTTSSTDLPTEPLVALGQVMLYVDGMT 159 (276)
Q Consensus 129 ~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~ 159 (276)
. .+. .|. .|+=.|.+.++
T Consensus 83 ~--------~~~---~L~--~Qi~~f~~~~~ 100 (197)
T PF06367_consen 83 L--------EDD---DLQ--EQIDIFEENEE 100 (197)
T ss_dssp S----------H---HHH--HHHHHHHHHHH
T ss_pred c--------chH---HHH--HHHHHHHHHHH
Confidence 2 122 233 78888887765
No 4
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.06 E-value=0.0029 Score=55.61 Aligned_cols=143 Identities=20% Similarity=0.268 Sum_probs=98.8
Q ss_pred HHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccchhh----ccChhHHHHHHHhhcCC--chhHHHH
Q psy8357 112 DALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTGI----MDHPPTVQWLYVLVASK--FRLVIKT 185 (276)
Q Consensus 112 d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~gv----i~h~~tvqwLYsL~~S~--~rlVvKt 185 (276)
+.+...|+..+++... .|.......++.-.|.|+|.-.+|-+ |+ .=.+..|+..=+.+.++ ...+++.
T Consensus 6 EFI~~~Gl~~L~~~iE-~g~~~~~~~~~~La~~L~af~eLMeH-----g~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~ 79 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIE-EGTEIQPCKGEILAYALTAFVELMEH-----GIVSWDTLSDSFIKKIASYVNSSAMDASILQR 79 (160)
T ss_pred HHHhccCHHHHHHHHH-cCCccCcchHHHHHHHHHHHHHHHhc-----CcCchhhccHHHHHHHHHHHccccccchHHHH
Confidence 4678899999998842 12111111246667889988888774 33 33566677776666653 3778888
Q ss_pred HHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhhccCCCCchHHHHHHHHHHHHHhcCCCCCchhhHHHHHH
Q psy8357 186 ALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDAL 265 (276)
Q Consensus 186 aLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL~~~d~~D~E~~v~amTLiNktL~~~pdqds~yd~~d~l 265 (276)
||..|=-+|.= .+-+..- | ....|+.+++..|. ++|.|++.|||.|||..+-++|| ++-.++.+.|
T Consensus 80 sLaILEs~Vl~----S~~ly~~---V---~~evt~~~Li~hLq---~~~~~iq~naiaLinAL~~kA~~-~~r~~i~~~l 145 (160)
T PF11841_consen 80 SLAILESIVLN----SPKLYQL---V---EQEVTLESLIRHLQ---VSNQEIQTNAIALINALFLKADD-SKRKEIAETL 145 (160)
T ss_pred HHHHHHHHHhC----CHHHHHH---H---hccCCHHHHHHHHH---cCCHHHHHHHHHHHHHHHhcCCh-HHHHHHHHHH
Confidence 88877555442 2211111 1 23589999999997 58999999999999999999986 5556888888
Q ss_pred HHhhHHHHH
Q psy8357 266 EEQGIAAVI 274 (276)
Q Consensus 266 e~~Gme~i~ 274 (276)
.+..+..++
T Consensus 146 ~~k~~R~~I 154 (160)
T PF11841_consen 146 SQKQIRQVI 154 (160)
T ss_pred HHHHHHHHH
Confidence 888877665
No 5
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.04 E-value=0.0024 Score=53.72 Aligned_cols=83 Identities=24% Similarity=0.314 Sum_probs=64.3
Q ss_pred HHHHHhhHHHHHHhhhhcCCcc--ccCCCCCCchhhhhhcchhhecccchhhccChhHHHHHHHhhcCCchhHHHHHHhh
Q psy8357 112 DALEEQGIAAVIRSLDQHGIKY--TTSSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKL 189 (276)
Q Consensus 112 d~Le~~Gme~i~~~~~~~~~~~--~~~~tn~q~YiLrAl~q~mlYvdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkL 189 (276)
.+++..|++.++.-+.+...+. +....+.+..+++.++.+|=.-.|+..|++||+.|..|-...+|+.-.+-+.|+++
T Consensus 102 ~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~lei 181 (187)
T PF06371_consen 102 EFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEI 181 (187)
T ss_dssp HH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4578899999888764332111 11223566778999999999999999999999999999999999988999999999
Q ss_pred heeeE
Q psy8357 190 LLIFV 194 (276)
Q Consensus 190 LlVfv 194 (276)
|-++|
T Consensus 182 L~~lc 186 (187)
T PF06371_consen 182 LAALC 186 (187)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98775
No 6
>KOG1924|consensus
Probab=90.80 E-value=0.97 Score=48.96 Aligned_cols=249 Identities=18% Similarity=0.187 Sum_probs=156.8
Q ss_pred chhhhHHHHhhcCcchhHHHHHhhHhheeeee---ccch-hHHH-----------------HHHHHHhhccCCCCCchHH
Q psy8357 14 PPTVQWLYVLVASKFRLVIKTALKLLLIFVEY---VESN-CFLL-----------------IQAVHAVDNSNGEPPWSNI 72 (276)
Q Consensus 14 ~~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey---~e~n-~~ll-----------------i~Av~~v~~~~g~~pws~l 72 (276)
-.|.|-+|+. -|.+.++..+.+.....|= +|.- .+++ ..+++..+.+...++--.+
T Consensus 70 ~pt~q~~q~~---~~~ls~~e~~~~F~~~~~dmni~eekr~pll~K~~~ek~kmis~~l~~k~~~~~s~ne~~~~s~eyV 146 (1102)
T KOG1924|consen 70 YPTAQGLQDI---GFSLSSNEVLELFELMGEDMNINEEKRKPLLDKDLPEKRKMISQYLQMKMMIRKSDNEAKGSSPEYV 146 (1102)
T ss_pred CcccccHHHH---hhhccHHHHHHHHHHHhhhccccHhhhhhhhhcCchHHHHHHHHHHHHHHHHhhhhhhhccCChHHH
Confidence 3577888876 4566667666666655432 2221 2222 1123344555555666778
Q ss_pred HHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhh-HHHHHHhhhhcCCccccC-CCCCCchhhhhhcc
Q psy8357 73 MRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQG-IAAVIRSLDQHGIKYTTS-STDLPTEPLVALGQ 150 (276)
Q Consensus 73 m~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~G-me~i~~~~~~~~~~~~~~-~tn~q~YiLrAl~q 150 (276)
.++..+ -+|.-++=+.-| +-..|.+=|= ||-.- +.-|-.| +.+++.|++++- ..++ ..+.+.-|+|-+.+
T Consensus 147 ~~l~~g--l~t~~l~~Cles-lRVsL~~npV--Swvn~-Fgvegl~ll~~~Lkrl~dsk--~~~~~~~k~~~eiIrClka 218 (1102)
T KOG1924|consen 147 VELRSG--LSTKKLLECLES-LRVSLTSNPV--SWVNK-FGVEGLGLLLDVLKRLRDSK--VGSKLDIKNLQEIIRCLKA 218 (1102)
T ss_pred HHHHcc--cccccHHHHHHH-HhhhhcCCcc--HHHHH-hhhhhHHHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHHHH
Confidence 888854 455555555333 4455554441 22110 1111111 345666654321 1222 22333457899999
Q ss_pred hhhecccchhhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeeccCchH-HHHHHHHHhhhcCCCCCchHHHHhhcc
Q psy8357 151 VMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCF-LLIQAVHAVDNSNGEPPWSNIMRLLTD 229 (276)
Q Consensus 151 ~mlYvdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~e~n~~-l~~~Av~~v~~~~~~~pwsnlm~lL~~ 229 (276)
+|=-.=|.+-|++.+.-+-.|-.-++.+-.+..-.++|||--||=-.|.|.. -+..|+...|.+...--|+.|++=|.-
T Consensus 219 ~mNn~~Gl~~vL~~e~~lllla~aldpr~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~~~veRF~piv~gl~~ 298 (1102)
T KOG1924|consen 219 FMNNKFGLVLVLRRERSLLLLARALDPREPNMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEAKPVERFRPIVEGLDF 298 (1102)
T ss_pred HhccccceeeeecCCccHHHHHHhcCccCccHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhhcchhhhhhHHHHHhc
Confidence 9999999999999999888777777877666666677777655544455555 788999999999988999999999962
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhhHHHHHh
Q psy8357 230 RDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIR 275 (276)
Q Consensus 230 ~d~~D~E~~v~amTLiNktL~~~pdqds~yd~~d~le~~Gme~i~~ 275 (276)
+-+.-++|-+|.+||-.-....|-|-.--+-..+-..|++++++
T Consensus 299 --~e~~~l~vacmq~INal~t~p~dldfRlhlR~E~mr~gL~~~l~ 342 (1102)
T KOG1924|consen 299 --LEKQQLQVACMQFINALVTSPSDLDFRLHLRSEFMRDGLHKYLP 342 (1102)
T ss_pred --cchHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHhHHHHHH
Confidence 33889999999999987766666555555555555666666553
No 7
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=85.52 E-value=13 Score=37.45 Aligned_cols=225 Identities=19% Similarity=0.176 Sum_probs=131.7
Q ss_pred cccCchhhhHHHHhhcCcchhHHHHHhhHhheeeeeccchhHH----HHHHHHHhhcc-C---CCCCchHHHHhhccCCC
Q psy8357 10 IMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFL----LIQAVHAVDNS-N---GEPPWSNIMRLLTDRDS 81 (276)
Q Consensus 10 vi~h~~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n~~l----li~Av~~v~~~-~---g~~pws~lm~lL~~~ds 81 (276)
....++++.-+-..++++.--|+|.|.++|--+..+.+.-..+ +...+..+-.. . -.+-++-++++- +
T Consensus 114 ~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~----~ 189 (503)
T PF10508_consen 114 LLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIA----S 189 (503)
T ss_pred HhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHH----h
Confidence 4566778888889999999999999999999998876543322 03333333322 1 122233333333 4
Q ss_pred CchHHHHHHHH--HHHHhhCCCCCCchhh---------HHH------HHHHHhhHHHHHHhhhhcCCccccCCCCCC---
Q psy8357 82 TDTELLIYAMS--LLNKTLNGIPDQDSYY---------DQV------DALEEQGIAAVIRSLDQHGIKYTTSSTDLP--- 141 (276)
Q Consensus 82 ~D~EllvyamT--LiNktL~~lpDqDs~y---------D~~------d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q--- 141 (276)
...|..-+.+. ++.+.++.+.+.|-.- ++. ..|+++|+=+.+-.+ +..+..|+.
T Consensus 190 ~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~------l~~~~~dp~~~~ 263 (503)
T PF10508_consen 190 HSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNL------LQDSEEDPRLSS 263 (503)
T ss_pred cCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHH------HhccccCCcccc
Confidence 55666666666 7888888888777433 221 125566554444443 344555541
Q ss_pred chhh---hhhcchhhecccchhhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCC
Q psy8357 142 TEPL---VALGQVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEP 218 (276)
Q Consensus 142 ~YiL---rAl~q~mlYvdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~ 218 (276)
.|+. +..+.+- .++.-...-.+|..+.-|+++..|......-.|++.+=.++--.| +..++ ..+. .+
T Consensus 264 ~~l~g~~~f~g~la-~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~-G~~~L-------~~~~-~~ 333 (503)
T PF10508_consen 264 LLLPGRMKFFGNLA-RVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVE-GKQLL-------LQKQ-GP 333 (503)
T ss_pred hhhhhHHHHHHHHH-hcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHH-HHHHH-------Hhhc-ch
Confidence 1111 2222222 224444556778889999999999888888888888777763333 33333 1111 12
Q ss_pred CchHHHHhhcc-CCCCchHHHHHHHHHHHHHhcCCCC
Q psy8357 219 PWSNIMRLLTD-RDSTDTELLIYAMSLLNKTLNGIPD 254 (276)
Q Consensus 219 pwsnlm~lL~~-~d~~D~E~~v~amTLiNktL~~~pd 254 (276)
...+.++-..+ ..++-+|+++.++.-++..+..-++
T Consensus 334 ~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~ 370 (503)
T PF10508_consen 334 AMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTD 370 (503)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCC
Confidence 33333333322 2356778888888888888766655
No 8
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=81.10 E-value=9.4 Score=38.35 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=82.6
Q ss_pred HHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcch
Q psy8357 72 IMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQV 151 (276)
Q Consensus 72 lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~ 151 (276)
+...|. .++.|..-.+.-.|.+.+...+-++. .++....+++. +..++...+..++++++.+
T Consensus 43 lf~~L~---~~~~e~v~~~~~iL~~~l~~~~~~~l---------~~~~~~~L~~g------L~h~~~~Vr~l~l~~l~~~ 104 (503)
T PF10508_consen 43 LFDCLN---TSNREQVELICDILKRLLSALSPDSL---------LPQYQPFLQRG------LTHPSPKVRRLALKQLGRI 104 (503)
T ss_pred HHHHHh---hcChHHHHHHHHHHHHHHhccCHHHH---------HHHHHHHHHHH------hcCCCHHHHHHHHHHHHHH
Confidence 566674 44777777877888998887764443 23333444443 3445667777777777887
Q ss_pred hhecccchhhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeeccC
Q psy8357 152 MLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVES 199 (276)
Q Consensus 152 mlYvdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~e~ 199 (276)
.-..+|.-.+...++++.-+-.++.++-..|++.|.++|--++.+.+.
T Consensus 105 ~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~ 152 (503)
T PF10508_consen 105 ARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG 152 (503)
T ss_pred hcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh
Confidence 777788888899999999999999999999999999999999887653
No 9
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=78.07 E-value=26 Score=32.61 Aligned_cols=149 Identities=18% Similarity=0.189 Sum_probs=93.8
Q ss_pred HHHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccc-cCCCCCCchhhhhhc
Q psy8357 71 NIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYT-TSSTDLPTEPLVALG 149 (276)
Q Consensus 71 ~lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~-~~~tn~q~YiLrAl~ 149 (276)
-+.++|. .++.++...|+- +|+++...+...+.+.. -+..+++.. ++ ...++.|.=.||+|+
T Consensus 58 lI~~lL~---~p~~~vr~~AL~----aL~Nls~~~en~~~Ik~----~i~~Vc~~~------~s~~lns~~Q~agLrlL~ 120 (254)
T PF04826_consen 58 LIGSLLN---DPNPSVREKALN----ALNNLSVNDENQEQIKM----YIPQVCEET------VSSPLNSEVQLAGLRLLT 120 (254)
T ss_pred HHHHHcC---CCChHHHHHHHH----HHHhcCCChhhHHHHHH----HHHHHHHHH------hcCCCCCHHHHHHHHHHH
Confidence 4566773 578899888765 44456655555555433 355555553 11 246678888899999
Q ss_pred chhhecccchhhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhhcc
Q psy8357 150 QVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTD 229 (276)
Q Consensus 150 q~mlYvdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL~~ 229 (276)
+.-+=.+. +-++. ..|..+++|..+....+=-++||+|.- .++++.. .-+.+.+ +--+++|.++.
T Consensus 121 nLtv~~~~-~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~n---LS~np~~-~~~Ll~~-------q~~~~~~~Lf~- 185 (254)
T PF04826_consen 121 NLTVTNDY-HHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVN---LSENPDM-TRELLSA-------QVLSSFLSLFN- 185 (254)
T ss_pred ccCCCcch-hhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHH---hccCHHH-HHHHHhc-------cchhHHHHHHc-
Confidence 98755444 33432 247778899988666655678886654 4553332 2222221 34678999996
Q ss_pred CCCCchHHHHHHHHHHHHHhcCC
Q psy8357 230 RDSTDTELLIYAMSLLNKTLNGI 252 (276)
Q Consensus 230 ~d~~D~E~~v~amTLiNktL~~~ 252 (276)
.+.+.|.++.++|++-..-+++
T Consensus 186 -~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 186 -SSESKENLLRVLTFFENINENI 207 (254)
T ss_pred -cCCccHHHHHHHHHHHHHHHhh
Confidence 4458999999999876554443
No 10
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=70.04 E-value=9.7 Score=33.74 Aligned_cols=55 Identities=22% Similarity=0.315 Sum_probs=44.8
Q ss_pred CCCchHHHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHH
Q psy8357 66 EPPWSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIR 124 (276)
Q Consensus 66 ~~pws~lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~ 124 (276)
..|+-++.+.|. ++|.|+..+||.|||-.+-..||.+ =.++.+.|.+..+..++-
T Consensus 101 evt~~~Li~hLq---~~~~~iq~naiaLinAL~~kA~~~~-r~~i~~~l~~k~~R~~I~ 155 (160)
T PF11841_consen 101 EVTLESLIRHLQ---VSNQEIQTNAIALINALFLKADDSK-RKEIAETLSQKQIRQVIL 155 (160)
T ss_pred cCCHHHHHHHHH---cCCHHHHHHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHHHHHH
Confidence 589999999996 4999999999999999999888743 347777777777665554
No 11
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=69.58 E-value=5.5 Score=29.75 Aligned_cols=109 Identities=19% Similarity=0.161 Sum_probs=70.5
Q ss_pred hHHHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhc
Q psy8357 70 SNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALG 149 (276)
Q Consensus 70 s~lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~ 149 (276)
..+.++|.+ ++.++.-.|...+-.....-| ..... .++..+++.+++.+. .+....+.+++.|++
T Consensus 10 ~~l~~~l~~---~~~~~~~~a~~~l~~l~~~~~---~~~~~--~~~~~~i~~l~~~l~-------~~~~~v~~~a~~~L~ 74 (120)
T cd00020 10 PALVSLLSS---SDENVQREAAWALSNLSAGNN---DNIQA--VVEAGGLPALVQLLK-------SEDEEVVKAALWALR 74 (120)
T ss_pred HHHHHHHHc---CCHHHHHHHHHHHHHHhcCCH---HHHHH--HHHCCChHHHHHHHh-------CCCHHHHHHHHHHHH
Confidence 356777753 447788887776655444432 33322 355688888888753 334566777888888
Q ss_pred chhhecccchhhccChhHHHHHHHhhcCCchhHHHHHHhhheee
Q psy8357 150 QVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIF 193 (276)
Q Consensus 150 q~mlYvdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVf 193 (276)
++--.......++.....+..|=.+.++....+.+.|+.+|--+
T Consensus 75 ~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 75 NLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 88765544445555566788888888777777777777665433
No 12
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=65.86 E-value=33 Score=41.07 Aligned_cols=187 Identities=13% Similarity=0.109 Sum_probs=123.0
Q ss_pred ccCchhhhHHHHhhcCcchhHHHHHhhHhheeeeeccchhHHHHHHHHHhhccCCCCCchHHHHhhccCCCCchHHHHHH
Q psy8357 11 MDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYA 90 (276)
Q Consensus 11 i~h~~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~~ds~D~Ellvya 90 (276)
|-+...|..|..|..|+..-+-|.|.-.|.-..-. ++|..-++. .+ |.-| .++++|. ++|.+.+-.|
T Consensus 484 IieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV~------~a-GAIp--pLV~LL~---sgd~~~q~~A 550 (2102)
T PLN03200 484 ITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACVE------SA-GAVP--ALLWLLK---NGGPKGQEIA 550 (2102)
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHHH------HC-CCHH--HHHHHHh---CCCHHHHHHH
Confidence 33456788888888888888888877777655443 334333332 12 2222 4899994 5688888776
Q ss_pred HHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccchhh---ccChhH
Q psy8357 91 MSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTGI---MDHPPT 167 (276)
Q Consensus 91 mTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~gv---i~h~~t 167 (276)
..-|...+.. .|.+.. ..++.. +...+.+.+.+++++++.+.--.++.+.+ ...+.-
T Consensus 551 a~AL~nLi~~-~d~~~I------------~~Lv~L-------Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~gg 610 (2102)
T PLN03200 551 AKTLTKLVRT-ADAATI------------SQLTAL-------LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDA 610 (2102)
T ss_pred HHHHHHHHhc-cchhHH------------HHHHHH-------hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhcccc
Confidence 6544444332 333322 223333 34566788899999999998877776544 345788
Q ss_pred HHHHHHhhcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhhccCCCCchHHHHHHHH
Q psy8357 168 VQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMS 243 (276)
Q Consensus 168 vqwLYsL~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL~~~d~~D~E~~v~amT 243 (276)
+.-|..|..|.-..+-|.|...|.-+|..+..++. .+..+.+.|| ++++|. +++.|.+-.+-.
T Consensus 611 L~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~-------avv~agaIpP---LV~LLs---s~~~~v~keAA~ 673 (2102)
T PLN03200 611 LRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCE-------SLATDEIINP---CIKLLT---NNTEAVATQSAR 673 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHH-------HHHHcCCHHH---HHHHHh---cCChHHHHHHHH
Confidence 99999999999999999999999888776655443 3444455555 666775 566666655433
No 13
>KOG2999|consensus
Probab=61.52 E-value=13 Score=39.37 Aligned_cols=104 Identities=22% Similarity=0.274 Sum_probs=72.9
Q ss_pred CCCCchHHHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchh
Q psy8357 65 GEPPWSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEP 144 (276)
Q Consensus 65 g~~pws~lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~Yi 144 (276)
.--|.-.+.+-|+ .+|.++..||+.|+|-..-++||. .-+++.+.+++-..-..+... .-......|+|.
T Consensus 211 eev~i~~li~hlq---~~n~~i~~~aial~nal~~~a~~~-~R~~~~~~l~~~~~R~ai~~~------~~~~~~~~~lyv 280 (713)
T KOG2999|consen 211 EEVPIETLIRHLQ---VSNQRIQTCAIALLNALFRKAPDD-KRFEMAKSLEQKQFRNAIHSN------VIRTERPIQLYV 280 (713)
T ss_pred hcCcHHHHHHHHH---hcchHHHHHHHHHHHHHHhhCChH-HHHHHHHHHHHHHHHHHHHHh------hhcccchHHHHH
Confidence 4467778888886 699999999999999999999977 666799999988777766654 334455569999
Q ss_pred hhhhcchhhecccchhhccChhHHH--HHHHhhcCCc
Q psy8357 145 LVALGQVMLYVDGMTGIMDHPPTVQ--WLYVLVASKF 179 (276)
Q Consensus 145 LrAl~q~mlYvdGM~gvi~h~~tvq--wLYsL~~S~~ 179 (276)
|.+|.--. -+..|.--|.....+| .+..+-.+.|
T Consensus 281 lq~L~~gl-le~Rm~~~md~~~q~qr~~i~~lr~iaf 316 (713)
T KOG2999|consen 281 LQVLTLGL-LEVRMRTKMDPQDQVQRELISELRRIAF 316 (713)
T ss_pred HHHHHHhh-hHHhhhcccchhhHHHHHHHHHHHhcCc
Confidence 88764332 3444555555555554 3455544444
No 14
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=59.04 E-value=22 Score=26.44 Aligned_cols=113 Identities=20% Similarity=0.234 Sum_probs=71.3
Q ss_pred HHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccchhhccChhHHHHHHHhhcCCchhHHHHHHhhheee
Q psy8357 114 LEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIF 193 (276)
Q Consensus 114 Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVf 193 (276)
.++.+++.+++.+.+ ...+....++.+++.+....+....-+...+.++.|-.+..++...|.+.|+..|--+
T Consensus 4 ~~~~~i~~l~~~l~~-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l 76 (120)
T cd00020 4 IQAGGLPALVSLLSS-------SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNL 76 (120)
T ss_pred HHcCChHHHHHHHHc-------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 355667777776522 2235556677777777766333333444458888888888888888999999998888
Q ss_pred EeeccCchHHHHHHHHHhhhcCCCCCchHHHHhhccCCCCchHHHHHHHHHHH
Q psy8357 194 VEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLN 246 (276)
Q Consensus 194 vey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL~~~d~~D~E~~v~amTLiN 246 (276)
+...+++...+++ .|.. ..++++|. ..|.++.-.+...+.
T Consensus 77 ~~~~~~~~~~~~~--------~g~l--~~l~~~l~---~~~~~~~~~a~~~l~ 116 (120)
T cd00020 77 AAGPEDNKLIVLE--------AGGV--PKLVNLLD---SSNEDIQKNATGALS 116 (120)
T ss_pred ccCcHHHHHHHHH--------CCCh--HHHHHHHh---cCCHHHHHHHHHHHH
Confidence 7655422222222 2322 35677775 346777777776654
No 15
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=56.21 E-value=16 Score=30.36 Aligned_cols=60 Identities=17% Similarity=0.129 Sum_probs=44.8
Q ss_pred cccCCCCCCchhhhhhcchhhe-cccchhhccChhHHHHHHHhhcCCchh--HHHHHHhhhee
Q psy8357 133 YTTSSTDLPTEPLVALGQVMLY-VDGMTGIMDHPPTVQWLYVLVASKFRL--VIKTALKLLLI 192 (276)
Q Consensus 133 ~~~~~tn~q~YiLrAl~q~mlY-vdGM~gvi~h~~tvqwLYsL~~S~~rl--VvKtaLkLLlV 192 (276)
+.....+.|.++|+.+..++-= -+.++.-+.+.+.++-|..++.++... |-+.+|+++.-
T Consensus 46 l~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~ 108 (133)
T smart00288 46 LNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQE 108 (133)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 4456668888888888888765 566777788999999999999886643 66666666543
No 16
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=55.19 E-value=62 Score=38.93 Aligned_cols=201 Identities=17% Similarity=0.115 Sum_probs=123.9
Q ss_pred cccCchhhhHHHHhhcCcchhHHHHHhhHhheeeeeccchhHHHHHHHHHhhccCCCCCchHHHHhhccCCCCchHHHHH
Q psy8357 10 IMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIY 89 (276)
Q Consensus 10 vi~h~~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~~ds~D~Ellvy 89 (276)
++.|.+.++-|.+|..+.-.-+-+.+-.-|--.++..++++..++ ...|. ..++++|. +++.+.+-+
T Consensus 399 ~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi-------~~ggI---p~LV~LL~---s~s~~iQ~~ 465 (2102)
T PLN03200 399 KLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALG-------GREGV---QLLISLLG---LSSEQQQEY 465 (2102)
T ss_pred HHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHH-------HcCcH---HHHHHHHc---CCCHHHHHH
Confidence 456666677777777766666666666666555555555544433 33343 46889995 567888888
Q ss_pred HHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccchhhccChhHHH
Q psy8357 90 AMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQ 169 (276)
Q Consensus 90 amTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~gvi~h~~tvq 169 (276)
|...+.- +..- .|..... -.+..|+.-+++-+ ..++.+.|-=+..|++++-...+....++.....|.
T Consensus 466 A~~~L~n-La~~--ndenr~a--IieaGaIP~LV~LL-------~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIp 533 (2102)
T PLN03200 466 AVALLAI-LTDE--VDESKWA--ITAAGGIPPLVQLL-------ETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVP 533 (2102)
T ss_pred HHHHHHH-HHcC--CHHHHHH--HHHCCCHHHHHHHH-------cCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHH
Confidence 8765532 2211 1111211 34667788888775 334445555566777777776556666666666777
Q ss_pred HHHHhhcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhhccCCCCchHHHHHHHHHHHHHh
Q psy8357 170 WLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLNKTL 249 (276)
Q Consensus 170 wLYsL~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL~~~d~~D~E~~v~amTLiNktL 249 (276)
.|..+..|....+-+.|+..|.-++...+ +. .. +.++.+|. +.|.+.+.+++..+=..+
T Consensus 534 pLV~LL~sgd~~~q~~Aa~AL~nLi~~~d-~~--------------~I---~~Lv~LLl---sdd~~~~~~aL~vLgnIl 592 (2102)
T PLN03200 534 ALLWLLKNGGPKGQEIAAKTLTKLVRTAD-AA--------------TI---SQLTALLL---GDLPESKVHVLDVLGHVL 592 (2102)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhccc-hh--------------HH---HHHHHHhc---CCChhHHHHHHHHHHHHH
Confidence 78888887666666777776655544332 11 11 44667775 678899999988776666
Q ss_pred cCCCCCc
Q psy8357 250 NGIPDQD 256 (276)
Q Consensus 250 ~~~pdqd 256 (276)
+..+..|
T Consensus 593 sl~~~~d 599 (2102)
T PLN03200 593 SVASLED 599 (2102)
T ss_pred hhcchhH
Confidence 6666554
No 17
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=51.83 E-value=9.8 Score=31.68 Aligned_cols=87 Identities=16% Similarity=0.154 Sum_probs=57.4
Q ss_pred CchhhHHHHHHHHh--hHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhec-ccchhhccChhHHHHHHHhhcCCch
Q psy8357 104 QDSYYDQVDALEEQ--GIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYV-DGMTGIMDHPPTVQWLYVLVASKFR 180 (276)
Q Consensus 104 qDs~yD~~d~Le~~--Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYv-dGM~gvi~h~~tvqwLYsL~~S~~r 180 (276)
-+..-+++|.+... |-...++.++++ +.....+.|.|+|..+..++-=- +-.+.-+...+.+..|+.|+.++..
T Consensus 23 w~~~l~icD~i~~~~~~~kea~~~l~kr---l~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~ 99 (140)
T PF00790_consen 23 WSLILEICDLINSSPDGAKEAARALRKR---LKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKT 99 (140)
T ss_dssp HHHHHHHHHHHHTSTTHHHHHHHHHHHH---HTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 35556666666554 445555554433 55566788888888888887643 3455567788888899998886554
Q ss_pred h----HHHHHHhhheee
Q psy8357 181 L----VIKTALKLLLIF 193 (276)
Q Consensus 181 l----VvKtaLkLLlVf 193 (276)
. |-+.+++++..+
T Consensus 100 ~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 100 DPETPVKEKILELLQEW 116 (140)
T ss_dssp HHHSHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHH
Confidence 3 566777777654
No 18
>KOG2999|consensus
Probab=50.73 E-value=28 Score=37.02 Aligned_cols=54 Identities=22% Similarity=0.426 Sum_probs=45.9
Q ss_pred CCCCCchHHHHhhccCCCCchHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhhHHH
Q psy8357 215 NGEPPWSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAA 272 (276)
Q Consensus 215 ~~~~pwsnlm~lL~~~d~~D~E~~v~amTLiNktL~~~pdqds~yd~~d~le~~Gme~ 272 (276)
..--|...++.-|. .+|.+++.+|+.|+|..+-++||. ...++.+.+++-....
T Consensus 210 ~eev~i~~li~hlq---~~n~~i~~~aial~nal~~~a~~~-~R~~~~~~l~~~~~R~ 263 (713)
T KOG2999|consen 210 AEEVPIETLIRHLQ---VSNQRIQTCAIALLNALFRKAPDD-KRFEMAKSLEQKQFRN 263 (713)
T ss_pred HhcCcHHHHHHHHH---hcchHHHHHHHHHHHHHHhhCChH-HHHHHHHHHHHHHHHH
Confidence 34578999999997 789999999999999999999987 7778888888765443
No 19
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=50.05 E-value=42 Score=31.26 Aligned_cols=107 Identities=14% Similarity=0.250 Sum_probs=62.2
Q ss_pred HHHHhhccCCCCCchHHHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCcccc
Q psy8357 56 AVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTT 135 (276)
Q Consensus 56 Av~~v~~~~g~~pws~lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~ 135 (276)
++..........||..++++++ .+|.=+..-|..++..-++.-|.++.... +.-+...++-+.+. ..+
T Consensus 94 ~~~~~~~~~~~~~~~~fl~ll~---~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~------~~~l~~ll~~L~~~---l~~ 161 (312)
T PF03224_consen 94 LFLELAKQDDSDPYSPFLKLLD---RNDSFIQLKAAFILTSLLSQGPKRSEKLV------KEALPKLLQWLSSQ---LSS 161 (312)
T ss_dssp HHHHHHH-TTH--HHHHHHH-S----SSHHHHHHHHHHHHHHHTSTTT--HHHH------HHHHHHHHHHHH-T---T-H
T ss_pred HHHHhcccccchhHHHHHHHhc---CCCHHHHHHHHHHHHHHHHcCCccccchH------HHHHHHHHHHHHHh---hcC
Confidence 3333333333349999999874 56898999999999999999888776643 12223333333221 344
Q ss_pred CCCCCCchhhhhhcchhhecccchhhccChhHHHHHHHhh
Q psy8357 136 SSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQWLYVLV 175 (276)
Q Consensus 136 ~~tn~q~YiLrAl~q~mlYvdGM~gvi~h~~tvqwLYsL~ 175 (276)
+..+.+..+++++..++ .++.-.-++-++..++-|.++.
T Consensus 162 ~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l~~iL 200 (312)
T PF03224_consen 162 SDSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPLFDIL 200 (312)
T ss_dssp HHH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHHHHHH
Confidence 56677777888777764 6666666655577777777766
No 20
>KOG3175|consensus
Probab=46.82 E-value=7.7 Score=38.48 Aligned_cols=29 Identities=41% Similarity=0.485 Sum_probs=26.1
Q ss_pred eccccccccCchhhhHHHHhhcCcchhHHHHH
Q psy8357 4 VDGMTGIMDHPPTVQWLYVLVASKFRLVIKTA 35 (276)
Q Consensus 4 VDGM~gvi~h~~tiqwLy~L~~S~~rlVvKta 35 (276)
|+||||+ +-|+|||..|+--++|.|-++=
T Consensus 83 ~~~~n~~---~~t~~~~~e~li~p~~nv~~~d 111 (366)
T KOG3175|consen 83 VTGFNGI---PFTIQRLCELLIDPRRNVTGTD 111 (366)
T ss_pred hhhccCC---CHHHHHHHHHhcCcccccCcch
Confidence 7899997 7899999999999999998764
No 21
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=46.62 E-value=1.2e+02 Score=29.20 Aligned_cols=181 Identities=20% Similarity=0.230 Sum_probs=99.6
Q ss_pred hhhHHHHhhcCcchhHHHHHhhHhheeeeeccch-hHHHHHHHHHhhcc-CCCCCch--HHHHhhccCCCCchHHH--HH
Q psy8357 16 TVQWLYVLVASKFRLVIKTALKLLLIFVEYVESN-CFLLIQAVHAVDNS-NGEPPWS--NIMRLLTDRDSTDTELL--IY 89 (276)
Q Consensus 16 tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n-~~lli~Av~~v~~~-~g~~pws--~lm~lL~~~ds~D~Ell--vy 89 (276)
.++-|.++..++.-.|+..|+.++.-+ ++.+.. ..++...++...+- .-.-||. .++++|...-..+.+.. --
T Consensus 153 ~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~ 231 (526)
T PF01602_consen 153 LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNR 231 (526)
T ss_dssp HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHH
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHH
Confidence 577788999989999999999988777 333332 25666666665544 6667885 46677754333333322 11
Q ss_pred HHHHHHHhhCCCCCCchhhHHHHH---------HHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccchh
Q psy8357 90 AMSLLNKTLNGIPDQDSYYDQVDA---------LEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTG 160 (276)
Q Consensus 90 amTLiNktL~~lpDqDs~yD~~d~---------Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~g 160 (276)
.+..+...+.. .+..-.|..+.+ +-+..+..+++. ++.++.|.+-.+|+++.++.--. ..
T Consensus 232 ~i~~l~~~l~s-~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~l-------L~s~~~nvr~~~L~~L~~l~~~~---~~ 300 (526)
T PF01602_consen 232 IIEPLLNLLQS-SSPSVVYEAIRLIIKLSPSPELLQKAINPLIKL-------LSSSDPNVRYIALDSLSQLAQSN---PP 300 (526)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHH-------HTSSSHHHHHHHHHHHHHHCCHC---HH
T ss_pred HHHHHHHHhhc-cccHHHHHHHHHHHHhhcchHHHHhhHHHHHHH-------hhcccchhehhHHHHHHHhhccc---ch
Confidence 12222221110 001111222222 233344444444 34455556656666666554432 22
Q ss_pred hccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhh
Q psy8357 161 IMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVD 212 (276)
Q Consensus 161 vi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~ 212 (276)
.+.+++.+ ++.+..+....+.+.||++|.-+++ ++|+..++.....+.
T Consensus 301 ~v~~~~~~--~~~l~~~~d~~Ir~~~l~lL~~l~~--~~n~~~Il~eL~~~l 348 (526)
T PF01602_consen 301 AVFNQSLI--LFFLLYDDDPSIRKKALDLLYKLAN--ESNVKEILDELLKYL 348 (526)
T ss_dssp HHGTHHHH--HHHHHCSSSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred hhhhhhhh--hheecCCCChhHHHHHHHHHhhccc--ccchhhHHHHHHHHH
Confidence 33355554 3455546667789999999998874 667777776666654
No 22
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=46.46 E-value=2.9e+02 Score=28.41 Aligned_cols=175 Identities=25% Similarity=0.342 Sum_probs=106.9
Q ss_pred cCCCCCchHHH-------HhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCcccc
Q psy8357 63 SNGEPPWSNIM-------RLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTT 135 (276)
Q Consensus 63 ~~g~~pws~lm-------~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~ 135 (276)
++-.|.|+++- |++ .+-|+|+++-|.- +++.+.|--.. -++..-.-|+-.-+-.+ ++.
T Consensus 232 knP~P~w~~isqalpiL~KLi---ys~D~evlvDA~W----AiSYlsDg~~E--~i~avld~g~~~RLvEl------Ls~ 296 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLI---YSRDPEVLVDACW----AISYLSDGPNE--KIQAVLDVGIPGRLVEL------LSH 296 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHH---hhcCHHHHHHHHH----HHHHhccCcHH--HHHHHHhcCCcHHHHHH------hcC
Confidence 44456699864 444 3678888887654 23333332111 12333334433322222 577
Q ss_pred CCCCCCchhhhhhcchhhecccchhhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeeccCchHH-HHHHHHHhhhc
Q psy8357 136 SSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFL-LIQAVHAVDNS 214 (276)
Q Consensus 136 ~~tn~q~YiLrAl~q~mlYvdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~e~n~~l-~~~Av~~v~~~ 214 (276)
++...|+=+||+.|++.-=-|-=..|+=+-..+.-+-+|.+|+-..+-|.|- ++=||..- =.+-+++|-.+
T Consensus 297 ~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaC--------WTiSNITAGnteqiqavid~ 368 (526)
T COG5064 297 ESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEAC--------WTISNITAGNTEQIQAVIDA 368 (526)
T ss_pred ccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhh--------eeecccccCCHHHHHHHHhc
Confidence 8899999999999999988888888877777888888999998778878663 33333321 13445666666
Q ss_pred CCCCCchHHHHhhccCCCCchHHHHH-HHHHHHHHhcCCCCCchhhHHHHHHHHhhH
Q psy8357 215 NGEPPWSNIMRLLTDRDSTDTELLIY-AMSLLNKTLNGIPDQDSYYDQVDALEEQGI 270 (276)
Q Consensus 215 ~~~~pwsnlm~lL~~~d~~D~E~~v~-amTLiNktL~~~pdqds~yd~~d~le~~Gm 270 (276)
.=.|| ++++|+ +.|.-++=- |....|-|-.|+--+ |+++-|-+||.
T Consensus 369 nliPp---Li~lls---~ae~k~kKEACWAisNatsgg~~~P----D~iryLv~qG~ 415 (526)
T COG5064 369 NLIPP---LIHLLS---SAEYKIKKEACWAISNATSGGLNRP----DIIRYLVSQGF 415 (526)
T ss_pred ccchH---HHHHHH---HHHHHHHHHHHHHHHhhhccccCCc----hHHHHHHHccc
Confidence 76776 677775 444444332 345556665444333 44666666664
No 23
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=44.16 E-value=44 Score=27.60 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=65.2
Q ss_pred HHHHhhCCC---CCCchhhHHHHHHHHh--hHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhec-ccchhhccChh
Q psy8357 93 LLNKTLNGI---PDQDSYYDQVDALEEQ--GIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYV-DGMTGIMDHPP 166 (276)
Q Consensus 93 LiNktL~~l---pDqDs~yD~~d~Le~~--Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYv-dGM~gvi~h~~ 166 (276)
+|+|.-+.. ||-+.-.+++|.+... |=...+|.++++ +..+..+.|.++|..+..++-=- +.+..-+...+
T Consensus 4 ~I~kATs~~~~~~D~~~il~icd~I~~~~~~~k~a~raL~kr---l~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~ 80 (133)
T cd03561 4 LIERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKK---IKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKE 80 (133)
T ss_pred HHHHHcCcccCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHH
Confidence 455554432 5556666777776655 555555555444 45567788888888888877643 33666677777
Q ss_pred HHHHHHHhhcC---CchhHHHHHHhhheeeEee
Q psy8357 167 TVQWLYVLVAS---KFRLVIKTALKLLLIFVEY 196 (276)
Q Consensus 167 tvqwLYsL~~S---~~rlVvKtaLkLLlVfvey 196 (276)
-...|..++.+ ...-|-+.+|+++.-.-+.
T Consensus 81 fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 81 FLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 77778888875 3466777777777655433
No 24
>PRK09687 putative lyase; Provisional
Probab=41.53 E-value=3e+02 Score=25.71 Aligned_cols=44 Identities=20% Similarity=0.180 Sum_probs=26.1
Q ss_pred CCCCchhhhhhcchhhecccchhhccChhHHHHHHHhhcCCchhHHHHHHhhh
Q psy8357 138 TDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLL 190 (276)
Q Consensus 138 tn~q~YiLrAl~q~mlYvdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLL 190 (276)
.+....+..|||++ -| .+++++.-|-.+...+..-|-+.|...|
T Consensus 173 ~~VR~~A~~aLg~~-~~--------~~~~~~~~L~~~L~D~~~~VR~~A~~aL 216 (280)
T PRK09687 173 GDVRNWAAFALNSN-KY--------DNPDIREAFVAMLQDKNEEIRIEAIIGL 216 (280)
T ss_pred HHHHHHHHHHHhcC-CC--------CCHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 34455556666665 11 4566777776666666666666665555
No 25
>KOG1924|consensus
Probab=41.26 E-value=1.5e+02 Score=33.17 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=62.7
Q ss_pred HHhhHhheeeeeccch-hHHHHHHHHHhhccCCCCCchHHHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHH
Q psy8357 34 TALKLLLIFVEYVESN-CFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVD 112 (276)
Q Consensus 34 taLkLLlVfvey~e~n-~~lli~Av~~v~~~~g~~pws~lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d 112 (276)
.++|+|--||=-.|.| -.-+..|+.+.+.+...--+..|++=|. .+-+.-+.|-+|.+||--.....|=|-=--+.-
T Consensus 253 dvvkllsalciV~ee~~~ekvl~aiT~~ae~~~veRF~piv~gl~--~~e~~~l~vacmq~INal~t~p~dldfRlhlR~ 330 (1102)
T KOG1924|consen 253 DVVKLLSALCIVGEENGLEKVLEAITTIAEAKPVERFRPIVEGLD--FLEKQQLQVACMQFINALVTSPSDLDFRLHLRS 330 (1102)
T ss_pred HHHHHHHHHheeehhhHHHHHHHHHHHHHhhcchhhhhhHHHHHh--ccchHHHHHHHHHHHHHhcCCHHHhhHHHHHHH
Confidence 3556665444444455 7888999999999988888999999994 233888999999999976555444222222222
Q ss_pred HHHHhhHHHHHHhh
Q psy8357 113 ALEEQGIAAVIRSL 126 (276)
Q Consensus 113 ~Le~~Gme~i~~~~ 126 (276)
.+--.|+++.+..+
T Consensus 331 E~mr~gL~~~l~~l 344 (1102)
T KOG1924|consen 331 EFMRDGLHKYLPDL 344 (1102)
T ss_pred HHHHHhHHHHHHHh
Confidence 25566777777775
No 26
>PTZ00429 beta-adaptin; Provisional
Probab=35.97 E-value=1.6e+02 Score=31.78 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=42.5
Q ss_pred chhhhHHHHhhcCcchhHHHHHhhHhheeeeeccchhHHHHHHHHHhh-ccCCCCCchH--HHHhhcc
Q psy8357 14 PPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVD-NSNGEPPWSN--IMRLLTD 78 (276)
Q Consensus 14 ~~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n~~lli~Av~~v~-~~~g~~pws~--lm~lL~~ 78 (276)
...+..|+.|...+.-.|+-.|+.+|.-+.+.......+.+..+...- .-...-||.. ++++|..
T Consensus 178 ~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 178 QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAA 245 (746)
T ss_pred cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Confidence 345678899999999999999999988887765544445454444322 2244557874 3455543
No 27
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=35.84 E-value=6e+02 Score=27.56 Aligned_cols=207 Identities=17% Similarity=0.248 Sum_probs=0.0
Q ss_pred ccCchhhhHHHHhhcCcchhHHHHHhhHhheeeeeccchhHHHHHHHHHhhccCCCCCchHHHHhhccCCCCchHHHHHH
Q psy8357 11 MDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYA 90 (276)
Q Consensus 11 i~h~~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~~ds~D~Ellvya 90 (276)
|....+|.=|-.|..|+-.-+++.||++|+=+ -|..++.+.+++ .|.-| .++.+| .|....-+|
T Consensus 327 m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NL-Sfd~~~R~~mV~--------~GlIP--kLv~LL-----~d~~~~~va 390 (708)
T PF05804_consen 327 MAESGIVEKLLKLLPSENEDLVNVALRLLFNL-SFDPELRSQMVS--------LGLIP--KLVELL-----KDPNFREVA 390 (708)
T ss_pred HHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHh-CcCHHHHHHHHH--------CCCcH--HHHHHh-----CCCchHHHH
Q ss_pred HHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccchhhccChhHHHH
Q psy8357 91 MSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQW 170 (276)
Q Consensus 91 mTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~gvi~h~~tvqw 170 (276)
+.+ |..+...|...-+ .-....+..+++.+ ++.+....+.=.+.++.++-.+.--.+-+.+
T Consensus 391 l~i----Ly~LS~dd~~r~~--f~~TdcIp~L~~~L------l~~~~~~v~~eliaL~iNLa~~~rnaqlm~~------- 451 (708)
T PF05804_consen 391 LKI----LYNLSMDDEARSM--FAYTDCIPQLMQML------LENSEEEVQLELIALLINLALNKRNAQLMCE------- 451 (708)
T ss_pred HHH----HHHhccCHhhHHH--HhhcchHHHHHHHH------HhCCCccccHHHHHHHHHHhcCHHHHHHHHh-------
Q ss_pred HHHhhcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcC-----CCCCchH-HHHhhccCCCCchHHHHHHHHH
Q psy8357 171 LYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSN-----GEPPWSN-IMRLLTDRDSTDTELLIYAMSL 244 (276)
Q Consensus 171 LYsL~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~-----~~~pwsn-lm~lL~~~d~~D~E~~v~amTL 244 (276)
+..++..++.|++ +.-+++++-+++++... ...||-. +++++...+ +.|+.+-++-
T Consensus 452 -----g~gL~~L~~ra~~----------~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~--~ee~~vE~LG- 513 (708)
T PF05804_consen 452 -----GNGLQSLMKRALK----------TRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGD--SEEFVVECLG- 513 (708)
T ss_pred -----cCcHHHHHHHHHh----------cccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCC--cHHHHHHHHH-
Q ss_pred HHHHhcCCCCCchhhHHHHHHHHhhHHHHHh
Q psy8357 245 LNKTLNGIPDQDSYYDQVDALEEQGIAAVIR 275 (276)
Q Consensus 245 iNktL~~~pdqds~yd~~d~le~~Gme~i~~ 275 (276)
||++++-++. |-..-+++.++-..++
T Consensus 514 ---iLaNL~~~~l--d~~~ll~~~~llp~L~ 539 (708)
T PF05804_consen 514 ---ILANLTIPDL--DWAQLLQEYNLLPWLK 539 (708)
T ss_pred ---HHHhcccCCc--CHHHHHHhCCHHHHHH
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=33.83 E-value=2.4e+02 Score=27.23 Aligned_cols=226 Identities=15% Similarity=0.193 Sum_probs=106.5
Q ss_pred hhhhHHHHhhcCcchhHHHHHhhHhheeeeeccch-hHHHHHHHHHhhccC--CCCCchHHHHhhccCCCCchHHHHHHH
Q psy8357 15 PTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESN-CFLLIQAVHAVDNSN--GEPPWSNIMRLLTDRDSTDTELLIYAM 91 (276)
Q Consensus 15 ~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n-~~lli~Av~~v~~~~--g~~pws~lm~lL~~~ds~D~Ellvyam 91 (276)
++++-++.+..++. +.+.+...|.-|+..++.| -.+..+++..+.... .....+..+..+. .+.|..+...++
T Consensus 250 e~~~~i~~l~~~~~--~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~--~~~d~~Ir~~~l 325 (526)
T PF01602_consen 250 EAIRLIIKLSPSPE--LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLL--YDDDPSIRKKAL 325 (526)
T ss_dssp HHHHHHHHHSSSHH--HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHH--CSSSHHHHHHHH
T ss_pred HHHHHHHHhhcchH--HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheec--CCCChhHHHHHH
Confidence 34444555554444 6666667777776666665 444555565554443 1123333344442 246777887777
Q ss_pred HHHHHhhCCCCCCchhhHHHHHHHHhhH---H-----HHHHhhh----hcCC--c---------cccCCCCCCchhhhhh
Q psy8357 92 SLLNKTLNGIPDQDSYYDQVDALEEQGI---A-----AVIRSLD----QHGI--K---------YTTSSTDLPTEPLVAL 148 (276)
Q Consensus 92 TLiNktL~~lpDqDs~yD~~d~Le~~Gm---e-----~i~~~~~----~~~~--~---------~~~~~tn~q~YiLrAl 148 (276)
.++=+.+ ++.+..++++.|...-- + .+++... +... + +..++.....-+...+
T Consensus 326 ~lL~~l~----~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i 401 (526)
T PF01602_consen 326 DLLYKLA----NESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVI 401 (526)
T ss_dssp HHHHHH------HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHH
T ss_pred HHHhhcc----cccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHH
Confidence 7655544 24444444444332210 0 0000000 0000 0 1111222222222222
Q ss_pred cchhhecccchhhccChhHHHHHHHhhcC-CchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhh
Q psy8357 149 GQVMLYVDGMTGIMDHPPTVQWLYVLVAS-KFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLL 227 (276)
Q Consensus 149 ~q~mlYvdGM~gvi~h~~tvqwLYsL~~S-~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL 227 (276)
.+++.-.++. +..+++.|+.+..+ ....+.+.++-++=-|+++.++ .+ ....+++.+
T Consensus 402 ~~ll~~~~~~-----~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~---------------~~--~~~~~~~~l 459 (526)
T PF01602_consen 402 RDLLSNNPEL-----REKILKKLIELLEDISSPEALAAAIWILGEYGELIEN---------------TE--SAPDILRSL 459 (526)
T ss_dssp HHHHHHSTTT-----HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT---------------TT--HHHHHHHHH
T ss_pred HHHhhcChhh-----hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc---------------cc--cHHHHHHHH
Confidence 2222221111 23356666666655 3333444444444333333332 00 122222222
Q ss_pred ccC-CCCchHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhhH
Q psy8357 228 TDR-DSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGI 270 (276)
Q Consensus 228 ~~~-d~~D~E~~v~amTLiNktL~~~pdqds~yd~~d~le~~Gm 270 (276)
.+. -..+.+++...+|.+=|.....|+++..-.+.+.++...-
T Consensus 460 ~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~ 503 (526)
T PF01602_consen 460 IENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLAT 503 (526)
T ss_dssp HHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHH
T ss_pred HHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhc
Confidence 221 1246789999999999999999987766677666665554
No 29
>KOG3175|consensus
Probab=28.14 E-value=26 Score=34.96 Aligned_cols=38 Identities=32% Similarity=0.330 Sum_probs=33.4
Q ss_pred hhhhcchhhecccchhhccChhHHHHHHHhhcCCchhHHHH
Q psy8357 145 LVALGQVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKT 185 (276)
Q Consensus 145 LrAl~q~mlYvdGM~gvi~h~~tvqwLYsL~~S~~rlVvKt 185 (276)
-++-.|+..-++||||+ +-++||+.+|+--++++|-++
T Consensus 73 ~~~k~~~~~~~~~~n~~---~~t~~~~~e~li~p~~nv~~~ 110 (366)
T KOG3175|consen 73 DEMKERILKIVTGFNGI---PFTIQRLCELLIDPRRNVTGT 110 (366)
T ss_pred HHHHHhhhhhhhhccCC---CHHHHHHHHHhcCcccccCcc
Confidence 46778999999999998 789999999999999998654
No 30
>PF13221 DUF4029: Protein of unknown function (DUF4029)
Probab=26.49 E-value=31 Score=27.96 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=27.8
Q ss_pred cCchhhhHHHHhhcCcchhHHHHHhhHhheee
Q psy8357 12 DHPPTVQWLYVLVASKFRLVIKTALKLLLIFV 43 (276)
Q Consensus 12 ~h~~tiqwLy~L~~S~~rlVvKtaLkLLlVfv 43 (276)
--||..||+++..--++..++-.+.-.-.|||
T Consensus 48 llnelf~wi~sf~l~k~gnivlq~icayivfv 79 (96)
T PF13221_consen 48 LLNELFQWIHSFELMKLGNIVLQVICAYIVFV 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999998888888875
No 31
>PF14904 FAM86: Family of unknown function
Probab=26.25 E-value=1.5e+02 Score=24.67 Aligned_cols=53 Identities=26% Similarity=0.368 Sum_probs=34.9
Q ss_pred HHHHHHHHH--hhccC-CCCCchHHHHhhccCCCCchHHHHHHHHHHHHh-----hCCCCCCchhh
Q psy8357 51 FLLIQAVHA--VDNSN-GEPPWSNIMRLLTDRDSTDTELLIYAMSLLNKT-----LNGIPDQDSYY 108 (276)
Q Consensus 51 ~lli~Av~~--v~~~~-g~~pws~lm~lL~~~ds~D~EllvyamTLiNkt-----L~~lpDqDs~y 108 (276)
..+++.++. .+-.+ ..-||.++-+.|. +|+|.|++-- ++.+| +..-|-+.+|.
T Consensus 10 ~~~l~~f~~~FlA~~~l~sfpW~~Le~~L~--~s~~sel~~~---IL~~Tv~HPlc~k~Pps~kY~ 70 (100)
T PF14904_consen 10 EDLLQEFQRRFLAMRPLRSFPWQSLEEKLR--ESSDSELQLD---ILQKTVKHPLCVKYPPSVKYR 70 (100)
T ss_pred HHHHHHHHHHHhhcccccCCCCccHHHHhc--CCCcHHHHHH---HHHHHhcCcchhhCCCchhHH
Confidence 344455444 33333 6789999999996 6889998763 34555 55666666665
No 32
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=25.30 E-value=2e+02 Score=28.46 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=30.7
Q ss_pred CchHHHHHHHHHhhhcCCCCCchH-HHHhhccCCCCchHHHH
Q psy8357 199 SNCFLLIQAVHAVDNSNGEPPWSN-IMRLLTDRDSTDTELLI 239 (276)
Q Consensus 199 ~n~~l~~~Av~~v~~~~~~~pwsn-lm~lL~~~d~~D~E~~v 239 (276)
.+..++.-.+++.+.+.....-.. +-++|.+..++|.|+++
T Consensus 228 ~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~~~~~~~e~Li 269 (340)
T PF12069_consen 228 PDLELLSALLRALSSAPASDLVAILIDALLQSPRLCHPEVLI 269 (340)
T ss_pred CCHHHHHHHHHHHcCCCchhHHHHHHHHHhcCcccCChHHHH
Confidence 456677777777777776666666 77888888888999876
No 33
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=23.89 E-value=2.1e+02 Score=24.25 Aligned_cols=85 Identities=16% Similarity=0.275 Sum_probs=52.6
Q ss_pred CCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchH--HHHhhccCCCCchHHHHHHHHHHHH---HhcC
Q psy8357 177 SKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSN--IMRLLTDRDSTDTELLIYAMSLLNK---TLNG 251 (276)
Q Consensus 177 S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsn--lm~lL~~~d~~D~E~~v~amTLiNk---tL~~ 251 (276)
++...|+..||.||=.+++=.+ .-++.-|- .+-|-+ +++++..+...+.++.--.+.||-. .+.+
T Consensus 50 ~~n~~v~l~aL~LLe~~vkNCG---~~fh~eia-------sk~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (141)
T cd03565 50 NKNHKEVMLTLTVLETCVKNCG---HRFHVLVA-------KKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRG 119 (141)
T ss_pred CCCHHHHHHHHHHHHHHHHHcc---HHHHHHHH-------HHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 4556678888888766654332 24444331 123333 6788864443556777666666644 4556
Q ss_pred CCCCchhhHHHHHHHHhhHH
Q psy8357 252 IPDQDSYYDQVDALEEQGIA 271 (276)
Q Consensus 252 ~pdqds~yd~~d~le~~Gme 271 (276)
-|+-..++++-..|..+|++
T Consensus 120 ~~~l~~i~~~y~~L~~~G~~ 139 (141)
T cd03565 120 SPDLTGVVEVYEELKKKGIE 139 (141)
T ss_pred CccchHHHHHHHHHHHcCCC
Confidence 66667788888888888863
No 34
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=21.59 E-value=1.2e+02 Score=25.68 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=43.7
Q ss_pred cccCCCCCCchhhhhhcchhhe-cccchhhccChhHHHHHHHhhcC-CchhHHHHHHhhheee
Q psy8357 133 YTTSSTDLPTEPLVALGQVMLY-VDGMTGIMDHPPTVQWLYVLVAS-KFRLVIKTALKLLLIF 193 (276)
Q Consensus 133 ~~~~~tn~q~YiLrAl~q~mlY-vdGM~gvi~h~~tvqwLYsL~~S-~~rlVvKtaLkLLlVf 193 (276)
+.....+.|.|+|..|..|+-= -+.++.-+...+.++.|..++.. ....|.+.+|+++--.
T Consensus 50 l~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W 112 (142)
T cd03569 50 LLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAW 112 (142)
T ss_pred HcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHH
Confidence 3445678888888888887764 34566778888888989888874 4466777777776544
No 35
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=20.21 E-value=1.4e+02 Score=27.79 Aligned_cols=48 Identities=27% Similarity=0.474 Sum_probs=37.1
Q ss_pred hHHHHhhccCCCCchHHHHHHHHHHHH---------hhCCCCCCchhhHHHHHHHHhhH
Q psy8357 70 SNIMRLLTDRDSTDTELLIYAMSLLNK---------TLNGIPDQDSYYDQVDALEEQGI 119 (276)
Q Consensus 70 s~lm~lL~~~ds~D~EllvyamTLiNk---------tL~~lpDqDs~yD~~d~Le~~Gm 119 (276)
.++++.|++-.=++-|..+|+ +|++. ..+++| |-.-||+...||.-|.
T Consensus 3 ~~~~~~L~~lGlt~yEa~vY~-aLl~~g~~tA~eis~~sgvP-~~kvY~vl~sLe~kG~ 59 (247)
T COG1378 3 EELEENLQKLGLTEYEAKVYL-ALLCLGEATAKEISEASGVP-RPKVYDVLRSLEKKGL 59 (247)
T ss_pred hHHHHHHHHcCCCHHHHHHHH-HHHHhCCccHHHHHHHcCCC-chhHHHHHHHHHHCCC
Confidence 356777877777899999995 44552 178899 8999999888888775
No 36
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=20.02 E-value=58 Score=24.64 Aligned_cols=32 Identities=13% Similarity=0.305 Sum_probs=28.7
Q ss_pred CCchHHHHhhccCCCCchHHHHHHHHHHHHHh
Q psy8357 218 PPWSNIMRLLTDRDSTDTELLIYAMSLLNKTL 249 (276)
Q Consensus 218 ~pwsnlm~lL~~~d~~D~E~~v~amTLiNktL 249 (276)
-|+..+.++.+.|+.++.-...+.++++|..+
T Consensus 17 spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~ 48 (87)
T PF03083_consen 17 SPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVL 48 (87)
T ss_pred HHHHHHHHHHhCCCCCccceehhHHHhhhccH
Confidence 48889999999999999999999999999863
Done!