Query psy8357
Match_columns 276
No_of_seqs 101 out of 116
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 16:37:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dad_A FH1/FH2 domain-containi 100.0 1.5E-47 5.3E-52 360.5 10.4 160 110-276 153-312 (339)
2 3dad_A FH1/FH2 domain-containi 100.0 3E-43 1E-47 331.4 5.6 146 1-157 188-333 (339)
3 3eg5_B Protein diaphanous homo 99.8 4.6E-20 1.6E-24 174.0 8.3 185 84-275 81-271 (383)
4 2f31_A Diaphanous protein homo 99.7 6E-17 2.1E-21 142.4 7.2 187 82-275 13-205 (233)
5 3eg5_B Protein diaphanous homo 99.6 5.1E-16 1.8E-20 146.5 9.1 212 1-250 148-362 (383)
6 2bnx_A Diaphanous protein homo 99.6 1.7E-15 5.8E-20 142.9 8.0 194 73-275 10-209 (386)
7 2f31_A Diaphanous protein homo 99.3 1E-11 3.6E-16 109.0 8.8 144 1-159 82-227 (233)
8 2bnx_A Diaphanous protein homo 99.2 6E-11 2E-15 111.9 8.8 144 1-159 86-231 (386)
9 4hxt_A De novo protein OR329; 97.4 0.001 3.5E-08 54.1 9.3 205 15-257 44-248 (252)
10 4db8_A Armadillo-repeat protei 96.4 0.0052 1.8E-07 50.7 6.2 194 15-246 54-247 (252)
11 4hxt_A De novo protein OR329; 96.3 0.0064 2.2E-07 49.4 6.0 198 16-251 3-200 (252)
12 4db6_A Armadillo repeat protei 96.3 0.0072 2.4E-07 48.6 6.2 198 13-248 10-207 (210)
13 4db8_A Armadillo-repeat protei 96.1 0.065 2.2E-06 44.0 11.0 204 12-253 9-212 (252)
14 4db6_A Armadillo repeat protei 95.0 0.077 2.6E-06 42.5 7.5 154 16-194 55-208 (210)
15 3tpo_A Importin subunit alpha- 94.3 0.088 3E-06 49.6 7.3 176 69-272 295-472 (529)
16 4b8j_A Importin subunit alpha- 93.2 0.24 8.2E-06 45.7 8.0 156 69-254 288-447 (528)
17 2jdq_A Importin alpha-1 subuni 93.1 0.33 1.1E-05 42.8 8.3 155 69-253 236-393 (450)
18 3ul1_B Importin subunit alpha- 93.0 0.15 5.3E-06 47.9 6.4 168 70-269 277-449 (510)
19 1wa5_B Importin alpha subunit; 92.5 0.45 1.6E-05 44.1 8.8 155 69-251 259-413 (530)
20 4b8j_A Importin subunit alpha- 92.0 0.32 1.1E-05 44.9 7.0 156 69-251 204-359 (528)
21 1wa5_B Importin alpha subunit; 90.5 1.2 4.1E-05 41.2 9.4 160 69-254 301-461 (530)
22 2jdq_A Importin alpha-1 subuni 90.5 2.7 9.3E-05 36.9 11.2 204 12-253 61-266 (450)
23 3ltm_A Alpha-REP4; protein eng 90.4 3 0.0001 33.4 10.5 178 10-248 14-201 (211)
24 2z6h_A Catenin beta-1, beta-ca 87.3 3.6 0.00012 39.4 10.4 143 13-180 12-154 (644)
25 3tpo_A Importin subunit alpha- 85.9 3 0.0001 39.2 8.9 202 16-253 163-367 (529)
26 3ltj_A Alpharep-4; protein eng 85.8 6.4 0.00022 31.2 9.7 85 9-96 8-102 (201)
27 3b2a_A TON_1937, putative unch 85.2 2.3 8E-05 39.2 7.5 140 71-251 79-219 (265)
28 3ltj_A Alpharep-4; protein eng 84.3 11 0.00037 29.8 10.4 48 46-96 24-71 (201)
29 3ltm_A Alpha-REP4; protein eng 84.3 7.1 0.00024 31.2 9.3 150 11-197 46-205 (211)
30 1jdh_A Beta-catenin; beta-cate 81.6 16 0.00054 32.9 11.4 144 14-182 16-159 (529)
31 1xqr_A HSPBP1 protein; armadil 81.1 3.6 0.00012 36.9 7.0 181 34-253 59-241 (296)
32 2z6g_A B-catenin; FULL-length, 78.9 7.3 0.00025 39.0 9.0 101 70-185 195-295 (780)
33 1xm9_A Plakophilin 1; armadill 76.3 24 0.00083 32.6 11.2 170 13-198 281-452 (457)
34 1jdh_A Beta-catenin; beta-cate 74.9 11 0.00039 33.8 8.4 143 15-178 266-409 (529)
35 3ul1_B Importin subunit alpha- 73.9 13 0.00045 34.7 8.9 203 13-250 272-478 (510)
36 3nmw_A APC variant protein; AR 68.7 11 0.00039 34.4 7.1 160 71-255 174-339 (354)
37 3now_A UNC-45 protein, SD10334 62.1 13 0.00046 38.4 6.7 135 114-274 620-755 (810)
38 1w63_A Adapter-related protein 60.5 1.2E+02 0.0042 29.1 14.1 64 133-207 322-389 (618)
39 1xqr_A HSPBP1 protein; armadil 59.5 3.1 0.00011 37.3 1.4 147 81-253 51-199 (296)
40 2vgl_B AP-2 complex subunit be 54.7 67 0.0023 30.6 9.8 32 69-103 161-193 (591)
41 2vgl_B AP-2 complex subunit be 54.1 30 0.001 33.0 7.3 33 15-47 160-192 (591)
42 3now_A UNC-45 protein, SD10334 52.5 10 0.00034 39.3 3.9 166 9-196 284-451 (810)
43 3nmw_A APC variant protein; AR 50.1 18 0.00061 33.1 4.8 151 71-247 131-289 (354)
44 1xm9_A Plakophilin 1; armadill 47.3 45 0.0015 30.7 7.1 119 71-205 6-125 (457)
45 2z6g_A B-catenin; FULL-length, 44.8 13 0.00046 37.1 3.3 120 68-203 151-271 (780)
46 3nmz_A APC variant protein; pr 43.9 25 0.00087 33.5 5.0 150 71-246 247-404 (458)
47 2bpt_A Importin beta-1 subunit 39.1 55 0.0019 31.3 6.5 118 68-195 131-253 (861)
48 4fdd_A Transportin-1; heat rep 38.4 59 0.002 31.9 6.7 160 12-196 125-286 (852)
49 2x19_B Importin-13; nuclear tr 36.3 3E+02 0.01 27.2 11.4 107 67-195 57-175 (963)
50 2z6h_A Catenin beta-1, beta-ca 35.5 23 0.00078 33.9 3.2 114 69-198 16-130 (644)
51 2vgl_A Adaptor protein complex 34.9 3E+02 0.01 26.7 11.1 188 13-213 185-414 (621)
52 3nmz_A APC variant protein; pr 33.6 88 0.003 29.8 7.0 162 71-259 290-457 (458)
53 1oyz_A Hypothetical protein YI 30.2 2.3E+02 0.0078 23.3 9.4 28 164-191 190-217 (280)
54 1b3u_A Protein (protein phosph 30.0 2.3E+02 0.008 25.4 8.8 232 14-268 48-332 (588)
55 4fdd_A Transportin-1; heat rep 28.6 2.5E+02 0.0085 27.5 9.3 193 14-253 9-206 (852)
56 3l6x_A Catenin delta-1; cateni 27.5 20 0.00067 35.7 1.3 117 72-198 360-479 (584)
57 1juq_A ADP-ribosylation factor 27.4 65 0.0022 26.9 4.4 60 134-193 60-126 (171)
58 2vgl_A Adaptor protein complex 27.2 1.8E+02 0.0063 28.2 8.1 79 30-114 325-409 (621)
59 1qgr_A Protein (importin beta 25.4 4.4E+02 0.015 25.1 11.3 161 12-196 125-289 (876)
60 1oyz_A Hypothetical protein YI 25.0 79 0.0027 26.1 4.4 25 15-39 23-47 (280)
61 1qgr_A Protein (importin beta 22.4 2.4E+02 0.0082 26.9 7.8 117 69-197 37-161 (876)
62 3g2s_A C-terminal fragment of 21.2 1.4E+02 0.0047 24.5 5.1 88 174-271 56-147 (149)
63 1u6g_C TIP120 protein, CAND1; 20.9 3.5E+02 0.012 27.7 9.0 189 14-255 5-209 (1230)
No 1
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-47 Score=360.51 Aligned_cols=160 Identities=48% Similarity=0.864 Sum_probs=155.2
Q ss_pred HHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccchhhccChhHHHHHHHhhcCCchhHHHHHHhh
Q psy8357 110 QVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKL 189 (276)
Q Consensus 110 ~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkL 189 (276)
+-..++..|+..+++. .+.+++|+|+|+|||++|+|.||||||||++||++|+|||++++|++++|||+||+|
T Consensus 153 a~EFI~~~GL~~Li~v-------i~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~L 225 (339)
T 3dad_A 153 VPEFVHSEGLSCLIRV-------GAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKL 225 (339)
T ss_dssp HHHHHHTTHHHHHHHH-------HTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHH-------HHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 5568999999999998 466799999999999999999999999999999999999999999999999999999
Q ss_pred heeeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhhccCCCCchHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhh
Q psy8357 190 LLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQG 269 (276)
Q Consensus 190 LlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL~~~d~~D~E~~v~amTLiNktL~~~pdqds~yd~~d~le~~G 269 (276)
|+|||+|+|+|++++++||+++++++|.|||+|+|++|+|+|++|+|+++|||||||++|+++||+|+|||++|+||++|
T Consensus 226 L~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~g 305 (339)
T 3dad_A 226 LLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQG 305 (339)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhC
Q psy8357 270 IAAVIRR 276 (276)
Q Consensus 270 me~i~~r 276 (276)
|+++++|
T Consensus 306 i~~~i~r 312 (339)
T 3dad_A 306 MEALVQR 312 (339)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 2
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=100.00 E-value=3e-43 Score=331.37 Aligned_cols=146 Identities=51% Similarity=0.903 Sum_probs=139.3
Q ss_pred CceeccccccccCchhhhHHHHhhcCcchhHHHHHhhHhheeeeeccchhHHHHHHHHHhhccCCCCCchHHHHhhccCC
Q psy8357 1 MLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRD 80 (276)
Q Consensus 1 mlyVDGM~gvi~h~~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~~d 80 (276)
|+||||||||++||++|||||++++|++|+|||+||+||+|||||+|+|++++++||+++++++|.|||+++|++|.|+|
T Consensus 188 M~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~ 267 (339)
T 3dad_A 188 MLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKN 267 (339)
T ss_dssp TTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTT
T ss_pred HhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhheccc
Q psy8357 81 STDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDG 157 (276)
Q Consensus 81 s~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdG 157 (276)
++|+|+++|||||||++|+++||+|+|||++|+||++||+.+++++ +++.+++.+ -.+|+-+|+.+
T Consensus 268 ~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~------l~~~~~~~~-----l~~Ql~iyE~~ 333 (339)
T 3dad_A 268 GADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRH------LGTAGTDVD-----LRTQLVLYENA 333 (339)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHH------HSCTTSCHH-----HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHH------HhccCCCHH-----HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997 666777754 25899998764
No 3
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=99.80 E-value=4.6e-20 Score=174.00 Aligned_cols=185 Identities=15% Similarity=0.169 Sum_probs=152.0
Q ss_pred hHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhh---cCCc-cccCCCCCCchhhhhhcchhhecccch
Q psy8357 84 TELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQ---HGIK-YTTSSTDLPTEPLVALGQVMLYVDGMT 159 (276)
Q Consensus 84 ~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~---~~~~-~~~~~tn~q~YiLrAl~q~mlYvdGM~ 159 (276)
.+-++-.+.-+-+.|..-|- +-++.+..+|+..++.-+.+ ++.+ ......+.|.|++++++++|-|..||+
T Consensus 81 ~~kl~~~L~sL~v~Lrt~~~-----sWV~~F~~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~ 155 (383)
T 3eg5_B 81 DMHLLSCLESLRVSLTSHPV-----SWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIK 155 (383)
T ss_dssp HHHHHHHHHHHHHHHHHSCH-----HHHHHHHHHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHH
T ss_pred chhHHHHHHHHHHHHhhCcc-----HHHHHHHHccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHH
Confidence 33333445556666755442 22333347788887776542 2211 012334678899999999999999999
Q ss_pred hhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeecc-Cc-hHHHHHHHHHhhhcCCCCCchHHHHhhccCCCCchHH
Q psy8357 160 GIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVE-SN-CFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTEL 237 (276)
Q Consensus 160 gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~e-~n-~~l~~~Av~~v~~~~~~~pwsnlm~lL~~~d~~D~E~ 237 (276)
.|++||+.|+||+..++|+.+.|.++|+|||.++|.|.+ .| +..+++|+..++..++..+|+++|+.|+ ++.+.|+
T Consensus 156 ~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~--~~~~~e~ 233 (383)
T 3eg5_B 156 TMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK--SGTSIAL 233 (383)
T ss_dssp HHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS--TTSCHHH
T ss_pred HHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH--ccCcHHH
Confidence 999999999999999999999999999999999999997 66 8899999999999999999999999997 3479999
Q ss_pred HHHHHHHHHHHhcCCCCCchhhHHHHHHHHhhHHHHHh
Q psy8357 238 LIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIR 275 (276)
Q Consensus 238 ~v~amTLiNktL~~~pdqds~yd~~d~le~~Gme~i~~ 275 (276)
++++|+|||..+++.||.+..+.+...|+.+||+++++
T Consensus 234 ~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~ 271 (383)
T 3eg5_B 234 KVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQ 271 (383)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHH
Confidence 99999999999999999999999999999999999986
No 4
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=99.67 E-value=6e-17 Score=142.38 Aligned_cols=187 Identities=15% Similarity=0.163 Sum_probs=151.4
Q ss_pred CchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCcccc----CCCCCCchhhhhhcchhheccc
Q psy8357 82 TDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTT----SSTDLPTEPLVALGQVMLYVDG 157 (276)
Q Consensus 82 ~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~----~~tn~q~YiLrAl~q~mlYvdG 157 (276)
...|-++-.+.-+...|..=|- +-++..+.+|++.++.-+.+..-+-.. ...+.+.++++.++++|-+..|
T Consensus 13 ~~~~~~~~~L~~L~v~Lrt~~~-----~Wv~~F~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G 87 (233)
T 2f31_A 13 LRDMHLLSCLESLRVSLNNNPV-----SWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFG 87 (233)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCH-----HHHHHHHHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHH
T ss_pred cchHHHHHHHHHHhHhHhcCCc-----HHHHHHHHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHH
Confidence 3444444444445566665552 233334578988887775432110011 1235578999999999999999
Q ss_pred chhhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeecc-Cc-hHHHHHHHHHhhhcCCCCCchHHHHhhccCCCCch
Q psy8357 158 MTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVE-SN-CFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDT 235 (276)
Q Consensus 158 M~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~e-~n-~~l~~~Av~~v~~~~~~~pwsnlm~lL~~~d~~D~ 235 (276)
++.|++||+.|.+|....+|+...+.+.|+|||.++|.|.+ ++ +..+.+|+..+...++..+|+.+|+-|. ++.+.
T Consensus 88 ~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~--~~~~~ 165 (233)
T 2f31_A 88 IKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK--SGTSI 165 (233)
T ss_dssp HHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTS--TTSCH
T ss_pred HHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHh--cCChH
Confidence 99999999999999999999999999999999999999998 46 7899999999888888899999999996 46799
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhhHHHHHh
Q psy8357 236 ELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIR 275 (276)
Q Consensus 236 E~~v~amTLiNktL~~~pdqds~yd~~d~le~~Gme~i~~ 275 (276)
|.++.+|+|||..+++.||.+....+...+...|++++++
T Consensus 166 e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~ 205 (233)
T 2f31_A 166 ALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQ 205 (233)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHH
Confidence 9999999999999999999999999999999999999986
No 5
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=99.63 E-value=5.1e-16 Score=146.46 Aligned_cols=212 Identities=15% Similarity=0.128 Sum_probs=160.3
Q ss_pred CceeccccccccCchhhhHHHHhhcCcchhHHHHHhhHhheeeeecc-ch-hHHHHHHHHHhhccCCCCCchHHHHhhcc
Q psy8357 1 MLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVE-SN-CFLLIQAVHAVDNSNGEPPWSNIMRLLTD 78 (276)
Q Consensus 1 mlyVDGM~gvi~h~~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e-~n-~~lli~Av~~v~~~~g~~pws~lm~lL~~ 78 (276)
|-+.+||++|++|+++|+||+..++|+...+.+.|+|||.++|.|.+ .| +..+++|+..+...++..+|+++|+.|.
T Consensus 148 mN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~- 226 (383)
T 3eg5_B 148 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK- 226 (383)
T ss_dssp TSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS-
T ss_pred hcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH-
Confidence 56789999999999999999999999999999999999999999997 77 9999999999999999999999999995
Q ss_pred CCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccc
Q psy8357 79 RDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGM 158 (276)
Q Consensus 79 ~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM 158 (276)
++.+.|+.+.+|+|||..+++.||.+..+.+...++..|++++++++++. ++. -| ..|+-.|.+.+
T Consensus 227 -~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~--------~~~---~L--~~Qi~~fe~~~ 292 (383)
T 3eg5_B 227 -SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREI--------ENE---DM--KVQLCVFDEQG 292 (383)
T ss_dssp -TTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTS--------CCH---HH--HHHHHHHHHHH
T ss_pred -ccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcC--------CCh---hH--HHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999997321 121 23 37888888755
Q ss_pred hhhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHH-hhhcCCCCCchHHHHhhccCCCCchHH
Q psy8357 159 TGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHA-VDNSNGEPPWSNIMRLLTDRDSTDTEL 237 (276)
Q Consensus 159 ~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~-v~~~~~~~pwsnlm~lL~~~d~~D~E~ 237 (276)
+.=. .+..+ -|. . ++ +|++ +..-+.+++.+ +..++..+++-++++-|--.. .|.+.
T Consensus 293 ~eD~--~el~~-r~~-------~-~~---------~d~~--d~~~~~~~l~~~~~~t~a~~~flSiLQhLlli~-~d~~~ 349 (383)
T 3eg5_B 293 DEDF--FDLKG-RLD-------D-IR---------MEMD--DFGEVFQIILNTVKDSKAEPHFLSILQHLLLVR-NDYEA 349 (383)
T ss_dssp HHHH--HHHHH-HHH-------H-HH---------HHCC--SHHHHHHHHHHHTTTSTTHHHHHHHHHHTTCSC-SSCTT
T ss_pred HHhH--HHHHh-hcc-------c-cC---------cCcC--CHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-CCchh
Confidence 3322 11111 111 1 11 3443 33444555444 333444455556655443222 36667
Q ss_pred HHHHHHHHHHHhc
Q psy8357 238 LIYAMSLLNKTLN 250 (276)
Q Consensus 238 ~v~amTLiNktL~ 250 (276)
.+--+.||...+.
T Consensus 350 ~~~~~~Lid~~v~ 362 (383)
T 3eg5_B 350 RPQYYKLIEECVS 362 (383)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777778887765
No 6
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=99.58 E-value=1.7e-15 Score=142.87 Aligned_cols=194 Identities=15% Similarity=0.167 Sum_probs=153.4
Q ss_pred HHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCcccc----CCCCCCchhhhhh
Q psy8357 73 MRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTT----SSTDLPTEPLVAL 148 (276)
Q Consensus 73 m~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~----~~tn~q~YiLrAl 148 (276)
++-|.+ ....+-++-.+.-+-..|..-|- +-++..+.+|+..++..+.+..-+-.. ...+.+.++++++
T Consensus 10 v~~L~~--~~~~~~~~~~L~~L~v~Lrt~~~-----~Wv~~F~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CL 82 (386)
T 2bnx_A 10 IQELRS--GLRDMHLLSCLESLRVSLNNNPV-----SWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCL 82 (386)
T ss_dssp HHHHTS--CCCHHHHHHHHHHHHHHHHHSCH-----HHHHHHHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHh--ccchHHHHHHHHHHhHHHhcCCc-----HHHHHHHHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 444533 23444333334445555655552 233333578998888776432110011 1234578999999
Q ss_pred cchhhecccchhhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeeccC-c-hHHHHHHHHHhhhcCCCCCchHHHHh
Q psy8357 149 GQVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVES-N-CFLLIQAVHAVDNSNGEPPWSNIMRL 226 (276)
Q Consensus 149 ~q~mlYvdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~e~-n-~~l~~~Av~~v~~~~~~~pwsnlm~l 226 (276)
+++|-+..|++.|++||+.|.+|....+|+...+.+.|++||.++|.+.+. + +..+++|+..+...++..+|+.+|+-
T Consensus 83 kalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~ 162 (386)
T 2bnx_A 83 KAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDG 162 (386)
T ss_dssp HHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999985 4 77899999998877888999999999
Q ss_pred hccCCCCchHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhhHHHHHh
Q psy8357 227 LTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIR 275 (276)
Q Consensus 227 L~~~d~~D~E~~v~amTLiNktL~~~pdqds~yd~~d~le~~Gme~i~~ 275 (276)
|. ++.+.|+++.+|+|||..+++.||.+....+...|...|++++++
T Consensus 163 l~--~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~ 209 (386)
T 2bnx_A 163 LK--SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQ 209 (386)
T ss_dssp TS--TTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHH
T ss_pred HH--cCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHH
Confidence 96 577999999999999999999999999999999999999999875
No 7
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=99.26 E-value=1e-11 Score=109.03 Aligned_cols=144 Identities=13% Similarity=0.140 Sum_probs=124.6
Q ss_pred CceeccccccccCchhhhHHHHhhcCcchhHHHHHhhHhheeeeecc-ch-hHHHHHHHHHhhccCCCCCchHHHHhhcc
Q psy8357 1 MLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVE-SN-CFLLIQAVHAVDNSNGEPPWSNIMRLLTD 78 (276)
Q Consensus 1 mlyVDGM~gvi~h~~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e-~n-~~lli~Av~~v~~~~g~~pws~lm~lL~~ 78 (276)
|-+-.|++.|++|++.|.+|....+|+...+.+.|++||.++|.|++ +. +..+++|+......++..+|..+|+-|.
T Consensus 82 mn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~- 160 (233)
T 2f31_A 82 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK- 160 (233)
T ss_dssp TSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTS-
T ss_pred hCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHh-
Confidence 34567999999999999999999999999999999999999999998 46 9999999999887788899999999995
Q ss_pred CCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccc
Q psy8357 79 RDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGM 158 (276)
Q Consensus 79 ~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM 158 (276)
++.+.|+.+.+|++||..+++.||-+.-..+...+...|++++++.+.+.+ +. -|. .|+-.|.+-+
T Consensus 161 -~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~--------~~---~L~--~Qi~~fe~~~ 226 (233)
T 2f31_A 161 -SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE--------NE---DMK--VQLCVFDEQG 226 (233)
T ss_dssp -TTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCC--------CH---HHH--HHHHHHHHHH
T ss_pred -cCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccC--------CH---HHH--HHHHHHHHHH
Confidence 467999999999999999999999899999999999999999999974321 21 233 7777777654
Q ss_pred h
Q psy8357 159 T 159 (276)
Q Consensus 159 ~ 159 (276)
+
T Consensus 227 ~ 227 (233)
T 2f31_A 227 D 227 (233)
T ss_dssp H
T ss_pred H
Confidence 3
No 8
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=99.16 E-value=6e-11 Score=111.94 Aligned_cols=144 Identities=13% Similarity=0.137 Sum_probs=126.0
Q ss_pred CceeccccccccCchhhhHHHHhhcCcchhHHHHHhhHhheeeeeccch--hHHHHHHHHHhhccCCCCCchHHHHhhcc
Q psy8357 1 MLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESN--CFLLIQAVHAVDNSNGEPPWSNIMRLLTD 78 (276)
Q Consensus 1 mlyVDGM~gvi~h~~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n--~~lli~Av~~v~~~~g~~pws~lm~lL~~ 78 (276)
|=+-.|++.|++|+..|.+|+...+|+...+.+.+++||.++|-|.+.| +..+++|+......++..+|..+|+-|.
T Consensus 86 mN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~- 164 (386)
T 2bnx_A 86 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK- 164 (386)
T ss_dssp TSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTS-
T ss_pred hCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHH-
Confidence 3456799999999999999999999999999999999999999999854 8999999999887788899999999995
Q ss_pred CCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccc
Q psy8357 79 RDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGM 158 (276)
Q Consensus 79 ~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM 158 (276)
++.+.|+.+.+|+|||..+++.||-+.-..+...+...|++.++.++++.+ +. .| ..|+-.|.+-+
T Consensus 165 -~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~--------~~---~L--~~Qi~~fe~~~ 230 (386)
T 2bnx_A 165 -SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE--------NE---DM--KVQLCVFDEQG 230 (386)
T ss_dssp -TTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCC--------CH---HH--HHHHHHHHHHH
T ss_pred -cCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccC--------Ch---hH--HHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999973321 11 23 37888888776
Q ss_pred h
Q psy8357 159 T 159 (276)
Q Consensus 159 ~ 159 (276)
+
T Consensus 231 ~ 231 (386)
T 2bnx_A 231 D 231 (386)
T ss_dssp H
T ss_pred H
Confidence 4
No 9
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.35 E-value=0.001 Score=54.12 Aligned_cols=205 Identities=23% Similarity=0.184 Sum_probs=138.3
Q ss_pred hhhhHHHHhhcCcchhHHHHHhhHhheeeeeccchhHHHHHHHHHhhccCCCCCchHHHHhhccCCCCchHHHHHHHHHH
Q psy8357 15 PTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLL 94 (276)
Q Consensus 15 ~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~~ds~D~EllvyamTLi 94 (276)
..+.-|..+..++..-|...|+..|--+....+.+...++++ | -...++++|. ++|.++...|...+
T Consensus 44 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--------~--~i~~l~~ll~---~~~~~v~~~a~~~L 110 (252)
T 4hxt_A 44 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA--------G--GVEVLVKLLT---STDSEVQKEAARAL 110 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT--------T--HHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC--------C--CHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 456677777777777777777777776665555554444321 1 1234888885 47899999988766
Q ss_pred HHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccchhhccChhHHHHHHHh
Q psy8357 95 NKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQWLYVL 174 (276)
Q Consensus 95 NktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~gvi~h~~tvqwLYsL 174 (276)
..-...- +...+. -.+..+++.+++.+ ..++.+.+..++++++++....++....+.+...++.|-.+
T Consensus 111 ~~l~~~~---~~~~~~--~~~~~~i~~L~~~l-------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 178 (252)
T 4hxt_A 111 ANIASGP---DEAIKA--IVDAGGVEVLVKLL-------TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 178 (252)
T ss_dssp HHHTTSC---HHHHHH--HHHTTHHHHHHHHT-------TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHcCC---HHHHHH--HHHCCCHHHHHHHH-------cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHH
Confidence 6554322 222222 34456788877774 33445677788899999887666665555567899999999
Q ss_pred hcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhhccCCCCchHHHHHHHHHHHHHhcCCCC
Q psy8357 175 VASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPD 254 (276)
Q Consensus 175 ~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL~~~d~~D~E~~v~amTLiNktL~~~pd 254 (276)
..++...|.+.|+..|--++..++++...+++ . .-...+++++. ++|.+++..|...+-.....-|.
T Consensus 179 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-------~---~~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 179 LTSTDSEVQKEAARALANIASGPTSAIKAIVD-------A---GGVEVLQKLLT---STDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH-------T---THHHHHHHGGG---CSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-------C---CCHHHHHHHHC---CCcHHHHHHHHHHHHHHHcCCCc
Confidence 99988899999999998887655433333222 1 23457888886 57889999999988887776665
Q ss_pred Cch
Q psy8357 255 QDS 257 (276)
Q Consensus 255 qds 257 (276)
...
T Consensus 246 ~~~ 248 (252)
T 4hxt_A 246 EHH 248 (252)
T ss_dssp CC-
T ss_pred ccc
Confidence 543
No 10
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.42 E-value=0.0052 Score=50.68 Aligned_cols=194 Identities=16% Similarity=0.146 Sum_probs=125.2
Q ss_pred hhhhHHHHhhcCcchhHHHHHhhHhheeeeeccchhHHHHHHHHHhhccCCCCCchHHHHhhccCCCCchHHHHHHHHHH
Q psy8357 15 PTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLL 94 (276)
Q Consensus 15 ~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~~ds~D~EllvyamTLi 94 (276)
..|.-|..+..++..-|...|+..|--++...+.|...++++ | -...++++|. +++.++.-.|...+
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~--------g--~i~~L~~lL~---~~~~~v~~~a~~~L 120 (252)
T 4db8_A 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA--------G--ALPALVQLLS---SPNEQILQEALWAL 120 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT--------T--HHHHHHHGGG---CSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc--------C--CHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 456667777777666677777777766665555555444331 1 1356788885 36789988887755
Q ss_pred HHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccchhhccChhHHHHHHHh
Q psy8357 95 NKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQWLYVL 174 (276)
Q Consensus 95 NktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~gvi~h~~tvqwLYsL 174 (276)
..-. ..+... .....+..+++.+++.+ ..++.+.+..++.|++++....+.-...+.....+.-|-.+
T Consensus 121 ~~l~----~~~~~~-~~~~~~~~~i~~L~~lL-------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 188 (252)
T 4db8_A 121 SNIA----SGGNEQ-IQAVIDAGALPALVQLL-------SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 188 (252)
T ss_dssp HHHT----TSCHHH-HHHHHHTTHHHHHHHGG-------GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHG
T ss_pred HHhh----cCCchH-HHHHHHCCCHHHHHHHH-------hCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH
Confidence 4432 222222 11235566788877775 33444567778888888876555444444556788899999
Q ss_pred hcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhhccCCCCchHHHHHHHHHHH
Q psy8357 175 VASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLN 246 (276)
Q Consensus 175 ~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL~~~d~~D~E~~v~amTLiN 246 (276)
..++...|.+.|+..|--++..++.+...+++ .| -...++++|. ++|.+++-.|...+-
T Consensus 189 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--------~g--~i~~L~~ll~---~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKE--------AG--ALEKLEQLQS---HENEKIQKEAQEALE 247 (252)
T ss_dssp GGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--------TT--HHHHHHTTTT---CSSSHHHHTHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH--------CC--cHHHHHHHhC---CCCHHHHHHHHHHHH
Confidence 99988889999999998887554434333332 11 2356788885 568899888877553
No 11
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.31 E-value=0.0064 Score=49.35 Aligned_cols=198 Identities=24% Similarity=0.223 Sum_probs=133.5
Q ss_pred hhhHHHHhhcCcchhHHHHHhhHhheeeeeccchhHHHHHHHHHhhccCCCCCchHHHHhhccCCCCchHHHHHHHHHHH
Q psy8357 16 TVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLN 95 (276)
Q Consensus 16 tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~~ds~D~EllvyamTLiN 95 (276)
.|..|..+..|+..-+...|++.|--+....+.|...++++ | -...++++|. ++|.++...|...+.
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--------g--~i~~L~~ll~---~~~~~v~~~a~~~L~ 69 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDA--------G--GVEVLVKLLT---STDSEVQKEAARALA 69 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--------T--HHHHHHHHTT---CSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC--------C--CHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 46778888888888888899998887766666565555442 1 1356788885 467888888777554
Q ss_pred HhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccchhhccChhHHHHHHHhh
Q psy8357 96 KTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQWLYVLV 175 (276)
Q Consensus 96 ktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~gvi~h~~tvqwLYsL~ 175 (276)
.-... .+...+. ..+..+++.+++.+ ..++.+.+..++.+++++--..+.....+.....+..|-.+.
T Consensus 70 ~l~~~---~~~~~~~--~~~~~~i~~l~~ll-------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l 137 (252)
T 4hxt_A 70 NIASG---PDEAIKA--IVDAGGVEVLVKLL-------TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL 137 (252)
T ss_dssp HHTTS---CHHHHHH--HHHTTHHHHHHHHT-------TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHcC---ChHHHHH--HHHCCCHHHHHHHH-------cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 43321 1333333 34566778777774 334456677788888888754443333344457888999999
Q ss_pred cCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhhccCCCCchHHHHHHHHHHHHHhcC
Q psy8357 176 ASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLNKTLNG 251 (276)
Q Consensus 176 ~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL~~~d~~D~E~~v~amTLiNktL~~ 251 (276)
.+....|.+.|+..|--++...+.+...+++ .| -...++++|. ++|.+++..|...+-....+
T Consensus 138 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--------~~--~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~ 200 (252)
T 4hxt_A 138 TSTDSEVQKEAARALANIASGPDEAIKAIVD--------AG--GVEVLVKLLT---STDSEVQKEAARALANIASG 200 (252)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--------TT--HHHHHHHHTT---CSCHHHHHHHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--------Cc--CHHHHHHHHC---CCCHHHHHHHHHHHHHHHcC
Confidence 9888889999999988877665544333222 11 2356888886 67889999999887776654
No 12
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.30 E-value=0.0072 Score=48.61 Aligned_cols=198 Identities=16% Similarity=0.172 Sum_probs=133.3
Q ss_pred CchhhhHHHHhhcCcchhHHHHHhhHhheeeeeccchhHHHHHHHHHhhccCCCCCchHHHHhhccCCCCchHHHHHHHH
Q psy8357 13 HPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMS 92 (276)
Q Consensus 13 h~~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~~ds~D~EllvyamT 92 (276)
..+...-|..|..|+..-|...|+..|--+...++.+...++++ | -...++++|. ++|.++...|..
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~--------g--~i~~L~~lL~---~~~~~v~~~a~~ 76 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDA--------G--ALPALVQLLS---SPNEQILQEALW 76 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--------T--HHHHHHHHTT---CSCHHHHHHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc--------C--CHHHHHHHHc---CCCHHHHHHHHH
Confidence 34556678888899988899999999888876666665554432 1 2447888885 468899888776
Q ss_pred HHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccchhhccChhHHHHHH
Q psy8357 93 LLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQWLY 172 (276)
Q Consensus 93 LiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~gvi~h~~tvqwLY 172 (276)
.+-.-..+ .+...+. -.+..+++.+++.+ ..++.+.+..+..|++++....+.....+-+...+..|-
T Consensus 77 ~L~~l~~~---~~~~~~~--i~~~g~i~~L~~lL-------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 144 (210)
T 4db6_A 77 ALSNIASG---GNEQIQA--VIDAGALPALVQLL-------SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 144 (210)
T ss_dssp HHHHHTTS---CHHHHHH--HHHTTCHHHHHHHT-------TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHhcC---CcHHHHH--HHHCCCHHHHHHHH-------cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHH
Confidence 55443322 2333333 35667888888885 334445666778888888765444433444567889999
Q ss_pred HhhcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhhccCCCCchHHHHHHHHHHHHH
Q psy8357 173 VLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLNKT 248 (276)
Q Consensus 173 sL~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL~~~d~~D~E~~v~amTLiNkt 248 (276)
.+..++...|.+.|+..|--++...+.+...+++ .| -...++++|. ++|.+++-.|...+...
T Consensus 145 ~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~--------~g--~i~~L~~ll~---~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 145 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKE--------AG--ALEKLEQLQS---HENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH--------TT--HHHHHHHGGG---CSCHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH--------CC--CHHHHHHHHh---CCCHHHHHHHHHHHHHH
Confidence 9999888889999999888887765544332221 12 3456788886 57899999888876543
No 13
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.07 E-value=0.065 Score=44.02 Aligned_cols=204 Identities=16% Similarity=0.164 Sum_probs=134.0
Q ss_pred cCchhhhHHHHhhcCcchhHHHHHhhHhheeeeeccchhHHHHHHHHHhhccCCCCCchHHHHhhccCCCCchHHHHHHH
Q psy8357 12 DHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAM 91 (276)
Q Consensus 12 ~h~~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~~ds~D~Ellvyam 91 (276)
..++...|++.+..|+..-+...|++.|--+....+.|...++++ | --..++++|. +++.++...|.
T Consensus 9 ~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~--------g--~i~~L~~lL~---~~~~~v~~~a~ 75 (252)
T 4db8_A 9 HHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDA--------G--ALPALVQLLS---SPNEQILQEAL 75 (252)
T ss_dssp CTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHT--------T--HHHHHHHGGG---CSCHHHHHHHH
T ss_pred cccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHc--------C--cHHHHHHHHc---CCCHHHHHHHH
Confidence 356678899999999988888888888843322244454444331 2 2456888885 45689999888
Q ss_pred HHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccchhhccChhHHHHH
Q psy8357 92 SLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQWL 171 (276)
Q Consensus 92 TLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~gvi~h~~tvqwL 171 (276)
..+..-..+- +...+. ..+..|++.+++.+ ..+..+.+..++.|++++-...+.....+.....+..|
T Consensus 76 ~~L~~l~~~~---~~~~~~--i~~~g~i~~L~~lL-------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 143 (252)
T 4db8_A 76 WALSNIASGG---NEQIQA--VIDAGALPALVQLL-------SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 143 (252)
T ss_dssp HHHHHHTTSC---HHHHHH--HHHTTHHHHHHHGG-------GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHhcCC---HHHHHH--HHHcCCHHHHHHHH-------cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHH
Confidence 7655443322 223322 35566788877775 33444566777888888866555542444556788888
Q ss_pred HHhhcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhhccCCCCchHHHHHHHHHHHHHhcC
Q psy8357 172 YVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLNKTLNG 251 (276)
Q Consensus 172 YsL~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL~~~d~~D~E~~v~amTLiNktL~~ 251 (276)
-.+..+....|.+.|+..|--++...+.+...+++ . .-...++++|. ++|.+++..|...+-....+
T Consensus 144 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-------~---~~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~ 210 (252)
T 4db8_A 144 VQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-------A---GALPALVQLLS---SPNEQILQEALWALSNIASG 210 (252)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-------T---TCHHHHHHGGG---CSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-------C---CCHHHHHHHHC---CCCHHHHHHHHHHHHHHhcC
Confidence 88988888888899988887776554433332221 1 23457899996 56999999999877766644
Q ss_pred CC
Q psy8357 252 IP 253 (276)
Q Consensus 252 ~p 253 (276)
-|
T Consensus 211 ~~ 212 (252)
T 4db8_A 211 GN 212 (252)
T ss_dssp CH
T ss_pred CH
Confidence 33
No 14
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=94.96 E-value=0.077 Score=42.49 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=96.7
Q ss_pred hhhHHHHhhcCcchhHHHHHhhHhheeeeeccchhHHHHHHHHHhhccCCCCCchHHHHhhccCCCCchHHHHHHHHHHH
Q psy8357 16 TVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLN 95 (276)
Q Consensus 16 tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~~ds~D~EllvyamTLiN 95 (276)
.++-|-.+..++..-|...|+..|--++...+.+...++++ | -...++++|. ++|.++...|...+.
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~--------g--~i~~L~~lL~---~~~~~v~~~a~~~L~ 121 (210)
T 4db6_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA--------G--ALPALVQLLS---SPNEQILQEALWALS 121 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT--------T--CHHHHHHHTT---CSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC--------C--CHHHHHHHHc---CCcHHHHHHHHHHHH
Confidence 45555566666555566666666555544444443333321 2 2456888885 568899999887666
Q ss_pred HhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccchhhccChhHHHHHHHhh
Q psy8357 96 KTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQWLYVLV 175 (276)
Q Consensus 96 ktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~gvi~h~~tvqwLYsL~ 175 (276)
.-..+-| ...+. .++..+++.+++.+ ..++.+.+..++.|++++....+.....+.....++.|-.+.
T Consensus 122 ~l~~~~~---~~~~~--~~~~~~i~~L~~ll-------~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll 189 (210)
T 4db6_A 122 NIASGGN---EQIQA--VIDAGALPALVQLL-------SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 189 (210)
T ss_dssp HHTTSCH---HHHHH--HHHTTHHHHHHHHT-------TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHcCCH---HHHHH--HHHcCcHHHHHHHH-------cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH
Confidence 5543222 22111 24566778877774 334556778888889988876444444445557888999999
Q ss_pred cCCchhHHHHHHhhheeeE
Q psy8357 176 ASKFRLVIKTALKLLLIFV 194 (276)
Q Consensus 176 ~S~~rlVvKtaLkLLlVfv 194 (276)
.+....|.+.|+..|--++
T Consensus 190 ~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 190 SHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp GCSCHHHHHHHHHHHHHHC
T ss_pred hCCCHHHHHHHHHHHHHHh
Confidence 8888888888888775443
No 15
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=94.31 E-value=0.088 Score=49.57 Aligned_cols=176 Identities=13% Similarity=0.167 Sum_probs=99.7
Q ss_pred chHHHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhh
Q psy8357 69 WSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVAL 148 (276)
Q Consensus 69 ws~lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl 148 (276)
-..++++|. +++.++...|...+-.-..+- |..... -++..++..+++- +..++.+.+..+..|+
T Consensus 295 i~~Lv~lL~---~~~~~v~~~a~~aL~nl~~~~---~~~~~~--i~~~g~l~~L~~L-------L~~~~~~i~~~a~~aL 359 (529)
T 3tpo_A 295 VPQLVKLLG---ATELPIVTPALRAIGNIVTGT---DEQTQK--VIDAGALAVFPSL-------LTNPKTNIQKEATWTM 359 (529)
T ss_dssp HHHHHHHHT---CSCHHHHHHHHHHHHHHTTSC---HHHHHH--HHHTTGGGGHHHH-------TTCSSHHHHHHHHHHH
T ss_pred hHHHHHHhc---CCChhHHHHHHHHHHHHHccc---hHHHHH--HhhcccHHHHHHH-------HcCCCHHHHHHHHHHH
Confidence 346888884 678888888877654443322 111111 2344555555554 3344455666777777
Q ss_pred cchhhecc-cchhhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhh
Q psy8357 149 GQVMLYVD-GMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLL 227 (276)
Q Consensus 149 ~q~mlYvd-GM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL 227 (276)
+++-.... ....++. ...+..|-.+..+...-|.+.|...|--++.... . +-+.......+. ..|+++|
T Consensus 360 ~nl~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~--~----~~~~~l~~~g~i---~~L~~LL 429 (529)
T 3tpo_A 360 SNITAGRQDQIQQVVN-HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT--V----EQIVYLVHCGII---EPLMNLL 429 (529)
T ss_dssp HHHHTSCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC--H----HHHHHHHHTTCH---HHHHHGG
T ss_pred HHHhcccHHHHHHHHh-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC--H----HHHHHHHHCcCH---HHHHHHh
Confidence 77655322 2333333 3567777777777776777777666543332211 0 111112223333 3588899
Q ss_pred ccCCCCchHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhh-HHH
Q psy8357 228 TDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQG-IAA 272 (276)
Q Consensus 228 ~~~d~~D~E~~v~amTLiNktL~~~pdqds~yd~~d~le~~G-me~ 272 (276)
. +.|.++...++..|...|...+...........+|+.| +++
T Consensus 430 ~---~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ 472 (529)
T 3tpo_A 430 S---AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK 472 (529)
T ss_dssp G---CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred c---CCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHH
Confidence 6 78999999999888888765443333334444566654 443
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=93.23 E-value=0.24 Score=45.70 Aligned_cols=156 Identities=13% Similarity=0.122 Sum_probs=93.9
Q ss_pred chHHHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHH-HHHhhHHHHHHhhhhcCCccccC-CCCCCchhhh
Q psy8357 69 WSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDA-LEEQGIAAVIRSLDQHGIKYTTS-STDLPTEPLV 146 (276)
Q Consensus 69 ws~lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~-Le~~Gme~i~~~~~~~~~~~~~~-~tn~q~YiLr 146 (276)
...++++|. +++.++...|...+.....+-+ +.+.. ++..++..+++.+ ..+ +...+..+..
T Consensus 288 v~~Lv~lL~---~~~~~v~~~a~~~L~nl~~~~~------~~~~~~~~~~~l~~L~~lL-------~~~~~~~v~~~A~~ 351 (528)
T 4b8j_A 288 CPRLVELLL---HPSPSVLIPALRTVGNIVTGDD------AQTQCIIDHQALPCLLSLL-------TQNLKKSIKKEACW 351 (528)
T ss_dssp HHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCH------HHHHHHHTTTHHHHHHHHH-------HSCCCHHHHHHHHH
T ss_pred HHHHHHHHc---CCChhHHHHHHHHHHHHHcCCH------HHHHHHHHhhhHHHHHHHH-------cCCCcHHHHHHHHH
Confidence 457888885 4577888888776655544332 12222 3445566666654 223 4455667777
Q ss_pred hhcchhheccc-chhhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeec-cCchHHHHHHHHHhhhcCCCCCchHHH
Q psy8357 147 ALGQVMLYVDG-MTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYV-ESNCFLLIQAVHAVDNSNGEPPWSNIM 224 (276)
Q Consensus 147 Al~q~mlYvdG-M~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~-e~n~~l~~~Av~~v~~~~~~~pwsnlm 224 (276)
+++++...... ...++ ....+..|..+..+....|.+.|+..|--++... ..+... +... .--..++
T Consensus 352 ~L~nl~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~-------l~~~---~~i~~L~ 420 (528)
T 4b8j_A 352 TISNITAGNKDQIQAVI-NAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKY-------LVSE---GCIKPLC 420 (528)
T ss_dssp HHHHHHTSCHHHHHHHH-HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHH-------HHHT---TCHHHHH
T ss_pred HHHHHHCCCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHH-------HHHC---CCHHHHH
Confidence 88877653221 22222 2355677777777777777787777776554431 111111 1112 2345688
Q ss_pred HhhccCCCCchHHHHHHHHHHHHHhcCCCC
Q psy8357 225 RLLTDRDSTDTELLIYAMSLLNKTLNGIPD 254 (276)
Q Consensus 225 ~lL~~~d~~D~E~~v~amTLiNktL~~~pd 254 (276)
++|. +.|.++...++..+...+...+.
T Consensus 421 ~lL~---~~d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 421 DLLI---CPDIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp HGGG---CSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHc---CCCHHHHHHHHHHHHHHHHHHHH
Confidence 8896 57899999999999888876554
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=93.06 E-value=0.33 Score=42.82 Aligned_cols=155 Identities=13% Similarity=0.110 Sum_probs=96.2
Q ss_pred chHHHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHH-HHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhh
Q psy8357 69 WSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVD-ALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVA 147 (276)
Q Consensus 69 ws~lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d-~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrA 147 (276)
...++++|. +.|.++...|...+.....+-++ ... .++..+++.+++.+ ..++.+.+..+++|
T Consensus 236 i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~~~l~~L~~ll-------~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 236 CRRLVELLM---HNDYKVVSPALRAVGNIVTGDDI------QTQVILNCSALQSLLHLL-------SSPKESIKKEACWT 299 (450)
T ss_dssp HHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCHH------HHHHHHTTTHHHHHHHHT-------TCSSHHHHHHHHHH
T ss_pred HHHHHHHHC---CCchhHHHHHHHHHHHHhhCChH------HHHHHHHCccHHHHHHHH-------cCCCHHHHHHHHHH
Confidence 457888885 46789998888766655443321 122 23445666666664 33344556677888
Q ss_pred hcchhh-ecccchhhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEee-ccCchHHHHHHHHHhhhcCCCCCchHHHH
Q psy8357 148 LGQVML-YVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEY-VESNCFLLIQAVHAVDNSNGEPPWSNIMR 225 (276)
Q Consensus 148 l~q~ml-YvdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey-~e~n~~l~~~Av~~v~~~~~~~pwsnlm~ 225 (276)
++++.. ..+....+++ ...+..|..+..++...|.+.|...|--++.. +..+. +.+-.+. --..+++
T Consensus 300 L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~-------~~l~~~~---~i~~L~~ 368 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVID-ANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQI-------KYLVELG---CIKPLCD 368 (450)
T ss_dssp HHHHTTSCHHHHHHHHH-TTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHH-------HHHHHHT---CHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHH-------HHHHHCC---CHHHHHH
Confidence 888764 3344444443 36777888887777777888887777665443 11111 1111122 2346888
Q ss_pred hhccCCCCchHHHHHHHHHHHHHhcCCC
Q psy8357 226 LLTDRDSTDTELLIYAMSLLNKTLNGIP 253 (276)
Q Consensus 226 lL~~~d~~D~E~~v~amTLiNktL~~~p 253 (276)
+|. ..|.+++..|+..+...+...|
T Consensus 369 ll~---~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 369 LLT---VMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp GGG---SSCHHHHHHHHHHHHHHHHHHH
T ss_pred Hhc---CCCHHHHHHHHHHHHHHHHhch
Confidence 886 4589999999988887776554
No 18
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=93.00 E-value=0.15 Score=47.91 Aligned_cols=168 Identities=14% Similarity=0.208 Sum_probs=92.0
Q ss_pred hHHHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHH-HHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhh
Q psy8357 70 SNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDA-LEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVAL 148 (276)
Q Consensus 70 s~lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~-Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl 148 (276)
..++++|. +++.++...|...+-.-..+- |. .+.. ++..++..+++- +..++.+.+..+..|+
T Consensus 277 ~~Lv~lL~---~~~~~v~~~al~aL~nl~~~~---~~---~~~~i~~~g~l~~L~~L-------L~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 277 PQLVKLLG---ATELPIVTPALRAIGNIVTGT---DE---QTQKVIDAGALAVFPSL-------LTNPKTNIQKEATWTM 340 (510)
T ss_dssp HHHHHHHT---CSCHHHHHHHHHHHHHHTTSC---HH---HHHHHHHTTGGGGCC-C-------TTCSSHHHHHHHHHHH
T ss_pred hhhhhhhc---CCChhhhhHHHHHHHHhhcCC---HH---HHHHHhhccchHHHHHH-------hcCCCHHHHHHHHHHH
Confidence 45888884 578888888776554433321 11 1222 333334333332 3444455666677777
Q ss_pred cchhhecc-cchhhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhh
Q psy8357 149 GQVMLYVD-GMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLL 227 (276)
Q Consensus 149 ~q~mlYvd-GM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL 227 (276)
+++..... ....++. ...+..|..+..+.-.-|-|.|...|--++.... . +-+........ -..++++|
T Consensus 341 ~nl~a~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~-~-----~~~~~L~~~g~---i~~L~~LL 410 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVN-HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT-V-----EQIVYLVHCGI---IEPLMNLL 410 (510)
T ss_dssp HHHTTSCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCC-H-----HHHHHHHHTTC---HHHHHHGG
T ss_pred HHHHcCcHHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCC-H-----HHHHHHHHCCC---HHHHHHHh
Confidence 77754322 2333333 3566777777777666676766655533322111 0 11111222233 34588899
Q ss_pred ccCCCCchHHHHHHHHHHHHHhcC---CCCCchhhHHHHHHHHhh
Q psy8357 228 TDRDSTDTELLIYAMSLLNKTLNG---IPDQDSYYDQVDALEEQG 269 (276)
Q Consensus 228 ~~~d~~D~E~~v~amTLiNktL~~---~pdqds~yd~~d~le~~G 269 (276)
+ +.|.++...++..|...|.. .+..+.|. ..+|+.|
T Consensus 411 ~---~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~---~~iee~g 449 (510)
T 3ul1_B 411 S---AKDTKIIQVILDAISNIFQAAEKLGETEKLS---IMIEECG 449 (510)
T ss_dssp G---CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHH---HHHHHTT
T ss_pred c---CCCHHHHHHHHHHHHHHHHHhHhccchHHHH---HHHHHcC
Confidence 6 78999999999988887764 34444443 3455554
No 19
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=92.50 E-value=0.45 Score=44.10 Aligned_cols=155 Identities=17% Similarity=0.122 Sum_probs=97.2
Q ss_pred chHHHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhh
Q psy8357 69 WSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVAL 148 (276)
Q Consensus 69 ws~lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl 148 (276)
...++++|. ++|.++...|...+..-..+-|+ . .-..++..++..+++.+ ..+..+.+..+++++
T Consensus 259 l~~L~~lL~---~~d~~v~~~a~~~L~~L~~~~~~--~---~~~~~~~~~v~~Lv~lL-------~~~~~~v~~~a~~~L 323 (530)
T 1wa5_B 259 LPTLAKLIY---SMDTETLVDACWAISYLSDGPQE--A---IQAVIDVRIPKRLVELL-------SHESTLVQTPALRAV 323 (530)
T ss_dssp HHHHHHHTT---CCCHHHHHHHHHHHHHHHSSCHH--H---HHHHHHTTCHHHHHHGG-------GCSCHHHHHHHHHHH
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHhCCCHH--H---HHHHHhcCcHHHHHHHH-------CCCChhhHHHHHHHH
Confidence 346777884 46789998887766555443221 1 11134456777777775 223345566788888
Q ss_pred cchhhecccchhhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhhc
Q psy8357 149 GQVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLT 228 (276)
Q Consensus 149 ~q~mlYvdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL~ 228 (276)
+++.-..+.....+-+...+..|-.+..++...|.+.|+..|--++..+.....- +-.+ .-...++++|.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~-------~~~~---~~l~~L~~lL~ 393 (530)
T 1wa5_B 324 GNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQA-------VIDA---NLIPPLVKLLE 393 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH-------HHHT---TCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH-------HHHC---CCHHHHHHHHh
Confidence 8876543332222333467888888888888888899988887776544322221 1112 23567888886
Q ss_pred cCCCCchHHHHHHHHHHHHHhcC
Q psy8357 229 DRDSTDTELLIYAMSLLNKTLNG 251 (276)
Q Consensus 229 ~~d~~D~E~~v~amTLiNktL~~ 251 (276)
.+|.+++-.|...|.....+
T Consensus 394 ---~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 394 ---VAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHHHHHhc
Confidence 46889988887777666554
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=92.00 E-value=0.32 Score=44.90 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=98.8
Q ss_pred chHHHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhh
Q psy8357 69 WSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVAL 148 (276)
Q Consensus 69 ws~lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl 148 (276)
-..++++|. ++.+.++.-.|...+..-..+-|..... ....++..+++.+ .....+.+..++.|+
T Consensus 204 l~~Ll~lL~--~~~~~~v~~~a~~~L~~L~~~~~~~~~~------~~~~~l~~L~~lL-------~~~~~~v~~~a~~aL 268 (528)
T 4b8j_A 204 LLPLLAQLN--EHTKLSMLRNATWTLSNFCRGKPQPSFE------QTRPALPALARLI-------HSNDEEVLTDACWAL 268 (528)
T ss_dssp HHHHHHTCC--TTCCHHHHHHHHHHHHHHHCSSSCCCHH------HHTTHHHHHHHHT-------TCCCHHHHHHHHHHH
T ss_pred HHHHHHHHh--cCCCHHHHHHHHHHHHHHHcCCCCCcHH------HHHHHHHHHHHHH-------CCCCHHHHHHHHHHH
Confidence 346777884 3578888888887777666655554332 2366777777764 333445566777788
Q ss_pred cchhhecccchhhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhhc
Q psy8357 149 GQVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLT 228 (276)
Q Consensus 149 ~q~mlYvdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL~ 228 (276)
+.+....+..-..+-....+..|-.+..++...|...|+..|--++...+.....++ . . .-...++++|.
T Consensus 269 ~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~-------~-~--~~l~~L~~lL~ 338 (528)
T 4b8j_A 269 SYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCII-------D-H--QALPCLLSLLT 338 (528)
T ss_dssp HHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-------T-T--THHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHH-------H-h--hhHHHHHHHHc
Confidence 877655544433444557788888998888888888888888666543332221111 1 1 22446788886
Q ss_pred cCCCCchHHHHHHHHHHHHHhcC
Q psy8357 229 DRDSTDTELLIYAMSLLNKTLNG 251 (276)
Q Consensus 229 ~~d~~D~E~~v~amTLiNktL~~ 251 (276)
++.+.+++..|.-.|.....+
T Consensus 339 --~~~~~~v~~~A~~~L~nl~~~ 359 (528)
T 4b8j_A 339 --QNLKKSIKKEACWTISNITAG 359 (528)
T ss_dssp --SCCCHHHHHHHHHHHHHHHTS
T ss_pred --CCCcHHHHHHHHHHHHHHHCC
Confidence 222788888887766665554
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=90.50 E-value=1.2 Score=41.23 Aligned_cols=160 Identities=11% Similarity=0.051 Sum_probs=92.2
Q ss_pred chHHHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhh
Q psy8357 69 WSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVAL 148 (276)
Q Consensus 69 ws~lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl 148 (276)
-..++++|. +++.++...|...+-.-..+-+ ..... .++..++..+++.+ ..+....+..++.|+
T Consensus 301 v~~Lv~lL~---~~~~~v~~~a~~~L~~l~~~~~---~~~~~--~~~~~~l~~L~~lL-------~~~~~~vr~~A~~aL 365 (530)
T 1wa5_B 301 PKRLVELLS---HESTLVQTPALRAVGNIVTGND---LQTQV--VINAGVLPALRLLL-------SSPKENIKKEACWTI 365 (530)
T ss_dssp HHHHHHGGG---CSCHHHHHHHHHHHHHHTTSCH---HHHHH--HHHTTHHHHHHHHT-------TCSCHHHHHHHHHHH
T ss_pred HHHHHHHHC---CCChhhHHHHHHHHHHHHcCCH---HHHHH--HHHcchHHHHHHHH-------cCCCHHHHHHHHHHH
Confidence 456888885 4678888888776654443322 11111 24456666666664 223334555667777
Q ss_pred cchhhe-cccchhhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhh
Q psy8357 149 GQVMLY-VDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLL 227 (276)
Q Consensus 149 ~q~mlY-vdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL 227 (276)
+++... .+....++ ....+..|..+..++...|.+.|+..|--++...... +-.. +.+.... --..++++|
T Consensus 366 ~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~---~~l~~~~---~l~~L~~ll 437 (530)
T 1wa5_B 366 SNITAGNTEQIQAVI-DANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR-PDII---RYLVSQG---CIKPLCDLL 437 (530)
T ss_dssp HHHTTSCHHHHHHHH-HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTC-THHH---HHHHHTT---CHHHHHHHT
T ss_pred HHHHcCCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCc-HHHH---HHHHHCC---CHHHHHHHH
Confidence 776642 22233333 2345666766666666677777777776665442210 0111 1111122 345678888
Q ss_pred ccCCCCchHHHHHHHHHHHHHhcCCCC
Q psy8357 228 TDRDSTDTELLIYAMSLLNKTLNGIPD 254 (276)
Q Consensus 228 ~~~d~~D~E~~v~amTLiNktL~~~pd 254 (276)
. +.|.+++..++..+...+...|.
T Consensus 438 ~---~~~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 438 E---IADNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp T---TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred h---CCCHHHHHHHHHHHHHHHHhhhh
Confidence 6 46899999999999888876654
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=90.45 E-value=2.7 Score=36.94 Aligned_cols=204 Identities=13% Similarity=0.065 Sum_probs=117.0
Q ss_pred cCchhhhHHHHhhcCc-chhHHHHHhhHhheeeeeccchhHHHHHHHHHhhccCCCCCchHHHHhhccCCCCchHHHHHH
Q psy8357 12 DHPPTVQWLYVLVASK-FRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYA 90 (276)
Q Consensus 12 ~h~~tiqwLy~L~~S~-~rlVvKtaLkLLlVfvey~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~~ds~D~Ellvya 90 (276)
+.+..+..|..+..++ ..-|-..|+..|--+......+...+++ .| -...++++|. ++|.++...|
T Consensus 61 ~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--------~~--~i~~L~~lL~---~~~~~vr~~a 127 (450)
T 2jdq_A 61 STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQ--------AG--AVPIFIELLS---SEFEDVQEQA 127 (450)
T ss_dssp TSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHH--------TT--HHHHHHHHTT---CSCHHHHHHH
T ss_pred HcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh--------CC--CHHHHHHHHc---CCCHHHHHHH
Confidence 3335666777666666 5566666666665554433333322211 12 2346777885 4688999988
Q ss_pred HHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecc-cchhhccChhHHH
Q psy8357 91 MSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVD-GMTGIMDHPPTVQ 169 (276)
Q Consensus 91 mTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvd-GM~gvi~h~~tvq 169 (276)
...+..-...-| .+.+. .++..+++.+++.+.+ ....+.+..++.+++++.-..+ .....+ -...+.
T Consensus 128 ~~~L~~l~~~~~---~~~~~--~~~~~~i~~L~~~l~~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~ 195 (450)
T 2jdq_A 128 VWALGNIAGDST---MCRDY--VLDCNILPPLLQLFSK------QNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLN 195 (450)
T ss_dssp HHHHHHHHTTCH---HHHHH--HHHTTCHHHHHHHTTS------CCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHH
T ss_pred HHHHHHHccCCH---HHHHH--HHHCCCHHHHHHHhcC------CCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHH
Confidence 876655443222 22222 3455677777777521 1223445556666766654431 111111 256788
Q ss_pred HHHHhhcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhhccCCCCchHHHHHHHHHHHHHh
Q psy8357 170 WLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLNKTL 249 (276)
Q Consensus 170 wLYsL~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL~~~d~~D~E~~v~amTLiNktL 249 (276)
.|-.+..+....|...|...|--+++....+...+ ... .-...++++|. +.|.+++..|...+....
T Consensus 196 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-------~~~---~~i~~L~~ll~---~~~~~v~~~a~~~L~~l~ 262 (450)
T 2jdq_A 196 VLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAV-------IDA---GVCRRLVELLM---HNDYKVVSPALRAVGNIV 262 (450)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHH-------HHT---TTHHHHHHHTT---CSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHH-------HHc---CcHHHHHHHHC---CCchhHHHHHHHHHHHHh
Confidence 88888888777788888887776665443222111 111 23457888886 568899999888777666
Q ss_pred cCCC
Q psy8357 250 NGIP 253 (276)
Q Consensus 250 ~~~p 253 (276)
.+.|
T Consensus 263 ~~~~ 266 (450)
T 2jdq_A 263 TGDD 266 (450)
T ss_dssp TSCH
T ss_pred hCCh
Confidence 5543
No 23
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=90.36 E-value=3 Score=33.41 Aligned_cols=178 Identities=16% Similarity=0.137 Sum_probs=90.5
Q ss_pred cccCchhhhHHHHhhcCcchhHHHHHhhHhheeee----------eccchhHHHHHHHHHhhccCCCCCchHHHHhhccC
Q psy8357 10 IMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVE----------YVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDR 79 (276)
Q Consensus 10 vi~h~~tiqwLy~L~~S~~rlVvKtaLkLLlVfve----------y~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~~ 79 (276)
...+++.+..|-.+..++...|-..|++.|--+-+ ..+++...-..|+.+...-....-...+++.|.
T Consensus 14 ~~~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-- 91 (211)
T 3ltm_A 14 LRADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALK-- 91 (211)
T ss_dssp --CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT--
T ss_pred hhcCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc--
Confidence 45788899999999988888887777776654422 112233333444444444333334445555553
Q ss_pred CCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccch
Q psy8357 80 DSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMT 159 (276)
Q Consensus 80 ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~ 159 (276)
++|.++...|...+.+. .+. ..++.+++.+ ..++...+..+.+|++++
T Consensus 92 -~~~~~vr~~a~~aL~~~----~~~------------~~~~~L~~~l-------~d~~~~vr~~a~~aL~~~-------- 139 (211)
T 3ltm_A 92 -DEDGWVRQSAAVALGQI----GDE------------RAVEPLIKAL-------KDEDWFVRIAAAFALGEI-------- 139 (211)
T ss_dssp -CSSHHHHHHHHHHHHHH----CCG------------GGHHHHHHHT-------TCSSHHHHHHHHHHHHHH--------
T ss_pred -CCCHHHHHHHHHHHHHh----CcH------------HHHHHHHHHH-------hCCCHHHHHHHHHHHHHc--------
Confidence 35566666655544332 221 1223333332 122223334445555443
Q ss_pred hhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhhccCCCCchHHHH
Q psy8357 160 GIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLI 239 (276)
Q Consensus 160 gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL~~~d~~D~E~~v 239 (276)
.+++.+..|-.+..++...|-..|.+.|--+ ....--..+.++|+ ..|.++.-
T Consensus 140 ---~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~---------------------~~~~~~~~L~~~l~---d~~~~vr~ 192 (211)
T 3ltm_A 140 ---GDERAVEPLIKALKDEDGWVRQSAADALGEI---------------------GGERVRAAMEKLAE---TGTGFARK 192 (211)
T ss_dssp ---CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH---------------------CSHHHHHHHHHHHH---HCCHHHHH
T ss_pred ---CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------------------CchhHHHHHHHHHh---CCCHHHHH
Confidence 3456666666666665555555554444332 11112234566665 34667777
Q ss_pred HHHHHHHHH
Q psy8357 240 YAMSLLNKT 248 (276)
Q Consensus 240 ~amTLiNkt 248 (276)
.|...+.+.
T Consensus 193 ~A~~aL~~~ 201 (211)
T 3ltm_A 193 VAVNYLETH 201 (211)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhc
Confidence 776655444
No 24
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=87.26 E-value=3.6 Score=39.44 Aligned_cols=143 Identities=15% Similarity=0.151 Sum_probs=87.8
Q ss_pred CchhhhHHHHhhcCcchhHHHHHhhHhheeeeeccchhHHHHHHHHHhhccCCCCCchHHHHhhccCCCCchHHHHHHHH
Q psy8357 13 HPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMS 92 (276)
Q Consensus 13 h~~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~~ds~D~EllvyamT 92 (276)
....|.-|-.+..++..-|...|++.|.-+.+..+ |...++. ..| --..+++.|. ++.|.++...|..
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~-------~~~--~i~~Lv~~L~--~~~~~~~~~~A~~ 79 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMR-------SPQ--MVSAIVRTMQ--NTNDVETARCTAG 79 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTT-------CHH--HHHHHHHHHH--SCCCHHHHHHHHH
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHh-------ccC--hHHHHHHHHh--cCCCHHHHHHHHH
Confidence 34567888888888888888889998888865543 3221111 111 1245788885 3458899988887
Q ss_pred HHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccchhhccChhHHHHHH
Q psy8357 93 LLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQWLY 172 (276)
Q Consensus 93 LiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~gvi~h~~tvqwLY 172 (276)
.+- .|+.-+ ..... -.+..+++.+++.+ ..+....+.+++.+++++....+.-...+.....|..|-
T Consensus 80 ~L~-~Ls~~~---~~~~~--i~~~g~i~~Lv~lL-------~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv 146 (644)
T 2z6h_A 80 TLH-NLSHHR---EGLLA--IFKSGGIPALVKML-------GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV 146 (644)
T ss_dssp HHH-HHTTSH---HHHHH--HHTTTHHHHHHHHT-------TCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHH
T ss_pred HHH-HHhcCh---hhHHH--HHHcCCHHHHHHHH-------hCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHH
Confidence 665 344322 22221 23446777777764 334456677888888888766554444454556677777
Q ss_pred HhhcCCch
Q psy8357 173 VLVASKFR 180 (276)
Q Consensus 173 sL~~S~~r 180 (276)
.+..++..
T Consensus 147 ~lL~~~~~ 154 (644)
T 2z6h_A 147 ALLNKTNV 154 (644)
T ss_dssp HGGGCCCH
T ss_pred HHHCcCCH
Confidence 77666543
No 25
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=85.93 E-value=3 Score=39.16 Aligned_cols=202 Identities=17% Similarity=0.118 Sum_probs=107.6
Q ss_pred hhhHHHHhhcCcchhHHHHHhhHhheeeeeccchhHHHHHHHHHhhccCCCCCchHHHHhhccCCCC--chHHHH-HHHH
Q psy8357 16 TVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDST--DTELLI-YAMS 92 (276)
Q Consensus 16 tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~~ds~--D~Ellv-yamT 92 (276)
.|.-|..|..|+..-|...|+..|--....++.+...+++ .| -...++++|...+.. ..+++- .+.+
T Consensus 163 aip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~--------~g--~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 232 (529)
T 3tpo_A 163 AIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIK--------HG--AIDPLLALLAVPDLSTLACGYLRNLTWT 232 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH--------TT--CHHHHHHTTCSSCGGGSCHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHH--------cC--CcHHHHHHHhccchhHhHHHHHHHHHHH
Confidence 3445555555555555555555544333222222222221 12 245678888643322 223333 3334
Q ss_pred HHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccchhhccChhHHHHHH
Q psy8357 93 LLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQWLY 172 (276)
Q Consensus 93 LiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~gvi~h~~tvqwLY 172 (276)
|-|-.-+.-|-. .+- ....++..+++.+ ..+..+.+..+..|++.+.-..+.....+.....+..|-
T Consensus 233 L~nl~~~~~~~~-~~~-----~~~~~lp~L~~LL-------~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv 299 (529)
T 3tpo_A 233 LSNLCRNKNPAP-PLD-----AVEQILPTLVRLL-------HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 299 (529)
T ss_dssp HHHHHCCCTTCC-CHH-----HHHHHHHHHHHHT-------TSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHH
T ss_pred HHHHHhcccchh-hHH-----HHhhHHHHHHHHh-------cCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHH
Confidence 444333332322 221 1234455555543 233334455566777776665555555566677888899
Q ss_pred HhhcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhhccCCCCchHHHHHHHHHHHHHhcCC
Q psy8357 173 VLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGI 252 (276)
Q Consensus 173 sL~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL~~~d~~D~E~~v~amTLiNktL~~~ 252 (276)
.|..++...|...|+..|--++..++.+...++. ..+ ...++++|. +++.+++-.|.-.+-...++-
T Consensus 300 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~-------~g~---l~~L~~LL~---~~~~~i~~~a~~aL~nl~~~~ 366 (529)
T 3tpo_A 300 KLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-------AGA---LAVFPSLLT---NPKTNIQKEATWTMSNITAGR 366 (529)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-------TTG---GGGHHHHTT---CSSHHHHHHHHHHHHHHHTSC
T ss_pred HHhcCCChhHHHHHHHHHHHHHccchHHHHHHhh-------ccc---HHHHHHHHc---CCCHHHHHHHHHHHHHHhccc
Confidence 9999988888888888876555444433333322 222 345788886 678888887766554444443
Q ss_pred C
Q psy8357 253 P 253 (276)
Q Consensus 253 p 253 (276)
|
T Consensus 367 ~ 367 (529)
T 3tpo_A 367 Q 367 (529)
T ss_dssp H
T ss_pred H
Confidence 3
No 26
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=85.81 E-value=6.4 Score=31.19 Aligned_cols=85 Identities=14% Similarity=0.089 Sum_probs=50.0
Q ss_pred ccccCchhhhHHHHhhcCcchhHHHHHhhHhheeee----------eccchhHHHHHHHHHhhccCCCCCchHHHHhhcc
Q psy8357 9 GIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVE----------YVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTD 78 (276)
Q Consensus 9 gvi~h~~tiqwLy~L~~S~~rlVvKtaLkLLlVfve----------y~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~ 78 (276)
+-..++....-+..+..++...|-..|+..|--+-+ ..++|...-..|+.+...-........+++.|.
T Consensus 8 ~~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~- 86 (201)
T 3ltj_A 8 HHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALK- 86 (201)
T ss_dssp CCCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-
T ss_pred ccccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc-
Confidence 344455566666666666666666655555443321 123455555566666665444445667777774
Q ss_pred CCCCchHHHHHHHHHHHH
Q psy8357 79 RDSTDTELLIYAMSLLNK 96 (276)
Q Consensus 79 ~ds~D~EllvyamTLiNk 96 (276)
..|.++...|...+-+
T Consensus 87 --d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 87 --DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp --CSSHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHH
Confidence 3678888887775554
No 27
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=85.19 E-value=2.3 Score=39.16 Aligned_cols=140 Identities=16% Similarity=0.222 Sum_probs=97.2
Q ss_pred HHHHhhccCCCCchHHHHHHHHHHHHhhCCCC-CCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhc
Q psy8357 71 NIMRLLTDRDSTDTELLIYAMSLLNKTLNGIP-DQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALG 149 (276)
Q Consensus 71 ~lm~lL~~~ds~D~EllvyamTLiNktL~~lp-DqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~ 149 (276)
-+++++. +.|.=+-++|+-.+|.-|.+.| +..+|-.+.+.|.. ++ ++..+-.+.|+.-.++
T Consensus 79 ~iI~llk---~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~d-----li----------k~~~~il~~eaae~Lg 140 (265)
T 3b2a_A 79 VFINALS---QENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVS-----LL----------ESPDDMMRIETIDVLS 140 (265)
T ss_dssp HHHHTCC---STTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHH-----HT----------TSCCHHHHHHHHHHHH
T ss_pred HHHHHHh---ccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-----Hh----------cCCCchHHHHHHHHhC
Confidence 4666674 5789999999999999999999 56777766555432 22 2233334455555555
Q ss_pred chhhecccchhhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhhcc
Q psy8357 150 QVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTD 229 (276)
Q Consensus 150 q~mlYvdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL~~ 229 (276)
.+ .-..-.+..+.||++|+.|+.|-|=-.||.+|+=.-.|++ |.+--..-++.+-++|.
T Consensus 141 kl-------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~-------------D~~i~~~I~~eI~elL~- 199 (265)
T 3b2a_A 141 KL-------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA-------------DSGHLTLILDEIPSLLQ- 199 (265)
T ss_dssp HC-------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS-------------SCCCGGGTTTTHHHHHT-
T ss_pred cC-------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC-------------CHHHHHHHHHHHHHHHc-
Confidence 44 4445588999999999999988886666666554433332 12223456778888996
Q ss_pred CCCCchHHHHHHHHHHHHHhcC
Q psy8357 230 RDSTDTELLIYAMSLLNKTLNG 251 (276)
Q Consensus 230 ~d~~D~E~~v~amTLiNktL~~ 251 (276)
+-|.++.=.|+..+-..++-
T Consensus 200 --~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 200 --NDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp --CSCHHHHHHHHHHHHHHTTS
T ss_pred --CCCHHHHHHHHHHHHHHHcC
Confidence 56899999999988888765
No 28
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=84.30 E-value=11 Score=29.83 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=33.9
Q ss_pred ccchhHHHHHHHHHhhccCCCCCchHHHHhhccCCCCchHHHHHHHHHHHH
Q psy8357 46 VESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLNK 96 (276)
Q Consensus 46 ~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~~ds~D~EllvyamTLiNk 96 (276)
.+.|...-..|+.+...-........+++.|. .+|.++...|...+-+
T Consensus 24 ~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~---~~~~~vr~~a~~~L~~ 71 (201)
T 3ltj_A 24 QDDSYYVRRAAAYALGKIGDERAVEPLIKALK---DEDAWVRRAAADALGQ 71 (201)
T ss_dssp TCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCChhHHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 44567777788888877665566778888884 4678888887765544
No 29
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=84.27 E-value=7.1 Score=31.15 Aligned_cols=150 Identities=15% Similarity=0.128 Sum_probs=92.1
Q ss_pred ccCchhhhHHHHhhcCcchhHHHHHhhHhheeee----------eccchhHHHHHHHHHhhccCCCCCchHHHHhhccCC
Q psy8357 11 MDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVE----------YVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRD 80 (276)
Q Consensus 11 i~h~~tiqwLy~L~~S~~rlVvKtaLkLLlVfve----------y~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~~d 80 (276)
+.+++.+..|..+..++...|-..|++.|--+-+ ..++|..+-..|+.+...-....-...+++.|.
T Consensus 46 ~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~--- 122 (211)
T 3ltm_A 46 IGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALK--- 122 (211)
T ss_dssp HCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT---
T ss_pred hCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHh---
Confidence 3456788888888888877777777666654421 123445555666777665544445677888884
Q ss_pred CCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccchh
Q psy8357 81 STDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTG 160 (276)
Q Consensus 81 s~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~g 160 (276)
.+|.++...|...+-+. .+. ..+..+++.+ ..++...+..+.+|++++
T Consensus 123 d~~~~vr~~a~~aL~~~----~~~------------~~~~~L~~~l-------~d~~~~vr~~a~~aL~~~--------- 170 (211)
T 3ltm_A 123 DEDWFVRIAAAFALGEI----GDE------------RAVEPLIKAL-------KDEDGWVRQSAADALGEI--------- 170 (211)
T ss_dssp CSSHHHHHHHHHHHHHH----CCG------------GGHHHHHHHT-------TCSSHHHHHHHHHHHHHH---------
T ss_pred CCCHHHHHHHHHHHHHc----CCH------------HHHHHHHHHH-------cCCCHHHHHHHHHHHHHh---------
Confidence 47788888877655443 332 2333444443 222223444556666665
Q ss_pred hccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeec
Q psy8357 161 IMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYV 197 (276)
Q Consensus 161 vi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~ 197 (276)
.+++.+..|-.+..++...|-+.|.+.|--+....
T Consensus 171 --~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 171 --GGERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp --CSHHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred --CchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 46889999998888877888888888776664443
No 30
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=81.56 E-value=16 Score=32.91 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=88.3
Q ss_pred chhhhHHHHhhcCcchhHHHHHhhHhheeeeeccchhHHHHHHHHHhhccCCCCCchHHHHhhccCCCCchHHHHHHHHH
Q psy8357 14 PPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSL 93 (276)
Q Consensus 14 ~~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~~ds~D~EllvyamTL 93 (276)
...+.-|-.+..++..-|...|++.|.-+.+..+ |...++. ..| -...++++|.. +.|.++...|...
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~-------~~~--~i~~Lv~~L~~--~~~~~~~~~a~~~ 83 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMR-------SPQ--MVSAIVRTMQN--TNDVETARCTAGT 83 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHT-------CHH--HHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc-cHHHHHh-------Ccc--hHHHHHHHHhc--CCCHHHHHHHHHH
Confidence 3457778888888888888888888877764432 3222221 111 12468888853 4588888888776
Q ss_pred HHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccchhhccChhHHHHHHH
Q psy8357 94 LNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQWLYV 173 (276)
Q Consensus 94 iNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~gvi~h~~tvqwLYs 173 (276)
+-+ |+.- +...+. -.+..|++.+++.+ ..+..+.+.+++++++++....+.-...+.....+.-|-.
T Consensus 84 L~~-ls~~---~~~~~~--i~~~g~i~~L~~lL-------~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 150 (529)
T 1jdh_A 84 LHN-LSHH---REGLLA--IFKSGGIPALVKML-------GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 150 (529)
T ss_dssp HHH-HTTS---HHHHHH--HHHTTHHHHHHHHT-------TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHH
T ss_pred HHH-HHcC---chhHHH--HHHcCCHHHHHHHH-------cCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHH
Confidence 655 3322 222222 23457788887775 3344456778888888887765554445555666777777
Q ss_pred hhcCCchhH
Q psy8357 174 LVASKFRLV 182 (276)
Q Consensus 174 L~~S~~rlV 182 (276)
+..++...+
T Consensus 151 ll~~~~~~~ 159 (529)
T 1jdh_A 151 LLNKTNVKF 159 (529)
T ss_dssp GGGCCCHHH
T ss_pred HHhcCCHHH
Confidence 776654333
No 31
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=81.09 E-value=3.6 Score=36.89 Aligned_cols=181 Identities=15% Similarity=0.155 Sum_probs=109.8
Q ss_pred HHhhHhheeeeeccchhHHHHHHHHHhhccCCCCCchHHHH-hhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHH
Q psy8357 34 TALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMR-LLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVD 112 (276)
Q Consensus 34 taLkLLlVfvey~e~n~~lli~Av~~v~~~~g~~pws~lm~-lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d 112 (276)
.||+.|.-++|--+ |+.-+++ ..| +..+++ +|. +++.++...|...|-....+ .+...+.
T Consensus 59 ~Al~~L~~lv~~~d-na~~~~~-------~G~---l~~Lv~~lL~---s~~~~vr~~Aa~~Lg~ia~~---n~~~~~~-- 119 (296)
T 1xqr_A 59 GALELLADLCENMD-NAADFCQ-------LSG---MHLLVGRYLE---AGAAGLRWRAAQLIGTCSQN---VAAIQEQ-- 119 (296)
T ss_dssp HHHHHHHHHHTSHH-HHHHHHH-------TTH---HHHHHHTTTT---CSSHHHHHHHHHHHHHHHTT---CHHHHHH--
T ss_pred HHHHHHHHHHhChh-hHHHHHH-------cCC---HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhC---CHHHHHH--
Confidence 46666666666333 5554432 223 346788 884 78999999988766443322 2334443
Q ss_pred HHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchh-hecccchhhccChhHHHHHHHhhcCCchhHHHHHHhhhe
Q psy8357 113 ALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVM-LYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLL 191 (276)
Q Consensus 113 ~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~m-lYvdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLl 191 (276)
-++..|+..+++.+.. .+....+.-++.|++++. -+..+.+.++.++ .+.-|-.+..|+...|-+.|.-+|-
T Consensus 120 vv~~g~l~~Ll~LL~~------~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~g-gi~~L~~lL~~~d~~v~~~A~~aLs 192 (296)
T 1xqr_A 120 VLGLGALRKLLRLLDR------DACDTVRVKALFAISCLVREQEAGLLQFLRLD-GFSVLMRAMQQQVQKLKVKSAFLLQ 192 (296)
T ss_dssp HHHTTHHHHHHHHHHH------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-HHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcc------CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCC-CHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4567888888887622 112233445666777665 3566666666654 5777777777777777777766664
Q ss_pred eeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhhccCCCCchHHHHHHHHHHHHHhcCCC
Q psy8357 192 IFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIP 253 (276)
Q Consensus 192 Vfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL~~~d~~D~E~~v~amTLiNktL~~~p 253 (276)
=++.-+..+...++ . .|.. ..++++|. +.|.+++-.|...+-..+.+.|
T Consensus 193 ~L~~~~~~~~~~vv-------~-~g~i--~~Lv~LL~---~~d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 193 NLLVGHPEHKGTLC-------S-MGMV--QQLVALVR---TEHSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHHHCGGGHHHHH-------H-TTHH--HHHHHHHT---SCCSTHHHHHHHHHHHHHTTCH
T ss_pred HHHhCChHHHHHHH-------H-cCCH--HHHHHHHc---CCChhHHHHHHHHHHHHHhCCh
Confidence 44333222222222 2 2322 46888896 6789999999988877776644
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=78.86 E-value=7.3 Score=38.96 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=62.6
Q ss_pred hHHHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhc
Q psy8357 70 SNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALG 149 (276)
Q Consensus 70 s~lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~ 149 (276)
..++++|. ++.|.++...|...+-. |+.-+ ...+. -.+..+++.+++.+ .......+..++.+|+
T Consensus 195 ~~Lv~~L~--~~~d~~vr~~Aa~aL~~-Ls~~~---~~~~~--i~~~g~I~~Lv~lL-------~~~~~~v~~~A~~aL~ 259 (780)
T 2z6g_A 195 SAIVRTMQ--NTNDVETARCTSGTLHN-LSHHR---EGLLA--IFKSGGIPALVNML-------GSPVDSVLFHAITTLH 259 (780)
T ss_dssp HHHHHHHH--HCCCHHHHHHHHHHHHH-HHTSH---HHHHH--HHHTTHHHHHHHHT-------TCSCHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHH-HhCCc---hhHHH--HHHcCCHHHHHHHH-------cCCCHHHHHHHHHHHH
Confidence 45677775 24589999998876665 54432 22222 23446777777764 3344556778888999
Q ss_pred chhhecccchhhccChhHHHHHHHhhcCCchhHHHH
Q psy8357 150 QVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKT 185 (276)
Q Consensus 150 q~mlYvdGM~gvi~h~~tvqwLYsL~~S~~rlVvKt 185 (276)
++....+.....+.....|.-|-.+..+....|...
T Consensus 260 nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~ 295 (780)
T 2z6g_A 260 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 295 (780)
T ss_dssp HHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHH
T ss_pred HHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence 888765555455555567777777777655444333
No 33
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=76.30 E-value=24 Score=32.57 Aligned_cols=170 Identities=16% Similarity=0.084 Sum_probs=98.5
Q ss_pred CchhhhHHHHhhcCc-chhHHHHHhhHhheeeeeccchhHHHHHHHHHhhccCCCCCchHHHHhhccCCCCchHHHHHHH
Q psy8357 13 HPPTVQWLYVLVASK-FRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAM 91 (276)
Q Consensus 13 h~~tiqwLy~L~~S~-~rlVvKtaLkLLlVfvey~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~~ds~D~Ellvyam 91 (276)
+.+.++-|.+|..+. .--+...|...|.-++-.......-+.+ ..+..+.|. ..++++|. ++|.+++--|.
T Consensus 281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~--~~v~~~~~l---~~Lv~LL~---~~~~~v~~~A~ 352 (457)
T 1xm9_A 281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQ--LIGLKEKGL---PQIARLLQ---SGNSDVVRSGA 352 (457)
T ss_dssp SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHH--HHHTTSCCH---HHHHHHTT---CSCHHHHHHHH
T ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHH--HHHHHcCCc---hHHHHHHh---CCCHhHHHHHH
Confidence 344445455555432 2334444455554443222111111111 123344443 37899995 57889999888
Q ss_pred HHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccchhhccChhHHHHH
Q psy8357 92 SLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQWL 171 (276)
Q Consensus 92 TLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~gvi~h~~tvqwL 171 (276)
.++-..-. ++ ..-+.++..++..+++.+...+.+ .....+....++++++++.---+-....+....-+.-|
T Consensus 353 ~aL~nls~---~~----~~~~~i~~~~i~~Lv~lL~~~~~~-~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L 424 (457)
T 1xm9_A 353 SLLSNMSR---HP----LLHRVMGNQVFPEVTRLLTSHTGN-TSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNI 424 (457)
T ss_dssp HHHHHHHT---SG----GGHHHHHHHTHHHHHHTTTSCCSC-STTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHH
T ss_pred HHHHHHhc---CH----HHHHHHHHhhhHHHHHhccCCCCC-CCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHH
Confidence 76655433 22 223345668999999986322110 00001123377888888776555555667778889999
Q ss_pred HHhhcCC-chhHHHHHHhhheeeEeecc
Q psy8357 172 YVLVASK-FRLVIKTALKLLLIFVEYVE 198 (276)
Q Consensus 172 YsL~~S~-~rlVvKtaLkLLlVfvey~e 198 (276)
-.|..|+ ...+.|.|..+|--++.+.|
T Consensus 425 ~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 425 INLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 9999998 78899999888876655544
No 34
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=74.93 E-value=11 Score=33.82 Aligned_cols=143 Identities=14% Similarity=0.106 Sum_probs=73.5
Q ss_pred hhhhHHHHhhcCcchhHHHHHhhHhheeeeeccchhHHHHHHHHHhhccCCCCCchHHHHhhccCCCCchHHHHHHHHHH
Q psy8357 15 PTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLL 94 (276)
Q Consensus 15 ~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~~ds~D~EllvyamTLi 94 (276)
+.+.+|..+..++..-|...|...|--++...++|...+.+ . | --..++++|.+. +.+.++...|...+
T Consensus 266 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-------~-~--~v~~L~~ll~~~-~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 266 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ-------V-G--GIEALVRTVLRA-GDREDITEPAICAL 334 (529)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHH-------T-T--HHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-------c-C--ChHHHHHHHHcc-CCHHHHHHHHHHHH
Confidence 34555556655555555555555555444433333333221 1 1 134678888532 23368888877766
Q ss_pred HHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCC-CCCchhhhhhcchhhecccchhhccChhHHHHHHH
Q psy8357 95 NKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSST-DLPTEPLVALGQVMLYVDGMTGIMDHPPTVQWLYV 173 (276)
Q Consensus 95 NktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~t-n~q~YiLrAl~q~mlYvdGM~gvi~h~~tvqwLYs 173 (276)
-.-..+-|+.+...+. -.+..|++.+++.+ ..++. +.+.-+..+++++....+....++ ....+..|-.
T Consensus 335 ~nl~~~~~~~~~~~~~--i~~~~~i~~L~~lL-------~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~-~~~~i~~L~~ 404 (529)
T 1jdh_A 335 RHLTSRHQEAEMAQNA--VRLHYGLPVVVKLL-------HPPSHWPLIKATVGLIRNLALCPANHAPLR-EQGAIPRLVQ 404 (529)
T ss_dssp HHHTSSSTTHHHHHHH--HHHTTCHHHHHHTT-------STTCCHHHHHHHHHHHHHHTTSGGGHHHHH-HTTHHHHHHH
T ss_pred HHHHcCCchHHHHHHH--HHHcCChhHHHHHh-------ccccchHHHHHHHHHHHHHhcChhhhHHHH-HcCCHHHHHH
Confidence 5544443432212222 34567788877775 22222 344556667777766554443333 3345555555
Q ss_pred hhcCC
Q psy8357 174 LVASK 178 (276)
Q Consensus 174 L~~S~ 178 (276)
+..+.
T Consensus 405 ll~~~ 409 (529)
T 1jdh_A 405 LLVRA 409 (529)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 35
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=73.95 E-value=13 Score=34.71 Aligned_cols=203 Identities=15% Similarity=0.127 Sum_probs=113.0
Q ss_pred CchhhhHHHHhhcCcchhHHHHHhhHhheeeeeccchhHHHHHHHHHhhccCCCCCchHHHHhhccCCCCchHHHHHHHH
Q psy8357 13 HPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMS 92 (276)
Q Consensus 13 h~~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~~ds~D~EllvyamT 92 (276)
....+.-|..|..|+..-|...|+..|--++-.++.+...+++ ..+. ..++++|. +++.++.-.|..
T Consensus 272 ~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~-------~g~l---~~L~~LL~---~~~~~v~~~A~~ 338 (510)
T 3ul1_B 272 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-------AGAL---AVFPSLLT---NPKTNIQKEATW 338 (510)
T ss_dssp TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-------TTGG---GGCC-CTT---CSSHHHHHHHHH
T ss_pred hcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhh-------ccch---HHHHHHhc---CCCHHHHHHHHH
Confidence 3445677778888877777777887776665555555554443 2222 34667774 577888877665
Q ss_pred HHHHhhCCCCCCchhhHHHHHHH-HhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccch-hhccChhHHHH
Q psy8357 93 LLNKTLNGIPDQDSYYDQVDALE-EQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMT-GIMDHPPTVQW 170 (276)
Q Consensus 93 LiNktL~~lpDqDs~yD~~d~Le-~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~-gvi~h~~tvqw 170 (276)
.+-.-.++-+ +....+. ..++..+++.+ ..+..+.+..+..|++++...-+--+ ..+-+...|+-
T Consensus 339 aL~nl~a~~~------~~~~~v~~~g~i~~Lv~lL-------~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~ 405 (510)
T 3ul1_B 339 TMSNITAGRQ------DQIQQVVNHGLVPFLVGVL-------SKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEP 405 (510)
T ss_dssp HHHHHTTSCH------HHHHHHHHTTHHHHHHHHH-------HSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCcH------HHHHHHHhcCCHHHHHHHH-------cCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHH
Confidence 4433333222 2233333 34455555553 33344555666777777665322111 11334567788
Q ss_pred HHHhhcCCchhHHHHHHhhheeeEeeccC--chHHHHHHHHHhhhcCCCCCchHHHHhhccCCCCchHHHHHHHHHHHHH
Q psy8357 171 LYVLVASKFRLVIKTALKLLLIFVEYVES--NCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLNKT 248 (276)
Q Consensus 171 LYsL~~S~~rlVvKtaLkLLlVfvey~e~--n~~l~~~Av~~v~~~~~~~pwsnlm~lL~~~d~~D~E~~v~amTLiNkt 248 (276)
|..|..++...+++.+|+.|--++.+.+. +..-+.. .+....| ...| +-|. ...+.|+.-.|..+|++-
T Consensus 406 L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~---~iee~gg---l~~i-e~Lq--~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 406 LMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSI---MIEECGG---LDKI-EALQ--RHENESVYKASLNLIEKY 476 (510)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHH---HHHHTTH---HHHH-HHGG--GCSSHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHH---HHHHcCc---HHHH-HHHH--cCCCHHHHHHHHHHHHHH
Confidence 88999887777777777665444333321 1111111 1222222 1222 3333 356889999999999998
Q ss_pred hc
Q psy8357 249 LN 250 (276)
Q Consensus 249 L~ 250 (276)
+.
T Consensus 477 f~ 478 (510)
T 3ul1_B 477 FS 478 (510)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 36
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=68.74 E-value=11 Score=34.39 Aligned_cols=160 Identities=14% Similarity=0.068 Sum_probs=94.3
Q ss_pred HHHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCC--CCCchhhhhh
Q psy8357 71 NIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSST--DLPTEPLVAL 148 (276)
Q Consensus 71 ~lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~t--n~q~YiLrAl 148 (276)
.++++|. .+++.+++-.|...+ ..|+...+ +.--.+ ..+..++..+++.+... ..+. +.+..+..+|
T Consensus 174 ~Lv~lL~--~~~~~~~~~~A~~aL-~nLs~~~~-~nk~~i--~~~~Gai~~Lv~lL~~~-----~~~~~~~v~~~A~~aL 242 (354)
T 3nmw_A 174 ALMECAL--EVKKESTLKSVLSAL-WNLSAHCT-ENKADI--CAVDGALAFLVGTLTYR-----SQTNTLAIIESGGGIL 242 (354)
T ss_dssp HHHHHHH--HCCCHHHHHHHHHHH-HHHHTTCH-HHHHHH--HHSTTHHHHHHHHTTCC-----CSSSCCHHHHHHHHHH
T ss_pred HHHHHHh--cCCCHHHHHHHHHHH-HHHHccCh-hhhHHH--HHhcCcHHHHHHHhccC-----CCcccHHHHHHHHHHH
Confidence 4777653 256778877665432 12332111 111122 22567888888775211 0111 1344456667
Q ss_pred cchhhe----cccchhhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHH
Q psy8357 149 GQVMLY----VDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIM 224 (276)
Q Consensus 149 ~q~mlY----vdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm 224 (276)
+++-.| .++...|+ ....|..|-.|..+.-..+.+.|...|.-++-.++.+...+ ..+.+. ..|+
T Consensus 243 ~nLs~~~a~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i-------~~~G~i---~~Lv 311 (354)
T 3nmw_A 243 RNVSSLIATNEDHRQILR-ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL-------WDMGAV---SMLK 311 (354)
T ss_dssp HHHHHHHTTCHHHHHHHH-TTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHH-------HHTTHH---HHHH
T ss_pred HHHHhhccCCHHHHHHHH-HcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHH-------HHCCCH---HHHH
Confidence 776653 34444444 45568888888888777788999988877764333332222 222222 2578
Q ss_pred HhhccCCCCchHHHHHHHHHHHHHhcCCCCC
Q psy8357 225 RLLTDRDSTDTELLIYAMSLLNKTLNGIPDQ 255 (276)
Q Consensus 225 ~lL~~~d~~D~E~~v~amTLiNktL~~~pdq 255 (276)
++|. +++.+++-+|...+-..+.+-|++
T Consensus 312 ~LL~---s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 312 NLIH---SKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp TTTT---CSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHh---CCCHHHHHHHHHHHHHHHcCCHHH
Confidence 8886 778999999988888888886654
No 37
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=62.15 E-value=13 Score=38.43 Aligned_cols=135 Identities=13% Similarity=0.137 Sum_probs=90.7
Q ss_pred HHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccchhhccChhHHHHHHHhhcCCchhHHHHHHhhheee
Q psy8357 114 LEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIF 193 (276)
Q Consensus 114 Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVf 193 (276)
++..|+..+++-+ ..++...|.-+.++++++....+....++...+.++-|-.|.+|.-..+-+.|...|--.
T Consensus 620 i~aG~l~~Lv~LL-------~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanL 692 (810)
T 3now_A 620 IKEQGVSKIEYYL-------MEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAII 692 (810)
T ss_dssp HHTTHHHHHHHHH-------HSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHH-------cCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4567777777764 334456677788999999988887777775467899999999998888888887766555
Q ss_pred EeeccCchHHHHHHHHHhhh-cCCCCCchHHHHhhccCCCCchHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHhhHHH
Q psy8357 194 VEYVESNCFLLIQAVHAVDN-SNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAA 272 (276)
Q Consensus 194 vey~e~n~~l~~~Av~~v~~-~~~~~pwsnlm~lL~~~d~~D~E~~v~amTLiNktL~~~pdqds~yd~~d~le~~Gme~ 272 (276)
+..++ ..++.+-. +.+. ..|+++|. ++|.+++-.|...+-....+-+ +....+.+.|.-.
T Consensus 693 t~~s~-------~~~~~ii~~~g~I---~~Lv~LL~---s~d~~vq~~A~~aL~NL~~~s~------e~~~~l~e~G~i~ 753 (810)
T 3now_A 693 TSVSV-------KCCEKILAIASWL---DILHTLIA---NPSPAVQHRGIVIILNMINAGE------EIAKKLFETDIME 753 (810)
T ss_dssp HHHCH-------HHHHHHHTSTTHH---HHHHHHHT---CSSHHHHHHHHHHHHHHHTTCH------HHHHHHHTSTHHH
T ss_pred hCCCH-------HHHHHHHHHcCCH---HHHHHHHC---CCCHHHHHHHHHHHHHHHhCCH------HHHHHHHHCCCHH
Confidence 44322 12333333 3333 36889996 7899999998877765555422 3445666666544
Q ss_pred HH
Q psy8357 273 VI 274 (276)
Q Consensus 273 i~ 274 (276)
.+
T Consensus 754 ~L 755 (810)
T 3now_A 754 LL 755 (810)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 38
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=60.47 E-value=1.2e+02 Score=29.12 Aligned_cols=64 Identities=13% Similarity=0.091 Sum_probs=42.5
Q ss_pred cccCCCCCCchhhhhhcchhhecccchhhccChhHHH----HHHHhhcCCchhHHHHHHhhheeeEeeccCchHHHHHH
Q psy8357 133 YTTSSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQ----WLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQA 207 (276)
Q Consensus 133 ~~~~~tn~q~YiLrAl~q~mlYvdGM~gvi~h~~tvq----wLYsL~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~A 207 (276)
+..++.|.+-.+|++++.+.-- ||+.++ .++.....+...|-+.||++|.-.++ ++|..-++.-
T Consensus 322 L~~~d~~vr~~aL~~L~~i~~~---------~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~--~~nv~~iv~e 389 (618)
T 1w63_A 322 LLNNDKNIRYVALTSLLKTVQT---------DHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVN--GNNIRGMMKE 389 (618)
T ss_dssp HTCSSTTTHHHHHHHHHHHHHH---------HHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCC--SSSTHHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHHhh---------CHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc--cccHHHHHHH
Confidence 4556678887788888777532 344442 44445556668899999999988865 6676655543
No 39
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=59.55 E-value=3.1 Score=37.31 Aligned_cols=147 Identities=17% Similarity=0.188 Sum_probs=85.4
Q ss_pred CCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccc-h
Q psy8357 81 STDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGM-T 159 (276)
Q Consensus 81 s~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM-~ 159 (276)
+++.|-.+-|+-.+-.-+..++ . ..+.....|+..+++++ +..+..+.+.++.++++.+---.+.- +
T Consensus 51 ~~~~e~k~~Al~~L~~lv~~~d---n---a~~~~~~G~l~~Lv~~l------L~s~~~~vr~~Aa~~Lg~ia~~n~~~~~ 118 (296)
T 1xqr_A 51 AADQQEREGALELLADLCENMD---N---AADFCQLSGMHLLVGRY------LEAGAAGLRWRAAQLIGTCSQNVAAIQE 118 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHH---H---HHHHHHTTHHHHHHHTT------TTCSSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhChh---h---HHHHHHcCCHHHHHHHH------HcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4555666666554444333222 1 11223456777777744 44556677788888888776433322 2
Q ss_pred hhccChhHHHHHHHhhcC-CchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhhccCCCCchHHH
Q psy8357 160 GIMDHPPTVQWLYVLVAS-KFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELL 238 (276)
Q Consensus 160 gvi~h~~tvqwLYsL~~S-~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL~~~d~~D~E~~ 238 (276)
.|+++ ..+.-|-.|..| +-..|.+.|+..|=-+|- +|.+ +.+.+..+.| +..++++|. ++|.+++
T Consensus 119 ~vv~~-g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~---~~~~----~~~~~~~~gg---i~~L~~lL~---~~d~~v~ 184 (296)
T 1xqr_A 119 QVLGL-GALRKLLRLLDRDACDTVRVKALFAISCLVR---EQEA----GLLQFLRLDG---FSVLMRAMQ---QQVQKLK 184 (296)
T ss_dssp HHHHT-THHHHHHHHHHHCSCHHHHHHHHHHHHHHHT---TCHH----HHHHHHHTTH---HHHHHHHHH---SSCHHHH
T ss_pred HHHHC-CCHHHHHHHHccCCCHHHHHHHHHHHHHHHc---CCcH----HHHHHHHCCC---HHHHHHHHc---CCCHHHH
Confidence 23333 456666677764 345666767666644432 1111 2222333333 557889996 5799999
Q ss_pred HHHHHHHHHHhcCCC
Q psy8357 239 IYAMSLLNKTLNGIP 253 (276)
Q Consensus 239 v~amTLiNktL~~~p 253 (276)
..|..+|-....+-|
T Consensus 185 ~~A~~aLs~L~~~~~ 199 (296)
T 1xqr_A 185 VKSAFLLQNLLVGHP 199 (296)
T ss_dssp HHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhCCh
Confidence 999999988777633
No 40
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=54.69 E-value=67 Score=30.59 Aligned_cols=32 Identities=13% Similarity=0.319 Sum_probs=22.1
Q ss_pred ch-HHHHhhccCCCCchHHHHHHHHHHHHhhCCCCC
Q psy8357 69 WS-NIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPD 103 (276)
Q Consensus 69 ws-~lm~lL~~~ds~D~EllvyamTLiNktL~~lpD 103 (276)
|- .+.++|. ..|..+...|..+++.-...-|+
T Consensus 161 ~~~~l~~lL~---d~d~~V~~~A~~aL~~i~~~~~~ 193 (591)
T 2vgl_B 161 FLDSLRDLIA---DSNPMVVANAVAALSEISESHPN 193 (591)
T ss_dssp HHHHHHHTTS---CSCHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHhC---CCChhHHHHHHHHHHHHHhhCCC
Confidence 53 3445553 47889999999999887655443
No 41
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=54.12 E-value=30 Score=33.04 Aligned_cols=33 Identities=21% Similarity=0.117 Sum_probs=22.6
Q ss_pred hhhhHHHHhhcCcchhHHHHHhhHhheeeeecc
Q psy8357 15 PTVQWLYVLVASKFRLVIKTALKLLLIFVEYVE 47 (276)
Q Consensus 15 ~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e 47 (276)
+.+.-|..+..++.-.|+..|+.+|--+++.+.
T Consensus 160 ~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 160 GFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred cHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 345567777777777777777777776665544
No 42
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=52.55 E-value=10 Score=39.34 Aligned_cols=166 Identities=11% Similarity=0.110 Sum_probs=113.8
Q ss_pred ccccCchhhhHHHHhhcCcchhHHHHHhhHhheeeeeccchhHHHHHHHHHhhccCCCCCchHHHHhhccCCCCchHHHH
Q psy8357 9 GIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLI 88 (276)
Q Consensus 9 gvi~h~~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~~ds~D~Ellv 88 (276)
.++...+.+.-|..|+.|+...+.+-|++++.-.+.- +.+...+++ .|. | .+.+++. +++.++..
T Consensus 284 ~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~--------~gv-~--~L~~Ll~---s~~~~vr~ 348 (810)
T 3now_A 284 QVVAREGILQMILAMATTDDELQQRVACECLIAASSK-KDKAKALCE--------QGV-D--ILKRLYH---SKNDGIRV 348 (810)
T ss_dssp HHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHH--------HHH-H--HHHHHTT---CSCHHHHH
T ss_pred HHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHH--------cCc-H--HHHHHHc---CCCHHHHH
Confidence 4455678889999999999999999999998887554 333333333 233 3 4788885 46678888
Q ss_pred HHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccC--CCCCCchhhhhhcchhhecccchhhccChh
Q psy8357 89 YAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTS--STDLPTEPLVALGQVMLYVDGMTGIMDHPP 166 (276)
Q Consensus 89 yamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~--~tn~q~YiLrAl~q~mlYvdGM~gvi~h~~ 166 (276)
.|..-+-|.=..- +.|.- ...+++.+++.+++.+.+- +..+ +.+.+..+..||.-+-...+--..++....
T Consensus 349 ~Al~~L~kl~s~~-~~d~~---~~~~~~g~i~~Lv~~l~~l---L~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g 421 (810)
T 3now_A 349 RALVGLCKLGSYG-GQDAA---IRPFGDGAALKLAEACRRF---LIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKA 421 (810)
T ss_dssp HHHHHHHHHHTTT-TTTTS---CCSSTTTHHHHHHHHHHHH---HHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHHHHhcccc-ccCcc---ccchhhccHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccc
Confidence 8888666653211 11110 1122344555555443221 3333 456677788888888888888888888999
Q ss_pred HHHHHHHhhcCCchhHHHHHHhhheeeEee
Q psy8357 167 TVQWLYVLVASKFRLVIKTALKLLLIFVEY 196 (276)
Q Consensus 167 tvqwLYsL~~S~~rlVvKtaLkLLlVfvey 196 (276)
.|+-|..|..|....+...|+..|--++.-
T Consensus 422 ~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~ 451 (810)
T 3now_A 422 SIHALMDLARGGNQSCLYGVVTTFVNLCNA 451 (810)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHTTC
T ss_pred hHHHHHHHhCCCChHHHHHHHHHHHHHcCC
Confidence 999999999998888999999988877763
No 43
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=50.09 E-value=18 Score=33.12 Aligned_cols=151 Identities=14% Similarity=0.101 Sum_probs=88.0
Q ss_pred HHHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcc
Q psy8357 71 NIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQ 150 (276)
Q Consensus 71 ~lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q 150 (276)
.++++|. ++|.|++..|...+ ..|+.-+ .+...+.+ .+..|+..+++.+.+. .+.+.+.-+++|+++
T Consensus 131 ~LV~LL~---s~~~~v~~~A~~aL-~nLs~~~-~~~~k~~i--~~~G~Ip~Lv~lL~~~------~~~~~~~~A~~aL~n 197 (354)
T 3nmw_A 131 ALVAQLK---SESEDLQQVIASVL-RNLSWRA-DVNSKKTL--REVGSVKALMECALEV------KKESTLKSVLSALWN 197 (354)
T ss_dssp HHHHGGG---CSCHHHHHHHHHHH-HHHHTTC-CHHHHHHH--HHTTHHHHHHHHHHHC------CCHHHHHHHHHHHHH
T ss_pred HHHHHHC---CCCHHHHHHHHHHH-HHHhccC-CHHHHHHH--HHCCCHHHHHHHHhcC------CCHHHHHHHHHHHHH
Confidence 4667774 68899999887644 2333222 23344442 4667899988875322 222344556677777
Q ss_pred hhhecccch-hhccChhHHHHHHHhhcCCch----hHHHHHHhhheeeEee---ccCchHHHHHHHHHhhhcCCCCCchH
Q psy8357 151 VMLYVDGMT-GIMDHPPTVQWLYVLVASKFR----LVIKTALKLLLIFVEY---VESNCFLLIQAVHAVDNSNGEPPWSN 222 (276)
Q Consensus 151 ~mlYvdGM~-gvi~h~~tvqwLYsL~~S~~r----lVvKtaLkLLlVfvey---~e~n~~l~~~Av~~v~~~~~~~pwsn 222 (276)
+-...++-. .+......|.-|-.|..++.. .|.+.|.-.|--++.| .+.| .+.+..+.+ ...
T Consensus 198 Ls~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~-------~~~i~~~g~---i~~ 267 (354)
T 3nmw_A 198 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH-------RQILRENNC---LQT 267 (354)
T ss_dssp HHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH-------HHHHHTTTH---HHH
T ss_pred HHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH-------HHHHHHcCC---HHH
Confidence 766554433 334366777888777776443 3667676666544332 1111 112222222 356
Q ss_pred HHHhhccCCCCchHHHHHHHHHHHH
Q psy8357 223 IMRLLTDRDSTDTELLIYAMSLLNK 247 (276)
Q Consensus 223 lm~lL~~~d~~D~E~~v~amTLiNk 247 (276)
++++|. +++.+++-+|...|-.
T Consensus 268 Lv~lL~---~~~~~v~~~A~~aL~n 289 (354)
T 3nmw_A 268 LLQHLK---SHSLTIVSNACGTLWN 289 (354)
T ss_dssp HHHHTT---CSCHHHHHHHHHHHHH
T ss_pred HHHHHc---CCChHHHHHHHHHHHH
Confidence 899996 6788999988765533
No 44
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=47.27 E-value=45 Score=30.74 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=80.2
Q ss_pred HHHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcc
Q psy8357 71 NIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQ 150 (276)
Q Consensus 71 ~lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q 150 (276)
.++++|. ++|.+++..|...+-+-+. .+++.-..+ .+..|+..+++.+ ..++.+.|..+..||+.
T Consensus 6 ~lv~~L~---s~~~~~q~~A~~~L~~l~~--~~~~~~~~i---~~~g~i~~Lv~lL-------~s~~~~~~~~A~~aL~n 70 (457)
T 1xm9_A 6 KAVQYLS---SQDEKYQAIGAYYIQHTCF--QDESAKQQV---YQLGGICKLVDLL-------RSPNQNVQQAAAGALRN 70 (457)
T ss_dssp HHHHHHH---SSCTHHHHHHHHHHHHHTS--SCSSHHHHH---HHTTHHHHHHHHT-------TSSCHHHHHHHHHHHHH
T ss_pred HHHHHHC---CCCHHHHHHHHHHHHHHHc--CChHHHHHH---HHcCCHHHHHHHH-------cCCCHHHHHHHHHHHHH
Confidence 4778885 6789999999987777442 222211123 4668888888885 33444567788888888
Q ss_pred hhhecccchhhccChhHHHHHHHhhc-CCchhHHHHHHhhheeeEeeccCchHHHH
Q psy8357 151 VMLYVDGMTGIMDHPPTVQWLYVLVA-SKFRLVIKTALKLLLIFVEYVESNCFLLI 205 (276)
Q Consensus 151 ~mlYvdGM~gvi~h~~tvqwLYsL~~-S~~rlVvKtaLkLLlVfvey~e~n~~l~~ 205 (276)
+-...+.-...|....-|.-|-.|.. |....+.+.|...|.-.+.. +.|...++
T Consensus 71 La~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~ 125 (457)
T 1xm9_A 71 LVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELI 125 (457)
T ss_dssp HHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHH
T ss_pred HhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHH
Confidence 87753444455555577888888888 77788888888888776655 44555443
No 45
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=44.83 E-value=13 Score=37.05 Aligned_cols=120 Identities=13% Similarity=0.170 Sum_probs=79.6
Q ss_pred CchHHHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHH-HHhhHHHHHHhhhhcCCccccCCCCCCchhhh
Q psy8357 68 PWSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDAL-EEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLV 146 (276)
Q Consensus 68 pws~lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~L-e~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLr 146 (276)
-|..++++|. +.|.++...|.+.+..-... +.... .-. ...++..+++.+.+. +..+.+..+.+
T Consensus 151 ~ip~Lv~lL~---~~d~~vr~~A~~~L~~L~~~----~~~~~--~i~~~~~~i~~Lv~~L~~~------~d~~vr~~Aa~ 215 (780)
T 2z6g_A 151 AIPELTKLLN---DEDQVVVNKAAVMVHQLSKK----EASRH--AIMRSPQMVSAIVRTMQNT------NDVETARCTSG 215 (780)
T ss_dssp HHHHHHHHHH---CSCHHHHHHHHHHHHHHHTS----HHHHH--HHTTCHHHHHHHHHHHHHC------CCHHHHHHHHH
T ss_pred CHHHHHHHHC---CCCHHHHHHHHHHHHHHhCC----ChhHH--HHHhccChHHHHHHHHcCC------CCHHHHHHHHH
Confidence 4788999996 46889999998877764432 11111 111 124677777775221 13345567778
Q ss_pred hhcchhhecccchhhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeeccCchHH
Q psy8357 147 ALGQVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFL 203 (276)
Q Consensus 147 Al~q~mlYvdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~e~n~~l 203 (276)
+|+.+-...++-..+.+ ...|+.|-.+..+....|.+.|+..|.-++...+.+...
T Consensus 216 aL~~Ls~~~~~~~~i~~-~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 271 (780)
T 2z6g_A 216 TLHNLSHHREGLLAIFK-SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271 (780)
T ss_dssp HHHHHHTSHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred HHHHHhCCchhHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 88886555555445555 488999999999988999999999998887765544433
No 46
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=43.94 E-value=25 Score=33.52 Aligned_cols=150 Identities=14% Similarity=0.101 Sum_probs=88.8
Q ss_pred HHHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcc
Q psy8357 71 NIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQ 150 (276)
Q Consensus 71 ~lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q 150 (276)
.++++|. ++|.|++..|...+ ..|+.-+ .+...+.+ .+..|+..+++.+.+ ..+.+.+.-+++|+++
T Consensus 247 ~LV~LL~---s~~~~v~~~A~~aL-~nLs~~~-~~~~k~~I--~~~GaI~~LV~lLl~------s~~~~v~~~A~~aL~n 313 (458)
T 3nmz_A 247 ALVAQLK---SESEDLQQVIASVL-RNLSWRA-DVNSKKTL--REVGSVKALMECALE------VKKESTLKSVLSALWN 313 (458)
T ss_dssp HHHHGGG---CSCHHHHHHHHHHH-HHHTSSC-CHHHHHHH--HHTTHHHHHHHHHTT------CCSHHHHHHHHHHHHH
T ss_pred HHHHHHh---CCCHHHHHHHHHHH-HHHhcCC-CHHHHHHH--HHcCCHHHHHHHHhc------CCCHHHHHHHHHHHHH
Confidence 4667774 68899999988744 2233322 23333432 467889999987522 2223445566778887
Q ss_pred hhhecccc-hhhccChhHHHHHHHhhcCCch----hHHHHHHhhheeeEee---ccCchHHHHHHHHHhhhcCCCCCchH
Q psy8357 151 VMLYVDGM-TGIMDHPPTVQWLYVLVASKFR----LVIKTALKLLLIFVEY---VESNCFLLIQAVHAVDNSNGEPPWSN 222 (276)
Q Consensus 151 ~mlYvdGM-~gvi~h~~tvqwLYsL~~S~~r----lVvKtaLkLLlVfvey---~e~n~~l~~~Av~~v~~~~~~~pwsn 222 (276)
+-.+.++- ..+..+...|.-|-.|..++.. .+.+.|...|--...| .+.| .+.+..+.+. ..
T Consensus 314 Ls~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~-------~~~i~~~G~i---~~ 383 (458)
T 3nmz_A 314 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH-------RQILRENNCL---QT 383 (458)
T ss_dssp HHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH-------HHHHHHTTHH---HH
T ss_pred HccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH-------HHHHHHcccH---HH
Confidence 77645443 3344467788888888776543 3677776666444332 1111 1122222332 35
Q ss_pred HHHhhccCCCCchHHHHHHHHHHH
Q psy8357 223 IMRLLTDRDSTDTELLIYAMSLLN 246 (276)
Q Consensus 223 lm~lL~~~d~~D~E~~v~amTLiN 246 (276)
++++|. +++.+++.+|...|-
T Consensus 384 Lv~LL~---~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 384 LLQHLK---SHSLTIVSNACGTLW 404 (458)
T ss_dssp HHHHSS---CSCHHHHHHHHHHHH
T ss_pred HHHHHc---CCChHHHHHHHHHHH
Confidence 899996 678899998876543
No 47
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=39.06 E-value=55 Score=31.30 Aligned_cols=118 Identities=13% Similarity=0.157 Sum_probs=67.8
Q ss_pred CchHHHHhhccC-CCC-chHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccC--CCCCCch
Q psy8357 68 PWSNIMRLLTDR-DST-DTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTS--STDLPTE 143 (276)
Q Consensus 68 pws~lm~lL~~~-ds~-D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~--~tn~q~Y 143 (276)
.|..++..|.+. .++ |.+..-.|+..+..-+..++++.. + -+.-.+.+++.+.+. +..+ +.+.+.-
T Consensus 131 ~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~---~----~~~~~~~ll~~l~~~---l~~~~~~~~vr~~ 200 (861)
T 2bpt_A 131 AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ---A----LVSSSNNILIAIVQG---AQSTETSKAVRLA 200 (861)
T ss_dssp CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS---T----TGGGHHHHHHHHHHH---HSTTCCCHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhh---H----HHHHHHHHHHHHHHh---hcCCCCCHHHHHH
Confidence 698887766432 234 778888888888877776654311 0 011233333332110 1222 2334566
Q ss_pred hhhhhcchhheccc-chhhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEe
Q psy8357 144 PLVALGQVMLYVDG-MTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVE 195 (276)
Q Consensus 144 iLrAl~q~mlYvdG-M~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfve 195 (276)
++++++.++-|.++ +..-...+..++-|..+..++...+-+.|++.|--+++
T Consensus 201 al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~ 253 (861)
T 2bpt_A 201 ALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS 253 (861)
T ss_dssp HHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 78888887766542 22111235678888888877777777888887755544
No 48
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=38.39 E-value=59 Score=31.91 Aligned_cols=160 Identities=14% Similarity=0.089 Sum_probs=91.2
Q ss_pred cCchhhhHHHHhhcCcchhHHHHHhhHhheeeeeccchhHHHHHHHHHhhccCCCCCchHHHHhhc-cCCCCchHHHHHH
Q psy8357 12 DHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLT-DRDSTDTELLIYA 90 (276)
Q Consensus 12 ~h~~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~-~~ds~D~Ellvya 90 (276)
.-|+.+..|.++..|+...+..+|+..|--++|-.... .+...-..++..++..|. --.+.+.++...|
T Consensus 125 ~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~----------~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A 194 (852)
T 4fdd_A 125 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI----------LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHA 194 (852)
T ss_dssp TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH----------HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHH
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH----------hchhhhcchHHHHHHHHHHHhcCCCHHHHHHH
Confidence 45788999999999988888888888877665432221 111122344555443331 1134688999999
Q ss_pred HHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhe-cccchhhccChhHHH
Q psy8357 91 MSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLY-VDGMTGIMDHPPTVQ 169 (276)
Q Consensus 91 mTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlY-vdGM~gvi~h~~tvq 169 (276)
+..++.-+...| +.+.+..+ .-+..+++.. ..+..+.+..++++++.+.-. .+-+...+ +++++
T Consensus 195 ~~aL~~~~~~~~--~~~~~~~~----~~l~~l~~~~-------~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~ 259 (852)
T 4fdd_A 195 VACVNQFIISRT--QALMLHID----SFIENLFALA-------GDEEPEVRKNVCRALVMLLEVRMDRLLPHM--HNIVE 259 (852)
T ss_dssp HHHHHTTTTTTC--HHHHTSHH----HHHHHHHHHH-------TCCCHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHH
T ss_pred HHHHHHHHhccc--HHHHHHHH----HHHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHH
Confidence 998887665544 22222111 1123333332 112223344556666665542 22122111 35677
Q ss_pred HHHHhhcCCchhHHHHHHhhheeeEee
Q psy8357 170 WLYVLVASKFRLVIKTALKLLLIFVEY 196 (276)
Q Consensus 170 wLYsL~~S~~rlVvKtaLkLLlVfvey 196 (276)
.+..+..++...|...|++.+.-++|.
T Consensus 260 ~l~~~~~~~~~~vr~~a~e~l~~l~~~ 286 (852)
T 4fdd_A 260 YMLQRTQDQDENVALEACEFWLTLAEQ 286 (852)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence 777887777788888888888777753
No 49
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=36.28 E-value=3e+02 Score=27.19 Aligned_cols=107 Identities=19% Similarity=0.157 Sum_probs=65.1
Q ss_pred CCchHHHHhhccCCCCchHHHHHHHHHHHHhh----CCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCc
Q psy8357 67 PPWSNIMRLLTDRDSTDTELLIYAMSLLNKTL----NGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPT 142 (276)
Q Consensus 67 ~pws~lm~lL~~~ds~D~EllvyamTLiNktL----~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~ 142 (276)
-.|.....+|. .+.+.++..+|..++.+.+ +.+|+++.-+ +.+.=++.+++. + +.+.
T Consensus 57 ~~~~~~~~lL~--~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~-----ir~~ll~~l~~~----------~--~~~~ 117 (963)
T 2x19_B 57 QAWHFSWQLLQ--PDKVPEIQYFGASALHIKISRYWSDIPTDQYES-----LKAQLFTQITRF----------A--SGSK 117 (963)
T ss_dssp THHHHHHHHTS--TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHH-----HHHHHHHHHHHT----------T--TSCH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHH-----HHHHHHHHHHHH----------c--CCCH
Confidence 36888899986 3679999999988777665 3566543211 111112222211 1 1236
Q ss_pred hhhhhhcchhhec---ccchhhccChhHHHHHHHhhcC-----CchhHHHHHHhhheeeEe
Q psy8357 143 EPLVALGQVMLYV---DGMTGIMDHPPTVQWLYVLVAS-----KFRLVIKTALKLLLIFVE 195 (276)
Q Consensus 143 YiLrAl~q~mlYv---dGM~gvi~h~~tvqwLYsL~~S-----~~rlVvKtaLkLLlVfve 195 (276)
++.+.+.+++.-. |.++ +-|+.+..|.++..| +-...+..++++|-+++|
T Consensus 118 ~ir~kl~~~la~i~~~~~p~---~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~e 175 (963)
T 2x19_B 118 IVLTRLCVALASLALSMMPD---AWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPE 175 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTTT---TSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcc---ccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHH
Confidence 6666666554422 3333 368999999998876 233467888888888875
No 50
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=35.46 E-value=23 Score=33.87 Aligned_cols=114 Identities=15% Similarity=0.173 Sum_probs=74.2
Q ss_pred chHHHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHH-HhhHHHHHHhhhhcCCccccCCCCCCchhhhh
Q psy8357 69 WSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALE-EQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVA 147 (276)
Q Consensus 69 ws~lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le-~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrA 147 (276)
...++++|. +.|.++...|...+......-+ .... ..+ ..+++.+++.+.. ....+.+..+.++
T Consensus 16 i~~Lv~lL~---~~~~~vr~~A~~~L~~La~~~~----~~~~--i~~~~~~i~~Lv~~L~~------~~~~~~~~~A~~~ 80 (644)
T 2z6h_A 16 IPELTKLLN---DEDQVVVNKAAVMVHQLSKKEA----SRHA--IMRSPQMVSAIVRTMQN------TNDVETARCTAGT 80 (644)
T ss_dssp HHHHHHHHT---CSCHHHHHHHHHHHHHHHTSTT----HHHH--HTTCHHHHHHHHHHHHS------CCCHHHHHHHHHH
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHHCCCh----hHHH--HHhccChHHHHHHHHhc------CCCHHHHHHHHHH
Confidence 567889995 5789999999988877654332 1111 112 3567787877621 1233455566677
Q ss_pred hcchhhecccchhhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeecc
Q psy8357 148 LGQVMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVE 198 (276)
Q Consensus 148 l~q~mlYvdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~e 198 (276)
++.+-...++...+.+. ..|..|-.+..|+...|.+.|+..|.-++...+
T Consensus 81 L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~ 130 (644)
T 2z6h_A 81 LHNLSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 130 (644)
T ss_dssp HHHHTTSHHHHHHHHTT-THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHST
T ss_pred HHHHhcChhhHHHHHHc-CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Confidence 77665555655555655 778888888888877787888777766655443
No 51
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=34.95 E-value=3e+02 Score=26.71 Aligned_cols=188 Identities=15% Similarity=0.150 Sum_probs=94.7
Q ss_pred CchhhhHHHHhhcCcchhHHHHHhhHhheeeeeccchh-HHHHHHHH---HhhccCCC-----------CCch--HHHHh
Q psy8357 13 HPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNC-FLLIQAVH---AVDNSNGE-----------PPWS--NIMRL 75 (276)
Q Consensus 13 h~~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~n~-~lli~Av~---~v~~~~g~-----------~pws--~lm~l 75 (276)
.++.+.-|.++.+.+.-.|+-.|+-++.-.++.+..++ +++..+++ .+-.+... -||. .++++
T Consensus 185 ~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~l 264 (621)
T 2vgl_A 185 MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRL 264 (621)
T ss_dssp CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHH
T ss_pred chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHH
Confidence 34566778889988888999999988776655444332 22333333 22222223 3786 34555
Q ss_pred hccCCC-CchHHHHHHH----HHHHHhhCCCCCC----------chhhHHHHH---------HHHhhHHHHHHhhhhcCC
Q psy8357 76 LTDRDS-TDTELLIYAM----SLLNKTLNGIPDQ----------DSYYDQVDA---------LEEQGIAAVIRSLDQHGI 131 (276)
Q Consensus 76 L~~~ds-~D~Ellvyam----TLiNktL~~lpDq----------Ds~yD~~d~---------Le~~Gme~i~~~~~~~~~ 131 (276)
|..... .|.|..-... .++|.+.. .|.+ .-.|..+.+ +-.+....+ .++
T Consensus 265 l~~~~~~~d~~~~~~l~~~L~~il~~~~~-~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L-~~~----- 337 (621)
T 2vgl_A 265 LQCYPPPEDPAVRGRLTECLETILNKAQE-PPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQL-GQF----- 337 (621)
T ss_dssp GGGSSSCSSHHHHHHHHHHHHHHHHHHHS-CCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHH-----
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHhhcc-CcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHH-HHH-----
Confidence 543322 2334322211 22322211 1100 001111111 112222222 222
Q ss_pred ccccCCCCCCchhhhhhcchhhecccchhhccChhHHHHHHHhhc-CCchhHHHHHHhhheeeEeeccCchHHHHHHHHH
Q psy8357 132 KYTTSSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQWLYVLVA-SKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHA 210 (276)
Q Consensus 132 ~~~~~~tn~q~YiLrAl~q~mlYvdGM~gvi~h~~tvqwLYsL~~-S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~ 210 (276)
+..++.|.+--+|+++.++.--..-.+-+-+|... ++.... ++.+.|.+.||++|+-.| +++|...+++-...
T Consensus 338 -L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~---i~~~L~~d~d~~Ir~~aL~lL~~l~--~~~Nv~~Iv~eL~~ 411 (621)
T 2vgl_A 338 -LQHRETNLRYLALESMCTLASSEFSHEAVKTHIET---VINALKTERDVSVRQRAVDLLYAMC--DRSNAQQIVAEMLS 411 (621)
T ss_dssp -SSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHH---HHHHHTTCCCHHHHHHHHHHHHHHC--CHHHHHHHHHHHHH
T ss_pred -hcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHH---HHHHhccCCCHhHHHHHHHHHHHHc--ChhhHHHHHHHHHH
Confidence 34556677666777777665321101223334332 333333 556889999999999886 66788777766665
Q ss_pred hhh
Q psy8357 211 VDN 213 (276)
Q Consensus 211 v~~ 213 (276)
+..
T Consensus 412 yl~ 414 (621)
T 2vgl_A 412 YLE 414 (621)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 52
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=33.61 E-value=88 Score=29.76 Aligned_cols=162 Identities=14% Similarity=0.078 Sum_probs=91.4
Q ss_pred HHHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCC--CCCchhhhhh
Q psy8357 71 NIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSST--DLPTEPLVAL 148 (276)
Q Consensus 71 ~lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~t--n~q~YiLrAl 148 (276)
.++++|. .+++.+++-.|...+ ..|+... ++.-..+ ..+..|+..+++.+.... .+. +.+..+..++
T Consensus 290 ~LV~lLl--~s~~~~v~~~A~~aL-~nLs~~~-~~nk~~I--~~~~Gal~~Lv~LL~~~~-----~~~~~~v~~~A~~aL 358 (458)
T 3nmz_A 290 ALMECAL--EVKKESTLKSVLSAL-WNLSAHC-TENKADI--CAVDGALAFLVGTLTYRS-----QTNTLAIIESGGGIL 358 (458)
T ss_dssp HHHHHHT--TCCSHHHHHHHHHHH-HHHHHHC-HHHHHHH--HHSTTHHHHHHHHTTCCC-----SSSTTHHHHHHHHHH
T ss_pred HHHHHHh--cCCCHHHHHHHHHHH-HHHccCC-HHHHHHH--HHhcCcHHHHHHHhcCCC-----CcchHHHHHHHHHHH
Confidence 4677653 356778877765433 2222211 1111122 235678888877752110 111 1344455666
Q ss_pred cchhhe----cccchhhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHH
Q psy8357 149 GQVMLY----VDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIM 224 (276)
Q Consensus 149 ~q~mlY----vdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm 224 (276)
+++-.| .++-..|++ ...|..|-.|..+.-..|.|.|...|--++-.++.+...+ ..+.+. ..|+
T Consensus 359 ~nLs~~~a~~~~~~~~i~~-~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i-------~~~G~I---~~Lv 427 (458)
T 3nmz_A 359 RNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL-------WDMGAV---SMLK 427 (458)
T ss_dssp HHHHHHHTTCHHHHHHHHH-TTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHH-------HHHTHH---HHHH
T ss_pred HHHHhcccCCHHHHHHHHH-cccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHH-------HHCCCH---HHHH
Confidence 666643 333333344 4568888888888777788988888877654333333222 222232 3578
Q ss_pred HhhccCCCCchHHHHHHHHHHHHHhcCCCCCchhh
Q psy8357 225 RLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYY 259 (276)
Q Consensus 225 ~lL~~~d~~D~E~~v~amTLiNktL~~~pdqds~y 259 (276)
++|. ++|.+++-+|...+...+.+-| .+|.
T Consensus 428 ~LL~---s~~~~v~~~Aa~AL~nL~~~~p--~ky~ 457 (458)
T 3nmz_A 428 NLIH---SKHKMIAMGSAAALRNLMANRP--AKYK 457 (458)
T ss_dssp TTTT---CSSHHHHHHHHHHHHHHHTCCS--CC--
T ss_pred HHHh---CCCHHHHHHHHHHHHHHHcCCH--hhhc
Confidence 8885 6789999998888877777644 4443
No 53
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=30.18 E-value=2.3e+02 Score=23.26 Aligned_cols=28 Identities=14% Similarity=-0.007 Sum_probs=16.4
Q ss_pred ChhHHHHHHHhhcCCchhHHHHHHhhhe
Q psy8357 164 HPPTVQWLYVLVASKFRLVIKTALKLLL 191 (276)
Q Consensus 164 h~~tvqwLYsL~~S~~rlVvKtaLkLLl 191 (276)
.++.+..|..+..++...|-+.|+..|-
T Consensus 190 ~~~~~~~L~~~l~d~~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 190 NSDIRDCFVEMLQDKNEEVRIEAIIGLS 217 (280)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4566666666666555555555555443
No 54
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=30.05 E-value=2.3e+02 Score=25.35 Aligned_cols=232 Identities=9% Similarity=0.038 Sum_probs=0.0
Q ss_pred chhhhHHHHhhcCcchhHHHHHhhHhheeeee------------------ccchhHHHHHHHHHhhccCCCCC----chH
Q psy8357 14 PPTVQWLYVLVASKFRLVIKTALKLLLIFVEY------------------VESNCFLLIQAVHAVDNSNGEPP----WSN 71 (276)
Q Consensus 14 ~~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey------------------~e~n~~lli~Av~~v~~~~g~~p----ws~ 71 (276)
++.+.+|-... ++..-|-+.+.+.|--|+++ ++.+...=..|+++...--..-| |..
T Consensus 48 ~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~ 126 (588)
T 1b3u_A 48 SELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH 126 (588)
T ss_dssp HTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHT
T ss_pred HHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_pred HHHhhccC-CCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcc
Q psy8357 72 IMRLLTDR-DSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQ 150 (276)
Q Consensus 72 lm~lL~~~-ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q 150 (276)
++.++.+- .+.+.+....|..++......+++. ....+-..+..+ ...+..+.+..+.+++++
T Consensus 127 l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~----------~~~~l~~~l~~l------~~d~~~~VR~~a~~~l~~ 190 (588)
T 1b3u_A 127 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----------VKAELRQYFRNL------CSDDTPMVRRAAASKLGE 190 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH----------HHHHHHHHHHHH------HTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHH------hCCCCHHHHHHHHHHHHH
Q ss_pred hhhecccchhhccChhHHHHHHHhhcCCchhHHHHHHhhheeeEee------------------ccCchHHHHHHHHHhh
Q psy8357 151 VMLYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEY------------------VESNCFLLIQAVHAVD 212 (276)
Q Consensus 151 ~mlYvdGM~gvi~h~~tvqwLYsL~~S~~rlVvKtaLkLLlVfvey------------------~e~n~~l~~~Av~~v~ 212 (276)
+.-+..+=.. .++++..|-.+..+....|-+.|++.|-.+++. .+.++..=..|+++..
T Consensus 191 l~~~~~~~~~---~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~ 267 (588)
T 1b3u_A 191 FAKVLELDNV---KSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFT 267 (588)
T ss_dssp HHHTSCHHHH---HHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHH
T ss_pred HHHHhcHHhH---HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q ss_pred hcCCCCC--------chHHHHhhccCCCCchHHHHHHHHHHHHHhcCCCCC----chhhHHHHHHHHh
Q psy8357 213 NSNGEPP--------WSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQ----DSYYDQVDALEEQ 268 (276)
Q Consensus 213 ~~~~~~p--------wsnlm~lL~~~d~~D~E~~v~amTLiNktL~~~pdq----ds~yd~~d~le~~ 268 (276)
.--...+ ...+++++. ..|.++...|..-+......+|.. ....+++..+...
T Consensus 268 ~l~~~~~~~~~~~~l~~~l~~~l~---d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~ 332 (588)
T 1b3u_A 268 ELQKAVGPEITKTDLVPAFQNLMK---DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL 332 (588)
T ss_dssp HHHHHHCHHHHHHTHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH
T ss_pred HHHHHhCcccchhHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH
No 55
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=28.60 E-value=2.5e+02 Score=27.46 Aligned_cols=193 Identities=13% Similarity=0.087 Sum_probs=101.6
Q ss_pred chhhhHHHHhh---cCcchhHHHHHhhHhheeeeeccchhHHHHHHHHHhhccCCCCC-chHHHHhhccCCCCchHHHHH
Q psy8357 14 PPTVQWLYVLV---ASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPP-WSNIMRLLTDRDSTDTELLIY 89 (276)
Q Consensus 14 ~~tiqwLy~L~---~S~~rlVvKtaLkLLlVfvey~e~n~~lli~Av~~v~~~~g~~p-ws~lm~lL~~~ds~D~Ellvy 89 (276)
++.+++|.++. -|+..-+-|.|-+-|--| +..|- |..+..++..-.+.|.++.-+
T Consensus 9 ~~~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~---------------------~~~p~~~~~l~~il~~~~~~~~~vR~~ 67 (852)
T 4fdd_A 9 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQL---------------------NQYPDFNNYLIFVLTKLKSEDEPTRSL 67 (852)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH---------------------TTSHHHHHHHHHHHHTCTTSCHHHHHH
T ss_pred hhhHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---------------------HhCCCHHHHHHHHHhccCCCChHHHHH
Confidence 36777777665 355555656665544322 22221 445566665334678899999
Q ss_pred HHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccchhhccChhHHH
Q psy8357 90 AMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQ 169 (276)
Q Consensus 90 amTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~gvi~h~~tvq 169 (276)
|-.++-+.+.. .+.-++ +..-+.+.+.+.+. +..+....+..+-.+++.+.-+ | +--.-|+++.
T Consensus 68 a~~~Lkn~i~~------~w~~~~---~~~~~~ik~~ll~~---l~~~~~~vr~~~a~~i~~ia~~-~---~~~~wp~ll~ 131 (852)
T 4fdd_A 68 SGLILKNNVKA------HFQNFP---NGVTDFIKSECLNN---IGDSSPLIRATVGILITTIASK-G---ELQNWPDLLP 131 (852)
T ss_dssp HHHHHHHHTTT------SGGGCC---HHHHHHHHHHHHTT---TTCSSHHHHHHHHHHHHHHHHH-T---TTTTCTTHHH
T ss_pred HHHHHHHHHHH------ccCCCC---HHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHh-c---CccccHHHHH
Confidence 88877766643 111111 11111222222110 1111111222222223322222 2 3346789999
Q ss_pred HHHHhhcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCchHHHHhhcc-CCCCchHHHHHHHHHHHHH
Q psy8357 170 WLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTD-RDSTDTELLIYAMSLLNKT 248 (276)
Q Consensus 170 wLYsL~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pwsnlm~lL~~-~d~~D~E~~v~amTLiNkt 248 (276)
.|.++..|....+..+|+..|--+|+-... . .+...-..++..++..|.+ -.+.+.++...|+.-++.-
T Consensus 132 ~L~~~l~~~~~~~r~~al~~L~~i~~~~~~---~-------~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~ 201 (852)
T 4fdd_A 132 KLCSLLDSEDYNTCEGAFGALQKICEDSAE---I-------LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQF 201 (852)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHHHHHTT---H-------HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhHH---H-------hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 999999998888888898888766543321 1 1111223445555443322 1356889999999888766
Q ss_pred hcCCC
Q psy8357 249 LNGIP 253 (276)
Q Consensus 249 L~~~p 253 (276)
+...|
T Consensus 202 ~~~~~ 206 (852)
T 4fdd_A 202 IISRT 206 (852)
T ss_dssp TTTTC
T ss_pred Hhccc
Confidence 65544
No 56
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=27.54 E-value=20 Score=35.70 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=70.5
Q ss_pred HHHhhccCCCCchHHHHHHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCcccc-CCCCCCchhhhhhcc
Q psy8357 72 IMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTT-SSTDLPTEPLVALGQ 150 (276)
Q Consensus 72 lm~lL~~~ds~D~EllvyamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~-~~tn~q~YiLrAl~q 150 (276)
|+++|. +++.+++..|..++--. +.-|+ -.+ .++..|+..+++.+.+..-+..+ .+.+...=+++++++
T Consensus 360 Lv~LL~---s~~~~v~~~A~~aL~nL-s~~~~---~~~---~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~N 429 (584)
T 3l6x_A 360 IADLLT---NEHERVVKAASGALRNL-AVDAR---NKE---LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINE 429 (584)
T ss_dssp HHHGGG---CSCHHHHHHHHHHHHHH-HTTCS---CHH---HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHH
T ss_pred HHHHHc---CCCHHHHHHHHHHHHHH-hCChh---HHH---HHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHH
Confidence 677784 67788888877754332 22221 223 34678999999986221000000 001122235666776
Q ss_pred hhhecccchhhccChhHHHHHHHhhcCC--chhHHHHHHhhheeeEeecc
Q psy8357 151 VMLYVDGMTGIMDHPPTVQWLYVLVASK--FRLVIKTALKLLLIFVEYVE 198 (276)
Q Consensus 151 ~mlYvdGM~gvi~h~~tvqwLYsL~~S~--~rlVvKtaLkLLlVfvey~e 198 (276)
++--.+-....|.....|.-|-.|..++ ...++|.|--+|--.+.|.|
T Consensus 430 L~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 430 VIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred HhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 6654444444455556788888888775 67899999999888776665
No 57
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=27.40 E-value=65 Score=26.88 Aligned_cols=60 Identities=15% Similarity=0.076 Sum_probs=42.7
Q ss_pred ccCCCCCCchhhhhhcchhhe-cccchhhccChhHHHHHHHhhcCC------chhHHHHHHhhheee
Q psy8357 134 TTSSTDLPTEPLVALGQVMLY-VDGMTGIMDHPPTVQWLYVLVASK------FRLVIKTALKLLLIF 193 (276)
Q Consensus 134 ~~~~tn~q~YiLrAl~q~mlY-vdGM~gvi~h~~tvqwLYsL~~S~------~rlVvKtaLkLLlVf 193 (276)
.....+.|.|+|.-|..|+-= -.-++.-+...+.++.|..++..+ -..|-+.+|+|+--.
T Consensus 60 ~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 60 QSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 344556788888877777754 345666788888899999888643 357777788877654
No 58
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=27.18 E-value=1.8e+02 Score=28.20 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=41.9
Q ss_pred hHHHHHhhHhheeeeeccch-hHHHHHHHHHhhccCCC----CCc-hHHHHhhccCCCCchHHHHHHHHHHHHhhCCCCC
Q psy8357 30 LVIKTALKLLLIFVEYVESN-CFLLIQAVHAVDNSNGE----PPW-SNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPD 103 (276)
Q Consensus 30 lVvKtaLkLLlVfvey~e~n-~~lli~Av~~v~~~~g~----~pw-s~lm~lL~~~ds~D~EllvyamTLiNktL~~lpD 103 (276)
-..+.|.+.|.-|+..++.| -.+.++++..+....+. .++ ..+++.|. ...|..+...|++++-+.. +
T Consensus 325 ~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~--~d~d~~Ir~~aL~lL~~l~----~ 398 (621)
T 2vgl_A 325 NLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALK--TERDVSVRQRAVDLLYAMC----D 398 (621)
T ss_dssp HHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHT--TCCCHHHHHHHHHHHHHHC----C
T ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhc--cCCCHhHHHHHHHHHHHHc----C
Confidence 34455566666666666666 44556666666554321 111 22334442 1366777777777765554 3
Q ss_pred CchhhHHHHHH
Q psy8357 104 QDSYYDQVDAL 114 (276)
Q Consensus 104 qDs~yD~~d~L 114 (276)
+++...++..|
T Consensus 399 ~~Nv~~Iv~eL 409 (621)
T 2vgl_A 399 RSNAQQIVAEM 409 (621)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHHHHHHHH
Confidence 34555554443
No 59
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=25.44 E-value=4.4e+02 Score=25.05 Aligned_cols=161 Identities=12% Similarity=0.141 Sum_probs=83.8
Q ss_pred cCchhhhHHHHhhcCc--chhHHHHHhhHhheeeeeccchhHHHHHHHHHhhccCCCCCchHHHHhhccCCCCchHHHHH
Q psy8357 12 DHPPTVQWLYVLVASK--FRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIY 89 (276)
Q Consensus 12 ~h~~tiqwLy~L~~S~--~rlVvKtaLkLLlVfvey~e~n~~lli~Av~~v~~~~g~~pws~lm~lL~~~ds~D~Ellvy 89 (276)
..++.+..|.+...|+ .-.+.++||+.|-.++++...+ . +. .....-+..+.+.|.+. .++.++...
T Consensus 125 ~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~--~----~~----~~~~~ll~~l~~~l~~~-~~~~~vr~~ 193 (876)
T 1qgr_A 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE--Q----LQ----DKSNEILTAIIQGMRKE-EPSNNVKLA 193 (876)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH--H----HG----GGHHHHHHHHHHHHSTT-CSCHHHHHH
T ss_pred ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHh--h----HH----hHHHHHHHHHHHhhcCC-CCCHHHHHH
Confidence 4688999999999988 7888899999998888754211 0 00 00001122344555421 135677888
Q ss_pred HHHHHHHhhCCCCCCchhhHHHHHHHHhh-HHHHHHhhhhcCCccccCCCCCCchhhhhhcchhh-ecccchhhccChhH
Q psy8357 90 AMSLLNKTLNGIPDQDSYYDQVDALEEQG-IAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVML-YVDGMTGIMDHPPT 167 (276)
Q Consensus 90 amTLiNktL~~lpDqDs~yD~~d~Le~~G-me~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~ml-YvdGM~gvi~h~~t 167 (276)
|+..++..+..+++. +.+. .+... ++.+.+.. .....+.+..++.++..+.- |.+-+..-+. +.+
T Consensus 194 a~~~l~~~~~~~~~~--~~~~---~~~~~il~~l~~~~-------~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~l 260 (876)
T 1qgr_A 194 ATNALLNSLEFTKAN--FDKE---SERHFIMQVVCEAT-------QCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PAL 260 (876)
T ss_dssp HHHHHHHHGGGCHHH--HTSH---HHHHHHHHHHHHHT-------TCSSHHHHHHHHHHHHHHHHHSGGGCHHHHT-TTH
T ss_pred HHHHHHHHHHHHHHH--HHhH---HHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHH
Confidence 888777766554421 0000 00001 11111111 11111222234444444442 2222221111 245
Q ss_pred HHHHHHhhcCCchhHHHHHHhhheeeEee
Q psy8357 168 VQWLYVLVASKFRLVIKTALKLLLIFVEY 196 (276)
Q Consensus 168 vqwLYsL~~S~~rlVvKtaLkLLlVfvey 196 (276)
++-+.....+....|.+.|++.+-.++++
T Consensus 261 ~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 289 (876)
T 1qgr_A 261 FAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (876)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 66666666677778888999888777665
No 60
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=25.04 E-value=79 Score=26.13 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=12.8
Q ss_pred hhhhHHHHhhcCcchhHHHHHhhHh
Q psy8357 15 PTVQWLYVLVASKFRLVIKTALKLL 39 (276)
Q Consensus 15 ~tiqwLy~L~~S~~rlVvKtaLkLL 39 (276)
.++..|..+..++...|-..|.+.|
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L 47 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVL 47 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555555555555544444443
No 61
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=22.43 E-value=2.4e+02 Score=26.91 Aligned_cols=117 Identities=10% Similarity=0.075 Sum_probs=65.3
Q ss_pred chHHHHhhccCCCCchHHHHHHHHHHHHhhCCCCC------CchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCc
Q psy8357 69 WSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPD------QDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPT 142 (276)
Q Consensus 69 ws~lm~lL~~~ds~D~EllvyamTLiNktL~~lpD------qDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~ 142 (276)
|..+..+|.+ .+.+.++.-+|-.++-+.+....+ +..+..+.+.....=.+.+++.+ ..+.... .
T Consensus 37 ~~~L~~~l~~-~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l-------~~~~~~~-~ 107 (876)
T 1qgr_A 37 LVELSRVLAN-PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTL-------GTETYRP-S 107 (876)
T ss_dssp HHHHHHHHHC-TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHT-------TTCCSSS-C
T ss_pred HHHHHHHHhC-CCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHh-------CCCcHHH-H
Confidence 5567777753 235788999998888777754321 01111111111111111233332 2222222 3
Q ss_pred hhhhhhcchhhecccchhhccChhHHHHHHHhhcCC--chhHHHHHHhhheeeEeec
Q psy8357 143 EPLVALGQVMLYVDGMTGIMDHPPTVQWLYVLVASK--FRLVIKTALKLLLIFVEYV 197 (276)
Q Consensus 143 YiLrAl~q~mlYvdGM~gvi~h~~tvqwLYsL~~S~--~rlVvKtaLkLLlVfvey~ 197 (276)
-+..+++.+..+ ++.. -..|+.+..|.+...|+ ...+.++|++.+-.+++..
T Consensus 108 ~~~~~l~~i~~~-~~~~--~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~ 161 (876)
T 1qgr_A 108 SASQCVAGIACA-EIPV--NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI 161 (876)
T ss_dssp HHHHHHHHHHHH-HGGG--TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHh-hCcc--cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Confidence 333344444333 3321 35789999999999887 7888899999998888753
No 62
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=21.24 E-value=1.4e+02 Score=24.46 Aligned_cols=88 Identities=16% Similarity=0.213 Sum_probs=57.7
Q ss_pred hhcCCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCch-HHHHhhccC---CCCchHHHHHHHHHHHHHh
Q psy8357 174 LVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWS-NIMRLLTDR---DSTDTELLIYAMSLLNKTL 249 (276)
Q Consensus 174 L~~S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pws-nlm~lL~~~---d~~D~E~~v~amTLiNktL 249 (276)
-+.++...|.-.||.||=.++.=.+. -|+.-|- .+.|- .+++++..+ +.++.++.--.+.||-.-=
T Consensus 56 rl~~~n~~v~l~AL~LLe~cvkNCG~---~fh~eia-------s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 56 KIQSPQEWEAIQALTVLETCMKSCGK---RFHDEVG-------KFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHCCH---HHHHHHT-------SHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhcCH---HHHHHHh-------hHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 33466677777777777666543332 2332221 12232 356777654 3468899988888888766
Q ss_pred cCCCCCchhhHHHHHHHHhhHH
Q psy8357 250 NGIPDQDSYYDQVDALEEQGIA 271 (276)
Q Consensus 250 ~~~pdqds~yd~~d~le~~Gme 271 (276)
.+.|+.-.|++.-+.|..+|+.
T Consensus 126 ~~f~~~p~i~~~Y~~Lk~~Giv 147 (149)
T 3g2s_A 126 VGLPEEVKIAEAYQMLKKQGIV 147 (149)
T ss_dssp HHCTTCHHHHHHHHHHHHTTCC
T ss_pred HHhCCCchHHHHHHHHHHCcCc
Confidence 6778777899999999999974
No 63
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=20.91 E-value=3.5e+02 Score=27.74 Aligned_cols=189 Identities=12% Similarity=0.037 Sum_probs=100.8
Q ss_pred chhhhHHHHhhcCcchhHHHHHhhHhheeeeeccc-----hhHHHHHHHHHhhccCCCCCchHHHHhhccCCCCchHHHH
Q psy8357 14 PPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVES-----NCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLI 88 (276)
Q Consensus 14 ~~tiqwLy~L~~S~~rlVvKtaLkLLlVfvey~e~-----n~~lli~Av~~v~~~~g~~pws~lm~lL~~~ds~D~Ellv 88 (276)
+..+..|..=..|+..-+-+.|++-|.-....... ...-++ ..+.+.|. +.+.+..-
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il---------------~~Ll~~L~---d~~~~vR~ 66 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVV---------------KMILKLLE---DKNGEVQN 66 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHH---------------HHHHHHTT---CSSHHHHH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHH---------------HHHHHHhc---CCCHHHHH
Confidence 44455555556777777777776655443222100 000011 12333443 46778887
Q ss_pred HHHHHHHHhhCCCCCCchhhHHHHHHHHhhHHHHHHhhhhcCCccccCCCCCCchhhhhhcchhhecccch-----hhcc
Q psy8357 89 YAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMT-----GIMD 163 (276)
Q Consensus 89 yamTLiNktL~~lpDqDs~yD~~d~Le~~Gme~i~~~~~~~~~~~~~~~tn~q~YiLrAl~q~mlYvdGM~-----gvi~ 163 (276)
-|...+-....++|+ . .+ +.=++.+++.+ ..++...+.-+..|++++.-....-. .---
T Consensus 67 ~A~~~L~~l~~~~~~-~-------~~-~~i~~~Ll~~l-------~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~ 130 (1230)
T 1u6g_C 67 LAVKCLGPLVSKVKE-Y-------QV-ETIVDTLCTNM-------LSDKEQLRDISSIGLKTVIGELPPASSGSALAANV 130 (1230)
T ss_dssp HHHHHHHHHHTTSCH-H-------HH-HHHHHHHHHHT-------TCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH
T ss_pred HHHHHHHHHHHhCCH-H-------HH-HHHHHHHHHHh-------cCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH
Confidence 788777777777764 1 11 11122233332 12222223345566777665443220 1123
Q ss_pred ChhHHHHHHHhhc-CCchhHHHHHHhhheeeEeeccCchHHHHHHHHHhhhcCCCCCc-----hHHHHhhccCCCCchHH
Q psy8357 164 HPPTVQWLYVLVA-SKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPW-----SNIMRLLTDRDSTDTEL 237 (276)
Q Consensus 164 h~~tvqwLYsL~~-S~~rlVvKtaLkLLlVfvey~e~n~~l~~~Av~~v~~~~~~~pw-----snlm~lL~~~d~~D~E~ 237 (276)
+++.+..|+.... ++...+...|++.+--+++..+. ...|+ ..++..|. ..+..+
T Consensus 131 ~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~----------------~l~~~~~~ll~~l~~~L~---~~~~~v 191 (1230)
T 1u6g_C 131 CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG----------------LLVNFHPSILTCLLPQLT---SPRLAV 191 (1230)
T ss_dssp HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS----------------SCTTTHHHHHHHHGGGGG---CSSHHH
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh----------------HHHHHHHHHHHHHHHHHc---CCcHHH
Confidence 6788999998887 57677888888887766643321 22233 33444554 356788
Q ss_pred HHHHHHHHHHHhcCCCCC
Q psy8357 238 LIYAMSLLNKTLNGIPDQ 255 (276)
Q Consensus 238 ~v~amTLiNktL~~~pdq 255 (276)
.-.|.+.++......|+.
T Consensus 192 R~~a~~al~~l~~~~~~~ 209 (1230)
T 1u6g_C 192 RKRTIIALGHLVMSCGNI 209 (1230)
T ss_dssp HHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHhcCHH
Confidence 888888888888777653
Done!