RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8357
(276 letters)
>gnl|CDD|216563 pfam01547, SBP_bac_1, Bacterial extracellular solute-binding
protein. This family also includes the bacterial
extracellular solute-binding protein family POTD/POTF.
Length = 260
Score = 29.3 bits (65), Expect = 2.0
Identities = 31/152 (20%), Positives = 50/152 (32%), Gaps = 23/152 (15%)
Query: 58 HAVDNSNGEPPWSNIMRLLTD---RDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDAL 114
A+ S G P + L + + +YA+ LL K L + + AL
Sbjct: 119 LALLASLGGPLFDKDGGALDNPEAVTAITYVEDLYAIVLLLKKLKNPGVAGADGREALAL 178
Query: 115 EEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTGIMDHP------PTV 168
EQG AA+ I +++ VA G G P
Sbjct: 179 FEQGKAAM-------AIVGGGAASANKPGLKVAFAAPAPDPKGDIGYAPLPAGKATFVGG 231
Query: 169 QWLYVLVASKFRLVIKTALKLLLIFVEYVESN 200
L + SK + + A K F++++ S
Sbjct: 232 YGLAIPKGSKNK---EAAKK----FLDFLLSP 256
>gnl|CDD|107253 cd01540, PBP1_arabinose_binding, Periplasmic L-arabinose-binding
protein (ABP), a member of a family of pentose/hexose
sugar-binding proteins of the type I periplasmic binding
protein superfamily. Periplasmic L-arabinose-binding
protein (ABP), a member of a family of pentose/hexose
sugar-binding proteins of the type I periplasmic binding
protein superfamily. ABP is only involved in transport
contrary to other related sugar-binding proteins such as
the glucose/galactose-binding protein (GGBP) and the
ribose-binding protein (RBP), both of which are involved
in chemotaxis as well as transport. The periplasmic ABP
consists of two alpha/beta globular domains connected by
a three-stranded hinge, a Venus flytrap-like domain,
which undergoes a transition from an open to a closed
conformational state upon ligand binding. Moreover, ABP
is homologous to the ligand-binding domain of eukaryotic
receptors such as metabotropic glutamate receptor
(mGluR) and DNA-binding transcriptional repressors such
as LacI and GalR.
Length = 289
Score = 28.2 bits (63), Expect = 4.1
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 68 PWSNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLD 127
P +NI + + +TDTE A TL P+ ++ + L ++ + +R+ +
Sbjct: 162 PEANIFQ--APQKTTDTEGAFDAA---ASTLTKNPNVKNWI--IYGLNDETVLGAVRATE 214
Query: 128 QHGIK 132
Q GI
Sbjct: 215 QSGIA 219
>gnl|CDD|227200 COG4863, COG4863, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 439
Score = 27.9 bits (62), Expect = 6.8
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 38 LLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLNKT 97
+ LIF + + + F N +S+ R++ D + IY +S +
Sbjct: 118 IDLIFPDTIPISIF-----QTLFKVENESLEYSSFNRIVIDFNEDKGNKKIYLVSYDKQL 172
Query: 98 LNGIPDQDSYYDQVDALEE 116
+ + + YD ++A +
Sbjct: 173 ILEVTVESKNYDNIEADLK 191
Score = 27.9 bits (62), Expect = 6.8
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 189 LLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYAMSLLNKT 248
+ LIF + + + F N +S+ R++ D + IY +S +
Sbjct: 118 IDLIFPDTIPISIF-----QTLFKVENESLEYSSFNRIVIDFNEDKGNKKIYLVSYDKQL 172
Query: 249 LNGIPDQDSYYDQVDALEE 267
+ + + YD ++A +
Sbjct: 173 ILEVTVESKNYDNIEADLK 191
>gnl|CDD|193564 cd08017, M20_IAA_Hyd, M20 Peptidase Indole-3-acetic acid amino acid
hydrolase. Peptidase M20 family, Plant Aminoacyclase-1
indole-3-acetic-L-aspartic acid hydrolase (IAA-Asp
hydrolase; IAAspH; IAAH; IAA amidohydrolase; EC 3.5.1.-)
subfamily. IAAspH hydrolyzes indole-3-acetyl-N-aspartic
acid (IAA or auxin) to indole-3-acetic acid. Genes
encoding IAA-amidohydrolases were first cloned from
Arabidopsis; ILR1, IAR3, ILL1 and ILL2 encode active
IAA- amino acid hydrolases, and three additional
amidohydrolase-like genes (ILL3, ILL5, ILL6) have been
isolated. In higher plants, the growth regulator
indole-3-acetic acid (IAA or auxin) is found both free
and conjugated via amide bonding to a variety of amino
acids and peptides, and via an ester linkage to
carbohydrates. IAA-Asp conjugates are involved in
homeostatic control, protection, storing and subsequent
use of free IAA. IAA-Asp is also found in some plants as
a unique intermediate for entering into IAA
non-decarboxylative oxidative pathway. IAA
amidohydrolase cleaves the amide bond between the auxin
and the conjugated amino acid. Enterobacter agglomerans
IAAspH has very strong enzyme activity and substrate
specificity towards IAA-Asp, although its substrate
affinity is weaker compared to Arabidopsis enzymes of
the ILR1 gene family. Enhanced IAA-hydrolase activity
has been observed during clubroot disease in Chinese
cabbage.
Length = 377
Score = 27.7 bits (62), Expect = 6.9
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 113 ALEEQGIAAVIRS-LDQHGIKYT 134
A EE +A+IR LD GI Y
Sbjct: 15 AFEEHETSALIRRELDALGIPYR 37
>gnl|CDD|181923 PRK09513, fruK, 1-phosphofructokinase; Provisional.
Length = 312
Score = 27.7 bits (62), Expect = 7.0
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 85 ELLIYAMSLLNKTLNGIPDQDSYYDQVDALEEQGIAAVIRSLDQHGIKYTTSSTDLPTEP 144
EL I+A L P+ + AL EQGIA V+ SL G + +S + +P
Sbjct: 190 ELEIWAGRKL-------PELKDVIEAAHALREQGIAHVVISLGAEGALWVNASGEWIAKP 242
>gnl|CDD|220454 pfam09878, DUF2105, Predicted membrane protein (DUF2105). This
domain, found in various hypothetical archaeal proteins,
has no known function.
Length = 210
Score = 27.3 bits (61), Expect = 7.1
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 2 LYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLI 41
L++ G P WL L+ + ++IK KL LI
Sbjct: 168 LWILGFIIFFLFPQ--AWLLALMLAGCGILIKVGSKLGLI 205
Score = 27.3 bits (61), Expect = 7.1
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 153 LYVDGMTGIMDHPPTVQWLYVLVASKFRLVIKTALKLLLI 192
L++ G P WL L+ + ++IK KL LI
Sbjct: 168 LWILGFIIFFLFPQ--AWLLALMLAGCGILIKVGSKLGLI 205
>gnl|CDD|217174 pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family.
This family consists of taurine catabolism dioxygenases
of the TauD, TfdA family. TauD from E. coli is a
alpha-ketoglutarate-dependent taurine dioxygenase. This
enzyme catalyzes the oxygenolytic release of sulfite
from taurine. TfdA from Burkholderia sp. is a
2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate
dioxygenase. TfdA from Alcaligenes eutrophus JMP134 is a
2,4-dichlorophenoxyacetate monooxygenase. Also included
are gamma-Butyrobetaine hydroxylase enzymes
EC:1.14.11.1.
Length = 215
Score = 26.9 bits (60), Expect = 9.7
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 114 LEEQGIAAVIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQWLYV 173
L+ +A + +L +HG+ L E +AL + + D ++ PP +Q L+
Sbjct: 18 LDFATLAELRDALAEHGVLLFRG-QPLSPEAFLALARRFWHTDLSY--LEEPPGIQLLHC 74
Query: 174 LVASK 178
L
Sbjct: 75 LEVPA 79
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.400
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,097,472
Number of extensions: 1341885
Number of successful extensions: 1204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1204
Number of HSP's successfully gapped: 15
Length of query: 276
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 180
Effective length of database: 6,679,618
Effective search space: 1202331240
Effective search space used: 1202331240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)