RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8357
         (276 letters)



>d1zcza2 c.97.1.4 (A:158-452) AICAR transformylase domain of
           bifunctional purine biosynthesis enzyme ATIC {Thermotoga
           maritima [TaxId: 2336]}
          Length = 295

 Score = 27.0 bits (59), Expect = 2.8
 Identities = 24/156 (15%), Positives = 47/156 (30%), Gaps = 16/156 (10%)

Query: 122 VIRSLDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQWLYVLVASKFRL 181
           V  S  Q  I+  +       +P            G   + +         ++V      
Sbjct: 121 VAPSFTQEAIEVLSKKKVRLLKPGDYASWAGKMAFGSLVLSERKYPEGNFELVVGEPLSE 180

Query: 182 VIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPWSNIMRLLTDRDSTDTELLIYA 241
                L+     VE  +SN  L+ +    V   +G+P           R        + A
Sbjct: 181 KELEDLEFAYRVVEGAKSNAVLIAKDGVTVGIGSGQP----------SRKRAAWIATVMA 230

Query: 242 MSLLNKTLNGIPDQDSYY---DQVDALEEQGIAAVI 274
                  +      D+++   D ++ L + G+ AV+
Sbjct: 231 GEKAKGAVAAS---DAFFPFPDSLEILAQAGVKAVV 263



 Score = 26.6 bits (58), Expect = 3.8
 Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 20/131 (15%)

Query: 10  IMDHPPTVQWLYVLVASKFRLVIKTALKLLLIFVEYVESNCFLLIQAVHAVDNSNGEPPW 69
           + +         ++V           L+     VE  +SN  L+ +    V   +G+P  
Sbjct: 160 LSERKYPEGNFELVVGEPLSEKELEDLEFAYRVVEGAKSNAVLIAKDGVTVGIGSGQP-- 217

Query: 70  SNIMRLLTDRDSTDTELLIYAMSLLNKTLNGIPDQDSYY---DQVDALEEQGIAAVIR-- 124
                    R        + A       +      D+++   D ++ L + G+ AV+   
Sbjct: 218 --------SRKRAAWIATVMAGEKAKGAVAAS---DAFFPFPDSLEILAQAGVKAVVAPL 266

Query: 125 -SL-DQHGIKY 133
            S+ D+  I+ 
Sbjct: 267 GSIRDEEVIEK 277


>d1iwpb_ c.51.3.1 (B:) Diol dehydratase, beta subunit {Klebsiella
           pneumoniae [TaxId: 573]}
          Length = 184

 Score = 26.3 bits (58), Expect = 3.5
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 245 LNKTLNGIPDQDSYYDQVDALEEQGIAAVIRR 276
            + TL  +P      + +  +EE+G+ A + R
Sbjct: 32  QHHTLIDMPHGAILKELIAGVEEEGLHARVVR 63



 Score = 26.0 bits (57), Expect = 4.3
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 94  LNKTLNGIPDQDSYYDQVDALEEQGI-AAVIRSLD 127
            + TL  +P      + +  +EE+G+ A V+R L 
Sbjct: 32  QHHTLIDMPHGAILKELIAGVEEEGLHARVVRILR 66


>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus
           subtilis [TaxId: 1423]}
          Length = 330

 Score = 26.0 bits (56), Expect = 4.8
 Identities = 5/49 (10%), Positives = 10/49 (20%)

Query: 126 LDQHGIKYTTSSTDLPTEPLVALGQVMLYVDGMTGIMDHPPTVQWLYVL 174
           L      +   +    T+    +               H    +  Y L
Sbjct: 194 LLTGDQLHRIVAAQKNTDGQFIVVSSEGPKGDRIVDHYHEYHTETFYCL 242


>d1eexb_ c.51.3.1 (B:) Diol dehydratase, beta subunit {Klebsiella
           oxytoca [TaxId: 571]}
          Length = 178

 Score = 25.6 bits (56), Expect = 5.4
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 245 LNKTLNGIPDQDSYYDQVDALEEQGIAAVIRR 276
               + GIP +    + +  +EE+GI A + R
Sbjct: 30  QTVNIVGIPHKSILREVIAGIEEEGIKARVIR 61



 Score = 25.2 bits (55), Expect = 7.6
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 94  LNKTLNGIPDQDSYYDQVDALEEQGI-AAVIRSLD 127
               + GIP +    + +  +EE+GI A VIR   
Sbjct: 30  QTVNIVGIPHKSILREVIAGIEEEGIKARVIRCFK 64


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0688    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 983,564
Number of extensions: 42113
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 12
Length of query: 276
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 192
Effective length of database: 1,254,276
Effective search space: 240820992
Effective search space used: 240820992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.9 bits)