RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8358
(424 letters)
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide
3-kinase gamma, secondary messenger generation, PI3K, PI
3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP:
a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A*
1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A*
3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A*
3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Length = 961
Score = 293 bits (750), Expect = 1e-90
Identities = 83/385 (21%), Positives = 154/385 (40%), Gaps = 33/385 (8%)
Query: 1 MCLQHAPRLSPQLEFIRVLINMSKTL----ASLRSKEAKTSRLLADLTTLNHNLPARVWL 56
+ Q++ I +L ++ + A ++ L NL
Sbjct: 583 CGTAMLHDFTQQVQVIDMLQKVTIDIKSLSAEKYDVSSQVISQLKQKLENLQNLNLPQSF 642
Query: 57 PLYSDQPHHIVRIPPSAAAVLNSKDKAPYIIYCEEPWSKKEARIRQSSPYGHIPSWRLMA 116
+ D + V+ SK KK + S +
Sbjct: 643 RVPYDPGLKAGALVIEKCKVMASK--------------KKPLWLEFKCADPTALSNETIG 688
Query: 117 AIVKSGDDLRQELLASQLLTLLQKIWDIERVPLILHPYKILCLSNDSGLIEPILNTVSLH 176
I K GDDLRQ++L Q+L +++ IW+ E + L L PY + + G+IE + + ++
Sbjct: 689 IIFKHGDDLRQDMLILQILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTIA 748
Query: 177 QIKK---NSQVSLLEYFIQEFGD---INSEGFLAAQKNFVQSTAAYSLVCYLLQVKDRHN 230
+I++ + + + + + E F AA + FV S A Y + ++L + DRHN
Sbjct: 749 KIQQSTVGNTGAFKDEVLSHWLKEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHN 808
Query: 231 GNILLSGEGHLIHIDFGFILSLSPRNLG--FETSPFKLTLEVVEVFGGV-----DMFCYF 283
NI++S G+L HIDFG IL LG E PF LT + + V G F F
Sbjct: 809 DNIMISETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFVMGTSGKKTSLHFQKF 868
Query: 284 KILMLQGLIAARKHMDKILSLVEIMRSGSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVL 343
+ + ++ +A R H + ++ L +M + +P ++ +++ + +EE +
Sbjct: 869 QDVCVKAYLALRHHTNLLIILFSMM-LMTGMPQLT-SKEDIEYIRDALTVGKSEEDAKKY 926
Query: 344 IDKLVDSSIHSLSTKLYDGFQYYTN 368
++ T ++ F +
Sbjct: 927 FLDQIEVCRDKGWTVQFNWFLHLVL 951
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta
protein, PIK3C3, compound 15E, structural genomics, SGC
stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Length = 614
Score = 279 bits (714), Expect = 3e-88
Identities = 84/361 (23%), Positives = 151/361 (41%), Gaps = 28/361 (7%)
Query: 9 LSPQLEFIRVLINMSKTLASLRSKEAKTSRLLADLTTLNHNLPARVWLPLYSDQPHHIVR 68
L+ Q F+ L+++ K + K + L L N + +
Sbjct: 277 LAAQQTFVDRLVHLMKAVQRESGNRKKKNERLQALLGDNEKMNLSDVELIPL-------- 328
Query: 69 IPPSAAAVLNSKDKAPYIIYCEEPWSKKEARIRQSSPYGHIPSWRLMAAIVKSGDDLRQE 128
P + E + ++ + + + I K GDDLRQ+
Sbjct: 329 -PLEPQVKIRGIIP--------ETATLFKSALMPAQLFFKTEDGGKYPVIFKHGDDLRQD 379
Query: 129 LLASQLLTLLQKIWDIERVPLILHPYKILCLSNDSGLIEPILNTVSLHQIKKNSQVSLLE 188
L Q+++L+ K+ E + L L PYK+L S G ++ I + + S+
Sbjct: 380 QLILQIISLMDKLLRKENLDLKLTPYKVLATSTKHGFMQFIQSVPVAEVLDTEG--SIQN 437
Query: 189 YFIQEFGDINSEG--FLAAQKNFVQSTAAYSLVCYLLQVKDRHNGNILLSGEGHLIHIDF 246
+F + N +V+S A Y ++ Y+L V DRH N+LL+ G L HIDF
Sbjct: 438 FFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITYILGVGDRHLDNLLLTKTGKLFHIDF 497
Query: 247 GFILSLSPRNLGFETSPFKLTLEVVEVFGGV--DMFCYFKILMLQGLIAARKHMDKILSL 304
G+IL P P KL E+VE GG + + F+ + R++ + IL+L
Sbjct: 498 GYILGRDP---KPLPPPMKLNKEMVEGMGGTQSEQYQEFRKQCYTAFLHLRRYSNLILNL 554
Query: 305 VEIMRSGSQLPCFKS-GAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLYDGF 363
+M + +P TV+ ++++F ++L++E+ + L+D S+H+L + +
Sbjct: 555 FSLMVD-ANIPDIALEPDKTVKKVQDKFRLDLSDEEAVHYMQSLIDESVHALFAAVVEQI 613
Query: 364 Q 364
Sbjct: 614 H 614
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase;
2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A*
2x6j_A* 2x6k_A*
Length = 696
Score = 275 bits (705), Expect = 4e-86
Identities = 94/379 (24%), Positives = 159/379 (41%), Gaps = 33/379 (8%)
Query: 2 CLQHAPRLSPQLEFIRVLINMSKTLASL----RSKEAKTSRLLADLTTLNHNLPARVWLP 57
L Q FI L+ + K +A K K +LLA+ N +P
Sbjct: 341 LRGIFYNLRKQRRFIDELVKLVKLVAKEPGNRNKKTEKFQKLLAEQDMFKVNFTNFEPIP 400
Query: 58 LYSDQPHHIVRIPPSAAAVLNSKDKAPYIIYCEEPWSKKEARIRQSSPYGHIPSWRLMAA 117
D +I +I P ++ S A++ + AA
Sbjct: 401 FPLDPEIYITKIVPMRTSLFKSA--------------LMPAKLTFVTSIA----HHEYAA 442
Query: 118 IVKSGDDLRQELLASQLLTLLQKIWDIERVPLILHPYKILCLSNDSGLIEPILNTVSLHQ 177
I K GDDLRQ+ L Q++TL+ K+ E + L L PYK+L S+ G ++ + +
Sbjct: 443 IFKHGDDLRQDQLILQMITLMDKLLRRENLDLKLTPYKVLATSSKHGFLQYVDSCTVAEV 502
Query: 178 IKKNSQVSLLEYFIQEFGDINSEGFL--AAQKNFVQSTAAYSLVCYLLQVKDRHNGNILL 235
+ + + +F + N + +++S A Y ++ YLL V DRH N+LL
Sbjct: 503 LAREGNI--HNFFRKHHPCDNGPYGISAEVMDTYIKSCAGYCVITYLLGVGDRHLDNLLL 560
Query: 236 SGEGHLIHIDFGFILSLSPRNLGFETSPFKLTLEVVEVFGGVD--MFCYFKILMLQGLIA 293
+ G L HIDFG+IL P P KL+ E+VE GG+ F+ +
Sbjct: 561 TTNGKLFHIDFGYILGRDP---KPMPPPMKLSKEMVEAMGGISSEHHHEFRKQCYTAYLH 617
Query: 294 ARKHMDKILSLVEIMRSGSQLPCFKS-GAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI 352
R+H + +L+L +M + +P V+ ++ + LT+E+ + L+D SI
Sbjct: 618 LRRHANVMLNLFSLMVD-ATVPDIALEPDKAVKKVEENLQLGLTDEEAVQHLQSLLDVSI 676
Query: 353 HSLSTKLYDGFQYYTNAFQ 371
++ L + +T ++
Sbjct: 677 TAVMPALVEQIHRFTQYWR 695
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit
alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol
3,4,5- triphosphate, wortmannin, H1047R, ATP-binding,
disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens}
PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Length = 1091
Score = 275 bits (704), Expect = 3e-83
Identities = 83/386 (21%), Positives = 166/386 (43%), Gaps = 33/386 (8%)
Query: 1 MCLQHAPRLSPQLEFIRVLINMSKTLASLRSKEAKTSRLLADLTTL--NHNLPARVWLPL 58
C + L+ Q+E + LIN++ L + E + ++ + + + A
Sbjct: 717 ACGMYLKHLNRQVEAMEKLINLTDILKQEKKDETQKVQMKFLVEQMRRPDFMDALQGFLS 776
Query: 59 YSDQPHHIVRIPPSAAAVLNSKDKAPYIIYCEEPWSKKEARIRQSSPYGHIPSWRLMAAI 118
+ H + + +++S + ++ + + ++ I
Sbjct: 777 PLNPAHQLGNLRLEECRIMSSAKRPLWLNWE-------------NPDIMSELLFQNNEII 823
Query: 119 VKSGDDLRQELLASQLLTLLQKIWDIERVPLILHPYKILCLSNDSGLIEPILNTVSLHQI 178
K+GDDLRQ++L Q++ +++ IW + + L + PY L + + GLIE + N+ ++ QI
Sbjct: 824 FKNGDDLRQDMLTLQIIRIMENIWQNQGLDLRMLPYGCLSIGDCVGLIEVVRNSHTIMQI 883
Query: 179 KKNSQVSLLEYFIQEF------GDINSEGFLAAQKNFVQSTAAYSLVCYLLQVKDRHNGN 232
+ + F E + AA F +S A Y + ++L + DRHN N
Sbjct: 884 QCKGGLKGALQFNSHTLHQWLKDKNKGEIYDAAIDLFTRSCAGYCVATFILGIGDRHNSN 943
Query: 233 ILLSGEGHLIHIDFGFILSLSPRNLGF--ETSPFKLTLEVVEVFGGVDM-------FCYF 283
I++ +G L HIDFG L + G+ E PF LT + + V F F
Sbjct: 944 IMVKDDGQLFHIDFGHFLDHKKKKFGYKRERVPFVLTQDFLIVISKGAQECTKTREFERF 1003
Query: 284 KILMLQGLIAARKHMDKILSLVEIMRSGSQLPCFKSGAATVQNLKNRFHMNLTEEQ-LQV 342
+ + + +A R+H + ++L +M GS +P +S + ++ ++ TE++ L+
Sbjct: 1004 QEMCYKAYLAIRQHANLFINLFSMM-LGSGMPELQSF-DDIAYIRKTLALDKTEQEALEY 1061
Query: 343 LIDKLVDSSIHSLSTKLYDGFQYYTN 368
+ ++ D+ +TK+ F
Sbjct: 1062 FMKQMNDARHGGWTTKMDWIFHTIKQ 1087
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta
isoform; transferase, phosphoprotein, isoform-specific
inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A*
2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A*
2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Length = 940
Score = 265 bits (679), Expect = 1e-80
Identities = 87/387 (22%), Positives = 144/387 (37%), Gaps = 35/387 (9%)
Query: 2 CLQHAPRLSPQLEFIRVLINMSKTLASLRSKEAKTSR--LLADLTTLNHNLPARVWLPLY 59
H L Q E + L ++ + K K ++ + A L
Sbjct: 571 STHHMKVLMKQGEALSKLKALNDFVKVSSQKTTKPQTKEMMHMCMRQETYMEALSHLQSP 630
Query: 60 SDQPHHIVRIPPSAAAVLNSKDKAPYIIYCEEPWSKKEARIRQSSPYGHIPSWRLMAAIV 119
D + + ++SK K + S + I
Sbjct: 631 LDPSTLLEEVCVEQCTFMDSKMK----------------PLWIMYSSEEAGSAGNVGIIF 674
Query: 120 KSGDDLRQELLASQLLTLLQKIWDIERVPLILHPYKILCLSNDSGLIEPILNTVSLHQIK 179
K+GDDLRQ++L Q++ L+ +W E + L + PY L + +GLIE +L++ ++ I+
Sbjct: 675 KNGDDLRQDMLTLQMIQLMDVLWKQEGLDLRMTPYGCLPTGDRTGLIEVVLHSDTIANIQ 734
Query: 180 KNSQVSLLEYFIQEFGDINS-------EGFLAAQKNFVQSTAAYSLVCYLLQVKDRHNGN 232
N + +N E A + F S A Y + Y+L + DRH+ N
Sbjct: 735 LNKSNMAATAAFNKDALLNWLKSKNPGEALDRAIEEFTLSCAGYCVATYVLGIGDRHSDN 794
Query: 233 ILLSGEGHLIHIDFGFILSLSPRNLG--FETSPFKLTLEVVEVFGGV-----DMFCYFKI 285
I++ G L HIDFG L G E PF LT + V V + F F+
Sbjct: 795 IMIRESGQLFHIDFGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEKFERFRG 854
Query: 286 LMLQGLIAARKHMDKILSLVEIMRSGSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLID 345
+ R+H L L +MR+ + LP + +Q LK+ + TEE+
Sbjct: 855 YCERAYTILRRHGLLFLHLFALMRA-AGLPELS-CSKDIQYLKDSLALGKTEEEALKHFR 912
Query: 346 KLV-DSSIHSLSTKLYDGFQYYTNAFQ 371
++ S TK+ + +
Sbjct: 913 VKFNEALRESWKTKVNWLAHNVSKDNR 939
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta
isoform; transferase, phosphoinositide 3-kinase, RTK;
HET: GD9; 3.30A {Mus musculus}
Length = 1092
Score = 262 bits (670), Expect = 1e-78
Identities = 84/388 (21%), Positives = 151/388 (38%), Gaps = 36/388 (9%)
Query: 1 MCLQHAPRLSPQLEFIRVLINMSKTLASLRSKEAKTSR--LLADLTTLNHNLPARVWLPL 58
+ H LS Q+E + L ++ + K ++ + + A L
Sbjct: 723 GSVGHMKVLSKQVEALNKLKTLNSLIKLNAVKLSRAKGKEAMHTCLKQSAYREALSDLQS 782
Query: 59 YSDQPHHIVRIPPSAAAVLNSKDKAPYIIYCEEPWSKKEARIRQSSPYGHIPSWRLMAAI 118
+ + + ++SK K +++Y + I
Sbjct: 783 PLNPCVILSELYVEKCKYMDSKMKPLWLVYSS-----------------RAFGEDSVGVI 825
Query: 119 VKSGDDLRQELLASQLLTLLQKIWDIERVPLILHPYKILCLSNDSGLIEPILNTVSLHQI 178
K+GDDLRQ++L Q+L L+ +W + L + PY L + SGLIE + + ++ I
Sbjct: 826 FKNGDDLRQDMLTLQMLRLMDLLWKEAGLDLRMLPYGCLATGDRSGLIEVVSTSETIADI 885
Query: 179 KKNSQVSLLEYFIQEFGDIN-------SEGFLAAQKNFVQSTAAYSLVCYLLQVKDRHNG 231
+ NS + +N + A + F S A Y + Y+L + DRH+
Sbjct: 886 QLNSSNVAATAAFNKDALLNWLKEYNSGDDLDRAIEEFTLSCAGYCVASYVLGIGDRHSD 945
Query: 232 NILLSGEGHLIHIDFGFILSLSPRNLG--FETSPFKLTLEVVEVFGGV-----DMFCYFK 284
NI++ G L HIDFG IL G E PF LT + + V + F F+
Sbjct: 946 NIMVKKTGQLFHIDFGHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTEKFGRFR 1005
Query: 285 ILMLQGLIAARKHMDKILSLVEIMRSGSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLI 344
+ R+H + ++L +M + + LP +Q LK+ + +EE+
Sbjct: 1006 QCCEDAYLILRRHGNLFITLFALMLT-AGLPELT-SVKDIQYLKDSLALGKSEEEALKQF 1063
Query: 345 DKLVDSSI-HSLSTKLYDGFQYYTNAFQ 371
+ D ++ S +TK+ ++
Sbjct: 1064 KQKFDEALRESWTTKVNWMAHTVRKDYR 1091
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 6e-05
Identities = 69/477 (14%), Positives = 149/477 (31%), Gaps = 114/477 (23%)
Query: 5 HAPRLSPQLEFIRVLINMSKTLASLRSKEA----------KTSRLLADLTTLNH----NL 50
+ RL P L+ +R + L LR + KT +A L++ +
Sbjct: 130 NVSRLQPYLK-LR------QALLELRPAKNVLIDGVLGSGKTW--VALDVCLSYKVQCKM 180
Query: 51 PARV-WLPL-YSDQPHHIVRIPPSAAAVLNSKDKAPYIIYCEEPWSKKEARIRQSSPYGH 108
++ WL L + P ++ + ++ + ++R S
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN-------WTSRSDHSSNIKLRIHSIQAE 233
Query: 109 IPSWRLMAAIVKSGDDLRQELLASQLLTLLQKIWDIERVPLILHPY----KILCLSNDSG 164
+ RL L+ + + LL +L + + + + + KIL +
Sbjct: 234 LR--RL----------LKSKPYENCLL-VLLNVQNAK----AWNAFNLSCKILLTTRFKQ 276
Query: 165 LIEPILNTVSLHQIKKNSQVSL-----LEYFIQEFGDINSEGFLAAQKNFVQSTA--AYS 217
+ + + + H + ++L ++ + L + V +T S
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD--LPRE---VLTTNPRRLS 331
Query: 218 LVCYLLQVKDRHNGNILLSGEGHLIHIDFGFILSLSP-------RNLG-FETS---PFKL 266
++ ++ N L I + L P L F S P
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI- 390
Query: 267 TLEVV-------EVFGGVDMFC------------YFKILMLQGLIAARKHMDKILSLVEI 307
L ++ +V V+ I + + + ++ +L
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY--LELKVKLENEYALHRS 448
Query: 308 MRSGSQLP-CFKSGAATVQNLKNRF------HMNLTE--EQLQVLIDKLVDSSIHSLSTK 358
+ +P F S L F H+ E E++ + +D L K
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD--FRFLEQK 506
Query: 359 L-YDGFQYYTNAFQYIAATVQNLKN-RFHMNLTEEQLQVLIDKLVDTSIHSLSTKLY 413
+ +D NA I T+Q LK + ++ + + + L++ ++D + + L
Sbjct: 507 IRHDS--TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF-LPKIEENLI 560
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 8e-05
Identities = 62/396 (15%), Positives = 118/396 (29%), Gaps = 159/396 (40%)
Query: 26 LASLRSKEAKTSR---LLADLTTLNHNLPARVWLPLYSDQPHHIVRIPPSAAAVLNSKDK 82
++SL L LT + L + H + AA L ++
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCY-------LEGNDIH-------ALAAKLLQEND 113
Query: 83 AP-----YII--YCEEPWSKKEARIRQSSPYGHIPSWRLMAAIVKSGDDLRQELLASQLL 135
+I Y ARI P+ + L A V G+ +QL+
Sbjct: 114 TTLVKTKELIKNY-------ITARIMAKRPFDKKSNSALFRA-VGEGN--------AQLV 157
Query: 136 TL-------------LQKIWDIERVPLILHPYKILCLSNDSGLIEPILNTVS--LHQIKK 180
+ L+ ++ Y L+ ++ + L ++ +
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQT---------YH--------VLVGDLIKFSAETLSELIR 200
Query: 181 NSQVSLLEYFIQEFGDINS----------EGFLAAQKNFVQSTAAYS--LVCYLLQVKDR 228
+ + + F Q +I + +L + S L+ ++Q
Sbjct: 201 TT-LDAEKVFTQGL-NILEWLENPSNTPDKDYLL--------SIPISCPLIG-VIQ---- 245
Query: 229 HNGNILLSGEGHLIHIDFGFILSLSPRNLGFETSPFKLTLEVVEVFGGVDMFCYFKILML 288
L H ++++ + LGF +P E+ G
Sbjct: 246 ------------LAH----YVVTA--KLLGF--TPG----ELRSYLKGA-------TGHS 274
Query: 289 QGLIAA------------RKHMDKILS-LVEI-MRSGSQLPCFKSGAATVQ-NLKNRF-- 331
QGL+ A + K ++ L I +R P + ++ +L+N
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 332 --HM----NLTEEQLQVLIDKL-----VDSSIH-SL 355
M NLT+EQ+Q ++K + SL
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Score = 36.2 bits (83), Expect = 0.026
Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 32/104 (30%)
Query: 335 LTEEQLQVLIDKLVDSSIHSLSTKLYDGFQYY----TNAF-----------------QYI 373
L+ L+ ++ LV ++ ++++L + F T F Y+
Sbjct: 11 LSHGSLEHVL--LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 374 AATVQNLKNRFHMNLTEEQLQVLIDK-----LVDTSIHSLSTKL 412
++ V+ K ++ L + + + L IH+L+ KL
Sbjct: 69 SSLVEPSKV----GQFDQVLNLCLTEFENCYLEGNDIHALAAKL 108
Score = 27.7 bits (61), Expect = 8.7
Identities = 7/30 (23%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 388 LTEEQLQVLIDKLVDTSIHSLSTKLYDGFQ 417
L+ L+ ++ LV T+ ++++L + F
Sbjct: 11 LSHGSLEHVL--LVPTASFFIASQLQEQFN 38
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics,
structural genomics consortium, SGC; 1.80A {Toxoplasma
gondii} PDB: 2w1z_A
Length = 377
Score = 36.1 bits (83), Expect = 0.019
Identities = 21/167 (12%), Positives = 53/167 (31%), Gaps = 28/167 (16%)
Query: 123 DDLRQELLASQLLTLLQKIWDIERVPLILHPYKILCLSNDSGLIEP--------ILNTVS 174
+++E+L +LL ++ + + P+ ++ +I +L+
Sbjct: 118 KQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFF 177
Query: 175 LHQIKKNSQVSLLEYFIQEFGDINSEGFLAAQKNFVQSTAAYSLVCYLLQVKDRHN---- 230
L+ +++ + E + S A + +Q + L H+
Sbjct: 178 LYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRL---LASL------HHYGLV 228
Query: 231 ------GNILLSGEGHLIHIDFGFILSLSPRNLGFETSPFKLTLEVV 271
+I+L G + F ++ R + S E+
Sbjct: 229 HTYLRPVDIVLDQRGGVFLTGFEHLVRDGARVV-SSVSRGFEPPELE 274
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural
genomics, structural genomics consortium, SGC; 1.80A
{Toxoplasma gondii}
Length = 413
Score = 35.4 bits (81), Expect = 0.034
Identities = 19/160 (11%), Positives = 50/160 (31%), Gaps = 27/160 (16%)
Query: 123 DDLRQELLASQLLTLLQKIWDIERVPLILHPYKILCLSNDSGLIEP--------ILNTVS 174
+++E+L +LL ++ + + P+ ++ +I +L+
Sbjct: 123 KQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFF 182
Query: 175 LHQIKKNSQVSLLEYFIQEFGDINSEGFLAAQKNFVQSTAAYSLVCYLLQVKDRHN---- 230
L+ +++ + E + S A + +Q + L H+
Sbjct: 183 LYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRL---LASL------HHYGLV 233
Query: 231 ------GNILLSGEGHLIHIDFGFILSLSPRNLGFETSPF 264
+I+L G + F ++ + F
Sbjct: 234 HTYLRPVDIVLDQRGGVFLTGFEHLVRDGASAVSPIGRGF 273
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma
gondii} PDB: 3q5z_A*
Length = 371
Score = 30.0 bits (67), Expect = 1.4
Identities = 16/154 (10%), Positives = 45/154 (29%), Gaps = 16/154 (10%)
Query: 123 DDLRQELLASQLLTLLQKIWDIERVPLILHPYKILCLSNDSGLIEPILNTVSLHQIKKNS 182
+ L + A+ L L + + +L P + + + + +
Sbjct: 107 ERLHEATFAAARL-LGESPEEARDRRRLLLPSDAVAVQSQPPFAQLSP---GQDDYAVAN 162
Query: 183 QVSLLEYFIQEFGD-INSEGFLAAQKNFVQSTAAYSLVCYLLQ-VKDRHN---------- 230
+ L+ + ++ F+ + A + L L++ + +
Sbjct: 163 YLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGHFTP 222
Query: 231 GNILLSGEGHLIHIDFGFILSLSPRNLGFETSPF 264
N+ + +G L+ D + + R
Sbjct: 223 DNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVT 256
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU;
CAMP-dependent protein kinase,catalytic mechanism, ATP
hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A
{Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E*
1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A*
1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A*
3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Length = 350
Score = 29.6 bits (67), Expect = 2.0
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 232 NILLSGEGHLIHIDFGF 248
N+L+ +G++ DFGF
Sbjct: 171 NLLIDQQGYIQVTDFGF 187
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open
conformation, transferase; HET: TPO; 2.80A
{Saccharomyces cerevisiae} SCOP: d.144.1.7
Length = 318
Score = 29.4 bits (67), Expect = 2.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 232 NILLSGEGHLIHIDFGF 248
NILL GH+ DFGF
Sbjct: 136 NILLDKNGHIKITDFGF 152
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A
{Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Length = 348
Score = 29.3 bits (66), Expect = 2.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 231 GNILLSGEGHLIHIDFGFILSLSPRN 256
GNILLS G + DFG ++P N
Sbjct: 183 GNILLSEPGLVKLGDFGSASIMAPAN 208
>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB,
inhibitor, LY333531, diabetes, cancer, transferase,
serine/threonine-protein kinase; HET: SEP LY4; 1.7A
{Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A*
1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A*
3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A*
3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ...
Length = 310
Score = 29.1 bits (66), Expect = 2.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 232 NILLSGEGHLIHIDFGF 248
NILL+ + H+ DFG
Sbjct: 160 NILLNEDMHIQITDFGT 176
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 28.2 bits (63), Expect = 3.7
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 332 HMNLTEEQLQVLIDKLVDSSIHSLSTKLYDGFQYY-TNAFQYIAAT--VQNLKNRFHMNL 388
H E++ D ++S KL+ FQ Y + I+ +Q L+ + +
Sbjct: 89 HFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQV 148
Query: 389 TEEQLQVLIDK 399
TEEQL+ + D+
Sbjct: 149 TEEQLENIADR 159
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside
phosphotransferase, antibiotic resistance; HET: MES PG4;
1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A*
3q2m_A*
Length = 339
Score = 28.5 bits (63), Expect = 5.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 227 DRHNGNILLSGEGHLIHIDFG 247
D H GN+L+ E + ID+
Sbjct: 212 DIHAGNVLVGNEESIYIIDWD 232
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA;
2.80A {Staphylococcus aureus}
Length = 514
Score = 28.3 bits (64), Expect = 6.0
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 11/58 (18%)
Query: 288 LQGLIAARKHMDKILSLVEIMRSGSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLID 345
++GLI A +DK+ +E++RS K+ +NL + TEEQ + ++
Sbjct: 399 VEGLIKALSILDKV---IELIRSS------KNKRDAKENLIEVY--EFTEEQAEAIVM 445
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV,
GRAM-positive bacteria, quinolone target, DNA binding,
DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae}
PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A*
3rad_A* 3rae_A* 3raf_A*
Length = 496
Score = 28.2 bits (64), Expect = 6.2
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 11/58 (18%)
Query: 288 LQGLIAARKHMDKILSLVEIMRSGSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLID 345
++GLI +D++ + ++R+ ++ A +NLK + + TEEQ + ++
Sbjct: 375 VEGLIRVISILDEV---IALIRAS------ENKADAKENLKVSY--DFTEEQAEAIVT 421
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics,
structural genomics consortium, SGC, TR; HET: STU; 2.29A
{Homo sapiens}
Length = 384
Score = 28.1 bits (63), Expect = 6.4
Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Query: 232 NILLSGEGHLIHI-DFGF 248
NILL GH +HI DF
Sbjct: 145 NILLDEHGH-VHITDFNI 161
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding,
cytoplasm, UBL conjugation, endosome, membrane, protein
transport, SH3 domain; 2.60A {Homo sapiens}
Length = 140
Score = 27.2 bits (60), Expect = 7.0
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 313 QLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLYDGFQYYTNAFQ- 371
+ A V N FH+ + + +++ + KL +T+ F+
Sbjct: 59 AMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118
Query: 372 -----YIAATVQNLKNR 383
I+A ++NLK +
Sbjct: 119 DPQLSLISAMIKNLKEQ 135
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 27.4 bits (61), Expect = 7.0
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 344 IDKLVDSSIHSLSTKLYDGFQYY-TNAFQYIAAT--VQNLKNRFHMNLTEEQLQVLIDKL 400
D ++S S KL+ F+ Y + I+ +Q L+ +N+++EQL + D+
Sbjct: 100 KDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRT 159
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase,
phosphorylation, serine/threonine protein kinase; 1.8A
{Homo sapiens} SCOP: d.144.1.7
Length = 355
Score = 27.6 bits (62), Expect = 7.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 232 NILLSGEGHLIHIDFGF 248
NILL GH++ DFG
Sbjct: 189 NILLDSNGHVVLTDFGL 205
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase,
transferase-transferase inhibito; HET: TPO 07U; 2.05A
{Homo sapiens}
Length = 353
Score = 27.6 bits (62), Expect = 8.7
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 232 NILLSGEGHLIHIDFG 247
N+LL EGH DFG
Sbjct: 154 NVLLDHEGHCKLADFG 169
>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of
P90 ribosomal S6 kinase 2, ATP- binding,
nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus
musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A*
Length = 325
Score = 27.5 bits (62), Expect = 8.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 232 NILLSGEGHLIHIDFG 247
NILL EGH+ DFG
Sbjct: 156 NILLDEEGHIKLTDFG 171
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase,
inhibitor, transf transferase inhibitor complex; HET:
0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A*
2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A*
2h9v_A*
Length = 410
Score = 27.7 bits (62), Expect = 8.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 232 NILLSGEGHLIHIDFGF 248
N+LL GHL DFG
Sbjct: 198 NMLLDKSGHLKLADFGT 214
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity,
atypical PKC, trans transferase substrate complex; HET:
TPO ADE; 2.40A {Mus musculus}
Length = 396
Score = 27.7 bits (62), Expect = 9.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 232 NILLSGEGHLIHIDFG 247
N+LL EGH+ D+G
Sbjct: 183 NVLLDSEGHIKLTDYG 198
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase,
transferase, serine/threonine-protein kinase; HET: TPO
ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A*
2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A*
3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A
1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Length = 337
Score = 27.6 bits (62), Expect = 9.5
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 232 NILLSGEGHLIHIDFG 247
N++L +GH+ DFG
Sbjct: 135 NLMLDKDGHIKITDFG 150
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo
sapiens} PDB: 3a8w_A* 1zrz_A*
Length = 345
Score = 27.6 bits (62), Expect = 9.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 232 NILLSGEGHLIHIDFG 247
N+LL EGH+ D+G
Sbjct: 140 NVLLDSEGHIKLTDYG 155
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase,
transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB:
3iw4_A*
Length = 353
Score = 27.6 bits (62), Expect = 9.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 232 NILLSGEGHLIHIDFG 247
N++L EGH+ DFG
Sbjct: 151 NVMLDSEGHIKIADFG 166
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 27.5 bits (60), Expect = 9.9
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 64 HHIVRIPPSAAAVLNSKDKAPYIIYCEEPWSKKEARIRQSSPYGHIPSWRLMAAIVKSGD 123
H ++ + P+A LN P +++ + +R S + + +
Sbjct: 291 HALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLC---PESRKSARKLYERSH 347
Query: 124 DLRQE 128
LR+
Sbjct: 348 KLRKN 352
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.399
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,220,021
Number of extensions: 365455
Number of successful extensions: 849
Number of sequences better than 10.0: 1
Number of HSP's gapped: 817
Number of HSP's successfully gapped: 50
Length of query: 424
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 328
Effective length of database: 4,021,377
Effective search space: 1319011656
Effective search space used: 1319011656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)