Query psy8359
Match_columns 279
No_of_seqs 146 out of 650
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 16:40:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8359.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8359hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dpl_C Cullin-5; ubiquitin, NE 100.0 6.9E-64 2.4E-68 470.8 21.4 262 17-279 1-382 (382)
2 1ldj_A Cullin homolog 1, CUL-1 100.0 6.2E-61 2.1E-65 485.2 18.6 273 5-279 385-760 (760)
3 2hye_C Cullin-4A, CUL-4A; beta 100.0 6.3E-60 2.2E-64 477.7 24.0 261 19-279 402-759 (759)
4 2do7_A Cullin-4B, CUL-4B; heli 100.0 5.3E-32 1.8E-36 206.7 2.4 93 187-279 3-95 (101)
5 3o2p_E Cell division control p 100.0 2.3E-30 7.8E-35 193.0 6.7 80 199-279 7-88 (88)
6 3tdu_C Cullin-1, CUL-1; E2:E3, 100.0 1.5E-30 5.1E-35 189.6 3.8 74 206-279 2-77 (77)
7 1iuy_A Cullin-3 homologue; win 100.0 4.8E-31 1.6E-35 198.6 0.5 84 196-279 7-92 (92)
8 1wi9_A Protein C20ORF116 homol 91.8 0.17 6E-06 35.3 3.8 55 219-279 11-65 (72)
9 1xn7_A Hypothetical protein YH 89.6 0.45 1.5E-05 33.8 4.5 44 219-268 6-49 (78)
10 2k4b_A Transcriptional regulat 88.8 0.14 4.9E-06 38.1 1.4 61 216-279 36-96 (99)
11 1p6r_A Penicillinase repressor 88.2 0.64 2.2E-05 32.5 4.5 60 217-279 11-70 (82)
12 2k02_A Ferrous iron transport 86.9 0.55 1.9E-05 34.1 3.5 45 219-269 6-50 (87)
13 1sd4_A Penicillinase repressor 79.1 1.7 5.9E-05 32.5 3.7 59 217-278 12-70 (126)
14 2fu4_A Ferric uptake regulatio 78.7 4.2 0.00014 28.1 5.5 59 218-277 20-80 (83)
15 3r0a_A Putative transcriptiona 76.6 2.4 8E-05 32.2 3.8 58 215-278 26-89 (123)
16 2htj_A P fimbrial regulatory p 76.4 4.3 0.00015 28.1 4.9 44 219-268 4-47 (81)
17 2jt1_A PEFI protein; solution 75.7 2.3 8E-05 29.9 3.3 39 228-272 23-61 (77)
18 2g9w_A Conserved hypothetical 75.6 2.6 8.8E-05 32.5 3.9 59 217-278 11-70 (138)
19 1qgp_A Protein (double strande 75.3 2.7 9.1E-05 29.4 3.5 52 218-275 17-71 (77)
20 1okr_A MECI, methicillin resis 73.9 2.9 9.8E-05 31.1 3.7 56 220-278 15-70 (123)
21 3cuo_A Uncharacterized HTH-typ 73.6 4.5 0.00015 28.6 4.5 55 215-275 24-78 (99)
22 1qbj_A Protein (double-strande 73.2 4.8 0.00016 28.5 4.4 52 217-274 12-66 (81)
23 1tbx_A ORF F-93, hypothetical 68.1 4.7 0.00016 28.8 3.6 55 219-275 12-66 (99)
24 2v79_A DNA replication protein 67.5 3.8 0.00013 31.9 3.1 23 245-267 61-83 (135)
25 1sfx_A Conserved hypothetical 66.6 4.4 0.00015 28.8 3.2 49 215-269 20-68 (109)
26 3f8b_A Transcriptional regulat 65.0 17 0.00059 27.0 6.4 56 212-268 9-66 (116)
27 3kp7_A Transcriptional regulat 64.7 3.7 0.00013 31.5 2.6 52 215-273 38-93 (151)
28 3i4p_A Transcriptional regulat 63.0 7.3 0.00025 30.8 4.1 47 216-268 4-50 (162)
29 2eth_A Transcriptional regulat 61.4 14 0.00047 28.3 5.4 47 217-269 46-92 (154)
30 2qww_A Transcriptional regulat 60.6 9.9 0.00034 29.0 4.4 46 216-267 42-87 (154)
31 3bja_A Transcriptional regulat 60.0 10 0.00035 28.2 4.3 46 217-268 35-80 (139)
32 2dk5_A DNA-directed RNA polyme 58.3 14 0.00049 26.5 4.6 36 227-268 34-69 (91)
33 3tgn_A ADC operon repressor AD 57.7 11 0.00037 28.4 4.1 44 219-269 42-85 (146)
34 2oqg_A Possible transcriptiona 57.5 11 0.00037 27.3 4.0 50 216-272 22-71 (114)
35 3bro_A Transcriptional regulat 57.1 17 0.00057 27.1 5.1 48 216-269 35-84 (141)
36 2dbb_A Putative HTH-type trans 56.7 13 0.00046 28.6 4.6 47 216-268 10-56 (151)
37 3oop_A LIN2960 protein; protei 56.5 10 0.00034 28.6 3.7 47 217-269 39-85 (143)
38 3jth_A Transcription activator 56.3 17 0.00057 25.7 4.8 54 217-277 25-78 (98)
39 1i1g_A Transcriptional regulat 55.8 9 0.00031 29.1 3.4 48 216-269 5-52 (141)
40 1jgs_A Multiple antibiotic res 55.8 16 0.00056 27.1 4.8 46 217-268 36-81 (138)
41 2gxg_A 146AA long hypothetical 55.6 30 0.001 25.7 6.5 47 216-269 38-84 (146)
42 2bv6_A MGRA, HTH-type transcri 55.0 10 0.00034 28.5 3.5 49 216-270 38-86 (142)
43 1ku9_A Hypothetical protein MJ 54.5 15 0.00052 27.5 4.5 38 226-269 38-75 (152)
44 2cfx_A HTH-type transcriptiona 53.9 13 0.00045 28.5 4.1 46 217-268 7-52 (144)
45 3cdh_A Transcriptional regulat 53.8 22 0.00074 27.0 5.4 50 214-269 42-91 (155)
46 1lj9_A Transcriptional regulat 53.7 16 0.00055 27.3 4.5 47 217-269 31-77 (144)
47 2nnn_A Probable transcriptiona 53.4 13 0.00044 27.6 3.9 46 218-269 41-86 (140)
48 3hsr_A HTH-type transcriptiona 53.4 9.9 0.00034 28.7 3.2 50 214-269 35-84 (140)
49 2p5v_A Transcriptional regulat 53.2 13 0.00044 29.1 4.0 46 217-268 12-57 (162)
50 2frh_A SARA, staphylococcal ac 53.0 12 0.0004 28.0 3.6 45 228-278 52-99 (127)
51 2vn2_A DNAD, chromosome replic 53.0 7.8 0.00027 29.5 2.6 25 245-269 61-85 (128)
52 3cjn_A Transcriptional regulat 52.9 15 0.00051 28.2 4.3 47 217-269 54-100 (162)
53 3g3z_A NMB1585, transcriptiona 52.5 15 0.00052 27.6 4.2 49 215-269 31-79 (145)
54 1ub9_A Hypothetical protein PH 52.1 11 0.00039 26.3 3.2 47 217-269 18-64 (100)
55 2nyx_A Probable transcriptiona 51.7 14 0.00047 28.9 4.0 46 217-268 47-92 (168)
56 3bpv_A Transcriptional regulat 51.6 12 0.00041 27.8 3.4 48 216-269 30-77 (138)
57 3s2w_A Transcriptional regulat 51.5 13 0.00043 28.7 3.6 49 215-269 50-98 (159)
58 2fbh_A Transcriptional regulat 51.3 18 0.00062 27.0 4.5 48 216-269 38-86 (146)
59 2fa5_A Transcriptional regulat 50.7 13 0.00046 28.5 3.7 48 216-269 50-97 (162)
60 2cg4_A Regulatory protein ASNC 50.5 15 0.00051 28.4 3.9 47 216-268 9-55 (152)
61 3k0l_A Repressor protein; heli 50.1 15 0.00052 28.4 3.9 50 214-269 45-94 (162)
62 2pn6_A ST1022, 150AA long hypo 50.0 16 0.00055 28.0 4.0 47 216-268 4-50 (150)
63 2hzt_A Putative HTH-type trans 49.6 40 0.0014 24.3 6.0 51 220-277 19-72 (107)
64 2rdp_A Putative transcriptiona 49.4 20 0.00069 26.9 4.5 45 219-269 46-90 (150)
65 3k2z_A LEXA repressor; winged 49.1 16 0.00056 29.6 4.1 55 213-273 7-62 (196)
66 3bdd_A Regulatory protein MARR 48.9 19 0.00065 26.7 4.2 49 216-270 32-80 (142)
67 2pg4_A Uncharacterized protein 48.5 11 0.00038 26.6 2.6 44 225-274 25-70 (95)
68 2w25_A Probable transcriptiona 48.4 17 0.0006 27.9 4.0 47 216-268 8-54 (150)
69 2pex_A Transcriptional regulat 48.2 15 0.0005 28.0 3.5 47 217-269 49-95 (153)
70 4hbl_A Transcriptional regulat 47.9 12 0.00041 28.5 2.9 49 215-269 41-89 (149)
71 2b0l_A GTP-sensing transcripti 47.5 19 0.00066 26.2 3.9 54 217-276 30-85 (102)
72 2ia0_A Putative HTH-type trans 47.5 18 0.00061 28.9 4.0 47 216-268 18-64 (171)
73 2hr3_A Probable transcriptiona 47.3 31 0.0011 25.7 5.3 45 219-269 39-84 (147)
74 3bj6_A Transcriptional regulat 47.2 20 0.0007 27.0 4.2 47 217-269 42-88 (152)
75 2f2e_A PA1607; transcription f 46.4 26 0.0009 27.0 4.8 50 220-277 29-80 (146)
76 2e1c_A Putative HTH-type trans 46.1 16 0.00054 29.2 3.5 47 216-268 28-74 (171)
77 3boq_A Transcriptional regulat 45.9 14 0.00049 28.3 3.1 48 216-269 48-96 (160)
78 3ech_A MEXR, multidrug resista 45.8 14 0.00046 27.8 2.9 50 215-270 37-86 (142)
79 3nrv_A Putative transcriptiona 44.6 21 0.00071 26.9 3.8 47 217-269 42-88 (148)
80 1xma_A Predicted transcription 44.5 31 0.001 26.8 4.9 56 213-269 39-96 (145)
81 2d1h_A ST1889, 109AA long hypo 44.5 20 0.0007 25.2 3.6 44 221-270 28-71 (109)
82 3eyy_A Putative iron uptake re 44.4 24 0.00081 27.4 4.2 52 219-271 23-74 (145)
83 3deu_A Transcriptional regulat 44.1 20 0.00068 28.0 3.8 47 217-269 55-102 (166)
84 2kko_A Possible transcriptiona 44.1 51 0.0018 23.8 5.9 54 215-275 25-78 (108)
85 2fsw_A PG_0823 protein; alpha- 43.6 40 0.0014 24.2 5.2 52 219-277 29-83 (107)
86 2cyy_A Putative HTH-type trans 43.0 19 0.00065 27.8 3.4 46 217-268 9-54 (151)
87 1oyi_A Double-stranded RNA-bin 42.7 41 0.0014 23.8 4.8 48 220-274 22-69 (82)
88 3e6m_A MARR family transcripti 42.1 19 0.00066 27.7 3.4 47 217-269 55-101 (161)
89 1u2w_A CADC repressor, cadmium 41.3 27 0.00092 26.0 3.9 51 219-275 46-96 (122)
90 1oks_A RNA polymerase alpha su 41.0 30 0.001 22.4 3.4 45 63-107 4-48 (56)
91 3eco_A MEPR; mutlidrug efflux 40.1 22 0.00074 26.4 3.3 48 216-269 32-81 (139)
92 2xub_A DNA-directed RNA polyme 39.8 1.7E+02 0.0057 27.7 10.1 108 136-268 300-407 (534)
93 2p5k_A Arginine repressor; DNA 39.0 63 0.0021 20.4 5.1 53 220-277 10-62 (64)
94 1r1u_A CZRA, repressor protein 38.8 61 0.0021 23.1 5.5 50 216-272 27-76 (106)
95 2fbi_A Probable transcriptiona 38.3 18 0.00063 26.8 2.6 47 217-269 38-84 (142)
96 3b73_A PHIH1 repressor-like pr 37.9 34 0.0012 25.5 4.0 47 217-269 15-63 (111)
97 1mzb_A Ferric uptake regulatio 37.7 75 0.0026 24.0 6.1 52 218-270 21-74 (136)
98 3pqk_A Biofilm growth-associat 37.7 47 0.0016 23.4 4.7 51 218-275 26-76 (102)
99 1z91_A Organic hydroperoxide r 37.1 22 0.00074 26.7 2.8 26 245-270 64-89 (147)
100 3f8m_A GNTR-family protein tra 36.7 43 0.0015 28.3 4.9 51 217-276 24-75 (248)
101 2x4h_A Hypothetical protein SS 36.3 42 0.0014 25.0 4.4 44 220-269 22-65 (139)
102 2a61_A Transcriptional regulat 36.1 22 0.00074 26.5 2.7 47 217-269 35-81 (145)
103 1on2_A Transcriptional regulat 36.1 31 0.0011 25.9 3.6 44 220-269 13-56 (142)
104 1q1h_A TFE, transcription fact 35.9 37 0.0013 24.4 3.9 44 219-268 22-66 (110)
105 3mwm_A ZUR, putative metal upt 35.8 66 0.0022 24.5 5.5 50 220-270 19-69 (139)
106 1z7u_A Hypothetical protein EF 35.4 67 0.0023 23.2 5.3 52 219-277 26-80 (112)
107 4ets_A Ferric uptake regulatio 35.3 60 0.002 25.6 5.3 53 217-269 35-89 (162)
108 1yg2_A Gene activator APHA; vi 35.0 46 0.0016 26.5 4.7 54 215-269 2-57 (179)
109 2fxa_A Protease production reg 34.7 30 0.001 28.3 3.5 44 221-270 54-97 (207)
110 3nqo_A MARR-family transcripti 34.3 49 0.0017 26.3 4.7 37 227-269 55-91 (189)
111 3fm5_A Transcriptional regulat 34.0 36 0.0012 25.6 3.7 48 216-269 40-88 (150)
112 1y0u_A Arsenical resistance op 33.6 47 0.0016 23.2 4.0 45 217-269 33-77 (96)
113 1yyv_A Putative transcriptiona 33.4 66 0.0023 24.2 5.1 51 220-277 40-93 (131)
114 4a5n_A Uncharacterized HTH-typ 33.1 97 0.0033 23.5 6.0 52 219-277 30-84 (131)
115 2jsc_A Transcriptional regulat 32.5 45 0.0015 24.5 3.9 51 218-275 24-74 (118)
116 3jw4_A Transcriptional regulat 32.4 20 0.00069 27.0 1.9 47 217-269 43-91 (148)
117 1v4r_A Transcriptional repress 31.9 40 0.0014 24.0 3.4 49 216-270 20-70 (102)
118 1s3j_A YUSO protein; structura 31.4 26 0.00089 26.5 2.4 47 217-269 39-85 (155)
119 3c18_A Nucleotidyltransferase- 30.3 58 0.002 28.7 4.7 67 206-276 213-283 (290)
120 2heo_A Z-DNA binding protein 1 30.2 33 0.0011 22.7 2.5 45 219-269 14-59 (67)
121 2qvo_A Uncharacterized protein 30.1 29 0.00099 24.4 2.4 37 230-273 31-67 (95)
122 3df8_A Possible HXLR family tr 29.9 84 0.0029 22.8 5.0 48 220-275 32-82 (111)
123 4esf_A PADR-like transcription 29.9 1.3E+02 0.0044 22.1 6.2 56 212-269 8-64 (117)
124 4aik_A Transcriptional regulat 29.8 61 0.0021 24.8 4.4 25 245-269 56-80 (151)
125 2co5_A Viral protein F93; vira 29.2 86 0.0029 22.6 4.9 43 228-270 23-65 (99)
126 3bwg_A Uncharacterized HTH-typ 28.5 84 0.0029 26.2 5.4 42 223-270 22-64 (239)
127 2w57_A Ferric uptake regulatio 28.4 70 0.0024 24.7 4.6 52 218-270 20-73 (150)
128 2esh_A Conserved hypothetical 28.3 73 0.0025 23.4 4.5 54 214-269 12-69 (118)
129 4esb_A Transcriptional regulat 28.1 80 0.0027 23.2 4.6 55 212-268 6-61 (115)
130 1uly_A Hypothetical protein PH 27.9 64 0.0022 26.2 4.4 46 216-268 21-66 (192)
131 3l7w_A Putative uncharacterize 27.5 57 0.002 23.6 3.7 55 212-269 6-60 (108)
132 1j5y_A Transcriptional regulat 26.9 60 0.0021 25.9 4.0 44 219-268 25-70 (187)
133 1r7j_A Conserved hypothetical 26.4 1.2E+02 0.0043 21.4 5.3 35 230-270 21-55 (95)
134 1f1e_A Histone fold protein; a 26.0 27 0.00092 27.8 1.6 24 246-269 57-80 (154)
135 3hhh_A Transcriptional regulat 25.9 1E+02 0.0035 22.7 4.9 56 211-268 9-65 (116)
136 2xig_A Ferric uptake regulatio 25.8 1.4E+02 0.0049 22.8 6.0 59 218-277 30-89 (150)
137 3f3x_A Transcriptional regulat 25.6 35 0.0012 25.4 2.2 46 217-269 39-84 (144)
138 2fe3_A Peroxide operon regulat 25.5 1.6E+02 0.0054 22.4 6.2 60 217-277 24-84 (145)
139 1b4a_A Arginine repressor; hel 25.5 1.6E+02 0.0053 23.0 6.1 58 216-278 6-63 (149)
140 3by6_A Predicted transcription 25.2 72 0.0025 23.9 3.9 42 223-270 28-70 (126)
141 3eet_A Putative GNTR-family tr 24.9 73 0.0025 27.2 4.4 41 224-270 47-88 (272)
142 3cuq_B Vacuolar protein-sortin 24.6 99 0.0034 25.8 5.0 47 225-277 164-210 (218)
143 1hsj_A Fusion protein consisti 24.5 58 0.002 29.8 4.0 34 245-278 430-466 (487)
144 2h09_A Transcriptional regulat 24.2 69 0.0024 24.3 3.8 46 219-270 44-89 (155)
145 3u2r_A Regulatory protein MARR 23.6 36 0.0012 26.3 2.0 47 217-269 48-96 (168)
146 3edp_A LIN2111 protein; APC883 23.1 1.3E+02 0.0044 25.0 5.6 42 223-270 26-68 (236)
147 2wv0_A YVOA, HTH-type transcri 22.2 1.2E+02 0.0042 25.2 5.3 47 223-276 27-74 (243)
148 3ri2_A Transcriptional regulat 21.5 2.5E+02 0.0086 20.8 6.7 57 209-268 15-71 (123)
149 3f6o_A Probable transcriptiona 21.4 59 0.002 23.8 2.7 51 218-275 21-71 (118)
150 1bja_A Transcription regulator 21.4 91 0.0031 22.6 3.6 52 214-270 15-66 (95)
151 1hym_B CMTI-V, hydrolyzed cucu 21.0 42 0.0014 18.4 1.3 11 3-13 7-17 (26)
152 1z6r_A MLC protein; transcript 21.0 1.1E+02 0.0037 27.4 5.0 46 218-269 19-64 (406)
153 2wte_A CSA3; antiviral protein 21.0 96 0.0033 26.2 4.3 45 219-269 156-200 (244)
154 1rbl_M Ribulose 1,5 bisphospha 20.9 56 0.0019 24.4 2.4 18 248-265 21-38 (109)
155 2o03_A Probable zinc uptake re 20.6 1.9E+02 0.0064 21.4 5.6 52 225-277 22-73 (131)
156 1wj5_A Hypothetical protein (r 20.4 68 0.0023 24.2 2.7 25 249-273 77-101 (120)
157 3hrs_A Metalloregulator SCAR; 20.0 1.2E+02 0.0041 24.8 4.6 45 220-270 11-55 (214)
No 1
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=100.00 E-value=6.9e-64 Score=470.82 Aligned_cols=262 Identities=33% Similarity=0.442 Sum_probs=223.4
Q ss_pred cCcchhhHHHHhhhcccCCCCC--CCCCCCcc---------cccccCChhHHHHHHHHHHHhHhcCCCCCChHHHHHHHH
Q psy8359 17 LNKSKTRAWNRDTCSSLFPPRK--QALSTHEK---------SPIQISIKVNVSSVEKVDLAKRLLVGKSASVDAEKSMLS 85 (279)
Q Consensus 17 ~~~~~~p~~lA~Y~D~ll~~~~--~~~~~~~~---------~~i~l~~KD~Fe~~Y~~~LakRLL~~~s~s~~~E~~~I~ 85 (279)
||++++||+||+|||.++|++. .+.++.+. -|.||++||+|+.+|+++||+|||.+++.+.|.|+.||+
T Consensus 1 ~~~~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~ 80 (382)
T 3dpl_C 1 GSESKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVE 80 (382)
T ss_dssp --CCCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6889999999999999999862 23333221 245999999999999999999999999999999999999
Q ss_pred HHHHhcCC--chhHhHHHHHhhHHHhHHHHHHHHHHHhcCC-----------------CCC-----Ccc-----------
Q psy8359 86 KLKQECGG--GFTSKLEGMFKDMELSKDINVAFKQYMGNLK-----------------EDK-----EST----------- 130 (279)
Q Consensus 86 ~Lk~~cG~--~~t~kle~M~~D~~~S~~l~~~F~~~~~~~~-----------------~~~-----d~~----------- 130 (279)
+|| +||. +||+||++||+|++.|++++.+|++++.+.+ ||. ++.
T Consensus 81 kLK-~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~ 159 (382)
T 3dpl_C 81 WLR-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPE 159 (382)
T ss_dssp HHH-HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHH
T ss_pred HHH-HcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEccCCcCCCCCCCCCccCCHHHHHHHHH
Confidence 999 9997 9999999999999999999999999865321 010 110
Q ss_pred ------------------------------------------------cccc-----------cCCCCCHHHHHHHHhHh
Q psy8359 131 ------------------------------------------------SNNA-----------LGIDLTDADLRRTLQSL 151 (279)
Q Consensus 131 ------------------------------------------------FN~~-----------~~t~i~~~~l~~~L~sL 151 (279)
||+. +.|||+.++|+++|+||
T Consensus 160 F~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL 239 (382)
T 3dpl_C 160 VEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSL 239 (382)
T ss_dssp HHHHHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEecCcccEEEEEEeCCceEEEEEcHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 8862 78999999999999999
Q ss_pred hcC---CceeeeeCCCC---CCCCCCCeEEEecCCCCc-----eeeEEeeccc--cccchHHHHHHHHHHHhhhhhhhhh
Q psy8359 152 ACG---KTRVLKKTPAS---RDIEDCDRFRFNNDFTFK-----LFRIKINQIQ--MKETNEEQKATEERVFQDRQYQIDA 218 (279)
Q Consensus 152 ~~~---k~~iL~~~~~~---~~i~~~~~f~~N~~F~~k-----~~ki~i~~~~--~k~~~~e~~~~~~~i~~~R~~~I~A 218 (279)
++. |++||.+.|.+ +++.+++.|+||.+|++. .+|++|+.+. +.++..+..++++.+++||.+.|||
T Consensus 240 ~~~~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~A 319 (382)
T 3dpl_C 240 VAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQE 319 (382)
T ss_dssp HCCTTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhcceeeecCCccccCcCCCCCEEEEcCCCcCCcccccceeEEEecccccccccchhhhhhHHHHHHHhhheeeE
Confidence 873 56899998753 678999999999999871 2566666443 2245556677899999999999999
Q ss_pred hhhhhhccCCCCCHHHHHHHHHHhcC--CCCChHHHHHHHHhhhhcCceeecCCCCCceEecC
Q psy8359 219 AIVRIMKMRKTLSHNLLLSELFNQLK--FPVKPADLKKRIESLIDRDYMERDKDKANSYNYMA 279 (279)
Q Consensus 219 aIVRIMK~~K~l~~~~L~~eV~~~l~--F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~Yva 279 (279)
|||||||+||+|+|++|+.||+++++ |.|++.+||+|||+||+||||+|+++|+++|+|+|
T Consensus 320 aIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 320 AIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 382 (382)
T ss_dssp HHHHHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred EEehhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeEEEcC
Confidence 99999999999999999999999998 99999999999999999999999999999999998
No 2
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=6.2e-61 Score=485.15 Aligned_cols=273 Identities=34% Similarity=0.441 Sum_probs=241.4
Q ss_pred EEeccCcccccccCcchhhHHHHhhhcccCCCCCCCCCCCcc---------cccccCChhHHHHHHHHHHHhHhcCCCCC
Q psy8359 5 VLISSNGISSVSLNKSKTRAWNRDTCSSLFPPRKQALSTHEK---------SPIQISIKVNVSSVEKVDLAKRLLVGKSA 75 (279)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~p~~lA~Y~D~ll~~~~~~~~~~~~---------~~i~l~~KD~Fe~~Y~~~LakRLL~~~s~ 75 (279)
.|||.|.++..+...+++|++||+|||.++|++.++.++.+. -|.|+++||+|+.+|+++||+|||.+++.
T Consensus 385 ~~iN~~~~~~~~~~~~~~~E~la~y~D~~Lkk~~k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~ 464 (760)
T 1ldj_A 385 RFINNNAVTKMAQSSSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSA 464 (760)
T ss_dssp HHHHSSHHHHHHTSTTHHHHHHHHHHHHHHBCCSSCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTCBS
T ss_pred HHhcCCccccccccccccHHHHHHHhHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC
Confidence 468888776435677899999999999999987654433222 13499999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhcCCchhHhHHHHHhhHHHhHHHHHHHHHHHhc-C--------------CCC----------CCcc
Q psy8359 76 SVDAEKSMLSKLKQECGGGFTSKLEGMFKDMELSKDINVAFKQYMGN-L--------------KED----------KEST 130 (279)
Q Consensus 76 s~~~E~~~I~~Lk~~cG~~~t~kle~M~~D~~~S~~l~~~F~~~~~~-~--------------~~~----------~d~~ 130 (279)
|.|.|+.||++||.+||.+||+||++||+|+..|++++..|+++..+ . .+| +++.
T Consensus 465 s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~ 544 (760)
T 1ldj_A 465 SDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFSIQVLSSGSWPFQQSCTFALPSELE 544 (760)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSSEEEEEEEETTTSCCCCCSCCCCCGGGH
T ss_pred ChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCeeEEecCCCCCCCCCCCCCcCCHHHH
Confidence 99999999999999999999999999999999999999999998754 1 112 0100
Q ss_pred -----------------------------------------------------cccc---------cCCCCCHHHHHHHH
Q psy8359 131 -----------------------------------------------------SNNA---------LGIDLTDADLRRTL 148 (279)
Q Consensus 131 -----------------------------------------------------FN~~---------~~t~i~~~~l~~~L 148 (279)
||+. +.|||+.++|+++|
T Consensus 545 ~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l~r~L 624 (760)
T 1ldj_A 545 RSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVL 624 (760)
T ss_dssp HHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 7765 78999999999999
Q ss_pred hHhhcCCceeeeeCC-----CCCCCCCCCeEEEecCCCCceeeEEeeccccccchHHHHHHHHHHHhhhhhhhhhhhhhh
Q psy8359 149 QSLACGKTRVLKKTP-----ASRDIEDCDRFRFNNDFTFKLFRIKINQIQMKETNEEQKATEERVFQDRQYQIDAAIVRI 223 (279)
Q Consensus 149 ~sL~~~k~~iL~~~~-----~~~~i~~~~~f~~N~~F~~k~~ki~i~~~~~k~~~~e~~~~~~~i~~~R~~~I~AaIVRI 223 (279)
++|+ +.+||.+.| .++++.+++.|++|.+|++++.||+++.+..+++..|...+++.+++||.+.||||||||
T Consensus 625 ~~l~--k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~~~i~AaIVRI 702 (760)
T 1ldj_A 625 QILL--KSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRI 702 (760)
T ss_dssp HHHH--HTTTEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HCCcceeCCCccccccCCCCCCCEEEeeccccCCceEEEecCccccccchhhhhHHHHHHHHHHhHheeeehhh
Confidence 9999 888998665 788999999999999999999999998666667777777889999999999999999999
Q ss_pred hccCCCCCHHHHHHHHHHhcC--CCCChHHHHHHHHhhhhcCceeecCCCCCceEecC
Q psy8359 224 MKMRKTLSHNLLLSELFNQLK--FPVKPADLKKRIESLIDRDYMERDKDKANSYNYMA 279 (279)
Q Consensus 224 MK~~K~l~~~~L~~eV~~~l~--F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~Yva 279 (279)
||+||+|+|++|+.+|+++++ |+|++++||+|||+||+||||+|+++|+++|+|+|
T Consensus 703 MK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~YlA 760 (760)
T 1ldj_A 703 MKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 760 (760)
T ss_dssp HHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEEECC
T ss_pred hhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCCCCCcceeeCC
Confidence 999999999999999999998 99999999999999999999999999999999998
No 3
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=6.3e-60 Score=477.73 Aligned_cols=261 Identities=65% Similarity=0.875 Sum_probs=236.7
Q ss_pred cchhhHHHHhhhcccCCCCCCCCCCCcc---------cccccCChhHHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHHH
Q psy8359 19 KSKTRAWNRDTCSSLFPPRKQALSTHEK---------SPIQISIKVNVSSVEKVDLAKRLLVGKSASVDAEKSMLSKLKQ 89 (279)
Q Consensus 19 ~~~~p~~lA~Y~D~ll~~~~~~~~~~~~---------~~i~l~~KD~Fe~~Y~~~LakRLL~~~s~s~~~E~~~I~~Lk~ 89 (279)
..++|++||+|||.++|++.++.++.+. -|.|+++||+|+.+|+++||+|||.+++.+.|.|+.||++||.
T Consensus 402 ~~~~~E~la~y~D~~Lk~~~k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~ 481 (759)
T 2hye_C 402 PNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKH 481 (759)
T ss_dssp CSHHHHHHHHHHHHHHSSCGGGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 4689999999999999987554444332 1349999999999999999999999999999999999999999
Q ss_pred hcCCchhHhHHHHHhhHHHhHHHHHHHHHHHhcCC----------------CCC----Ccc-------------------
Q psy8359 90 ECGGGFTSKLEGMFKDMELSKDINVAFKQYMGNLK----------------EDK----EST------------------- 130 (279)
Q Consensus 90 ~cG~~~t~kle~M~~D~~~S~~l~~~F~~~~~~~~----------------~~~----d~~------------------- 130 (279)
+||.+||+||++||+|+..|++++..|++++.+.+ +|. ++.
T Consensus 482 ~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~ 561 (759)
T 2hye_C 482 ECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGK 561 (759)
T ss_dssp TTCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEEeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999874321 120 110
Q ss_pred ----------------------------------------cccc---------cCCCCCHHHHHHHHhHhhcCCceeeee
Q psy8359 131 ----------------------------------------SNNA---------LGIDLTDADLRRTLQSLACGKTRVLKK 161 (279)
Q Consensus 131 ----------------------------------------FN~~---------~~t~i~~~~l~~~L~sL~~~k~~iL~~ 161 (279)
||+. +.|||++++|+++|++|+++|.+||.+
T Consensus 562 ~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~ 641 (759)
T 2hye_C 562 HSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIK 641 (759)
T ss_dssp SCSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEE
T ss_pred CCCCEEEeccccCcEEEEEEeCCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHccCCceeec
Confidence 7765 789999999999999999989999999
Q ss_pred CCCCCCCCCCCeEEEecCCCCceeeEEeeccccccchHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCHHHHHHHHHH
Q psy8359 162 TPASRDIEDCDRFRFNNDFTFKLFRIKINQIQMKETNEEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFN 241 (279)
Q Consensus 162 ~~~~~~i~~~~~f~~N~~F~~k~~ki~i~~~~~k~~~~e~~~~~~~i~~~R~~~I~AaIVRIMK~~K~l~~~~L~~eV~~ 241 (279)
.|.++++.+++.|++|.+|++++.||+++.+..+++.+|...+++.+++||.+.||||||||||+||+|+|++|+.+|++
T Consensus 642 ~p~~~~v~~~d~f~lN~~f~~~~~riki~~i~~~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ 721 (759)
T 2hye_C 642 SPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYN 721 (759)
T ss_dssp TTCSSSCCSSCEEEECCCCCCSCSSEECGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEeeccccCCceEEEeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999777677777888899999999999999999999999999999999999999
Q ss_pred hcCCCCChHHHHHHHHhhhhcCceeecCCCCCceEecC
Q psy8359 242 QLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNYMA 279 (279)
Q Consensus 242 ~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~Yva 279 (279)
+++|+|++.+||+|||+||+||||+|+++|+++|+|+|
T Consensus 722 ql~F~p~~~~IKk~Ie~LIereYleR~~~~~~~y~YlA 759 (759)
T 2hye_C 722 QLKFPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYVA 759 (759)
T ss_dssp HSSSCCCHHHHHHHHHHHHHTTSCBCCSSCTTEEECCC
T ss_pred HcCCCCCHHHHHHHHHHHhcccceecCCCCCCeeEecC
Confidence 99999999999999999999999999999999999998
No 4
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.97 E-value=5.3e-32 Score=206.68 Aligned_cols=93 Identities=82% Similarity=1.137 Sum_probs=85.1
Q ss_pred EEeeccccccchHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCcee
Q psy8359 187 IKINQIQMKETNEEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYME 266 (279)
Q Consensus 187 i~i~~~~~k~~~~e~~~~~~~i~~~R~~~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~ 266 (279)
++++.+..+++..|..++++.+++||.+.||||||||||++|+|+|++|+.+|+++++|+|++.+||+|||+||+||||+
T Consensus 3 ~ki~~i~~ke~~~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~F~p~~~~IKk~IE~LIereYle 82 (101)
T 2do7_A 3 SGSSGIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDYME 82 (101)
T ss_dssp CSSCSCCCCCCCCCCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHTTSEE
T ss_pred eeecccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhHHh
Confidence 34555555566667777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCceEecC
Q psy8359 267 RDKDKANSYNYMA 279 (279)
Q Consensus 267 R~~~d~~~y~Yva 279 (279)
|+++|+++|+|+|
T Consensus 83 R~~~d~~~y~YlA 95 (101)
T 2do7_A 83 RDKENPNQYNYIA 95 (101)
T ss_dssp ECSSCTTEEEECC
T ss_pred cCCCCCCeEEEec
Confidence 9999999999997
No 5
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=99.96 E-value=2.3e-30 Score=193.00 Aligned_cols=80 Identities=38% Similarity=0.629 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCHHHHHHHHHHhcC--CCCChHHHHHHHHhhhhcCceeecCCCCCceE
Q psy8359 199 EEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLK--FPVKPADLKKRIESLIDRDYMERDKDKANSYN 276 (279)
Q Consensus 199 ~e~~~~~~~i~~~R~~~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~--F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~ 276 (279)
+|..++++.++++|.+.||||||||||++|+|+|++|+.+|+++++ |+|++++||+|||+||+||||+|+++| ++|+
T Consensus 7 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~ 85 (88)
T 3o2p_E 7 TEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYA 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEE
T ss_pred chHHHHHHHHHHHhhhhhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeEE
Confidence 4667789999999999999999999999999999999999999998 999999999999999999999999988 9999
Q ss_pred ecC
Q psy8359 277 YMA 279 (279)
Q Consensus 277 Yva 279 (279)
|+|
T Consensus 86 YlA 88 (88)
T 3o2p_E 86 YLA 88 (88)
T ss_dssp ECC
T ss_pred eeC
Confidence 998
No 6
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=99.96 E-value=1.5e-30 Score=189.59 Aligned_cols=74 Identities=45% Similarity=0.731 Sum_probs=71.6
Q ss_pred HHHHhhhhhhhhhhhhhhhccCCCCCHHHHHHHHHHhcC--CCCChHHHHHHHHhhhhcCceeecCCCCCceEecC
Q psy8359 206 ERVFQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLK--FPVKPADLKKRIESLIDRDYMERDKDKANSYNYMA 279 (279)
Q Consensus 206 ~~i~~~R~~~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~--F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~Yva 279 (279)
+.+++||.+.||||||||||++|+|+|++|+.+|+++++ |+|++++||+|||+||+||||+|+++|+++|+|+|
T Consensus 2 k~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y~Y~A 77 (77)
T 3tdu_C 2 SNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 77 (77)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred cchhhhhhheEeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceEEEeC
Confidence 368899999999999999999999999999999999998 99999999999999999999999999999999998
No 7
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=99.96 E-value=4.8e-31 Score=198.55 Aligned_cols=84 Identities=48% Similarity=0.772 Sum_probs=78.3
Q ss_pred cchHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCHHHHHHHHHHhcC--CCCChHHHHHHHHhhhhcCceeecCCCCC
Q psy8359 196 ETNEEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLK--FPVKPADLKKRIESLIDRDYMERDKDKAN 273 (279)
Q Consensus 196 ~~~~e~~~~~~~i~~~R~~~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~--F~p~~~~iK~~Ie~LIekeYi~R~~~d~~ 273 (279)
++..|...+++.+++||.+.||||||||||++|+|+|++|+.+|+++++ |+|++.+||+|||+||+||||+|+++|++
T Consensus 7 e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d~~ 86 (92)
T 1iuy_A 7 ESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRK 86 (92)
T ss_dssp CCCCCCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSCSS
T ss_pred ccHHHHHHHHHHHHHHHHHHeeeeeeehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCCCCC
Confidence 4455556678899999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred ceEecC
Q psy8359 274 SYNYMA 279 (279)
Q Consensus 274 ~y~Yva 279 (279)
+|+|+|
T Consensus 87 ~y~Y~A 92 (92)
T 1iuy_A 87 VYTYVA 92 (92)
T ss_dssp EEEEC-
T ss_pred eeEecC
Confidence 999997
No 8
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=91.78 E-value=0.17 Score=35.35 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=49.6
Q ss_pred hhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCceEecC
Q psy8359 219 AIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNYMA 279 (279)
Q Consensus 219 aIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~Yva 279 (279)
..|...|.+|....++|-.+ |..+.+++-.+|+.|.+.|-|.=--+|+..|+||.
T Consensus 11 ~Fi~yIk~~Kvv~LedLA~~------F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 11 EFINYIKKSKVVLLEDLAFQ------MGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHHCSEECHHHHHHH------HCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHHcCeeeHHHHHHH------hCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 34778899999999988888 99999999999999999999998888899999984
No 9
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=89.57 E-value=0.45 Score=33.77 Aligned_cols=44 Identities=7% Similarity=0.103 Sum_probs=40.2
Q ss_pred hhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeec
Q psy8359 219 AIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 219 aIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
.|...++.++.++..+|..+ |..+...|.+-++.|.++|+|+|-
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~------l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQT------LNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHH------TTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEEe
Confidence 46777788999999988888 999999999999999999999997
No 10
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=88.75 E-value=0.14 Score=38.06 Aligned_cols=61 Identities=10% Similarity=0.255 Sum_probs=43.0
Q ss_pred hhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCceEecC
Q psy8359 216 IDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNYMA 279 (279)
Q Consensus 216 I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~Yva 279 (279)
-|..|.+++-....++..+|...+-.. -..+..-|...|+.|.++|||+|.. +...|.|-|
T Consensus 36 ~e~~VL~~L~~~~~~t~~eL~~~l~~~--~~~s~sTVt~~L~rLe~KGlV~R~~-~gR~~~Y~p 96 (99)
T 2k4b_A 36 AELIVMRVIWSLGEARVDEIYAQIPQE--LEWSLATVKTLLGRLVKKEMLSTEK-EGRKFVYRP 96 (99)
T ss_dssp SCSHHHHHHHHHSCEEHHHHHHTCCGG--GCCCHHHHHHHHHHHHHTTSCEEEE-ETTEEEEEC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhcc--cCCCHhhHHHHHHHHHHCCCEEEEe-CCCEEEEEE
Confidence 344555555555667776665553221 2457899999999999999999986 456888865
No 11
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=88.18 E-value=0.64 Score=32.53 Aligned_cols=60 Identities=13% Similarity=0.340 Sum_probs=44.0
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCceEecC
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNYMA 279 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~Yva 279 (279)
|..|.+++-....++..+|...+-.. -..+...+-..|+.|.++|||.|..+ ...|.|-|
T Consensus 11 e~~vL~~L~~~~~~t~~ei~~~l~~~--~~~s~~Tv~~~l~rL~~kGlv~r~~~-gr~~~y~~ 70 (82)
T 1p6r_A 11 ELEVMKVIWKHSSINTNEVIKELSKT--STWSPKTIQTMLLRLIKKGALNHHKE-GRVFVYTP 70 (82)
T ss_dssp HHHHHHHHHTSSSEEHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHhhc--CCccHHHHHHHHHHHHHCCCeEEEec-CCEEEEEe
Confidence 33445555556778888888776443 23588999999999999999999874 45677753
No 12
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=86.94 E-value=0.55 Score=34.09 Aligned_cols=45 Identities=7% Similarity=0.113 Sum_probs=40.1
Q ss_pred hhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 219 AIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 219 aIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
.|...++.++.++..+|..+ |..+...|.+-|+.|.++|+|.|..
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~------l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSAR------LQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHH------TTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 36677788899999888888 9999999999999999999999973
No 13
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=79.12 E-value=1.7 Score=32.54 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=41.9
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCceEec
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNYM 278 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~Yv 278 (279)
|..|.+++-....++..+|...+-.. ...+.+.+...|..|.++|||.|..++ ..+.|.
T Consensus 12 q~~vL~~L~~~~~~t~~el~~~l~~~--~~~~~~Tvt~~l~rLe~kGlv~R~~~~-r~~~~~ 70 (126)
T 1sd4_A 12 EWDVMNIIWDKKSVSANEIVVEIQKY--KEVSDKTIRTLITRLYKKEIIKRYKSE-NIYFYS 70 (126)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHhhc--CCCChhhHHHHHHHHHHCCceEEEeCC-CeEEEE
Confidence 34445555556677777777765321 235789999999999999999998754 467774
No 14
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=78.74 E-value=4.2 Score=28.13 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=44.2
Q ss_pred hhhhhhhccC--CCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCceEe
Q psy8359 218 AAIVRIMKMR--KTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNY 277 (279)
Q Consensus 218 AaIVRIMK~~--K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~Y 277 (279)
.+|..++... ..++..+|...+.+.. ...+.+.|-+.++.|.+.|+|.|...+.+...|
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~-~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMG-EEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhC-CCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 4556666654 6899999988875543 356899999999999999999998654344444
No 15
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=76.61 E-value=2.4 Score=32.22 Aligned_cols=58 Identities=12% Similarity=0.324 Sum_probs=43.2
Q ss_pred hhhhhhhhhhccCCC--CCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC--CCCC--ceEec
Q psy8359 215 QIDAAIVRIMKMRKT--LSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK--DKAN--SYNYM 278 (279)
Q Consensus 215 ~I~AaIVRIMK~~K~--l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~--~d~~--~y~Yv 278 (279)
..+..|.+++..... ++..+|...+ ..+.+.+-+.|+.|.++|||.|.. .|+. .|.|.
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l------~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~ 89 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSL------KLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYK 89 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEe
Confidence 346667777766655 8998887774 579999999999999999999953 2333 45664
No 16
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=76.38 E-value=4.3 Score=28.13 Aligned_cols=44 Identities=9% Similarity=0.096 Sum_probs=35.6
Q ss_pred hhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeec
Q psy8359 219 AIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 219 aIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
.|.+.+.....++..+|... +..+.+.+.+.+..|.+.|+|++.
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~------lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEA------LAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHH------HTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEEe
Confidence 35556666677888877777 578899999999999999999965
No 17
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=75.75 E-value=2.3 Score=29.90 Aligned_cols=39 Identities=10% Similarity=0.085 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCC
Q psy8359 228 KTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKA 272 (279)
Q Consensus 228 K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~ 272 (279)
...+..||... |-.+...|.+-+..|-++|||+|+.+.+
T Consensus 23 ~~psv~EIa~~------lgvS~~TVrr~L~~Le~kG~I~R~~ggr 61 (77)
T 2jt1_A 23 APVKTRDIADA------AGLSIYQVRLYLEQLHDVGVLEKVNAGK 61 (77)
T ss_dssp SCEEHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEESCSS
T ss_pred CCcCHHHHHHH------HCCCHHHHHHHHHHHHHCCcEEecCCCC
Confidence 66677766665 4557888999999999999999997543
No 18
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=75.59 E-value=2.6 Score=32.51 Aligned_cols=59 Identities=8% Similarity=0.125 Sum_probs=41.0
Q ss_pred hhhhhhhhcc-CCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCceEec
Q psy8359 217 DAAIVRIMKM-RKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNYM 278 (279)
Q Consensus 217 ~AaIVRIMK~-~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~Yv 278 (279)
|..|.+++-. ...++..+|...+-.. -..+...|-..|+.|.++|||.|..++ ..+.|.
T Consensus 11 e~~vL~~L~~~~~~~t~~el~~~l~~~--~~~~~~Tvt~~l~rLe~kGlv~r~~~~-r~~~~~ 70 (138)
T 2g9w_A 11 ERAVMDHLWSRTEPQTVRQVHEALSAR--RDLAYTTVMAVLQRLAKKNLVLQIRDD-RAHRYA 70 (138)
T ss_dssp HHHHHHHHHTCSSCEEHHHHHHHHTTT--CCCCHHHHHHHHHHHHHTTSEEEEC----CCEEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhcc--CCCCHHHHHHHHHHHHHCCCEEEEecC-CeEEEE
Confidence 4455566655 4678888777775322 235889999999999999999998754 466663
No 19
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=75.33 E-value=2.7 Score=29.41 Aligned_cols=52 Identities=10% Similarity=0.218 Sum_probs=41.3
Q ss_pred hhhhhhhccCC---CCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCce
Q psy8359 218 AAIVRIMKMRK---TLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSY 275 (279)
Q Consensus 218 AaIVRIMK~~K---~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y 275 (279)
-.|..+|+... .++..+|-.++ -.+...|.+.|..|.+.|+|+|..+.|..|
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~L------gvs~~tV~~~L~~L~~~G~I~~~g~~~~~W 71 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKL------GTPKKEINRVLYSLAKKGKLQKEAGTPPLW 71 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHH------CCCHHHHHHHHHHHHHHTSEEEECSSSCEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEecCCCCCce
Confidence 33667788887 88888887774 577889999999999999999976655443
No 20
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=73.93 E-value=2.9 Score=31.11 Aligned_cols=56 Identities=25% Similarity=0.468 Sum_probs=40.4
Q ss_pred hhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCceEec
Q psy8359 220 IVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNYM 278 (279)
Q Consensus 220 IVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~Yv 278 (279)
|..++.....++..+|...+-.. ...+.+.+-..|..|.++|||+|..+| ..+.|+
T Consensus 15 vL~~l~~~~~~t~~ela~~l~~~--~~~s~~tv~~~l~~L~~~Glv~r~~~~-rr~~~~ 70 (123)
T 1okr_A 15 VMNIIWMKKYASANNIIEEIQMQ--KDWSPKTIRTLITRLYKKGFIDRKKDN-KIFQYY 70 (123)
T ss_dssp HHHHHHHHSSEEHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHTSEEEEEET-TEEEEE
T ss_pred HHHHHHhCCCcCHHHHHHHHhcc--CCCcHhhHHHHHHHHHHCCCeEEEecC-CeEEEE
Confidence 34444446678888887776433 346789999999999999999998764 445554
No 21
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=73.55 E-value=4.5 Score=28.58 Aligned_cols=55 Identities=9% Similarity=0.097 Sum_probs=42.4
Q ss_pred hhhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCce
Q psy8359 215 QIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSY 275 (279)
Q Consensus 215 ~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y 275 (279)
..+..|.+.+.....++..+|... +..+.+.+-+.+..|.+.|||.|..+.+..|
T Consensus 24 ~~~~~il~~l~~~~~~s~~ela~~------l~is~~tvs~~l~~L~~~glv~~~~~~r~~~ 78 (99)
T 3cuo_A 24 PKRLLILCMLSGSPGTSAGELTRI------TGLSASATSQHLARMRDEGLIDSQRDAQRIL 78 (99)
T ss_dssp HHHHHHHHHHTTCCSEEHHHHHHH------HCCCHHHHHHHHHHHHHTTSEEEEECSSCEE
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEEEecCCEEE
Confidence 345556677777668888887777 4678999999999999999999987554443
No 22
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=73.16 E-value=4.8 Score=28.51 Aligned_cols=52 Identities=8% Similarity=0.196 Sum_probs=41.7
Q ss_pred hhhhhhhhccCC---CCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCc
Q psy8359 217 DAAIVRIMKMRK---TLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANS 274 (279)
Q Consensus 217 ~AaIVRIMK~~K---~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~ 274 (279)
+-.|..+++... .++..+|-.+ +-.+...|.++|..|.+.|+|++....+..
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~------Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~ 66 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGK------LGTPKKEINRVLYSLAKKGKLQKEAGTPPL 66 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEESSSSCE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEecCCCCCe
Confidence 344667788888 8999888877 468889999999999999999997655543
No 23
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=68.07 E-value=4.7 Score=28.76 Aligned_cols=55 Identities=11% Similarity=0.265 Sum_probs=38.3
Q ss_pred hhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCce
Q psy8359 219 AIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSY 275 (279)
Q Consensus 219 aIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y 275 (279)
.|...+.....++..+|..++.+. +..+.+.+-+.|..|.++|||+|..+.+..+
T Consensus 12 ~iL~~l~~~~~~~~~el~~~la~~--l~is~~tvs~~l~~Le~~gli~r~~~~r~~~ 66 (99)
T 1tbx_A 12 IVLAYLYDNEGIATYDLYKKVNAE--FPMSTATFYDAKKFLIQEGFVKERQERGEKR 66 (99)
T ss_dssp HHHHHHTTCTTCBHHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHHHcCCcCHHHHHHHHHHH--cCCCHHHHHHHHHHHHHCCCEEEEecCCceE
Confidence 344444556677777775444332 5678899999999999999999976544333
No 24
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=67.45 E-value=3.8 Score=31.91 Aligned_cols=23 Identities=9% Similarity=0.339 Sum_probs=21.4
Q ss_pred CCCChHHHHHHHHhhhhcCceee
Q psy8359 245 FPVKPADLKKRIESLIDRDYMER 267 (279)
Q Consensus 245 F~p~~~~iK~~Ie~LIekeYi~R 267 (279)
+..++..|-+.|..|+++|||+|
T Consensus 61 ~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 61 MSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp SSSCHHHHHHHHHHHHHHTSCEE
T ss_pred HCcCHHHHHHHHHHHHHCCCEEE
Confidence 66788999999999999999999
No 25
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=66.55 E-value=4.4 Score=28.84 Aligned_cols=49 Identities=18% Similarity=0.343 Sum_probs=39.1
Q ss_pred hhhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 215 QIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 215 ~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
..+..|...+.....++..+|...+ ..+.+.+-+.|..|.++|||.|..
T Consensus 20 ~~~~~il~~l~~~~~~s~~ela~~l------~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 20 PSDVRIYSLLLERGGMRVSEIAREL------DLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 3455566666666778888877764 788999999999999999999965
No 26
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=64.98 E-value=17 Score=27.02 Aligned_cols=56 Identities=9% Similarity=0.094 Sum_probs=48.4
Q ss_pred hhhhhhhhhhhhhccCCCCCHHHHHHHHHHhcC--CCCChHHHHHHHHhhhhcCceeec
Q psy8359 212 RQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLK--FPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 212 R~~~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~--F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
++..++.+|..++. ++.++--+|..++-+... +.++...+-..+..|-++|||++.
T Consensus 9 ~~g~l~~~IL~~L~-~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~ 66 (116)
T 3f8b_A 9 LRAQTNVILLNVLK-QGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSY 66 (116)
T ss_dssp HHHHHHHHHHHHHH-HCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhchHHHHHHHHHH-hCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 45668888888886 477888899999887765 899999999999999999999986
No 27
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=64.74 E-value=3.7 Score=31.55 Aligned_cols=52 Identities=10% Similarity=0.270 Sum_probs=36.9
Q ss_pred hhhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceee----cCCCCC
Q psy8359 215 QIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMER----DKDKAN 273 (279)
Q Consensus 215 ~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R----~~~d~~ 273 (279)
.-|..|...+ ....++..+|...+ ..+.+.+-+.|..|.++|||+| ++.|+.
T Consensus 38 ~~q~~iL~~l-~~~~~t~~eLa~~l------~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R 93 (151)
T 3kp7_A 38 AEQSHVLNML-SIEALTVGQITEKQ------GVNKAAVSRRVKKLLNAELVKLEKPDSNTDQR 93 (151)
T ss_dssp HHHHHHHHHH-HHSCBCHHHHHHHH------CSCSSHHHHHHHHHHHTTSEEC----------
T ss_pred HHHHHHHHHH-HcCCcCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCC
Confidence 3455566666 77888888877763 6778889999999999999998 656653
No 28
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=62.96 E-value=7.3 Score=30.79 Aligned_cols=47 Identities=21% Similarity=0.339 Sum_probs=42.2
Q ss_pred hhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeec
Q psy8359 216 IDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 216 I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
+|-.|.+++.....++..+|-.++ -.+.+.+.++|..|.+.|+|+|-
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~l------g~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKV------GLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHH------TCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeeec
Confidence 466789999999999999998884 79999999999999999999985
No 29
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=61.42 E-value=14 Score=28.29 Aligned_cols=47 Identities=9% Similarity=0.104 Sum_probs=34.7
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
|..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 46 ~~~iL~~l~~~~~~t~~ela~~------l~is~~tvs~~l~~Le~~Gli~r~~ 92 (154)
T 2eth_A 46 ELYAFLYVALFGPKKMKEIAEF------LSTTKSNVTNVVDSLEKRGLVVREM 92 (154)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHH------TTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 4444445545556777666555 5678999999999999999999953
No 30
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=60.63 E-value=9.9 Score=28.98 Aligned_cols=46 Identities=13% Similarity=0.191 Sum_probs=34.8
Q ss_pred hhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceee
Q psy8359 216 IDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMER 267 (279)
Q Consensus 216 I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R 267 (279)
-|..|...+.....++..+|...+ ..+.+.+-+.|..|.++|||+|
T Consensus 42 ~~~~iL~~l~~~~~~t~~eLa~~l------~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 42 QQLAMINVIYSTPGISVADLTKRL------IITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHHSTTEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEe
Confidence 344455555556667777766663 5688999999999999999999
No 31
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=60.01 E-value=10 Score=28.16 Aligned_cols=46 Identities=11% Similarity=0.329 Sum_probs=32.7
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeec
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
+..|...+.....++..+|... +..+.+.+-+.|..|.++|||.|.
T Consensus 35 ~~~iL~~l~~~~~~~~~ela~~------l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 35 QFGVIQVLAKSGKVSMSKLIEN------MGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHH------CSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHH------HCCChhHHHHHHHHHHHCCCeeec
Confidence 3444444445556666665544 566778899999999999999995
No 32
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=58.29 E-value=14 Score=26.49 Aligned_cols=36 Identities=8% Similarity=0.094 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeec
Q psy8359 227 RKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 227 ~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
...+...+|..+ ...+.+.+-++|..|.++|||+|-
T Consensus 34 ~~gi~qkeLa~~------~~l~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 34 NKGIWSRDVRYK------SNLPLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp TTCEEHHHHHHH------TTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCcCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEEe
Confidence 446666666666 578899999999999999999953
No 33
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=57.73 E-value=11 Score=28.40 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=33.7
Q ss_pred hhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 219 AIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 219 aIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
.|...+.... ++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 42 ~iL~~l~~~~-~t~~eLa~~------l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 42 HILMLLSEES-LTNSELARR------LNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHTTCC-CCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHhCC-CCHHHHHHH------HCCCHHHHHHHHHHHHHCCCeEecc
Confidence 3444555566 888887777 4688999999999999999999965
No 34
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=57.53 E-value=11 Score=27.34 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=38.5
Q ss_pred hhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCC
Q psy8359 216 IDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKA 272 (279)
Q Consensus 216 I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~ 272 (279)
.+..|.+.+ ....++..+|... +..+.+.+-+.+..|.+.|||+|..+.+
T Consensus 22 ~r~~IL~~L-~~~~~~~~ela~~------l~is~~tv~~~l~~L~~~gli~~~~~gr 71 (114)
T 2oqg_A 22 TRWEILTEL-GRADQSASSLATR------LPVSRQAIAKHLNALQACGLVESVKVGR 71 (114)
T ss_dssp HHHHHHHHH-HHSCBCHHHHHHH------SSSCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHHHH-HcCCCCHHHHHHH------HCcCHHHHHHHHHHHHHCCCeeEEecCC
Confidence 344556666 4567888877776 5789999999999999999999875433
No 35
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=57.09 E-value=17 Score=27.06 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=35.6
Q ss_pred hhhhhhhhhccCC--CCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 216 IDAAIVRIMKMRK--TLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 216 I~AaIVRIMK~~K--~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
-+..|...+.... .++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 35 ~~~~iL~~l~~~~~~~~~~~ela~~------l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 35 TQMTIIDYLSRNKNKEVLQRDLESE------FSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHH------HCCCcchHHHHHHHHHHCCCEEeeC
Confidence 3444555555554 6777777666 4678899999999999999999864
No 36
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=56.70 E-value=13 Score=28.57 Aligned_cols=47 Identities=17% Similarity=0.281 Sum_probs=39.4
Q ss_pred hhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeec
Q psy8359 216 IDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 216 I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
++-.|.+.+.....++..+|-.+ +-.+.+.+.+++..|.++|+|+|.
T Consensus 10 ~d~~il~~L~~~~~~s~~ela~~------lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 10 VDMQLVKILSENSRLTYRELADI------LNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHH------TTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEEE
Confidence 34457777788888999888877 578999999999999999999974
No 37
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=56.49 E-value=10 Score=28.60 Aligned_cols=47 Identities=6% Similarity=0.180 Sum_probs=33.3
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
|..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 39 ~~~iL~~l~~~~~~t~~eLa~~------l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 39 QWSVLEGIEANEPISQKEIALW------TKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCcCHHHHHHH------HCCCHhhHHHHHHHHHHCCCeeccC
Confidence 3334444444455666555554 4678999999999999999999865
No 38
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=56.28 E-value=17 Score=25.70 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=41.5
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCceEe
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNY 277 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~Y 277 (279)
...|++.+.. ..++..+|...+ ..+.+.+-+.+..|.+.|+|++..+.+..|-+
T Consensus 25 r~~Il~~L~~-~~~~~~ela~~l------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~ 78 (98)
T 3jth_A 25 RLQILCMLHN-QELSVGELCAKL------QLSQSALSQHLAWLRRDGLVTTRKEAQTVYYT 78 (98)
T ss_dssp HHHHHHHTTT-SCEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEECCTTCCEEE
T ss_pred HHHHHHHHhc-CCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEE
Confidence 3456666665 788888877774 67889999999999999999988766555533
No 39
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=55.84 E-value=9 Score=29.08 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=39.3
Q ss_pred hhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 216 IDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 216 I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
+|..|.+.+.....++..+|..++ ..+...+.+++..|.+.|+|+|..
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKL------GISETAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEeccc
Confidence 345567777777788998888874 679999999999999999998753
No 40
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=55.81 E-value=16 Score=27.05 Aligned_cols=46 Identities=13% Similarity=0.230 Sum_probs=34.2
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeec
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
|..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|.
T Consensus 36 ~~~iL~~l~~~~~~~~~~la~~------l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 36 QFKVLCSIRCAACITPVELKKV------LSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp HHHHHHHHHHHSSBCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHH------HCCChHHHHHHHHHHHHCCCEEec
Confidence 4445555555566777766644 467889999999999999999995
No 41
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=55.62 E-value=30 Score=25.70 Aligned_cols=47 Identities=13% Similarity=0.236 Sum_probs=36.1
Q ss_pred hhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 216 IDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 216 I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
.+..|...+. ...++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 38 ~~~~iL~~l~-~~~~~~~ela~~------l~~s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 38 LDFLVLRATS-DGPKTMAYLANR------YFVTQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp HHHHHHHHHT-TSCBCHHHHHHH------TTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHh-cCCcCHHHHHHH------hCCCchhHHHHHHHHHHCCCEEeec
Confidence 3445555555 677777777665 5778999999999999999999864
No 42
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=54.98 E-value=10 Score=28.49 Aligned_cols=49 Identities=8% Similarity=0.237 Sum_probs=34.9
Q ss_pred hhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCC
Q psy8359 216 IDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKD 270 (279)
Q Consensus 216 I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~ 270 (279)
-+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..+
T Consensus 38 ~~~~iL~~l~~~~~~~~~ela~~------l~~~~~tvs~~l~~L~~~gli~r~~~ 86 (142)
T 2bv6_A 38 PQFLVLTILWDESPVNVKKVVTE------LALDTGTVSPLLKRMEQVDLIKRERS 86 (142)
T ss_dssp HHHHHHHHHHHSSEEEHHHHHHH------TTCCTTTHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHcCCcCHHHHHHH------HCCChhhHHHHHHHHHHCCCEEeecC
Confidence 34445555555556666666555 45677789999999999999999653
No 43
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=54.52 E-value=15 Score=27.46 Aligned_cols=38 Identities=11% Similarity=0.244 Sum_probs=31.8
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 226 MRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 226 ~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
....++..+|... +..+.+.+-+.+..|.++|||+|..
T Consensus 38 ~~~~~t~~ela~~------l~~~~stvs~~l~~L~~~G~v~r~~ 75 (152)
T 1ku9_A 38 SDKPLTISDIMEE------LKISKGNVSMSLKKLEELGFVRKVW 75 (152)
T ss_dssp CSSCEEHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred cCCCCCHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3567888887777 4678899999999999999999973
No 44
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=53.88 E-value=13 Score=28.49 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=38.4
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeec
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
+-.|.+.+.....++..+|-..+ ..+.+.+.++|..|.++|+|+|.
T Consensus 7 d~~il~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 7 DLNIIEELKKDSRLSMRELGRKI------KLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 34567777777889998888874 68999999999999999999984
No 45
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=53.84 E-value=22 Score=27.03 Aligned_cols=50 Identities=6% Similarity=0.048 Sum_probs=39.4
Q ss_pred hhhhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 214 YQIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 214 ~~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
..-+..|..++.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 42 t~~~~~iL~~l~~~~~~t~~ela~~------l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 42 RVPEWRVLACLVDNDAMMITRLAKL------SLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp CHHHHHHHHHHSSCSCBCHHHHHHH------TTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEecc
Confidence 3445566666767777888777666 5688999999999999999999964
No 46
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=53.71 E-value=16 Score=27.32 Aligned_cols=47 Identities=9% Similarity=0.118 Sum_probs=34.6
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
+..|...+.....++..+|... +..+.+.+-+.|..|.++|||.|..
T Consensus 31 ~~~iL~~l~~~~~~t~~~la~~------l~~s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 31 QYLYLVRVCENPGIIQEKIAEL------IKVDRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCcCcCHHHHHHH------HCCCHhHHHHHHHHHHHCCCEEeec
Confidence 4444555555566666666655 4678999999999999999999964
No 47
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=53.45 E-value=13 Score=27.62 Aligned_cols=46 Identities=20% Similarity=0.144 Sum_probs=32.2
Q ss_pred hhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 218 AAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 218 AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 41 ~~iL~~l~~~~~~t~~ela~~------l~~~~~tvs~~l~~L~~~glv~r~~ 86 (140)
T 2nnn_A 41 WAALVRLGETGPCPQNQLGRL------TAMDAATIKGVVERLDKRGLIQRSA 86 (140)
T ss_dssp HHHHHHHHHHSSBCHHHHHHH------TTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 333444434445555555444 6788999999999999999999963
No 48
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=53.41 E-value=9.9 Score=28.67 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=38.2
Q ss_pred hhhhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 214 YQIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 214 ~~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
..-|..|..++-....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 35 t~~q~~vL~~l~~~~~~t~~eLa~~------l~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 35 TYTGYIVLMAIENDEKLNIKKLGER------VFLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp CHHHHHHHHHSCTTCEEEHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHHHHHHHHHHHcCCcCHHHHHHH------HCCChhhHHHHHHHHHHCCCeEecC
Confidence 3445555666666677777777666 4678999999999999999999974
No 49
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=53.19 E-value=13 Score=29.13 Aligned_cols=46 Identities=17% Similarity=0.327 Sum_probs=38.3
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeec
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
+-.|.+.+.....++..+|...+ ..+...+.++|..|.++|+|+|.
T Consensus 12 ~~~il~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 12 DIKILQVLQENGRLTNVELSERV------ALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEeee
Confidence 34567777777889999888874 67899999999999999999974
No 50
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=52.99 E-value=12 Score=28.01 Aligned_cols=45 Identities=13% Similarity=0.271 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeec--CCCC-CceEec
Q psy8359 228 KTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERD--KDKA-NSYNYM 278 (279)
Q Consensus 228 K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~--~~d~-~~y~Yv 278 (279)
..++..+|... +..+.+.+-+.|..|.++|||+|. +.|+ ..+.++
T Consensus 52 ~~~t~~eLa~~------l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~L 99 (127)
T 2frh_A 52 KEYYLKDIINH------LNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILV 99 (127)
T ss_dssp SEEEHHHHHHH------SSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEEC
T ss_pred CCcCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEE
Confidence 45555555544 667889999999999999999994 4443 344443
No 51
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=52.96 E-value=7.8 Score=29.52 Aligned_cols=25 Identities=12% Similarity=0.332 Sum_probs=22.4
Q ss_pred CCCChHHHHHHHHhhhhcCceeecC
Q psy8359 245 FPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 245 F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
...+...|.++|..|+++|||.|..
T Consensus 61 l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 61 MTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp SSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 5678999999999999999999964
No 52
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=52.88 E-value=15 Score=28.23 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=35.0
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 54 ~~~iL~~l~~~~~~t~~ela~~------l~is~~tvs~~l~~Le~~Gli~r~~ 100 (162)
T 3cjn_A 54 KMRALAILSAKDGLPIGTLGIF------AVVEQSTLSRALDGLQADGLVRREV 100 (162)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHH------HCCChhHHHHHHHHHHHCCCEEecC
Confidence 4445555555566676666655 4678999999999999999999964
No 53
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=52.49 E-value=15 Score=27.62 Aligned_cols=49 Identities=6% Similarity=0.085 Sum_probs=37.4
Q ss_pred hhhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 215 QIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 215 ~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
.-|..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 31 ~~q~~iL~~l~~~~~~t~~eLa~~------l~~~~~tvs~~l~~Le~~Glv~r~~ 79 (145)
T 3g3z_A 31 YNLFAVLYTLATEGSRTQKHIGEK------WSLPKQTVSGVCKTLAGQGLIEWQE 79 (145)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEeecc
Confidence 345555666656666777777665 4678899999999999999999964
No 54
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=52.08 E-value=11 Score=26.33 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=35.1
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
+-.|...+.....++..+|... +..+.+.+-+.+..|.+.|||+|..
T Consensus 18 ~~~iL~~L~~~~~~~~~ela~~------l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 18 RLGIMIFLLPRRKAPFSQIQKV------LDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHH------TTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhcCCcCHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3344554544566777777666 5788999999999999999999743
No 55
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=51.70 E-value=14 Score=28.88 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=33.3
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeec
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
|..|...+.....++..+|... +..+.+.+-+.|..|.++|||.|.
T Consensus 47 ~~~iL~~L~~~~~~t~~eLa~~------l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 47 QFRTLVILSNHGPINLATLATL------LGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHH------HTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH------hCCCHHHHHHHHHHHHHCCCEEec
Confidence 3444444444555666655555 467899999999999999999994
No 56
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=51.59 E-value=12 Score=27.77 Aligned_cols=48 Identities=15% Similarity=0.309 Sum_probs=36.6
Q ss_pred hhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 216 IDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 216 I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
-+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 30 ~~~~iL~~l~~~~~~~~~ela~~------l~~s~~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 30 AQVACLLRIHREPGIKQDELATF------FHVDKGTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp HHHHHHHHHHHSTTCBHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEeec
Confidence 34455555555677777777666 3678999999999999999999953
No 57
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=51.47 E-value=13 Score=28.69 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=37.3
Q ss_pred hhhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 215 QIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 215 ~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
.-|..|..++.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 50 ~~q~~vL~~l~~~~~~t~~eLa~~------l~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 50 SGQFPFLMRLYREDGINQESLSDY------LKIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp TTTHHHHHHHHHSCSEEHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEEec
Confidence 345555666666677777776665 4678999999999999999999864
No 58
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=51.32 E-value=18 Score=26.96 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=37.5
Q ss_pred hhhhhhhhh-ccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 216 IDAAIVRIM-KMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 216 I~AaIVRIM-K~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
-+..|...+ .....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 38 ~~~~iL~~l~~~~~~~t~~~la~~------l~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 38 ARWLVLLHLARHRDSPTQRELAQS------VGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp THHHHHHHHHHCSSCCBHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHH------hCCChhhHHHHHHHHHHCCCeeecC
Confidence 445555666 66677888777766 4678999999999999999999964
No 59
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=50.68 E-value=13 Score=28.47 Aligned_cols=48 Identities=10% Similarity=0.291 Sum_probs=35.8
Q ss_pred hhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 216 IDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 216 I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
-|..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 50 ~~~~iL~~l~~~~~~t~~ela~~------l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 50 PEWRVITILALYPGSSASEVSDR------TAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHHhCCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEeeec
Confidence 34555566666677787777665 3578899999999999999999964
No 60
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=50.54 E-value=15 Score=28.38 Aligned_cols=47 Identities=15% Similarity=0.255 Sum_probs=39.5
Q ss_pred hhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeec
Q psy8359 216 IDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 216 I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
++..|.+.+.....++..+|-.++ -.+...+.++|..|.+.|+|+|.
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQF------GVSPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHH------TSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHcCCcceE
Confidence 344577777778889999888874 68999999999999999999983
No 61
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=50.09 E-value=15 Score=28.37 Aligned_cols=50 Identities=16% Similarity=0.279 Sum_probs=38.6
Q ss_pred hhhhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 214 YQIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 214 ~~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
..-|..|..++.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 45 t~~q~~iL~~l~~~~~~t~~eLa~~------l~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 45 SLPQFTALSVLAAKPNLSNAKLAER------SFIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHH------HTSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCcCeEecC
Confidence 3445566666666777888777666 4678888999999999999999864
No 62
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=50.05 E-value=16 Score=28.03 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=39.6
Q ss_pred hhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeec
Q psy8359 216 IDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 216 I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
++-.|.+.+.....++..+|-..+ ..+...+.++|..|.+.|+|+|.
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREI------RIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHH------TSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCcEEEE
Confidence 345577778888889999888874 68999999999999999999984
No 63
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=49.59 E-value=40 Score=24.31 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=37.8
Q ss_pred hhhhhccCCCCCHHHHHHHHHHhcCC-CCChHHHHHHHHhhhhcCceeecC--CCCCceEe
Q psy8359 220 IVRIMKMRKTLSHNLLLSELFNQLKF-PVKPADLKKRIESLIDRDYMERDK--DKANSYNY 277 (279)
Q Consensus 220 IVRIMK~~K~l~~~~L~~eV~~~l~F-~p~~~~iK~~Ie~LIekeYi~R~~--~d~~~y~Y 277 (279)
|.+.+. ...++..+|... . ..+.+.+-+.+..|.++|||+|.. .|+....|
T Consensus 19 IL~~L~-~~~~~~~eLa~~------l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y 72 (107)
T 2hzt_A 19 ILXHLT-HGKKRTSELKRL------MPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEY 72 (107)
T ss_dssp HHHHHT-TCCBCHHHHHHH------CTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHH-hCCCCHHHHHHH------hcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEE
Confidence 444444 567888888776 5 679999999999999999999864 34444433
No 64
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=49.38 E-value=20 Score=26.93 Aligned_cols=45 Identities=7% Similarity=0.082 Sum_probs=31.8
Q ss_pred hhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 219 AIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 219 aIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
.|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 46 ~iL~~l~~~~~~t~~ela~~------l~~~~~tvs~~l~~Le~~Glv~r~~ 90 (150)
T 2rdp_A 46 VALQWLLEEGDLTVGELSNK------MYLACSTTTDLVDRMERNGLVARVR 90 (150)
T ss_dssp HHHHHHHHHCSBCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHH------HCCCchhHHHHHHHHHHCCCeeecC
Confidence 33344434445555555544 4678999999999999999999963
No 65
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=49.10 E-value=16 Score=29.61 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=35.9
Q ss_pred hhhhhhhhhhhhccCC-CCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCC
Q psy8359 213 QYQIDAAIVRIMKMRK-TLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKAN 273 (279)
Q Consensus 213 ~~~I~AaIVRIMK~~K-~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~ 273 (279)
...|=.+|...++.+. ..+..+|... |-.+.+-+.+.+..|-++|||.|+...+.
T Consensus 7 q~~il~~I~~~~~~~g~~~s~~eia~~------lgl~~~tv~~~l~~Le~~G~i~~~~~~~r 62 (196)
T 3k2z_A 7 QRKVLLFIEEFIEKNGYPPSVREIARR------FRITPRGALLHLIALEKKGYIERKNGKPR 62 (196)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHH------HTSCHHHHHHHHHHHHHTTSEECC---TT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHH------cCCCcHHHHHHHHHHHHCCCEEecCCCcc
Confidence 3344455555555543 6777777666 34445569999999999999999876543
No 66
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=48.94 E-value=19 Score=26.71 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=37.0
Q ss_pred hhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCC
Q psy8359 216 IDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKD 270 (279)
Q Consensus 216 I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~ 270 (279)
.+..|...+.....++..+|... +..+.+.+-+.|..|.++|||.|..+
T Consensus 32 ~~~~iL~~l~~~~~~~~~ela~~------l~is~~~vs~~l~~L~~~gli~~~~~ 80 (142)
T 3bdd_A 32 TRYSILQTLLKDAPLHQLALQER------LQIDRAAVTRHLKLLEESGYIIRKRN 80 (142)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEecCC
Confidence 34445555555667777777665 46789999999999999999998753
No 67
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=48.47 E-value=11 Score=26.61 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=34.6
Q ss_pred ccCC-CCCHHHHHHHHHHhcCCCCChHH-HHHHHHhhhhcCceeecCCCCCc
Q psy8359 225 KMRK-TLSHNLLLSELFNQLKFPVKPAD-LKKRIESLIDRDYMERDKDKANS 274 (279)
Q Consensus 225 K~~K-~l~~~~L~~eV~~~l~F~p~~~~-iK~~Ie~LIekeYi~R~~~d~~~ 274 (279)
.... .++..+|... +..+.+. +-+.|..|.++|||++++.|+..
T Consensus 25 ~~~~~~~t~~eLa~~------l~is~~t~vs~~l~~Le~~Glv~~~~~drR~ 70 (95)
T 2pg4_A 25 EKKGYEPSLAEIVKA------SGVSEKTFFMGLKDRLIRAGLVKEETLSYRV 70 (95)
T ss_dssp HHTTCCCCHHHHHHH------HCCCHHHHHTTHHHHHHHTTSEEEEEEETTE
T ss_pred HhcCCCCCHHHHHHH------HCCCchHHHHHHHHHHHHCCCeecCCCCCCe
Confidence 3444 6888877776 4678888 99999999999999988777543
No 68
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=48.44 E-value=17 Score=27.91 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=39.0
Q ss_pred hhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeec
Q psy8359 216 IDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 216 I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
++..|.+.+.....++..+|-..+ -.+.+.+.++|..|.+.|+|+|.
T Consensus 8 ~~~~iL~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 8 IDRILVRELAADGRATLSELATRA------GLSVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 345667777777889999888874 67899999999999999999874
No 69
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=48.24 E-value=15 Score=27.99 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=33.6
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 49 ~~~iL~~l~~~~~~t~~ela~~------l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 49 QYLVMLVLWETDERSVSEIGER------LYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhCCCcCHHHHHHH------hCCCcccHHHHHHHHHHCCCEeecC
Confidence 3334444444555666655554 4678999999999999999999964
No 70
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=47.92 E-value=12 Score=28.53 Aligned_cols=49 Identities=8% Similarity=0.144 Sum_probs=35.2
Q ss_pred hhhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 215 QIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 215 ~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
.-|..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 41 ~~q~~iL~~l~~~~~~~~~eLa~~------l~~~~~~vs~~l~~L~~~Glv~r~~ 89 (149)
T 4hbl_A 41 YSQYLVMLTLWEENPQTLNSIGRH------LDLSSNTLTPMLKRLEQSGWVKRER 89 (149)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHH------HTCCHHHHHHHHHHHHHHTSEEC--
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEeeCC
Confidence 344555555555666666666655 4678999999999999999999964
No 71
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=47.55 E-value=19 Score=26.22 Aligned_cols=54 Identities=9% Similarity=0.073 Sum_probs=41.7
Q ss_pred hhhhhhhhccCCCC-CHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCC-CCCceE
Q psy8359 217 DAAIVRIMKMRKTL-SHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKD-KANSYN 276 (279)
Q Consensus 217 ~AaIVRIMK~~K~l-~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~-d~~~y~ 276 (279)
...|+..++....+ +..+|..+ |..+..-|.+++..|.+.|+|++..+ ...+|+
T Consensus 30 ~~~I~~~l~~g~~lps~~eLa~~------lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V 85 (102)
T 2b0l_A 30 IEHIFEELDGNEGLLVASKIADR------VGITRSVIVNALRKLESAGVIESRSLGMKGTYI 85 (102)
T ss_dssp HHHHTTSSBTTEEEECHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEE
T ss_pred HHHHHhhhcCCCcCCCHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEE
Confidence 44455667766666 88888877 78999999999999999999998763 234444
No 72
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=47.52 E-value=18 Score=28.88 Aligned_cols=47 Identities=28% Similarity=0.406 Sum_probs=39.6
Q ss_pred hhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeec
Q psy8359 216 IDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 216 I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
++-.|.+.+.....++..+|-..+ -.+.+.+.++|..|.++|+|+|.
T Consensus 18 ~d~~IL~~L~~~~~~s~~eLA~~l------glS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 18 LDRNILRLLKKDARLTISELSEQL------KKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEee
Confidence 344577778888889999888884 78999999999999999999874
No 73
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=47.35 E-value=31 Score=25.70 Aligned_cols=45 Identities=9% Similarity=0.147 Sum_probs=34.1
Q ss_pred hhhhhhcc-CCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 219 AIVRIMKM-RKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 219 aIVRIMK~-~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
.|...+.. ...++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 39 ~iL~~l~~~~~~~~~~~la~~------l~i~~~~vs~~l~~Le~~glv~r~~ 84 (147)
T 2hr3_A 39 VVLGAIDRLGGDVTPSELAAA------ERMRSSNLAALLRELERGGLIVRHA 84 (147)
T ss_dssp HHHHHHHHTTSCBCHHHHHHH------TTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHcCCCCCHHHHHHH------hCCChhhHHHHHHHHHHCCCEeeCC
Confidence 33444444 566777766665 5789999999999999999999974
No 74
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=47.25 E-value=20 Score=26.98 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=34.6
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~------l~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 42 QRAILEGLSLTPGATAPQLGAA------LQMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhCCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCeeecC
Confidence 4444555555556666666655 4678899999999999999999964
No 75
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=46.36 E-value=26 Score=27.03 Aligned_cols=50 Identities=18% Similarity=0.164 Sum_probs=38.4
Q ss_pred hhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCC--CCCceEe
Q psy8359 220 IVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKD--KANSYNY 277 (279)
Q Consensus 220 IVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~--d~~~y~Y 277 (279)
|++.+. ...++..+|...+ ..+...+-+++..|.+.|+|+|... |+ ...|
T Consensus 29 IL~~L~-~g~~~~~eLa~~l------gis~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y 80 (146)
T 2f2e_A 29 IVRDAF-EGLTRFGEFQKSL------GLAKNILAARLRNLVEHGVMVAVPAESGS-HQEY 80 (146)
T ss_dssp HHHHHH-TTCCSHHHHHHHH------CCCHHHHHHHHHHHHHTTSEEEEECSSSS-CEEE
T ss_pred HHHHHH-hCCCCHHHHHHHh------CCCHHHHHHHHHHHHHCCCEEEEecCCCC-eEEE
Confidence 455553 5678888887763 6889999999999999999999653 55 5555
No 76
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=46.07 E-value=16 Score=29.20 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=40.1
Q ss_pred hhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeec
Q psy8359 216 IDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 216 I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
++-.|.+.+.....++..+|-.++ ..+.+.+.++|..|.+.|+|+|.
T Consensus 28 ~d~~IL~~L~~~~~~s~~eLA~~l------glS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 28 IDKKIIKILQNDGKAPLREISKIT------GLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEee
Confidence 445677788888899999888884 68999999999999999999984
No 77
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=45.95 E-value=14 Score=28.25 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=33.5
Q ss_pred hhhhhhhhh-ccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 216 IDAAIVRIM-KMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 216 I~AaIVRIM-K~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
-|..|..++ .....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~------l~i~~~tvs~~l~~Le~~Gli~r~~ 96 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGA------LKVTNGNVSGLVNRLIKDGMVVKAM 96 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHH------CSSCCSCHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHH------HCCChhhHHHHHHHHHHCCCEEeec
Confidence 344555555 44556666655554 5667788899999999999999964
No 78
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=45.76 E-value=14 Score=27.84 Aligned_cols=50 Identities=16% Similarity=0.313 Sum_probs=33.7
Q ss_pred hhhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCC
Q psy8359 215 QIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKD 270 (279)
Q Consensus 215 ~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~ 270 (279)
.-|..|...+-....++..+|... +..+.+.+-+.|..|.++|||+|..+
T Consensus 37 ~~~~~vL~~l~~~~~~t~~eLa~~------l~~~~~tvs~~l~~L~~~Glv~r~~~ 86 (142)
T 3ech_A 37 PPDVHVLKLIDEQRGLNLQDLGRQ------MCRDKALITRKIRELEGRNLVRRERN 86 (142)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHH------HC---CHHHHHHHHHHHTTSEEC---
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHH------hCCCHHHHHHHHHHHHHCCCEeeccC
Confidence 345555666666677777777666 35677889999999999999999643
No 79
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=44.55 E-value=21 Score=26.86 Aligned_cols=47 Identities=13% Similarity=0.275 Sum_probs=34.3
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
|..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~------l~~~~~tvs~~l~~Le~~Glv~r~~ 88 (148)
T 3nrv_A 42 EWRIISVLSSASDCSVQKISDI------LGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
T ss_dssp HHHHHHHHHHSSSBCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHcCCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEeec
Confidence 4444555555667777776665 4678899999999999999999874
No 80
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=44.54 E-value=31 Score=26.83 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=46.7
Q ss_pred hhhhhhhhhhhhccCCCCCHHHHHHHHHHhcC--CCCChHHHHHHHHhhhhcCceeecC
Q psy8359 213 QYQIDAAIVRIMKMRKTLSHNLLLSELFNQLK--FPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 213 ~~~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~--F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
...++.+|..++.. +.++-.+|..++-+... +.++...+-..+..|.++|||+|..
T Consensus 39 ~g~~~~~IL~~L~~-~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~ 96 (145)
T 1xma_A 39 RGYVDTIILSLLIE-GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYY 96 (145)
T ss_dssp GGTHHHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCcHHHHHHHHHHh-CCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEE
Confidence 34577888888854 67888899988877766 7899999999999999999999863
No 81
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=44.46 E-value=20 Score=25.18 Aligned_cols=44 Identities=16% Similarity=0.388 Sum_probs=34.9
Q ss_pred hhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCC
Q psy8359 221 VRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKD 270 (279)
Q Consensus 221 VRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~ 270 (279)
..+......++..+|... +..+.+.+-+.+..|.++|||+|..+
T Consensus 28 ~~l~~~~~~~t~~ela~~------l~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 28 LKMVEIEKPITSEELADI------FKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp HHHHHHCSCEEHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHcCCCCCHHHHHHH------HCcCHHHHHHHHHHHHHCCCeEeecc
Confidence 344444677888877776 57889999999999999999999754
No 82
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=44.42 E-value=24 Score=27.36 Aligned_cols=52 Identities=8% Similarity=0.091 Sum_probs=38.7
Q ss_pred hhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCC
Q psy8359 219 AIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDK 271 (279)
Q Consensus 219 aIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d 271 (279)
+|.+++....-++.++|...+.+.. ...+.+.|=+.++.|.+.|.|.|-..+
T Consensus 23 ~Il~~l~~~~h~ta~ei~~~l~~~~-~~is~~TVYR~L~~L~e~Glv~~i~~~ 74 (145)
T 3eyy_A 23 LVLEAVDTLEHATPDDILGEVRKTA-SGINISTVYRTLELLEELGLVSHAHLG 74 (145)
T ss_dssp HHHHHHHHHSSBCHHHHHHHHHTTC-TTCCHHHHHHHHHHHHHHTSEEEEECG
T ss_pred HHHHHHHhcCCCCHHHHHHHHHhhC-CCCCHhHHHHHHHHHHHCCcEEEEEeC
Confidence 3444444444788888888775443 457899999999999999999996543
No 83
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=44.13 E-value=20 Score=28.00 Aligned_cols=47 Identities=13% Similarity=0.206 Sum_probs=33.4
Q ss_pred hhhhhhhhcc-CCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 217 DAAIVRIMKM-RKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 217 ~AaIVRIMK~-~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
|..|...+.. ...++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~------l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKA------IGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHH------HTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH------HCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 4444444443 455666666555 4678999999999999999999975
No 84
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=44.11 E-value=51 Score=23.75 Aligned_cols=54 Identities=7% Similarity=0.146 Sum_probs=39.4
Q ss_pred hhhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCce
Q psy8359 215 QIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSY 275 (279)
Q Consensus 215 ~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y 275 (279)
.....|+..+.. +.++..+|... +..+.+.+-+.+..|.+.|+|++..+.+..|
T Consensus 25 ~~r~~IL~~L~~-~~~s~~eLa~~------lgis~stvs~~L~~L~~~GlV~~~~~gr~~~ 78 (108)
T 2kko_A 25 GRRLQILDLLAQ-GERAVEAIATA------TGMNLTTASANLQALKSGGLVEARREGTRQY 78 (108)
T ss_dssp STTHHHHHHHTT-CCEEHHHHHHH------HTCCHHHHHHHHHHHHHHTSEEEEEETTEEE
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHH------HCcCHHHHHHHHHHHHHCCCeEEEEeCCEEE
Confidence 334455666653 67788877766 4678999999999999999999876444333
No 85
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=43.60 E-value=40 Score=24.21 Aligned_cols=52 Identities=13% Similarity=0.287 Sum_probs=38.1
Q ss_pred hhhhhhccCCCCCHHHHHHHHHHhcCCC-CChHHHHHHHHhhhhcCceeecC--CCCCceEe
Q psy8359 219 AIVRIMKMRKTLSHNLLLSELFNQLKFP-VKPADLKKRIESLIDRDYMERDK--DKANSYNY 277 (279)
Q Consensus 219 aIVRIMK~~K~l~~~~L~~eV~~~l~F~-p~~~~iK~~Ie~LIekeYi~R~~--~d~~~y~Y 277 (279)
.|...+. ...++..+|... .. .+...+-+.+..|.++|+|+|.. .|+....|
T Consensus 29 ~IL~~L~-~~~~~~~eL~~~------l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y 83 (107)
T 2fsw_A 29 LIIFQIN-RRIIRYGELKRA------IPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEY 83 (107)
T ss_dssp HHHHHHT-TSCEEHHHHHHH------STTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHHH-hCCcCHHHHHHH------cccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEE
Confidence 3445554 567888887766 44 79999999999999999999864 34444443
No 86
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=43.03 E-value=19 Score=27.78 Aligned_cols=46 Identities=13% Similarity=0.214 Sum_probs=38.5
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeec
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
+-.|.+.+.....++..+|-.++ ..+.+.+.++|..|.+.|+|+|.
T Consensus 9 ~~~il~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 9 DKKIIKILQNDGKAPLREISKIT------GLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH------CSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 34567777777889999888874 78999999999999999999984
No 87
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=42.69 E-value=41 Score=23.76 Aligned_cols=48 Identities=8% Similarity=0.163 Sum_probs=38.0
Q ss_pred hhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCc
Q psy8359 220 IVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANS 274 (279)
Q Consensus 220 IVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~ 274 (279)
|..+++... ++..+|-.+ +-.+...|.++|..|-+.|+|.+..+.|-.
T Consensus 22 IL~lL~~~g-~sa~eLAk~------LgiSk~aVr~~L~~Le~eG~I~~~~~~PP~ 69 (82)
T 1oyi_A 22 AIKTIGIEG-ATAAQLTRQ------LNMEKREVNKALYDLQRSAMVYSSDDIPPR 69 (82)
T ss_dssp HHHHHSSST-EEHHHHHHH------SSSCHHHHHHHHHHHHHHTSSEECSSSSCE
T ss_pred HHHHHHHcC-CCHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEeCCCCCCc
Confidence 455677555 777766666 678999999999999999999998776543
No 88
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=42.15 E-value=19 Score=27.69 Aligned_cols=47 Identities=11% Similarity=0.165 Sum_probs=34.5
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
|..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 55 q~~vL~~l~~~~~~t~~eLa~~------l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 55 KLRLLSSLSAYGELTVGQLATL------GVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHH------TTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHhCCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 4444445544556666665554 6788999999999999999999974
No 89
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=41.28 E-value=27 Score=25.97 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=37.0
Q ss_pred hhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCce
Q psy8359 219 AIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSY 275 (279)
Q Consensus 219 aIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y 275 (279)
.|.+.+...+.++..+|... +..+.+.+-+.|..|.+.|+|.+..+.+..|
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~------l~is~stvs~~L~~L~~~Glv~~~~~gr~~~ 96 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANI------LGVTIANASHHLRTLYKQGVVNFRKEGKLAL 96 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEC----CCE
T ss_pred HHHHHHHHCCCcCHHHHHHH------HCcCHHHHHHHHHHHHHCCCeEEEEECCEEE
Confidence 46666665677888777766 4678899999999999999999876555444
No 90
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=41.05 E-value=30 Score=22.36 Aligned_cols=45 Identities=11% Similarity=0.199 Sum_probs=34.8
Q ss_pred HHHHhHhcCCCCCChHHHHHHHHHHHHhcCCchhHhHHHHHhhHH
Q psy8359 63 VDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTSKLEGMFKDME 107 (279)
Q Consensus 63 ~~LakRLL~~~s~s~~~E~~~I~~Lk~~cG~~~t~kle~M~~D~~ 107 (279)
+-+.+|++.......+.-..|++-|+..-|..--..+-+|+.-+-
T Consensus 4 rsViRSvikSS~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~ 48 (56)
T 1oks_A 4 RSVIRSIIKSSRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKII 48 (56)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHccccchHHHHHHHHHHHH
Confidence 346788888777788888889988888888777777777776554
No 91
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=40.12 E-value=22 Score=26.41 Aligned_cols=48 Identities=8% Similarity=0.099 Sum_probs=35.0
Q ss_pred hhhhhhhhhccCC--CCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 216 IDAAIVRIMKMRK--TLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 216 I~AaIVRIMK~~K--~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
-|..|...+-... .++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~------l~~~~~tvs~~l~~Le~~Gli~r~~ 81 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKA------LQRTGPTVSNLLRNLERKKLIYRYV 81 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHH------hCCCcccHHHHHHHHHHCCCEeecC
Confidence 3444455544443 6777766665 4678899999999999999999864
No 92
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=39.83 E-value=1.7e+02 Score=27.70 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=69.2
Q ss_pred CCCCCHHHHHHHHhHhhcCCceeeeeCCCCCCCCCCCeEEEecCCCCceeeEEeeccccccchHHHHHHHHHHHhhhhhh
Q psy8359 136 GIDLTDADLRRTLQSLACGKTRVLKKTPASRDIEDCDRFRFNNDFTFKLFRIKINQIQMKETNEEQKATEERVFQDRQYQ 215 (279)
Q Consensus 136 ~t~i~~~~l~~~L~sL~~~k~~iL~~~~~~~~i~~~~~f~~N~~F~~k~~ki~i~~~~~k~~~~e~~~~~~~i~~~R~~~ 215 (279)
...++.+.+.++|.-|+.+..+++.+.+++ .+..|.+|..- ... .-....-+.+...|--.
T Consensus 300 ~~~l~~~~l~~~L~lL~~~~~~fv~~~g~~----g~g~y~V~~~~-----------~~~----~lr~~~ie~ii~~~~G~ 360 (534)
T 2xub_A 300 GYNISKQVLDQYLTLLADDPLEFVGKSGDS----GGGMYVINLHK-----------ALA----SLATATLESVVQERFGS 360 (534)
T ss_dssp TCCCCHHHHHHHHHHHHSCTTCCEEECCCC----SSCEEEEBHHH-----------HHH----HHHHHHHHHHHHHHHCH
T ss_pred cccccHHHHHHHHHHHhCCcHHhhhccccC----CCceEEEeHHH-----------HHH----HHHHHHHHHHHHHHhCh
Confidence 356788999999999997777788775431 35677776531 000 00111223344444444
Q ss_pred hhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeec
Q psy8359 216 IDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 216 I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
.=+-|+|+|..++.++-.+|-..+ .....++++.+=.|.+.||+.-.
T Consensus 361 ~a~RI~r~L~~~~~l~d~~ia~~a------~i~~k~vR~~Ly~L~~~g~v~~q 407 (534)
T 2xub_A 361 RCARIFRLVLQKKHIEQKQVEDFA------MIPAKEAKDMLYKMLSENFMSLQ 407 (534)
T ss_dssp HHHHHHHHHHHC---CHHHHHHHH------CSCHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHh------CCCHHHHHHHHHHHHHCCCeEEE
Confidence 334489999998889888887775 56778999999999999998654
No 93
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=39.03 E-value=63 Score=20.44 Aligned_cols=53 Identities=19% Similarity=0.342 Sum_probs=37.3
Q ss_pred hhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCceEe
Q psy8359 220 IVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNY 277 (279)
Q Consensus 220 IVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~Y 277 (279)
|..+++..+.++..+|...+.+. ....+...|-+.++ +-|.+ +-..+...+.|
T Consensus 10 i~~ll~~~~~~t~~el~~~l~~~-~~~vs~~Tv~R~L~---~lg~v-~~~~~~~~~~Y 62 (64)
T 2p5k_A 10 IREIITSNEIETQDELVDMLKQD-GYKVTQATVSRDIK---ELHLV-KVPTNNGSYKY 62 (64)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHT-TCCCCHHHHHHHHH---HHTCE-EEEETTTEEEE
T ss_pred HHHHHHcCCCCCHHHHHHHHHHh-CCCcCHHHHHHHHH---HcCCE-EEecCCCceee
Confidence 34456678899999999887543 25788899999988 55788 54434455666
No 94
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=38.77 E-value=61 Score=23.10 Aligned_cols=50 Identities=6% Similarity=0.153 Sum_probs=37.4
Q ss_pred hhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCC
Q psy8359 216 IDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKA 272 (279)
Q Consensus 216 I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~ 272 (279)
....|+..+. ...++..+|... +..+.+.+-+.+..|.+.|+|.+..+.+
T Consensus 27 ~r~~IL~~L~-~~~~~~~ela~~------l~is~stvs~~L~~L~~~Glv~~~~~gr 76 (106)
T 1r1u_A 27 NRIRIMELLS-VSEASVGHISHQ------LNLSQSNVSHQLKLLKSVHLVKAKRQGQ 76 (106)
T ss_dssp HHHHHHHHHH-HCCBCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHHHHH-hCCCCHHHHHHH------HCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3445555555 566788877766 3678899999999999999999876443
No 95
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=38.31 E-value=18 Score=26.76 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=34.4
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 38 ~~~iL~~l~~~~~~t~~ela~~------l~~s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 38 QWRVIRILRQQGEMESYQLANQ------ACILRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHH------TTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH------HCCCHhHHHHHHHHHHHCCCEEeec
Confidence 4444445544555666665554 6788999999999999999999964
No 96
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=37.86 E-value=34 Score=25.47 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=37.8
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCC--CCChHHHHHHHHhhhhcCceeecC
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKF--PVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F--~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
+-.|...++....++..+|-.. + ..+.+.|.+++..|-+.|+|++..
T Consensus 15 d~~IL~~L~~~g~~s~~eLA~~------l~~giS~~aVs~rL~~Le~~GLV~~~~ 63 (111)
T 3b73_A 15 DDRILEIIHEEGNGSPKELEDR------DEIRISKSSVSRRLKKLADHDLLQPLA 63 (111)
T ss_dssp HHHHHHHHHHHSCBCHHHHHTS------TTCCSCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHHHcCCCCHHHHHHH------HhcCCCHHHHHHHHHHHHHCCCEEecC
Confidence 4456677777778888766554 6 789999999999999999999863
No 97
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=37.71 E-value=75 Score=23.96 Aligned_cols=52 Identities=12% Similarity=0.129 Sum_probs=40.1
Q ss_pred hhhhhhhcc-C-CCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCC
Q psy8359 218 AAIVRIMKM-R-KTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKD 270 (279)
Q Consensus 218 AaIVRIMK~-~-K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~ 270 (279)
.+|..++.. . +-++.++|...+.+.. -..+.+.|=+.++.|.+.|+|.|-..
T Consensus 21 ~~Il~~L~~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv~~~~~ 74 (136)
T 1mzb_A 21 VKILQMLDSAEQRHMSAEDVYKALMEAG-EDVGLATVYRVLTQFEAAGLVVRHNF 74 (136)
T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTSEEEECS
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 445555554 4 6799999998876653 35789999999999999999999764
No 98
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=37.68 E-value=47 Score=23.42 Aligned_cols=51 Identities=12% Similarity=0.203 Sum_probs=37.7
Q ss_pred hhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCce
Q psy8359 218 AAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSY 275 (279)
Q Consensus 218 AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y 275 (279)
..|++.+. ...++..+|...+ ..+.+.+-+.+..|.+.|+|.+..+.+..|
T Consensus 26 ~~Il~~L~-~~~~~~~ela~~l------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~ 76 (102)
T 3pqk_A 26 LMLVCTLV-EGEFSVGELEQQI------GIGQPTLSQQLGVLRESGIVETRRNIKQIF 76 (102)
T ss_dssp HHHHHHHH-TCCBCHHHHHHHH------TCCTTHHHHHHHHHHHTTSEEEECSSSCCE
T ss_pred HHHHHHHH-hCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEE
Confidence 34566664 3668888877774 567778999999999999999876554444
No 99
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=37.08 E-value=22 Score=26.65 Aligned_cols=26 Identities=8% Similarity=0.272 Sum_probs=23.2
Q ss_pred CCCChHHHHHHHHhhhhcCceeecCC
Q psy8359 245 FPVKPADLKKRIESLIDRDYMERDKD 270 (279)
Q Consensus 245 F~p~~~~iK~~Ie~LIekeYi~R~~~ 270 (279)
+..+.+.+-+.|..|.++|||+|..+
T Consensus 64 l~~~~~tvs~~l~~L~~~glv~r~~~ 89 (147)
T 1z91_A 64 LYLDSGTLTPMLKRMEQQGLITRKRS 89 (147)
T ss_dssp TTCCHHHHHHHHHHHHHHTSEECCBC
T ss_pred HCCCcCcHHHHHHHHHHCCCEEeccC
Confidence 67889999999999999999999643
No 100
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=36.68 E-value=43 Score=28.28 Aligned_cols=51 Identities=14% Similarity=0.296 Sum_probs=40.4
Q ss_pred hhhhhhhhccCCCC-CHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCceE
Q psy8359 217 DAAIVRIMKMRKTL-SHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYN 276 (279)
Q Consensus 217 ~AaIVRIMK~~K~l-~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~ 276 (279)
...|.- ++..-.+ +..+|..+ |..+...|.+++..|.+.|||.| .+ ..+|+
T Consensus 24 ~~~I~~-~~~g~~lPse~~La~~------~~vSr~tvr~Al~~L~~~G~i~~-~g-~Gt~V 75 (248)
T 3f8m_A 24 DRMLDG-MRIGDPFPAEREIAEQ------FEVARETVRQALRELLIDGRVER-RG-RTTVV 75 (248)
T ss_dssp HHHHHH-CCTTCBCCCHHHHHHH------TTCCHHHHHHHHHHHHHTTSEEE-ET-TEEEE
T ss_pred HHHHhC-CCCCCcCcCHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEe-CC-CEEEE
Confidence 333444 7777777 88888888 99999999999999999999999 64 34443
No 101
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=36.34 E-value=42 Score=24.96 Aligned_cols=44 Identities=11% Similarity=0.271 Sum_probs=35.5
Q ss_pred hhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 220 IVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 220 IVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
|..+......++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 22 l~~l~~~~~~~s~~ela~~------l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 22 IKRYNDSGEGAKINRIAKD------LKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp HHHHHTTTSCBCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHhcCCCcCHHHHHHH------hCCChHHHHHHHHHHHHCCCEEecC
Confidence 4445556677888877776 4678999999999999999999976
No 102
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=36.12 E-value=22 Score=26.53 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=35.7
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 35 ~~~iL~~l~~~~~~~~~~la~~------l~~s~~tvs~~l~~L~~~glv~r~~ 81 (145)
T 2a61_A 35 QFDILQKIYFEGPKRPGELSVL------LGVAKSTVTGLVKRLEADGYLTRTP 81 (145)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH------HCCCchhHHHHHHHHHHCCCeeecC
Confidence 4445555555667777777666 4678999999999999999999964
No 103
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=36.06 E-value=31 Score=25.88 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=34.9
Q ss_pred hhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 220 IVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 220 IVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
|.++......++..+|... +..+.+.+-+.|..|.++|||.|..
T Consensus 13 i~~l~~~~~~~~~~ela~~------l~vs~~tvs~~l~~Le~~Glv~r~~ 56 (142)
T 1on2_A 13 IYMLIEEKGYARVSDIAEA------LAVHPSSVTKMVQKLDKDEYLIYEK 56 (142)
T ss_dssp HHHHHHHHSSCCHHHHHHH------HTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHhhcCCCCHHHHHHH------hCCCHHHHHHHHHHHHHCCCEEEee
Confidence 4445555667888777766 5778999999999999999999975
No 104
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=35.93 E-value=37 Score=24.41 Aligned_cols=44 Identities=14% Similarity=0.388 Sum_probs=33.7
Q ss_pred hhhhhhc-cCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeec
Q psy8359 219 AIVRIMK-MRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 219 aIVRIMK-~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
.|+..+. ....++..+|..+ |..+.+.+.+.+..|.+.|+|.+.
T Consensus 22 ~Il~~l~~~g~~~s~~eLa~~------lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 22 DVLRILLDKGTEMTDEEIANQ------LNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHHHCSCBCHHHHHHT------TTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3444442 3325777776666 789999999999999999999987
No 105
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=35.84 E-value=66 Score=24.51 Aligned_cols=50 Identities=14% Similarity=0.070 Sum_probs=38.6
Q ss_pred hhhhhcc-CCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCC
Q psy8359 220 IVRIMKM-RKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKD 270 (279)
Q Consensus 220 IVRIMK~-~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~ 270 (279)
|..++.. ..-++.++|...+.+.. ...+.+.|=+.++.|.+.|+|.|-..
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~-~~is~aTVYR~L~~L~e~Glv~~~~~ 69 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKG-DAVGLTTVYRTLQSLADAGEVDVLRT 69 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 3444443 56789998888876543 45789999999999999999999754
No 106
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=35.45 E-value=67 Score=23.24 Aligned_cols=52 Identities=12% Similarity=0.245 Sum_probs=37.6
Q ss_pred hhhhhhccCCCCCHHHHHHHHHHhcCC-CCChHHHHHHHHhhhhcCceeecC--CCCCceEe
Q psy8359 219 AIVRIMKMRKTLSHNLLLSELFNQLKF-PVKPADLKKRIESLIDRDYMERDK--DKANSYNY 277 (279)
Q Consensus 219 aIVRIMK~~K~l~~~~L~~eV~~~l~F-~p~~~~iK~~Ie~LIekeYi~R~~--~d~~~y~Y 277 (279)
.|...+. ...++..+|... . ..+.+.+-..+..|.++|||+|.. .|+....|
T Consensus 26 ~IL~~L~-~~~~~~~eLa~~------l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~ 80 (112)
T 1z7u_A 26 SLMDELF-QGTKRNGELMRA------LDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEY 80 (112)
T ss_dssp HHHHHHH-HSCBCHHHHHHH------STTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEE
T ss_pred HHHHHHH-hCCCCHHHHHHH------hccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEE
Confidence 3444444 367888877766 5 679999999999999999999864 34444443
No 107
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=35.29 E-value=60 Score=25.56 Aligned_cols=53 Identities=9% Similarity=0.115 Sum_probs=42.3
Q ss_pred hhhhhhhhcc-CCCCCHHHHHHHHHHhcC-CCCChHHHHHHHHhhhhcCceeecC
Q psy8359 217 DAAIVRIMKM-RKTLSHNLLLSELFNQLK-FPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 217 ~AaIVRIMK~-~K~l~~~~L~~eV~~~l~-F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
.-+|..++.. .+-++.++|...+.+... ...+.+.|=+.++.|.+.|.|.|-.
T Consensus 35 R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~ 89 (162)
T 4ets_A 35 REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSIS 89 (162)
T ss_dssp HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3445555544 578999999999887742 5678999999999999999999974
No 108
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=35.01 E-value=46 Score=26.46 Aligned_cols=54 Identities=4% Similarity=0.132 Sum_probs=44.4
Q ss_pred hhhhhhhhhhccCCCCCHHHHHHHHHHhcC--CCCChHHHHHHHHhhhhcCceeecC
Q psy8359 215 QIDAAIVRIMKMRKTLSHNLLLSELFNQLK--FPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 215 ~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~--F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
.++-+|..++.. +.++-.+|...+-.... +.++...|=..+..|-+.|+|++..
T Consensus 2 ~l~~~iL~lL~~-~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~ 57 (179)
T 1yg2_A 2 SLPHVILTVLST-RDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVL 57 (179)
T ss_dssp CHHHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred chHHHHHHHHhc-CCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEe
Confidence 456667777764 78999999988866555 6899999999999999999999864
No 109
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=34.71 E-value=30 Score=28.30 Aligned_cols=44 Identities=14% Similarity=0.000 Sum_probs=30.7
Q ss_pred hhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCC
Q psy8359 221 VRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKD 270 (279)
Q Consensus 221 VRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~ 270 (279)
..++.....++..+|... +..+.+.+-+.|..|.++|||.|..+
T Consensus 54 L~~L~~~~~~t~~eLa~~------l~i~~stvs~~l~~Le~~GlV~r~~~ 97 (207)
T 2fxa_A 54 LWIAYQLNGASISEIAKF------GVMHVSTAFNFSKKLEERGYLRFSKR 97 (207)
T ss_dssp HHHHHHHTSEEHHHHHHH------TTCCHHHHHHHHHHHHHHTSEEEECC
T ss_pred HHHHHHCCCcCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 333333344444444443 67889999999999999999999653
No 110
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=34.31 E-value=49 Score=26.29 Aligned_cols=37 Identities=8% Similarity=0.188 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 227 RKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 227 ~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
...++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 55 ~~~~t~~eLa~~------l~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 55 EEETTLNNIARK------MGTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp GGGCCHHHHHHH------HTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCcCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEecc
Confidence 345666666555 4678899999999999999999954
No 111
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=33.95 E-value=36 Score=25.63 Aligned_cols=48 Identities=8% Similarity=0.182 Sum_probs=33.8
Q ss_pred hhhhhhhhhc-cCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 216 IDAAIVRIMK-MRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 216 I~AaIVRIMK-~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
-|..|..++- ....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~------l~i~~~tvs~~l~~Le~~Glv~r~~ 88 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAAT------MGLDPSQIVGLVDELEERGLVVRTL 88 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHH------HTCCHHHHHHHHHHHHTTTSEEC--
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHH------HCCCHhHHHHHHHHHHHCCCEEeeC
Confidence 3444444443 3345777777766 3578999999999999999999954
No 112
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=33.62 E-value=47 Score=23.24 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=35.8
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
...|.+.+ ...++..+|... +..+.+.+.+.+..|.+.|+|.+..
T Consensus 33 r~~Il~~L--~~~~~~~eLa~~------l~is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 33 RRKILRML--DKGRSEEEIMQT------LSLSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp HHHHHHHH--HTTCCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHH--cCCCCHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEEEC
Confidence 33455556 566888887776 4788999999999999999999876
No 113
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=33.43 E-value=66 Score=24.24 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=37.4
Q ss_pred hhhhhccCCCCCHHHHHHHHHHhcCCC-CChHHHHHHHHhhhhcCceeecC--CCCCceEe
Q psy8359 220 IVRIMKMRKTLSHNLLLSELFNQLKFP-VKPADLKKRIESLIDRDYMERDK--DKANSYNY 277 (279)
Q Consensus 220 IVRIMK~~K~l~~~~L~~eV~~~l~F~-p~~~~iK~~Ie~LIekeYi~R~~--~d~~~y~Y 277 (279)
|...+. ...++..+|... .. .+...+-+.+..|.+.|||+|.. .|+....|
T Consensus 40 IL~~L~-~g~~~~~eLa~~------l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y 93 (131)
T 1yyv_A 40 ILVALR-DGTHRFSDLRRX------MGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEY 93 (131)
T ss_dssp HHHHGG-GCCEEHHHHHHH------STTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEE
T ss_pred HHHHHH-cCCCCHHHHHHH------hccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEE
Confidence 444444 567888888776 43 79999999999999999999864 34444433
No 114
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=33.15 E-value=97 Score=23.53 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=39.8
Q ss_pred hhhhhhccCCCCCHHHHHHHHHHhcCC-CCChHHHHHHHHhhhhcCceeecC--CCCCceEe
Q psy8359 219 AIVRIMKMRKTLSHNLLLSELFNQLKF-PVKPADLKKRIESLIDRDYMERDK--DKANSYNY 277 (279)
Q Consensus 219 aIVRIMK~~K~l~~~~L~~eV~~~l~F-~p~~~~iK~~Ie~LIekeYi~R~~--~d~~~y~Y 277 (279)
.|++.+. .+.+.+.+|... . ..+...+-+.+..|-+.|+|+|.. +|+....|
T Consensus 30 ~IL~~L~-~g~~rf~eL~~~------l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y 84 (131)
T 4a5n_A 30 ILFYHMI-DGKKRFNEFRRI------CPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEY 84 (131)
T ss_dssp HHHHHHT-TSCBCHHHHHHH------CTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHHh-cCCcCHHHHHHH------hcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEE
Confidence 4555555 678899988877 4 578999999999999999999973 34544555
No 115
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=32.51 E-value=45 Score=24.49 Aligned_cols=51 Identities=6% Similarity=0.051 Sum_probs=36.5
Q ss_pred hhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCce
Q psy8359 218 AAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSY 275 (279)
Q Consensus 218 AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y 275 (279)
..|++.+. .+.++..+|... +..+.+.+-+.+..|.+.|+|.+..+.+..|
T Consensus 24 ~~IL~~L~-~~~~~~~eLa~~------lgis~stvs~~L~~L~~~GlV~~~~~gr~~~ 74 (118)
T 2jsc_A 24 CRILVALL-DGVCYPGQLAAH------LGLTRSNVSNHLSCLRGCGLVVATYEGRQVR 74 (118)
T ss_dssp HHHHHHHH-TTCCSTTTHHHH------HSSCHHHHHHHHHHHTTTTSEEEEECSSSEE
T ss_pred HHHHHHHH-cCCCCHHHHHHH------HCcCHHHHHHHHHHHHHCCceEEEEECCEEE
Confidence 34555555 345677776665 4678899999999999999999876444433
No 116
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=32.36 E-value=20 Score=27.04 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=28.2
Q ss_pred hhhhhhhhccC--CCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 217 DAAIVRIMKMR--KTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 217 ~AaIVRIMK~~--K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
|..|...+... ..++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 43 q~~vL~~l~~~~~~~~t~~eLa~~------l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 43 QGRMIGYIYENQESGIIQKDLAQF------FGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHC------------CHHHHHHHHHHTTSBCCC-
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHH------HCCChhHHHHHHHHHHHCCCEEeeC
Confidence 34444444444 56666655544 4567788889999999999999974
No 117
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=31.95 E-value=40 Score=24.03 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=38.1
Q ss_pred hhhhhhh-hhccCCCC-CHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCC
Q psy8359 216 IDAAIVR-IMKMRKTL-SHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKD 270 (279)
Q Consensus 216 I~AaIVR-IMK~~K~l-~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~ 270 (279)
|...|.. .++....+ +..+|..+ |..+...|.+++..|-+.|+|++..+
T Consensus 20 i~~~I~~~~l~~g~~lps~~eLa~~------~~vSr~tvr~al~~L~~~Gli~~~~g 70 (102)
T 1v4r_A 20 FRTLIKSGELAPGDTLPSVADIRAQ------FGVAAKTVSRALAVLKSEGLVSSRGA 70 (102)
T ss_dssp HHHHTTTTSCCTTSBCCCHHHHHHH------SSSCTTHHHHHTTTTTTSSCCEEETT
T ss_pred HHHHHHhCCCCCcCCCcCHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 3344444 45556666 78888777 88999999999999999999998764
No 118
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=31.36 E-value=26 Score=26.47 Aligned_cols=47 Identities=15% Similarity=0.276 Sum_probs=33.0
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 39 ~~~iL~~l~~~~~~t~~ela~~------l~~s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 39 QLFVLASLKKHGSLKVSEIAER------MEVKPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHH------HTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEeecC
Confidence 3334444444455555555554 4678999999999999999999864
No 119
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=30.33 E-value=58 Score=28.65 Aligned_cols=67 Identities=13% Similarity=0.196 Sum_probs=50.9
Q ss_pred HHHHhhhhhhhhhhhhhhhccCC-CCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeec---CCCCCceE
Q psy8359 206 ERVFQDRQYQIDAAIVRIMKMRK-TLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERD---KDKANSYN 276 (279)
Q Consensus 206 ~~i~~~R~~~I~AaIVRIMK~~K-~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~---~~d~~~y~ 276 (279)
+-....+....-+.+.++|+++. ..+.++|.+. ..|.+-.-++-.-++.|++|++|++. ..++.+|+
T Consensus 213 Ef~I~sk~~~~~~~Ll~~m~ek~~~wS~~Ei~~~----p~~~~~~idle~iL~~Lv~k~lI~~~~~~tk~~~~~~ 283 (290)
T 3c18_A 213 EHLLQSKVLSGGKYLFEVMRERDRPWTMHELMEE----SRLTELKVDLGSLVDFFIRKGLIRISYQRTKGLGVEL 283 (290)
T ss_dssp HHHHHHTHHHHHHHHHHHHTTSSSCEEHHHHHHC----GGGGGGHHHHHHHHHHHHHTTSEEEEEEECTTSSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHhcC----cccccccCCHHHHHHHHHHcCCeEEecccCCCCcEEE
Confidence 34445666777888999999988 8898876543 23777778888899999999999997 33556654
No 120
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=30.23 E-value=33 Score=22.74 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=35.6
Q ss_pred hhhhhhccC-CCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 219 AIVRIMKMR-KTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 219 aIVRIMK~~-K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
.|..+++.. ..++..+|... +-.+.+.|-+.|..|-+.|||....
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~------lglsr~tv~~~l~~L~~~G~I~~~~ 59 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKK------CQVPKKTLNQVLYRLKKEDRVSSPS 59 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHH------HCSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHcCCCcCHHHHHHH------HCcCHHHHHHHHHHHHHCCcEecCC
Confidence 355666654 56888877777 5788999999999999999998743
No 121
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=30.13 E-value=29 Score=24.38 Aligned_cols=37 Identities=5% Similarity=-0.024 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCC
Q psy8359 230 LSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKAN 273 (279)
Q Consensus 230 l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~ 273 (279)
++..+|... +..+.+.+-+.|..|.++||| +++.|+.
T Consensus 31 ~t~~eLa~~------l~i~~~tvs~~l~~Le~~Glv-~~~~d~R 67 (95)
T 2qvo_A 31 VYIQYIASK------VNSPHSYVWLIIKKFEEAKMV-ECELEGR 67 (95)
T ss_dssp EEHHHHHHH------SSSCHHHHHHHHHHHHHTTSE-EEEEETT
T ss_pred cCHHHHHHH------HCcCHHHHHHHHHHHHHCcCc-cCCCCCC
Confidence 556555555 678889999999999999999 5544543
No 122
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=29.94 E-value=84 Score=22.78 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=36.1
Q ss_pred hhhhhccCCCCC--HHHHHHHHHHhcCC-CCChHHHHHHHHhhhhcCceeecCCCCCce
Q psy8359 220 IVRIMKMRKTLS--HNLLLSELFNQLKF-PVKPADLKKRIESLIDRDYMERDKDKANSY 275 (279)
Q Consensus 220 IVRIMK~~K~l~--~~~L~~eV~~~l~F-~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y 275 (279)
|.+.+. .+.++ ..+|... + ..+.+.+-+.+..|-+.|+|+|... +..+
T Consensus 32 IL~~L~-~g~~~~~~~eL~~~------l~gis~~~ls~~L~~Le~~GlV~r~~~-r~~~ 82 (111)
T 3df8_A 32 IISVLG-NGSTRQNFNDIRSS------IPGISSTILSRRIKDLIDSGLVERRSG-QITT 82 (111)
T ss_dssp HHHHHT-SSSSCBCHHHHHHT------STTCCHHHHHHHHHHHHHTTSEEEEES-SSEE
T ss_pred HHHHHh-cCCCCCCHHHHHHH------ccCCCHHHHHHHHHHHHHCCCEEEeec-CcEE
Confidence 444454 44555 8888776 5 4799999999999999999999875 4443
No 123
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=29.87 E-value=1.3e+02 Score=22.12 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=47.3
Q ss_pred hhhhhhhhhhhhhccCCCCCHHHHHHHHHHhcC-CCCChHHHHHHHHhhhhcCceeecC
Q psy8359 212 RQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLK-FPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 212 R~~~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~-F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
++..++.+|..++. ++.++--+|..++-+. . +.++...|=..+..|-+.|||++..
T Consensus 8 ~~g~l~~~IL~lL~-~~p~~Gyei~~~l~~~-g~~~is~gtlY~~L~rLe~~GlI~~~~ 64 (117)
T 4esf_A 8 LKGSLEGCVLEIIS-RRETYGYEITRHLNDL-GFTEVVEGTVYTILVRLEKKKLVNIEK 64 (117)
T ss_dssp HHHHHHHHHHHHHH-HSCBCHHHHHHHHHHH-TCTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHChHHHHHHHHHH-cCCCCHHHHHHHHHHc-CCCCCCccHHHHHHHHHHHCCCEEEEe
Confidence 45678888888887 4778888999988664 6 6899999999999999999999863
No 124
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=29.76 E-value=61 Score=24.78 Aligned_cols=25 Identities=12% Similarity=0.391 Sum_probs=22.0
Q ss_pred CCCChHHHHHHHHhhhhcCceeecC
Q psy8359 245 FPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 245 F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
+..+.+.+-+.|..|.++|||+|..
T Consensus 56 l~~~~~tvs~~v~~Le~~GlV~R~~ 80 (151)
T 4aik_A 56 IGIEQPSLVRTLDQLEEKGLITRHT 80 (151)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HCcCHHHHHHHHHHHHhCCCeEeec
Confidence 5678889999999999999999864
No 125
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=29.20 E-value=86 Score=22.60 Aligned_cols=43 Identities=23% Similarity=0.376 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCC
Q psy8359 228 KTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKD 270 (279)
Q Consensus 228 K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~ 270 (279)
..++-.+++.++.+...|.++...+=..+..|-++|||++..+
T Consensus 23 ~~~~g~~i~~ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~~ 65 (99)
T 2co5_A 23 SRLEKKRLRSEILKRFDIDISDGVLYPLIDSLIDDKILREEEA 65 (99)
T ss_dssp TEEEGGGHHHHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred CCCcHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHCCCEEEeeC
Confidence 3456678888888877789999999999999999999998763
No 126
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=28.49 E-value=84 Score=26.15 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=35.2
Q ss_pred hhccCCCC-CHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCC
Q psy8359 223 IMKMRKTL-SHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKD 270 (279)
Q Consensus 223 IMK~~K~l-~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~ 270 (279)
.++....+ +..+|..+ |..+..-|.+++..|.+.|+|.|..+
T Consensus 22 ~~~~g~~lPse~~La~~------~~vSr~tvr~Al~~L~~~g~i~~~~g 64 (239)
T 3bwg_A 22 QLQQGDKLPVLETLMAQ------FEVSKSTITKSLELLEQKGAIFQVRG 64 (239)
T ss_dssp TCCTTCBCCCHHHHHHH------TTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCCCCCcCHHHHHHH------HCCCHHHHHHHHHHHHHCCcEEEeCC
Confidence 45555566 77777777 99999999999999999999999864
No 127
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=28.45 E-value=70 Score=24.70 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=40.1
Q ss_pred hhhhhhhcc-C-CCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCC
Q psy8359 218 AAIVRIMKM-R-KTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKD 270 (279)
Q Consensus 218 AaIVRIMK~-~-K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~ 270 (279)
.+|..++.. . +-++.++|...+.+.. -..+.+.|=+.++.|.+.|+|.|-..
T Consensus 20 ~~Il~~L~~~~~~h~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv~~~~~ 73 (150)
T 2w57_A 20 LKILEVLQQPECQHISAEELYKKLIDLG-EEIGLATVYRVLNQFDDAGIVTRHHF 73 (150)
T ss_dssp HHHHHHHTSGGGSSEEHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 445555554 3 5789999988876653 35688999999999999999998754
No 128
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=28.25 E-value=73 Score=23.37 Aligned_cols=54 Identities=9% Similarity=0.164 Sum_probs=43.2
Q ss_pred hhhhhhhhhhhccCCCCCHHHHHHHHHHhcC-CC--CCh-HHHHHHHHhhhhcCceeecC
Q psy8359 214 YQIDAAIVRIMKMRKTLSHNLLLSELFNQLK-FP--VKP-ADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 214 ~~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~-F~--p~~-~~iK~~Ie~LIekeYi~R~~ 269 (279)
..++.+|..++.. +.++-.+|..++-+ .. +. ++. ..+-..+..|-+.|||++..
T Consensus 12 ~~~~~~IL~~L~~-~~~~gyel~~~l~~-~g~~~~~is~~~tly~~L~~Le~~GlI~~~~ 69 (118)
T 2esh_A 12 WWLASTILLLVAE-KPSHGYELAERLAE-FGIEIPGIGHMGNIYRVLADLEESGFLSTEW 69 (118)
T ss_dssp HHHHHHHHHHHHH-SCBCHHHHHHHHHT-TCCSSTTCCCCCCHHHHHHHHHHTTSEEEEE
T ss_pred chHHHHHHHHHHc-CCCCHHHHHHHHHH-hCCcccCCCCcchHHHHHHHHHHCCCeEEEe
Confidence 3467777777754 78888999988765 33 44 888 99999999999999999864
No 129
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=28.09 E-value=80 Score=23.24 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=46.3
Q ss_pred hhhhhhhhhhhhhccCCCCCHHHHHHHHHHhcC-CCCChHHHHHHHHhhhhcCceeec
Q psy8359 212 RQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLK-FPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 212 R~~~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~-F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
++-.++.+|..++. ++.++--+|..++-+ .. +.++...|=..+..|-+.|||++.
T Consensus 6 ~~g~l~~~IL~~L~-~~~~~Gyei~~~l~~-~~~~~is~gtlY~~L~rLe~~GlI~~~ 61 (115)
T 4esb_A 6 LKGVLEGCILYIIS-QEEVYGYELSTKLNK-HGFTFVSEGSIYPLLLRMQKEKLIEGT 61 (115)
T ss_dssp TTTTHHHHHHHHHH-HSCEEHHHHHHHHHH-TTCTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hhCHHHHHHHHHHH-cCCCCHHHHHHHHHH-cCCCCCCcChHHHHHHHHHHCCCeEEE
Confidence 45567888888887 577888899999877 34 789999999999999999999985
No 130
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=27.90 E-value=64 Score=26.16 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=38.2
Q ss_pred hhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeec
Q psy8359 216 IDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 216 I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
.+..|.+.+. ...++..+|...+ ..+.+.+-++|..|.+.|+|+|.
T Consensus 21 ~~~~IL~~L~-~~~~s~~eLA~~l------glS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 21 TRRKILKLLR-NKEMTISQLSEIL------GKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHHHT-TCCBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 4445667777 5789999888774 68999999999999999999997
No 131
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=27.48 E-value=57 Score=23.60 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=42.5
Q ss_pred hhhhhhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 212 RQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 212 R~~~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
++-.++.+|..++.. +.++-.+|..++-+ .+.++...+-..+..|-++|||+|..
T Consensus 6 ~~g~l~~~IL~~L~~-~~~~gyel~~~l~~--~~~i~~~tly~~L~~Le~~GlI~~~~ 60 (108)
T 3l7w_A 6 SALLIEYLILAIVSK-HDSYGYDISQTIKL--IASIKESTLYPILKKLEKAGYLSTYT 60 (108)
T ss_dssp CHHHHHHHHHHHHHH-SCEEHHHHHHHHTT--TCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHc-CCCcHHHHHHHHHH--HhCCCcChHHHHHHHHHHCCCeEEEe
Confidence 344577777877764 56777777766543 27899999999999999999999874
No 132
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=26.91 E-value=60 Score=25.95 Aligned_cols=44 Identities=25% Similarity=0.341 Sum_probs=36.3
Q ss_pred hhhhhhcc-CCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCc-eeec
Q psy8359 219 AIVRIMKM-RKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDY-MERD 268 (279)
Q Consensus 219 aIVRIMK~-~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeY-i~R~ 268 (279)
.|.++++. .+.++..+|..+ |..+...|.+.|..|-+.|+ |.+.
T Consensus 25 ~Il~~L~~~~~~~s~~eLa~~------l~vS~~Ti~rdi~~L~~~G~~I~~~ 70 (187)
T 1j5y_A 25 SIVRILERSKEPVSGAQLAEE------LSVSRQVIVQDIAYLRSLGYNIVAT 70 (187)
T ss_dssp HHHHHHHHCSSCBCHHHHHHH------HTSCHHHHHHHHHHHHHHTCCCEEE
T ss_pred HHHHHHHHcCCCcCHHHHHHH------HCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 35666765 456999998888 58999999999999999999 8774
No 133
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=26.35 E-value=1.2e+02 Score=21.37 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCC
Q psy8359 230 LSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKD 270 (279)
Q Consensus 230 l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~ 270 (279)
+...+|... ...+...+.+-++.|.++|||++..+
T Consensus 21 ~~~t~La~~------~~ls~~~~~~~l~~L~~~GLI~~~~~ 55 (95)
T 1r7j_A 21 SPKTRIMYG------ANLSYALTGRYIKMLMDLEIIRQEGK 55 (95)
T ss_dssp BCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCHHHHHHH------hCcCHHHHHHHHHHHHHCCCeEEECC
Confidence 666666665 47899999999999999999999853
No 134
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=25.98 E-value=27 Score=27.81 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=19.7
Q ss_pred CCChHHHHHHHHhhhhcCceeecC
Q psy8359 246 PVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 246 ~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
+.+..+|+.++..|--.+|..|++
T Consensus 57 Tv~a~DV~~a~~~lg~~~v~d~~~ 80 (154)
T 1f1e_A 57 TLMEEHLKALADVLMVEGVEDYDG 80 (154)
T ss_dssp EECHHHHHHHHHHHTCTTSTTCCS
T ss_pred cCCHHHHHHHHHhcccccCCcccc
Confidence 568889999999988888877764
No 135
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=25.87 E-value=1e+02 Score=22.69 Aligned_cols=56 Identities=9% Similarity=0.055 Sum_probs=47.1
Q ss_pred hhhhhhhhhhhhhhccCCCCCHHHHHHHHHHhcC-CCCChHHHHHHHHhhhhcCceeec
Q psy8359 211 DRQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLK-FPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 211 ~R~~~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~-F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
-++..++.+|..++. ++.++--+|..++-+ .. +.++...+=..+..|-++|+|++.
T Consensus 9 l~~g~l~~~IL~lL~-~~p~~Gyei~~~l~~-~g~~~is~gtlY~~L~rLe~~GlI~~~ 65 (116)
T 3hhh_A 9 LLKGILEGLVLAIIQ-RKETYGYEITKILND-QGFTEIVEGTVYTILLRLEKNQWVIAE 65 (116)
T ss_dssp HHTTHHHHHHHHHHH-HSCBCHHHHHHHHHT-TSCSSCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhhhHHHHHHHHHh-cCCCCHHHHHHHHHH-cCCCCCCccHHHHHHHHHHHCCCEEEE
Confidence 356678889999887 467887899999876 33 689999999999999999999986
No 136
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.84 E-value=1.4e+02 Score=22.84 Aligned_cols=59 Identities=8% Similarity=0.118 Sum_probs=43.1
Q ss_pred hhhhhhhc-cCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCceEe
Q psy8359 218 AAIVRIMK-MRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNY 277 (279)
Q Consensus 218 AaIVRIMK-~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~Y 277 (279)
.+|..++. ...-++.++|...+.+.. -..+.+.|=+.++.|.+.|+|.|-..+.....|
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y 89 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKD-KNTSISSVYRILNFLEKENFISVLETSKSGRRY 89 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHS-TTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhC-CCCCHhhHHHHHHHHHHCCcEEEEEeCCCceEE
Confidence 34555554 356799999998886654 356889999999999999999997543333334
No 137
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=25.63 E-value=35 Score=25.42 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=32.7
Q ss_pred hhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 217 DAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 217 ~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
|..|...+..... +..+|... +..+.+.+-+.|..|.++|||.|..
T Consensus 39 ~~~iL~~l~~~~~-~~~~la~~------l~~~~~tvs~~l~~Le~~Glv~r~~ 84 (144)
T 3f3x_A 39 DFSILKATSEEPR-SMVYLANR------YFVTQSAITAAVDKLEAKGLVRRIR 84 (144)
T ss_dssp HHHHHHHHHHSCE-EHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCC-CHHHHHHH------HCCChhHHHHHHHHHHHCCCEEecc
Confidence 3444444444444 55555554 4678899999999999999999964
No 138
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.51 E-value=1.6e+02 Score=22.35 Aligned_cols=60 Identities=8% Similarity=0.063 Sum_probs=43.1
Q ss_pred hhhhhhhhc-cCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCceEe
Q psy8359 217 DAAIVRIMK-MRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNY 277 (279)
Q Consensus 217 ~AaIVRIMK-~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~Y 277 (279)
.-+|..++. ..+-++.++|...+.+.. -..+.+.|=+.++.|.+.|+|.|-..+.....|
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y 84 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGKF-PNMSVATVYNNLRVFRESGLVKELTYGDASSRF 84 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGGC-TTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhC-CCCChhhHHHHHHHHHHCCCEEEEeeCCCceEE
Confidence 344555554 456799998888875543 356899999999999999999997654333333
No 139
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=25.50 E-value=1.6e+02 Score=23.01 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=45.4
Q ss_pred hhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCceEec
Q psy8359 216 IDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNYM 278 (279)
Q Consensus 216 I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~Yv 278 (279)
-++.|.+++++++..+..+|.....++ -|..+...|-+-|..| +.++-...+ ..|.|.
T Consensus 6 R~~~I~~li~~~~~~tq~eL~~~L~~~-G~~VtqaTisRDL~eL---~~vKv~~~~-g~~~Y~ 63 (149)
T 1b4a_A 6 RHIKIREIIMSNDIETQDELVDRLREA-GFNVTQATVSRDIKEM---QLVKVPMAN-GRYKYS 63 (149)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHT-TCCCCHHHHHHHHHHT---TCEEEECSS-SCEEEE
T ss_pred HHHHHHHHHHHCCCccHHHHHHHHHHc-CCCcCHHHHHHHHHHc---CCeEEECCC-CCEEEE
Confidence 467889999999999999998875443 5999999999987776 677755444 568885
No 140
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=25.15 E-value=72 Score=23.86 Aligned_cols=42 Identities=12% Similarity=0.134 Sum_probs=34.7
Q ss_pred hhccCCCC-CHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCC
Q psy8359 223 IMKMRKTL-SHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKD 270 (279)
Q Consensus 223 IMK~~K~l-~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~ 270 (279)
.++..-.+ +..+|..+ |..+..-|.+++..|...|+|.+..+
T Consensus 28 ~~~~G~~lPse~~La~~------~~vSr~tvr~Al~~L~~~Gli~~~~g 70 (126)
T 3by6_A 28 VLSANDQLPSVRETALQ------EKINPNTVAKAYKELEAQKVIRTIPG 70 (126)
T ss_dssp SSCTTCEECCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCCCcCcCHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 44555566 77777777 78999999999999999999999874
No 141
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=24.90 E-value=73 Score=27.24 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=33.9
Q ss_pred hccCCCC-CHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCC
Q psy8359 224 MKMRKTL-SHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKD 270 (279)
Q Consensus 224 MK~~K~l-~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~ 270 (279)
++..-.| +..+|..+ |..+...|.+++..|.+.|||.|..+
T Consensus 47 ~~~g~~lPse~~La~~------~~vSr~tvr~Al~~L~~~G~i~~~~g 88 (272)
T 3eet_A 47 LPPHTRLPSQARIREE------YGVSDTVALEARKVLMAEGLVEGRSG 88 (272)
T ss_dssp SCTTSBCCCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred CCCcCCCcCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 4444556 67777777 89999999999999999999999874
No 142
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=24.59 E-value=99 Score=25.78 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=35.8
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCceEe
Q psy8359 225 KMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNY 277 (279)
Q Consensus 225 K~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~Y 277 (279)
...+-++..+|... |.-++...+..++.+...|.+-||+.....|=|
T Consensus 164 ~~~g~vt~~~la~~------l~ws~~~a~e~L~~~e~~G~l~~D~~~eg~~y~ 210 (218)
T 3cuq_B 164 SEKGSLTSEEFAKL------VGMSVLLAKERLLLAEKMGHLCRDDSVEGLRFY 210 (218)
T ss_dssp HHTSCBCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEESSSCEEEE
T ss_pred HHCCCcCHHHHHHH------hCCCHHHHHHHHHHHHHcCCEEEECCCCceEEe
Confidence 34567777666655 688899999999999999999999755444433
No 143
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=24.51 E-value=58 Score=29.79 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=26.9
Q ss_pred CCCChHHHHHHHHhhhhcCceeec--CCC-CCceEec
Q psy8359 245 FPVKPADLKKRIESLIDRDYMERD--KDK-ANSYNYM 278 (279)
Q Consensus 245 F~p~~~~iK~~Ie~LIekeYi~R~--~~d-~~~y~Yv 278 (279)
...+...+-+.|..|.++|||+|. +.| +..++|+
T Consensus 430 ~~~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~l 466 (487)
T 1hsj_A 430 SEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYV 466 (487)
T ss_dssp SCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEEC
T ss_pred HCCCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEE
Confidence 667899999999999999999984 334 4556664
No 144
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=24.17 E-value=69 Score=24.32 Aligned_cols=46 Identities=11% Similarity=0.061 Sum_probs=34.4
Q ss_pred hhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCC
Q psy8359 219 AIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKD 270 (279)
Q Consensus 219 aIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~ 270 (279)
.|...+.....++..+|... +..+.+.+-+.|..|.++|||.|..+
T Consensus 44 ~i~~~l~~~~~~~~~~la~~------l~vs~~tvs~~l~~Le~~Glv~r~~~ 89 (155)
T 2h09_A 44 LISDLIREVGEARQVDMAAR------LGVSQPTVAKMLKRLATMGLIEMIPW 89 (155)
T ss_dssp HHHHHHHHHSCCCHHHHHHH------HTSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred HHHHHHHhCCCcCHHHHHHH------hCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 33444444466777666655 67899999999999999999999763
No 145
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=23.61 E-value=36 Score=26.27 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=30.5
Q ss_pred hhhhhhhhcc--CCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 217 DAAIVRIMKM--RKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 217 ~AaIVRIMK~--~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
|..|...+.. ...++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 48 q~~vL~~l~~~~~~~~t~~eLa~~------l~~~~~tvs~~l~~Le~~Glv~r~~ 96 (168)
T 3u2r_A 48 QYNTLRLLRSVHPEGMATLQIADR------LISRAPDITRLIDRLDDRGLVLRTR 96 (168)
T ss_dssp HHHHHHHHHHHTTSCEEHHHHHHH------C---CTHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHH------HCCChhhHHHHHHHHHHCCCEeecC
Confidence 4444444444 245666655554 5667788999999999999999964
No 146
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=23.06 E-value=1.3e+02 Score=24.98 Aligned_cols=42 Identities=10% Similarity=0.248 Sum_probs=33.0
Q ss_pred hhccCCCC-CHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCC
Q psy8359 223 IMKMRKTL-SHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKD 270 (279)
Q Consensus 223 IMK~~K~l-~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~ 270 (279)
.++..-.+ +..+|..+ |..+...+.+++..|.+.|||.|..+
T Consensus 26 ~~~~g~~lPse~~La~~------~~vSr~tvr~Al~~L~~~G~i~~~~g 68 (236)
T 3edp_A 26 EYKTGMLMPNETALQEI------YSSSRTTIRRAVDLLVEEGLVVRKNG 68 (236)
T ss_dssp SSCCCC--CCHHHHHHH------TTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCcCCCcCHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEEECC
Confidence 34444555 67777766 89999999999999999999999874
No 147
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=22.19 E-value=1.2e+02 Score=25.21 Aligned_cols=47 Identities=13% Similarity=0.286 Sum_probs=36.7
Q ss_pred hhccCCCC-CHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCceE
Q psy8359 223 IMKMRKTL-SHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYN 276 (279)
Q Consensus 223 IMK~~K~l-~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~ 276 (279)
.++....+ +..+|..+ |..+...+.+++..|.+.|+|.|..+. .+|+
T Consensus 27 ~~~~g~~lPse~~La~~------~~vSr~tvr~Al~~L~~~G~i~~~~g~-G~~V 74 (243)
T 2wv0_A 27 ELQPDMPLPSEREYAEQ------FGISRMTVRQALSNLVNEGLLYRLKGR-GTFV 74 (243)
T ss_dssp SSCTTCBCCCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEECTTS-CEEE
T ss_pred CCCCcCCCcCHHHHHHH------HCcCHHHHHHHHHHHHHCCcEEEeCCC-eEEE
Confidence 34555566 67777777 889999999999999999999998643 4443
No 148
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=21.49 E-value=2.5e+02 Score=20.79 Aligned_cols=57 Identities=11% Similarity=0.192 Sum_probs=48.5
Q ss_pred HhhhhhhhhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeec
Q psy8359 209 FQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERD 268 (279)
Q Consensus 209 ~~~R~~~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~ 268 (279)
.+-++..++.+|..++. +.++--+|..++-+.- +.++...|=..+..|-+.|||++.
T Consensus 15 ~~l~~g~l~~~IL~lL~--~p~~GYei~~~l~~~~-~~is~gtlY~~L~rLe~~GlI~~~ 71 (123)
T 3ri2_A 15 LELRRGTLVMLVLSQLR--EPAYGYALVKSLADHG-IPIEANTLYPLMRRLESQGLLASE 71 (123)
T ss_dssp HHHHHHHHHHHHHHHTT--SCEEHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhCcHHHHHHHHHc--CCCCHHHHHHHHHHhC-CCCCcchHHHHHHHHHHCCCEEEE
Confidence 44567778999999998 7788888988876643 899999999999999999999986
No 149
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=21.42 E-value=59 Score=23.76 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=36.5
Q ss_pred hhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCce
Q psy8359 218 AAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSY 275 (279)
Q Consensus 218 AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y 275 (279)
-.|++.+. .+.++..+|... +..+.+.+-+.+..|.+.|+|.+..+.+..|
T Consensus 21 ~~Il~~L~-~~~~~~~eLa~~------l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~ 71 (118)
T 3f6o_A 21 RAVLGRLS-RGPATVSELAKP------FDMALPSFMKHIHFLEDSGWIRTHKQGRVRT 71 (118)
T ss_dssp HHHHHHHH-TCCEEHHHHHTT------CCSCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHHH-hCCCCHHHHHHH------hCcCHHHHHHHHHHHHHCCCeEEEecCCEEE
Confidence 34455554 456666665544 6789999999999999999998876544444
No 150
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=21.39 E-value=91 Score=22.56 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=35.4
Q ss_pred hhhhhhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCC
Q psy8359 214 YQIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKD 270 (279)
Q Consensus 214 ~~I~AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~ 270 (279)
...|..|-+........+..+|.. +....+...+-+.|+.|+.+||++.+++
T Consensus 15 ~~~QfsiL~~L~~~~~~t~~~Lae-----~~l~~drstvsrnl~~L~r~GlVe~~~~ 66 (95)
T 1bja_A 15 NEKTATILITIAKKDFITAAEVRE-----VHPDLGNAVVNSNIGVLIKKGLVEKSGD 66 (95)
T ss_dssp CHHHHHHHHHHHHSTTBCHHHHHH-----TCTTSCHHHHHHHHHHHHTTTSEEEETT
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHH-----HHhcccHHHHHHHHHHHHHCCCeecCCC
Confidence 344555555555555666665554 2256788889999999999999994443
No 151
>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=21.01 E-value=42 Score=18.41 Aligned_cols=11 Identities=18% Similarity=0.546 Sum_probs=9.7
Q ss_pred EEEEeccCccc
Q psy8359 3 VAVLISSNGIS 13 (279)
Q Consensus 3 ~~~~~~~~~~~ 13 (279)
|++|+|+|.+.
T Consensus 7 Vrvfvd~~g~V 17 (26)
T 1hym_B 7 VRIWVNKRGLV 17 (26)
T ss_dssp EEEEEETTTEE
T ss_pred EEEEECCCCcE
Confidence 78999999876
No 152
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=20.98 E-value=1.1e+02 Score=27.39 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=40.1
Q ss_pred hhhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 218 AAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 218 AaIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
..|.+++..+..++..+|... .-.+.+.+.+.++.|++.|+|+...
T Consensus 19 ~~il~~l~~~~~~sr~~la~~------~~ls~~tv~~~v~~L~~~g~i~~~~ 64 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRL------AQLAPASITKIVHEMLEAHLVQELE 64 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHH------TTCCHHHHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHHcCCcCHHHHHHH------HCCCHHHHHHHHHHHHHCCcEEeec
Confidence 346788888999999999888 6899999999999999999998853
No 153
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=20.98 E-value=96 Score=26.21 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=35.5
Q ss_pred hhhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecC
Q psy8359 219 AIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDK 269 (279)
Q Consensus 219 aIVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~ 269 (279)
.|.+.+.....++..+|...+ ..+.+.+-+.+..|.++|||+|..
T Consensus 156 ~IL~~L~~~~~~s~~eLA~~l------glsksTv~r~L~~Le~~GlV~r~~ 200 (244)
T 2wte_A 156 KLLNVLYETKGTGITELAKML------DKSEKTLINKIAELKKFGILTQKG 200 (244)
T ss_dssp HHHHHHHHHTCBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEeC
Confidence 344444456678888887774 678888999999999999999974
No 154
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=20.88 E-value=56 Score=24.41 Aligned_cols=18 Identities=17% Similarity=0.442 Sum_probs=16.9
Q ss_pred ChHHHHHHHHhhhhcCce
Q psy8359 248 KPADLKKRIESLIDRDYM 265 (279)
Q Consensus 248 ~~~~iK~~Ie~LIekeYi 265 (279)
+.++|.+.|+.||.+||.
T Consensus 21 t~eqI~kQI~Yll~qGw~ 38 (109)
T 1rbl_M 21 SDRQIAAQIEYMIEQGFH 38 (109)
T ss_dssp CHHHHHHHHHHHHHHTCE
T ss_pred CHHHHHHHHHHHHHCCCE
Confidence 889999999999999985
No 155
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.55 E-value=1.9e+02 Score=21.45 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=39.5
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCCCCCceEe
Q psy8359 225 KMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKDKANSYNY 277 (279)
Q Consensus 225 K~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~d~~~y~Y 277 (279)
.+..-++.++|...+.+.. -..+.+.|=+.++.|.+.|+|.+-..+.....|
T Consensus 22 ~~~~~~sa~ei~~~l~~~~-~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y 73 (131)
T 2o03_A 22 TLDDFRSAQELHDELRRRG-ENIGLTTVYRTLQSMASSGLVDTLHTDTGESVY 73 (131)
T ss_dssp HCCSCEEHHHHHHHHHHTT-CCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEE
T ss_pred hCCCCCCHHHHHHHHHHhC-CCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEE
Confidence 3456899999998876653 356889999999999999999997644333333
No 156
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59
Probab=20.38 E-value=68 Score=24.22 Aligned_cols=25 Identities=8% Similarity=0.186 Sum_probs=20.1
Q ss_pred hHHHHHHHHhhhhcCceeecCCCCC
Q psy8359 249 PADLKKRIESLIDRDYMERDKDKAN 273 (279)
Q Consensus 249 ~~~iK~~Ie~LIekeYi~R~~~d~~ 273 (279)
...+|.+|.-|+++||+-+.....+
T Consensus 77 ~sifKeAi~~Lqe~G~VfqK~~~~d 101 (120)
T 1wj5_A 77 QRVFKNALQLLQEKGLVFQRDSGSD 101 (120)
T ss_dssp HHHHHHHHHHHHHHTSEECSSCSSS
T ss_pred HHHHHHHHHHHHHCCEEEeccCCcc
Confidence 4678999999999999987764444
No 157
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=20.03 E-value=1.2e+02 Score=24.77 Aligned_cols=45 Identities=11% Similarity=0.315 Sum_probs=36.2
Q ss_pred hhhhhccCCCCCHHHHHHHHHHhcCCCCChHHHHHHHHhhhhcCceeecCC
Q psy8359 220 IVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKRIESLIDRDYMERDKD 270 (279)
Q Consensus 220 IVRIMK~~K~l~~~~L~~eV~~~l~F~p~~~~iK~~Ie~LIekeYi~R~~~ 270 (279)
|.++......++..+|-.. +..+.+-+-+.|..|.++|||.|..+
T Consensus 11 I~~l~~~~~~~~~~~lA~~------l~vs~~tvs~~l~~Le~~GlV~r~~~ 55 (214)
T 3hrs_A 11 LYELGTRHNKITNKEIAQL------MQVSPPAVTEMMKKLLAEELLIKDKK 55 (214)
T ss_dssp HHHTTSSCSCCCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHhcCCCcCHHHHHHH------HCCChhHHHHHHHHHHHCCCEEEecC
Confidence 3445556777888777766 57889999999999999999999863
Done!