RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8359
         (279 letters)



>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 84

 Score =  123 bits (311), Expect = 9e-37
 Identities = 71/84 (84%), Positives = 76/84 (90%)

Query: 196 ETNEEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLKFPVKPADLKKR 255
           ET EEQ +T ERVFQDRQYQIDAAIVRIMKMRKTL HNLL+SEL+NQLKFPVKP DLKKR
Sbjct: 1   ETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKR 60

Query: 256 IESLIDRDYMERDKDKANSYNYMA 279
           IESLIDRDYMERDKD  N Y+Y+A
Sbjct: 61  IESLIDRDYMERDKDNPNQYHYVA 84


>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 92

 Score =  113 bits (284), Expect = 1e-32
 Identities = 40/90 (44%), Positives = 61/90 (67%), Gaps = 2/90 (2%)

Query: 192 IQMKETNEEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLK--FPVKP 249
            +  E++ E+K T ++V  DR+++I+AAIVRIMK RK + HN+L++E+  QLK  F   P
Sbjct: 3   AKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSP 62

Query: 250 ADLKKRIESLIDRDYMERDKDKANSYNYMA 279
             +KKRIE LI+R+Y+ R  +    Y Y+A
Sbjct: 63  VVIKKRIEGLIEREYLARTPEDRKVYTYVA 92


>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 90

 Score =  110 bits (277), Expect = 1e-31
 Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 2/87 (2%)

Query: 195 KETNEEQKATEERVFQDRQYQIDAAIVRIMKMRKTLSHNLLLSELFNQLK--FPVKPADL 252
            E  +EQ+ T + + +DR+  I AAIVRIMKMRK L H  LL E+  QL   F  +   +
Sbjct: 4   TEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVI 63

Query: 253 KKRIESLIDRDYMERDKDKANSYNYMA 279
           KK I+ LI+++Y+ER   + ++Y+Y+A
Sbjct: 64  KKCIDILIEKEYLERVDGEKDTYSYLA 90


>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 276

 Score = 76.5 bits (188), Expect = 6e-17
 Identities = 34/65 (52%), Positives = 46/65 (70%)

Query: 62  KVDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTSKLEGMFKDMELSKDINVAFKQYMG 121
              LAKRL+   SAS DAE SM+SKLKQ CG  +TSKL+ MF+D+ +SKD+N  FK+++ 
Sbjct: 57  AKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLT 116

Query: 122 NLKED 126
           N +  
Sbjct: 117 NSEPL 121



 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 137 IDLTDADLRRTLQSLACGKTRVLKKTPASRD---IEDCDRFRFNNDFTFKLFRIKIN 190
             +    L + LQ L   K  VL+   A+ D   ++     +    +  K  R+ IN
Sbjct: 219 TQIKMDILAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNIN 275


>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 273

 Score = 74.6 bits (183), Expect = 3e-16
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 137 IDLTDADLRRTLQSLACGKTRVLKKTPASRDIEDCDRFRFNNDFTFKLFRIKINQIQMK 195
             + D++LRRTLQSLACGK RVL K+P  +++ED D+F FN +F  KLFRIKINQIQMK
Sbjct: 215 TGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMK 273



 Score = 73.5 bits (180), Expect = 7e-16
 Identities = 53/66 (80%), Positives = 55/66 (83%)

Query: 62  KVDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTSKLEGMFKDMELSKDINVAFKQYMG 121
           K DLAKRLLVGKSASVDAEKSMLSKLK ECG  FTSKLEGMFKDMELSKDI V FKQ+M 
Sbjct: 52  KKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQ 111

Query: 122 NLKEDK 127
           N  +  
Sbjct: 112 NQSDSG 117


>d1g5qa_ c.34.1.1 (A:) Epidermin modifying enzyme
          (peptidyl-cysteine decarboxylase) EpiD {Staphylococcus
          epidermidis [TaxId: 1282]}
          Length = 174

 Score = 25.1 bits (54), Expect = 8.0
 Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 65 LAKRLLVGKSASVDAEKS--MLSKLKQEC 91
          +  +LL+  +AS++       + +LKQ  
Sbjct: 1  MYGKLLICATASINVININHYIVELKQHF 29


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.130    0.353 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 932,064
Number of extensions: 40549
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 11
Length of query: 279
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,254,276
Effective search space: 244583820
Effective search space used: 244583820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.9 bits)