Query psy836
Match_columns 122
No_of_seqs 128 out of 296
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 16:41:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_m 60S ribosomal protein L 100.0 1.8E-48 6.1E-53 277.2 8.7 92 6-122 1-92 (92)
2 3izc_m 60S ribosomal protein R 100.0 2.4E-48 8.2E-53 276.6 8.5 92 6-122 1-92 (92)
3 4a17_Y RPL37A, 60S ribosomal p 100.0 4.8E-48 1.7E-52 279.9 8.1 92 6-122 1-92 (103)
4 3cc2_Z 50S ribosomal protein L 100.0 1.1E-44 3.7E-49 266.7 6.9 93 4-121 23-115 (116)
5 3j21_i 50S ribosomal protein L 100.0 5.5E-43 1.9E-47 245.0 6.6 82 6-113 1-82 (83)
6 1ffk_W Ribosomal protein L37AE 100.0 8.1E-38 2.8E-42 214.1 7.0 72 15-86 1-72 (73)
7 1vq8_Z 50S ribosomal protein L 100.0 1.4E-37 4.8E-42 216.1 6.9 81 16-121 2-82 (83)
8 3jyw_9 60S ribosomal protein L 100.0 3.2E-38 1.1E-42 216.0 1.7 71 16-111 1-71 (72)
9 1ffk_W Ribosomal protein L37AE 99.4 8E-14 2.7E-18 95.2 0.3 51 54-111 22-72 (73)
10 3j21_g 50S ribosomal protein L 98.3 4.2E-08 1.4E-12 63.0 -0.7 35 30-68 3-37 (51)
11 3jyw_9 60S ribosomal protein L 97.6 3.4E-06 1.1E-10 57.4 -1.7 23 64-86 49-71 (72)
12 3iz5_m 60S ribosomal protein L 97.6 3.1E-06 1E-10 60.0 -2.2 25 65-89 60-84 (92)
13 3izc_m 60S ribosomal protein R 97.6 3.1E-06 1E-10 60.0 -2.2 25 65-89 60-84 (92)
14 4a17_Y RPL37A, 60S ribosomal p 97.5 5E-06 1.7E-10 60.1 -2.1 28 63-90 58-85 (103)
15 3j21_i 50S ribosomal protein L 97.0 7.1E-05 2.4E-09 52.1 -0.7 23 63-85 57-79 (83)
16 1vq8_Z 50S ribosomal protein L 97.0 6.1E-05 2.1E-09 51.8 -1.4 25 65-89 51-75 (83)
17 3cc2_Z 50S ribosomal protein L 96.9 8.9E-05 3.1E-09 54.4 -1.4 25 65-89 84-108 (116)
18 3j20_Y 30S ribosomal protein S 94.4 0.023 7.9E-07 35.5 2.4 29 40-68 18-46 (50)
19 1dl6_A Transcription factor II 94.2 0.019 6.5E-07 36.5 1.7 37 40-76 10-47 (58)
20 1pft_A TFIIB, PFTFIIBN; N-term 93.2 0.037 1.3E-06 33.4 1.7 36 40-75 4-40 (50)
21 3ga8_A HTH-type transcriptiona 91.9 1.6 5.4E-05 28.2 8.4 61 43-120 4-66 (78)
22 2k4x_A 30S ribosomal protein S 91.2 0.085 2.9E-06 33.4 1.6 30 39-68 16-45 (55)
23 4bbr_M Transcription initiatio 88.6 0.21 7.1E-06 40.7 2.3 39 35-73 15-56 (345)
24 3j21_g 50S ribosomal protein L 87.9 0.14 4.6E-06 32.5 0.6 24 59-93 14-37 (51)
25 3u50_C Telomerase-associated p 87.3 0.45 1.5E-05 36.1 3.3 34 43-78 44-77 (172)
26 1l1o_C Replication protein A 7 85.3 0.68 2.3E-05 34.3 3.4 33 43-76 45-79 (181)
27 1vd4_A Transcription initiatio 84.8 0.15 5E-06 30.4 -0.4 30 40-69 13-49 (62)
28 1wii_A Hypothetical UPF0222 pr 84.3 3.7 0.00013 28.1 6.5 52 37-108 19-71 (85)
29 1twf_L ABC10-alpha, DNA-direct 82.0 0.19 6.5E-06 33.3 -0.8 30 38-68 25-54 (70)
30 2con_A RUH-035 protein, NIN on 81.7 0.68 2.3E-05 31.5 1.9 21 39-59 28-48 (79)
31 1nui_A DNA primase/helicase; z 81.6 0.57 2E-05 35.5 1.7 28 41-68 14-42 (255)
32 3o9x_A Uncharacterized HTH-typ 81.6 3.7 0.00013 27.6 5.6 47 43-98 4-50 (133)
33 1qyp_A RNA polymerase II; tran 80.9 1.7 6E-05 26.6 3.5 13 41-53 15-27 (57)
34 2m0e_A Zinc finger and BTB dom 79.9 0.68 2.3E-05 21.8 1.1 10 41-50 2-11 (29)
35 3k1f_M Transcription initiatio 78.7 0.33 1.1E-05 38.3 -0.5 35 39-73 19-56 (197)
36 2jrp_A Putative cytoplasmic pr 78.3 1.5 5.2E-05 30.0 2.8 31 42-74 3-33 (81)
37 1ard_A Yeast transcription fac 77.8 0.9 3.1E-05 21.5 1.2 10 41-50 2-11 (29)
38 2kvh_A Zinc finger and BTB dom 77.6 0.75 2.6E-05 21.9 0.8 11 40-50 2-12 (27)
39 1rik_A E6APC1 peptide; E6-bind 77.4 0.77 2.6E-05 21.9 0.8 10 41-50 2-11 (29)
40 4gop_C Putative uncharacterize 77.2 1.5 5.1E-05 36.1 3.0 11 27-37 271-281 (444)
41 1klr_A Zinc finger Y-chromosom 76.9 0.95 3.3E-05 21.4 1.1 11 41-51 2-12 (30)
42 2lvu_A Zinc finger and BTB dom 78.4 0.51 1.7E-05 22.4 0.0 11 41-51 2-12 (26)
43 3cng_A Nudix hydrolase; struct 76.5 8.2 0.00028 27.3 6.4 26 43-68 5-34 (189)
44 1p7a_A BF3, BKLF, kruppel-like 76.5 0.99 3.4E-05 23.0 1.1 12 40-51 10-21 (37)
45 1paa_A Yeast transcription fac 76.5 1 3.5E-05 21.6 1.2 10 41-50 2-11 (30)
46 2kvf_A Zinc finger and BTB dom 76.2 0.9 3.1E-05 21.6 0.9 11 40-50 2-12 (28)
47 1znf_A 31ST zinc finger from X 76.1 1 3.5E-05 21.1 1.1 10 41-50 1-10 (27)
48 2kfq_A FP1; protein, de novo p 75.8 1 3.6E-05 22.7 1.1 10 41-50 2-11 (32)
49 2m0f_A Zinc finger and BTB dom 75.6 0.89 3E-05 21.4 0.8 10 41-50 2-11 (29)
50 2kvg_A Zinc finger and BTB dom 75.2 0.66 2.3E-05 22.4 0.2 11 40-50 2-12 (27)
51 1twf_I B12.6, DNA-directed RNA 74.6 3.2 0.00011 29.2 3.7 30 41-70 4-37 (122)
52 1gh9_A 8.3 kDa protein (gene M 74.6 1 3.4E-05 30.0 1.0 17 102-118 40-56 (71)
53 2m0d_A Zinc finger and BTB dom 74.4 1 3.5E-05 21.3 0.8 11 40-50 2-12 (30)
54 3k7a_M Transcription initiatio 73.4 0.75 2.6E-05 37.0 0.2 34 39-72 19-55 (345)
55 2lvt_A Zinc finger and BTB dom 75.5 0.7 2.4E-05 22.2 0.0 11 41-51 2-12 (29)
56 1d0q_A DNA primase; zinc-bindi 72.6 1.2 4.1E-05 30.2 1.0 26 41-66 37-65 (103)
57 1rim_A E6APC2 peptide; E6-bind 72.3 1.4 4.9E-05 22.4 1.1 10 41-50 2-11 (33)
58 2els_A Zinc finger protein 406 72.1 1.2 4.2E-05 22.6 0.8 11 40-50 8-18 (36)
59 2elr_A Zinc finger protein 406 71.8 1.5 5.3E-05 22.0 1.2 12 40-51 8-19 (36)
60 2elx_A Zinc finger protein 406 71.6 1.3 4.5E-05 22.0 0.9 12 40-51 6-17 (35)
61 2elt_A Zinc finger protein 406 71.0 1.4 4.7E-05 22.2 0.8 11 40-50 8-18 (36)
62 2lvr_A Zinc finger and BTB dom 73.4 0.87 3E-05 21.7 0.0 13 40-52 2-14 (30)
63 2elp_A Zinc finger protein 406 70.0 1.5 5E-05 22.4 0.8 12 40-51 8-19 (37)
64 1srk_A Zinc finger protein ZFP 69.7 1.6 5.3E-05 21.9 0.9 12 40-51 6-17 (35)
65 2elv_A Zinc finger protein 406 69.4 1.6 5.4E-05 22.1 0.9 11 40-50 8-18 (36)
66 2elm_A Zinc finger protein 406 68.8 1.5 5.2E-05 22.7 0.7 12 40-51 8-19 (37)
67 2elq_A Zinc finger protein 406 68.6 1.6 5.6E-05 22.1 0.8 12 40-51 8-19 (36)
68 2ds5_A CLPX, ATP-dependent CLP 67.6 1.5 5E-05 27.5 0.6 26 40-65 10-39 (51)
69 2xzm_9 RPS31E; ribosome, trans 67.3 2.6 9E-05 32.3 2.1 27 42-68 114-140 (189)
70 4esj_A Type-2 restriction enzy 67.3 2.4 8.1E-05 34.7 1.9 51 38-100 31-85 (257)
71 3a43_A HYPD, hydrogenase nicke 67.3 2.3 7.9E-05 30.6 1.6 44 24-73 41-84 (139)
72 2elo_A Zinc finger protein 406 66.5 1.4 4.7E-05 22.4 0.3 11 40-50 8-18 (37)
73 3h0g_L DNA-directed RNA polyme 65.6 1.5 5E-05 28.7 0.3 30 38-69 18-48 (63)
74 2ytb_A Zinc finger protein 32; 65.3 2.4 8.1E-05 22.1 1.1 12 40-51 10-21 (42)
75 3u50_C Telomerase-associated p 65.1 3.3 0.00011 31.3 2.2 60 24-93 4-68 (172)
76 1wjv_A Cell growth regulating 64.9 0.88 3E-05 31.2 -0.9 18 86-103 39-56 (79)
77 2eos_A B-cell lymphoma 6 prote 64.4 2.6 9E-05 22.1 1.2 11 40-50 10-20 (42)
78 2lk0_A RNA-binding protein 5; 64.2 2.3 8E-05 23.9 0.9 12 57-68 3-14 (32)
79 1yuz_A Nigerythrin; rubrythrin 63.9 1.2 4.3E-05 33.8 -0.3 14 58-71 170-183 (202)
80 2ct1_A Transcriptional repress 63.7 2.3 8E-05 25.3 0.9 11 40-50 44-54 (77)
81 2drp_A Protein (tramtrack DNA- 63.5 2.4 8.1E-05 24.3 0.9 11 40-50 39-49 (66)
82 1njq_A Superman protein; zinc- 63.4 2.3 8E-05 22.0 0.8 12 40-51 5-16 (39)
83 2epr_A POZ-, at HOOK-, and zin 63.3 2.6 9E-05 23.0 1.1 10 40-49 39-48 (48)
84 1ovx_A ATP-dependent CLP prote 62.6 1.8 6.2E-05 28.7 0.3 25 41-65 18-46 (67)
85 6rxn_A Rubredoxin; electron tr 62.4 1.3 4.4E-05 27.2 -0.4 10 40-49 3-12 (46)
86 2enf_A Zinc finger protein 347 62.3 3.1 0.00011 22.2 1.2 12 40-51 11-22 (46)
87 2epc_A Zinc finger protein 32; 62.2 2.6 8.9E-05 21.9 0.9 11 40-50 10-20 (42)
88 2yte_A Zinc finger protein 473 62.2 3.1 0.0001 21.6 1.2 11 40-50 9-19 (42)
89 2epv_A Zinc finger protein 268 62.1 2.6 8.9E-05 22.5 0.9 12 40-51 11-22 (44)
90 2eq1_A Zinc finger protein 347 61.5 2.9 0.0001 22.3 1.0 11 40-50 11-21 (46)
91 1lko_A Rubrerythrin all-iron(I 61.5 5.4 0.00018 29.7 2.8 32 52-92 148-179 (191)
92 2en7_A Zinc finger protein 268 61.2 3.1 0.00011 21.8 1.1 11 40-50 11-21 (44)
93 2yti_A Zinc finger protein 347 61.0 3.2 0.00011 22.2 1.1 13 39-51 10-22 (46)
94 2ept_A Zinc finger protein 32; 61.0 2.8 9.7E-05 21.8 0.9 11 40-50 9-19 (41)
95 2eon_A ZFP-95, zinc finger pro 61.0 3.4 0.00012 22.2 1.2 12 40-51 11-22 (46)
96 2yu5_A Zinc finger protein 473 60.8 2.8 9.5E-05 22.2 0.8 11 40-50 11-21 (44)
97 2en2_A B-cell lymphoma 6 prote 60.5 2.8 9.6E-05 21.9 0.8 11 40-50 10-20 (42)
98 2emi_A Zinc finger protein 484 60.5 2.9 9.9E-05 22.4 0.9 12 40-51 11-22 (46)
99 2wbt_A B-129; zinc finger; 2.7 60.4 1.2 4.3E-05 28.9 -0.8 14 38-51 71-84 (129)
100 2eoh_A Zinc finger protein 28 60.2 3.3 0.00011 22.2 1.1 12 40-51 11-22 (46)
101 2el5_A Zinc finger protein 268 60.1 3 0.0001 21.8 0.9 11 40-50 9-19 (42)
102 2emz_A ZFP-95, zinc finger pro 60.1 3.4 0.00012 22.2 1.1 12 40-51 11-22 (46)
103 2ytp_A Zinc finger protein 484 59.5 3.1 0.00011 22.3 0.9 12 40-51 11-22 (46)
104 2eof_A Zinc finger protein 268 59.3 3 0.0001 21.9 0.8 12 40-51 11-22 (44)
105 2emj_A Zinc finger protein 28 59.2 3.1 0.0001 22.3 0.8 11 40-50 11-21 (46)
106 2eov_A Zinc finger protein 484 59.1 3.8 0.00013 21.7 1.2 11 40-50 11-21 (46)
107 2eq2_A Zinc finger protein 347 59.1 3.6 0.00012 21.9 1.1 12 40-51 11-22 (46)
108 2ep1_A Zinc finger protein 484 59.0 3.6 0.00012 21.9 1.1 12 40-51 11-22 (46)
109 2eow_A Zinc finger protein 347 58.9 3.1 0.00011 22.1 0.8 11 40-50 11-21 (46)
110 2emg_A Zinc finger protein 484 58.9 3.7 0.00013 21.9 1.2 12 40-51 11-22 (46)
111 2ytf_A Zinc finger protein 268 58.7 3.3 0.00011 22.0 0.9 11 40-50 11-21 (46)
112 1fv5_A First zinc finger of U- 58.7 2.3 7.9E-05 23.8 0.3 12 39-50 6-17 (36)
113 2yts_A Zinc finger protein 484 58.6 3.3 0.00011 22.0 0.9 11 40-50 11-21 (46)
114 2enh_A Zinc finger protein 28 58.6 3.8 0.00013 21.9 1.2 12 40-51 11-22 (46)
115 2ctu_A Zinc finger protein 483 58.6 0.8 2.7E-05 26.4 -1.8 30 40-69 17-49 (73)
116 2em4_A Zinc finger protein 28 58.5 3.3 0.00011 22.2 0.9 12 40-51 11-22 (46)
117 2yth_A Zinc finger protein 224 58.5 3.9 0.00013 21.9 1.2 12 40-51 11-22 (46)
118 2en3_A ZFP-95, zinc finger pro 58.3 3.3 0.00011 22.1 0.9 12 40-51 11-22 (46)
119 2eop_A Zinc finger protein 268 58.1 3.9 0.00013 21.7 1.2 12 40-51 11-22 (46)
120 2yto_A Zinc finger protein 484 58.0 3.4 0.00012 22.2 0.9 11 40-50 11-21 (46)
121 2eoy_A Zinc finger protein 473 58.0 3.4 0.00012 22.1 0.9 11 40-50 11-21 (46)
122 2emb_A Zinc finger protein 473 57.9 3.3 0.00011 21.9 0.8 12 40-51 11-22 (44)
123 2eom_A ZFP-95, zinc finger pro 57.7 4 0.00014 21.9 1.2 12 40-51 11-22 (46)
124 3pwf_A Rubrerythrin; non heme 57.6 2.4 8.2E-05 31.5 0.2 13 58-70 137-149 (170)
125 2yrj_A Zinc finger protein 473 57.5 3.5 0.00012 21.9 0.9 12 40-51 11-22 (46)
126 2em6_A Zinc finger protein 224 57.2 4.3 0.00015 21.7 1.2 12 40-51 11-22 (46)
127 2em3_A Zinc finger protein 28 57.1 3.6 0.00012 22.0 0.9 12 40-51 11-22 (46)
128 2ep3_A Zinc finger protein 484 57.0 3.6 0.00012 21.9 0.9 12 40-51 11-22 (46)
129 2emk_A Zinc finger protein 28 56.7 4.4 0.00015 21.7 1.2 12 40-51 11-22 (46)
130 2jne_A Hypothetical protein YF 56.7 9.6 0.00033 27.2 3.3 32 41-74 32-63 (101)
131 2eou_A Zinc finger protein 473 56.6 4.1 0.00014 21.6 1.0 12 40-51 11-22 (44)
132 2en9_A Zinc finger protein 28 56.3 4.4 0.00015 21.7 1.2 12 40-51 11-22 (46)
133 2ely_A Zinc finger protein 224 56.2 4.5 0.00015 21.6 1.2 12 40-51 11-22 (46)
134 2ytn_A Zinc finger protein 347 56.1 4.5 0.00015 21.6 1.2 12 39-50 10-21 (46)
135 2eoq_A Zinc finger protein 224 56.1 4.3 0.00015 21.6 1.1 12 40-51 11-22 (46)
136 2ytj_A Zinc finger protein 484 56.0 3.8 0.00013 21.8 0.9 12 40-51 11-22 (46)
137 2yrm_A B-cell lymphoma 6 prote 55.9 4.5 0.00016 21.5 1.2 12 40-51 9-20 (43)
138 2em0_A Zinc finger protein 224 55.8 4.4 0.00015 21.6 1.1 12 40-51 11-22 (46)
139 3h0g_I DNA-directed RNA polyme 55.8 4.2 0.00014 28.2 1.3 31 42-72 5-39 (113)
140 2eoj_A Zinc finger protein 268 55.8 2.8 9.5E-05 22.1 0.3 11 40-50 11-21 (44)
141 2em2_A Zinc finger protein 28 55.8 3.9 0.00013 21.9 0.9 12 40-51 11-22 (46)
142 2epz_A Zinc finger protein 28 55.7 4.4 0.00015 21.6 1.1 12 40-51 11-22 (46)
143 2epx_A Zinc finger protein 28 55.5 4.7 0.00016 21.4 1.2 12 40-51 11-22 (47)
144 2eor_A Zinc finger protein 224 55.5 3.8 0.00013 21.8 0.8 12 40-51 11-22 (46)
145 2epw_A Zinc finger protein 268 55.4 4 0.00014 21.7 0.9 11 40-50 11-21 (46)
146 2eme_A Zinc finger protein 473 55.4 4 0.00014 21.7 0.9 12 40-51 11-22 (46)
147 2ytr_A Zinc finger protein 347 55.4 4.3 0.00015 21.5 1.0 12 39-50 10-21 (46)
148 2eoz_A Zinc finger protein 473 55.3 2.8 9.5E-05 22.5 0.2 11 40-50 11-21 (46)
149 2em9_A Zinc finger protein 224 55.2 4 0.00014 21.7 0.9 12 40-51 11-22 (46)
150 2em7_A Zinc finger protein 224 55.2 4 0.00014 21.7 0.9 12 40-51 11-22 (46)
151 2ytq_A Zinc finger protein 268 55.2 4.9 0.00017 21.5 1.2 12 40-51 11-22 (46)
152 2eq4_A Zinc finger protein 224 55.1 4.2 0.00014 21.6 0.9 12 40-51 11-22 (46)
153 2ene_A Zinc finger protein 347 55.0 4.1 0.00014 21.7 0.9 11 40-50 11-21 (46)
154 2emh_A Zinc finger protein 484 55.0 3.9 0.00013 21.8 0.8 11 40-50 11-21 (46)
155 2eml_A Zinc finger protein 28 54.9 4.1 0.00014 21.7 0.9 11 40-50 11-21 (46)
156 2emy_A Zinc finger protein 268 54.7 4.1 0.00014 21.7 0.9 11 40-50 11-21 (46)
157 2eq0_A Zinc finger protein 347 54.7 4 0.00014 21.8 0.8 12 39-50 10-21 (46)
158 2eoo_A ZFP-95, zinc finger pro 54.6 4.2 0.00014 21.8 0.9 12 40-51 11-22 (46)
159 2emf_A Zinc finger protein 484 54.6 4.2 0.00014 21.8 0.9 12 40-51 11-22 (46)
160 3u5c_f 40S ribosomal protein S 54.5 6.6 0.00022 28.6 2.2 30 40-69 117-148 (152)
161 2elz_A Zinc finger protein 224 54.2 5.2 0.00018 21.4 1.2 12 40-51 11-22 (46)
162 2ema_A Zinc finger protein 347 54.2 4.3 0.00015 21.6 0.9 12 39-50 10-21 (46)
163 2el4_A Zinc finger protein 268 54.1 4.2 0.00014 21.6 0.8 12 40-51 11-22 (46)
164 2ytm_A Zinc finger protein 28 54.1 4.4 0.00015 21.7 0.9 11 40-50 11-21 (46)
165 3uk3_C Zinc finger protein 217 54.0 4.6 0.00016 22.3 1.0 12 40-51 3-14 (57)
166 3iuf_A Zinc finger protein UBI 53.9 4.1 0.00014 22.6 0.8 12 40-51 6-17 (48)
167 1yui_A GAGA-factor; complex (D 53.9 4.1 0.00014 22.8 0.8 12 39-50 22-33 (54)
168 2eq3_A Zinc finger protein 347 53.8 3.1 0.00011 22.1 0.3 11 40-50 11-21 (46)
169 2ytg_A ZFP-95, zinc finger pro 53.6 4.3 0.00015 21.6 0.8 12 40-51 11-22 (46)
170 2enc_A Zinc finger protein 224 53.5 4.4 0.00015 21.6 0.9 12 40-51 11-22 (46)
171 2epu_A Zinc finger protein 32; 53.4 3.1 0.00011 22.2 0.2 11 40-50 11-21 (45)
172 2emx_A Zinc finger protein 268 53.0 4.5 0.00015 21.3 0.8 11 40-50 9-19 (44)
173 2em5_A ZFP-95, zinc finger pro 52.9 4.6 0.00016 21.6 0.9 12 40-51 11-22 (46)
174 2dmd_A Zinc finger protein 64, 52.9 2.5 8.7E-05 25.7 -0.3 56 40-95 7-75 (96)
175 2yu8_A Zinc finger protein 347 52.8 4.7 0.00016 21.5 0.9 12 40-51 11-22 (46)
176 2emp_A Zinc finger protein 347 52.5 4.7 0.00016 21.5 0.9 11 40-50 11-21 (46)
177 2ytt_A Zinc finger protein 473 52.5 5.4 0.00019 21.3 1.1 12 40-51 11-22 (46)
178 2em8_A Zinc finger protein 224 52.3 4.8 0.00016 21.5 0.9 12 40-51 11-22 (46)
179 2emm_A ZFP-95, zinc finger pro 52.2 4.8 0.00016 21.3 0.9 12 40-51 11-22 (46)
180 2ep2_A Zinc finger protein 484 51.9 4.9 0.00017 21.4 0.9 11 40-50 11-21 (46)
181 2el6_A Zinc finger protein 268 51.6 4.8 0.00016 21.5 0.8 11 40-50 11-21 (46)
182 1l1o_C Replication protein A 7 51.6 5.9 0.0002 29.2 1.5 63 26-96 5-74 (181)
183 2ytk_A Zinc finger protein 347 51.4 5 0.00017 21.3 0.9 11 40-50 11-21 (46)
184 2yso_A ZFP-95, zinc finger pro 51.2 4.9 0.00017 21.4 0.8 12 40-51 11-22 (46)
185 2eox_A Zinc finger protein 473 51.1 3.6 0.00012 21.7 0.2 11 40-50 11-21 (44)
186 2kdx_A HYPA, hydrogenase/ureas 51.1 13 0.00044 25.5 3.2 55 24-92 43-98 (119)
187 1yuz_A Nigerythrin; rubrythrin 51.0 7.8 0.00027 29.3 2.2 25 40-67 170-194 (202)
188 2en8_A Zinc finger protein 224 50.9 5 0.00017 21.2 0.8 11 40-50 11-21 (46)
189 2ytd_A Zinc finger protein 473 50.7 5.3 0.00018 21.3 0.9 11 40-50 11-21 (46)
190 2fiy_A Protein FDHE homolog; F 50.6 6.9 0.00024 31.8 1.9 54 40-94 181-263 (309)
191 1bbo_A Human enhancer-binding 50.3 5.9 0.0002 21.8 1.1 11 41-51 1-11 (57)
192 2eps_A POZ-, at HOOK-, and zin 49.5 6.3 0.00022 22.1 1.1 12 39-50 39-50 (54)
193 2adr_A ADR1; transcription reg 49.5 6.4 0.00022 22.0 1.1 11 41-51 2-12 (60)
194 2ep0_A Zinc finger protein 28 49.0 5.8 0.0002 21.1 0.9 12 40-51 11-22 (46)
195 1zbd_B Rabphilin-3A; G protein 49.0 14 0.00047 26.6 3.1 73 27-101 36-119 (134)
196 4gzn_C ZFP-57, zinc finger pro 49.0 5.4 0.00018 24.2 0.8 12 40-51 3-14 (60)
197 4ayb_P DNA-directed RNA polyme 48.7 3.4 0.00012 26.1 -0.1 26 41-68 3-32 (48)
198 2ysp_A Zinc finger protein 224 48.6 4.1 0.00014 21.7 0.2 11 40-50 11-21 (46)
199 2egq_A FHL1 protein; LIM domai 48.6 5.6 0.00019 24.4 0.8 16 86-101 48-63 (77)
200 2iyb_E Testin, TESS, TES; LIM 47.7 12 0.00042 22.3 2.3 9 43-51 4-12 (65)
201 2epq_A POZ-, at HOOK-, and zin 47.5 6.5 0.00022 20.9 0.9 11 38-48 35-45 (45)
202 1x4s_A Protein FON, zinc finge 47.4 4.6 0.00016 26.2 0.3 13 38-50 23-35 (59)
203 1sp2_A SP1F2; zinc finger, tra 47.4 7.3 0.00025 18.8 1.0 10 41-50 2-13 (31)
204 3qt1_I DNA-directed RNA polyme 46.9 6.2 0.00021 28.6 1.0 31 40-70 23-57 (133)
205 2au3_A DNA primase; zinc ribbo 46.7 4.7 0.00016 32.9 0.4 33 42-76 35-70 (407)
206 2dlk_A Novel protein; ZF-C2H2 45.8 15 0.00053 21.3 2.5 9 41-49 68-76 (79)
207 2eoe_A Zinc finger protein 347 45.6 5 0.00017 21.2 0.3 11 40-50 11-21 (46)
208 2en6_A Zinc finger protein 268 45.5 4.9 0.00017 21.4 0.2 11 40-50 11-21 (46)
209 2bzw_B BCL2-antagonist of cell 45.4 6.2 0.00021 22.2 0.6 17 21-37 9-25 (27)
210 4e2x_A TCAB9; kijanose, tetron 44.7 1.1E+02 0.0037 23.8 8.0 56 40-97 11-66 (416)
211 2zkr_2 60S ribosomal protein L 44.6 6.6 0.00023 27.8 0.8 25 41-68 16-40 (97)
212 2en1_A Zinc finger protein 224 43.9 5.4 0.00018 21.2 0.2 11 40-50 11-21 (46)
213 1f2i_G Fusion of N-terminal 17 43.2 7.5 0.00026 22.5 0.8 13 39-51 47-59 (73)
214 1tfi_A Transcriptional elongat 43.0 23 0.00077 21.6 3.0 13 40-52 8-20 (50)
215 2gqj_A Zinc finger protein KIA 41.9 13 0.00044 23.3 1.8 25 26-51 40-64 (98)
216 1vk6_A NADH pyrophosphatase; 1 41.7 9.4 0.00032 29.7 1.4 29 40-68 106-134 (269)
217 1l8d_A DNA double-strand break 41.2 14 0.00046 24.7 1.9 10 41-50 47-56 (112)
218 1lko_A Rubrerythrin all-iron(I 41.2 21 0.00071 26.5 3.1 41 25-67 133-179 (191)
219 2yqq_A Zinc finger HIT domain- 40.6 8.1 0.00028 24.6 0.7 12 39-50 21-32 (56)
220 2eod_A TNF receptor-associated 40.5 14 0.00047 21.3 1.7 12 39-50 34-46 (66)
221 3po3_S Transcription elongatio 40.4 13 0.00044 27.8 1.9 11 84-94 165-175 (178)
222 2ab3_A ZNF29; zinc finger prot 40.4 6.8 0.00023 18.2 0.2 10 41-50 2-13 (29)
223 1zfd_A SWI5; DNA binding motif 40.0 11 0.00039 18.1 1.1 11 40-50 2-14 (32)
224 1x6e_A Zinc finger protein 24; 39.6 9.6 0.00033 22.2 0.9 13 39-51 12-24 (72)
225 2d9h_A Zinc finger protein 692 39.2 21 0.0007 20.9 2.4 12 39-50 36-47 (78)
226 1dvp_A HRS, hepatocyte growth 38.3 13 0.00045 27.8 1.7 26 42-71 162-189 (220)
227 2lv2_A Insulinoma-associated p 37.8 10 0.00034 24.5 0.8 12 40-51 27-38 (85)
228 2epp_A POZ-, at HOOK-, and zin 37.5 11 0.00039 23.5 1.0 14 39-52 11-24 (66)
229 1h7b_A Anaerobic ribonucleotid 36.7 7.6 0.00026 34.3 0.1 42 26-68 519-567 (605)
230 1x5w_A Zinc finger protein 64, 36.5 11 0.00038 21.7 0.8 12 39-50 7-18 (70)
231 2ctd_A Zinc finger protein 512 36.3 21 0.0007 22.8 2.2 9 40-48 33-41 (96)
232 2lce_A B-cell lymphoma 6 prote 35.7 14 0.00046 21.6 1.1 13 39-51 15-27 (74)
233 2fc7_A ZZZ3 protein; structure 35.1 3.4 0.00012 27.6 -1.9 40 25-67 5-44 (82)
234 2yt9_A Zinc finger-containing 35.1 14 0.00047 22.2 1.1 30 40-69 34-75 (95)
235 2i13_A AART; DNA binding, zinc 35.1 7.3 0.00025 26.8 -0.2 11 40-50 20-30 (190)
236 2jvx_A NF-kappa-B essential mo 34.3 14 0.00048 20.6 0.9 11 40-50 2-12 (28)
237 1k81_A EIF-2-beta, probable tr 34.1 32 0.0011 19.6 2.5 26 43-68 2-30 (36)
238 2k1p_A Zinc finger RAN-binding 33.5 9 0.00031 21.5 0.0 12 57-68 4-15 (33)
239 3u6p_A Formamidopyrimidine-DNA 33.5 20 0.00069 28.2 2.1 25 42-66 246-272 (273)
240 2eln_A Zinc finger protein 406 33.2 14 0.00048 20.5 0.8 12 40-51 8-21 (38)
241 3w0f_A Endonuclease 8-like 3; 33.1 20 0.00068 29.0 2.0 24 43-67 253-281 (287)
242 1va1_A Transcription factor SP 32.9 14 0.0005 18.7 0.8 11 40-50 7-19 (37)
243 2d9k_A FLN29 gene product; zin 32.7 14 0.00049 22.7 0.9 17 37-54 39-55 (75)
244 1p91_A Ribosomal RNA large sub 32.6 21 0.0007 25.8 1.9 24 42-67 3-26 (269)
245 2cot_A Zinc finger protein 435 32.4 17 0.00059 21.3 1.2 13 39-51 16-28 (77)
246 1qxf_A GR2, 30S ribosomal prot 31.9 30 0.001 22.9 2.4 15 81-95 23-37 (66)
247 2lcq_A Putative toxin VAPC6; P 31.8 19 0.00066 25.5 1.6 8 43-50 150-157 (165)
248 2ebt_A Krueppel-like factor 5; 31.7 18 0.00061 21.8 1.2 11 40-50 74-84 (100)
249 1llm_C Chimera of ZIF23-GCN4; 30.7 16 0.00054 22.0 0.8 12 40-51 2-13 (88)
250 2kmk_A Zinc finger protein GFI 30.6 15 0.00053 21.2 0.8 11 40-50 56-66 (82)
251 2js4_A UPF0434 protein BB2007; 30.4 24 0.00083 22.9 1.7 29 40-68 7-35 (70)
252 4gop_C Putative uncharacterize 30.2 27 0.00094 28.5 2.4 33 43-76 310-344 (444)
253 2jr6_A UPF0434 protein NMA0874 30.2 24 0.00083 22.8 1.7 29 40-68 7-35 (68)
254 1x0t_A Ribonuclease P protein 30.2 30 0.001 24.2 2.3 32 20-51 41-75 (120)
255 2hf1_A Tetraacyldisaccharide-1 30.1 24 0.00081 22.9 1.6 28 41-68 8-35 (68)
256 2ct7_A Ring finger protein 31; 30.0 20 0.00069 23.3 1.3 26 43-68 27-52 (86)
257 2dmi_A Teashirt homolog 3; zin 29.8 20 0.00068 22.4 1.2 9 41-49 80-88 (115)
258 3zyq_A Hepatocyte growth facto 29.7 30 0.001 26.2 2.5 24 43-70 166-191 (226)
259 1k3x_A Endonuclease VIII; hydr 29.7 26 0.00087 27.3 2.1 24 43-66 236-261 (262)
260 2i5o_A DNA polymerase ETA; zin 29.7 16 0.00054 21.6 0.7 12 39-50 7-18 (39)
261 3htk_C E3 SUMO-protein ligase 29.6 65 0.0022 26.0 4.5 73 38-119 178-255 (267)
262 1jm7_A BRCA1, breast cancer ty 29.3 24 0.0008 22.7 1.5 81 31-119 11-93 (112)
263 3alr_A Nanos protein; zinc-fin 28.9 18 0.00062 26.0 1.0 22 40-63 70-91 (106)
264 2k3r_A Ribonuclease P protein 28.5 35 0.0012 24.1 2.5 31 21-51 37-70 (123)
265 3m7n_A Putative uncharacterize 28.5 23 0.00079 25.9 1.6 24 43-68 142-165 (179)
266 2dkt_A Ring finger and CHY zin 28.3 40 0.0014 25.0 2.8 31 40-73 82-112 (143)
267 2wbs_A Krueppel-like factor 4; 28.2 19 0.00063 21.3 0.8 12 39-50 63-74 (89)
268 2apo_B Ribosome biogenesis pro 28.1 18 0.00062 23.3 0.8 11 42-52 7-17 (60)
269 1x6h_A Transcriptional repress 28.1 19 0.00065 21.1 0.9 12 40-51 46-57 (86)
270 3v2d_5 50S ribosomal protein L 28.1 12 0.00042 23.8 -0.0 21 41-66 30-50 (60)
271 2cuq_A Four and A half LIM dom 27.9 16 0.00054 22.4 0.5 16 86-101 43-58 (80)
272 1bhi_A CRE-BP1, ATF-2; CRE bin 27.9 20 0.00067 17.9 0.8 11 40-50 5-17 (38)
273 1a1h_A QGSR zinc finger peptid 27.2 20 0.00067 21.2 0.8 11 40-50 61-71 (90)
274 1ee8_A MUTM (FPG) protein; bet 26.7 27 0.00091 27.4 1.7 27 41-67 235-263 (266)
275 1k82_A Formamidopyrimidine-DNA 26.7 51 0.0018 25.7 3.3 25 42-66 241-267 (268)
276 1x6f_A Zinc finger protein 462 26.5 21 0.00071 22.9 0.9 13 39-51 23-35 (88)
277 1a7i_A QCRP2 (LIM1); LIM domai 26.2 46 0.0016 20.4 2.5 11 41-51 7-17 (81)
278 2pk7_A Uncharacterized protein 26.2 25 0.00084 22.8 1.2 30 39-68 6-35 (69)
279 1zfo_A LAsp-1; LIM domain, zin 26.0 25 0.00086 19.0 1.0 8 43-50 5-12 (31)
280 2xzf_A Formamidopyrimidine-DNA 25.3 58 0.002 25.4 3.4 26 42-67 243-270 (271)
281 2jny_A Uncharacterized BCR; st 24.8 34 0.0011 22.1 1.6 30 39-68 8-37 (67)
282 1x4k_A Skeletal muscle LIM-pro 24.5 48 0.0016 19.6 2.3 11 42-52 6-16 (72)
283 1x61_A Thyroid receptor intera 24.2 35 0.0012 20.3 1.6 10 42-51 6-15 (72)
284 2dlq_A GLI-kruppel family memb 24.2 27 0.00093 21.7 1.1 11 40-50 6-16 (124)
285 1yk4_A Rubredoxin, RD; electro 24.1 28 0.00097 21.4 1.1 13 39-51 33-45 (52)
286 2xqn_T Testin, TESS; metal-bin 23.6 57 0.002 21.5 2.7 9 43-51 65-73 (126)
287 2ee8_A Protein ODD-skipped-rel 23.5 29 0.001 21.2 1.1 8 41-48 45-52 (106)
288 1mz9_A Cartilage oligomeric ma 23.0 37 0.0013 20.2 1.5 24 24-47 22-45 (45)
289 1kbe_A Kinase suppressor of RA 22.8 59 0.002 19.6 2.4 22 42-68 15-36 (49)
290 2v3b_B Rubredoxin 2, rubredoxi 22.8 29 0.00098 21.6 1.0 13 39-51 34-46 (55)
291 1pqv_S STP-alpha, transcriptio 22.6 67 0.0023 25.6 3.4 11 41-51 268-278 (309)
292 3j20_W 30S ribosomal protein S 22.6 57 0.002 21.3 2.4 15 81-95 31-45 (63)
293 2csh_A Zinc finger protein 297 22.6 27 0.00094 21.6 0.9 8 41-48 37-44 (110)
294 1joc_A EEA1, early endosomal a 22.6 32 0.0011 24.1 1.3 23 43-69 71-95 (125)
295 1n0z_A ZNF265; zinc finger, RN 22.1 21 0.00071 21.4 0.2 13 56-68 11-25 (45)
296 1g47_A Pinch protein; LIM doma 21.8 44 0.0015 20.0 1.7 11 41-51 11-21 (77)
297 1t1h_A Gspef-atpub14, armadill 21.7 79 0.0027 18.9 2.9 68 39-120 6-75 (78)
298 4rxn_A Rubredoxin; electron tr 21.6 34 0.0012 21.4 1.1 13 39-51 34-46 (54)
299 2c6a_A Ubiquitin-protein ligas 21.5 27 0.00092 21.7 0.6 10 58-67 12-21 (46)
300 3mpx_A FYVE, rhogef and PH dom 21.2 20 0.00069 28.4 0.0 24 42-69 376-401 (434)
301 4dvc_A Thiol:disulfide interch 20.7 13 0.00044 25.0 -1.1 14 36-49 25-38 (184)
302 2kn9_A Rubredoxin; metalloprot 20.6 34 0.0012 23.1 1.0 10 41-50 60-69 (81)
303 2yw8_A RUN and FYVE domain-con 20.3 40 0.0014 21.7 1.3 26 42-71 20-47 (82)
304 1vfy_A Phosphatidylinositol-3- 20.3 41 0.0014 21.2 1.4 26 42-71 12-39 (73)
305 1dx8_A Rubredoxin; electron tr 20.2 36 0.0012 22.1 1.0 13 39-51 38-50 (70)
306 2cu8_A Cysteine-rich protein 2 20.1 46 0.0016 20.1 1.5 10 42-51 10-19 (76)
307 3f6q_B LIM and senescent cell 20.0 69 0.0024 18.6 2.3 10 42-51 12-21 (72)
No 1
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=100.00 E-value=1.8e-48 Score=277.17 Aligned_cols=92 Identities=64% Similarity=1.104 Sum_probs=90.0
Q ss_pred hhhcceeeeeccccccccChhhhHhHHHHHHHhhccccCCCCCCceeEeEEeeeeeecCcceeeecceeeeeccceeeee
Q psy836 6 QAKRTKKVGITGKYGTRYGASLRKMVKKMEITQHAKYTCSFCGKDSMKRSCVGIWSCKRCKRIVAGGAWDSMKRSCVGIW 85 (122)
Q Consensus 6 M~krtkkvgi~gkyG~RYG~slRK~v~kie~~~~aky~Cp~Cgk~~mkR~avGIW~C~~C~~~vAggAy~~~t~~AvtV~ 85 (122)
|+||||||||+||||+|||++|||+|++||++||++|+|||||+++|+|.++|||+
T Consensus 1 Makrtkkvgi~GkyG~RYG~slRK~vkkie~~q~~ky~CpfCgk~~vkR~a~GIW~------------------------ 56 (92)
T 3iz5_m 1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWG------------------------ 56 (92)
T ss_dssp CCSCSSCCTTGGGTTTSSCHHHHHHHHHHHHHHHSCBCCTTTCSSCBEEEETTEEE------------------------
T ss_pred CCcccceeeecCCCcCCcChHHHHHHHHHHHHHhccccCcccCCCeeEecCcceEE------------------------
Confidence 89999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcCeEEeccccccCchHHHHHHHHHHHHHHhhhC
Q psy836 86 SCKRCKRIVAGGAWVYNTTAATSVRSAIRRLREVNEL 122 (122)
Q Consensus 86 s~~rC~~~~AGGAy~~~T~~~~~~~~~i~rl~e~~~~ 122 (122)
|.+|+++||||||+|+||++.+++++|+||+|++|.
T Consensus 57 -C~~Cg~~~AGGAy~~~T~~~~tv~~~irrl~e~~~~ 92 (92)
T 3iz5_m 57 -CKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92 (92)
T ss_dssp -CSSSCCEEECCSSSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -cCCCCCEEeCCcccCCCcHHHHHHHHHHHHHHhhcC
Confidence 789999999999999999999999999999999874
No 2
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=100.00 E-value=2.4e-48 Score=276.63 Aligned_cols=92 Identities=66% Similarity=1.137 Sum_probs=89.9
Q ss_pred hhhcceeeeeccccccccChhhhHhHHHHHHHhhccccCCCCCCceeEeEEeeeeeecCcceeeecceeeeeccceeeee
Q psy836 6 QAKRTKKVGITGKYGTRYGASLRKMVKKMEITQHAKYTCSFCGKDSMKRSCVGIWSCKRCKRIVAGGAWDSMKRSCVGIW 85 (122)
Q Consensus 6 M~krtkkvgi~gkyG~RYG~slRK~v~kie~~~~aky~Cp~Cgk~~mkR~avGIW~C~~C~~~vAggAy~~~t~~AvtV~ 85 (122)
|+||||||||+||||+|||++|||+|++||++||++|+|||||+++|+|.++|||+
T Consensus 1 Makrtkkvgi~GkyG~RYG~slRK~vkkie~~q~~ky~CpfCgk~~vkR~a~GIW~------------------------ 56 (92)
T 3izc_m 1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWT------------------------ 56 (92)
T ss_dssp CCSCSSCCTTGGGTCSCSCHHHHHHHHHHHHHHHSCCCCSSSCSSCCEEEETTEEE------------------------
T ss_pred CCcccceeeecCCCcCCcChhHHHHHHHHHHHHhcCCcCCCCCCceeeecccceEE------------------------
Confidence 89999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcCeEEeccccccCchHHHHHHHHHHHHHHhhhC
Q psy836 86 SCKRCKRIVAGGAWVYNTTAATSVRSAIRRLREVNEL 122 (122)
Q Consensus 86 s~~rC~~~~AGGAy~~~T~~~~~~~~~i~rl~e~~~~ 122 (122)
|.+|+++||||||+|+||++.+++++|+||+|++|.
T Consensus 57 -C~~C~~~~AGGAy~~~T~~~~tv~~~irrl~e~~~~ 92 (92)
T 3izc_m 57 -CSCCKKTVAGGAYTVSTAAAATVRSTIRRLREMVEA 92 (92)
T ss_dssp -CTTTCCEEECCSSSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -cCCCCCEEeCCcccCCCcHHHHHHHHHHHHHHhhcC
Confidence 789999999999999999999999999999999874
No 3
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=100.00 E-value=4.8e-48 Score=279.86 Aligned_cols=92 Identities=63% Similarity=1.119 Sum_probs=88.9
Q ss_pred hhhcceeeeeccccccccChhhhHhHHHHHHHhhccccCCCCCCceeEeEEeeeeeecCcceeeecceeeeeccceeeee
Q psy836 6 QAKRTKKVGITGKYGTRYGASLRKMVKKMEITQHAKYTCSFCGKDSMKRSCVGIWSCKRCKRIVAGGAWDSMKRSCVGIW 85 (122)
Q Consensus 6 M~krtkkvgi~gkyG~RYG~slRK~v~kie~~~~aky~Cp~Cgk~~mkR~avGIW~C~~C~~~vAggAy~~~t~~AvtV~ 85 (122)
|+||||||||+||||+|||++|||+|++||++||++|+|||||+++|+|.++|||+
T Consensus 1 MakrTkkvgi~GkyGtRYGaslRK~vkkIE~~q~aky~CpfCgk~~vKR~a~GIW~------------------------ 56 (103)
T 4a17_Y 1 MAKRTQKVGITRKYGTRYGASLRKVVKKFEITQHAKYGCPFCGKVAVKRAAVGIWK------------------------ 56 (103)
T ss_dssp -CCCCSSCGGGGGGTTTTCHHHHHHHHHHHHHHHSCEECTTTCCEEEEEEETTEEE------------------------
T ss_pred CCcccceeeecCCCcCCCChhHHHHHHHHHHHhhcCCCCCCCCCceeeecCcceEE------------------------
Confidence 99999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcCeEEeccccccCchHHHHHHHHHHHHHHhhhC
Q psy836 86 SCKRCKRIVAGGAWVYNTTAATSVRSAIRRLREVNEL 122 (122)
Q Consensus 86 s~~rC~~~~AGGAy~~~T~~~~~~~~~i~rl~e~~~~ 122 (122)
|.+|+++||||||+|+||++.+++++|+||||++|+
T Consensus 57 -C~kCg~~~AGGAy~~~T~~a~tv~~~irrl~e~~~~ 92 (103)
T 4a17_Y 57 -CKPCKKIIAGGAWELTTPPAVTAKTTMNRLKKLQEE 92 (103)
T ss_dssp -ETTTTEEEECCSSCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred -cCCCCCEEeCCcccCCCcHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999873
No 4
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=100.00 E-value=1.1e-44 Score=266.68 Aligned_cols=93 Identities=32% Similarity=0.658 Sum_probs=72.0
Q ss_pred hhhhhcceeeeeccccccccChhhhHhHHHHHHHhhccccCCCCCCceeEeEEeeeeeecCcceeeecceeeeeccceee
Q psy836 4 TYQAKRTKKVGITGKYGTRYGASLRKMVKKMEITQHAKYTCSFCGKDSMKRSCVGIWSCKRCKRIVAGGAWDSMKRSCVG 83 (122)
Q Consensus 4 ~~M~krtkkvgi~gkyG~RYG~slRK~v~kie~~~~aky~Cp~Cgk~~mkR~avGIW~C~~C~~~vAggAy~~~t~~Avt 83 (122)
+.|++|||||||+||||+|||++|||+|++||++||++|+|||||++.|+|.++|||+
T Consensus 23 ~~MakrtKkVGi~GkyG~RYGaslRK~vkkiE~~q~akytCPfCGk~~vKR~avGIW~---------------------- 80 (116)
T 3cc2_Z 23 TTMASKSGKTGSSGRFGARYGRVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQ---------------------- 80 (116)
T ss_dssp -----------CGGGGTTCSCHHHHHHHHHHHHHHHSCEECSSSCCEEEEEEETTEEE----------------------
T ss_pred HHHHhccCccccccccccccchHHHHHHHHHHHHhccCCcCCCCCCceeEecCceeEE----------------------
Confidence 3599999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCcCeEEeccccccCchHHHHHHHHHHHHHHhhh
Q psy836 84 IWSCKRCKRIVAGGAWVYNTTAATSVRSAIRRLREVNE 121 (122)
Q Consensus 84 V~s~~rC~~~~AGGAy~~~T~~~~~~~~~i~rl~e~~~ 121 (122)
|..|+++||||||+|+||++.+++++|+||+|++|
T Consensus 81 ---C~~Cgk~fAGGAy~~~T~~~~t~~~~irrl~e~~~ 115 (116)
T 3cc2_Z 81 ---CSYCDYKFTGGSYKPETPGGKTVRRSIRAALSEDE 115 (116)
T ss_dssp ---ETTTCCEEECCSSSSSCHHHHHHHHC---------
T ss_pred ---CCCCCCEEECCCcccccchhhhHHHHHHHHHHhcc
Confidence 78999999999999999999999999999999977
No 5
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=5.5e-43 Score=245.03 Aligned_cols=82 Identities=40% Similarity=0.808 Sum_probs=72.9
Q ss_pred hhhcceeeeeccccccccChhhhHhHHHHHHHhhccccCCCCCCceeEeEEeeeeeecCcceeeecceeeeeccceeeee
Q psy836 6 QAKRTKKVGITGKYGTRYGASLRKMVKKMEITQHAKYTCSFCGKDSMKRSCVGIWSCKRCKRIVAGGAWDSMKRSCVGIW 85 (122)
Q Consensus 6 M~krtkkvgi~gkyG~RYG~slRK~v~kie~~~~aky~Cp~Cgk~~mkR~avGIW~C~~C~~~vAggAy~~~t~~AvtV~ 85 (122)
|+ |||||||+||||+|||++|||+|++||++||++|+|||||+++|+|.++|||+
T Consensus 1 Ma-~tkkvgi~GkyG~RYG~slRK~vkkie~~q~~ky~CpfCGk~~vkR~a~GIW~------------------------ 55 (83)
T 3j21_i 1 MS-GTKKVGSAGRFGARYGLKIRRRVAAVEAKMRQKHTCPVCGRKAVKRISTGIWQ------------------------ 55 (83)
T ss_dssp ------CCCSGGGGTTCSCHHHHHHHHHHHHHHHSCBCCSSSCSSCEEEEETTEEE------------------------
T ss_pred CC-ccceeeecCCCcCCcChhHHHHHHHHHHHhhcccCCCCCCCceeEecCcCeEE------------------------
Confidence 88 99999999999999999999999999999999999999999999999999999
Q ss_pred eecCcCeEEeccccccCchHHHHHHHHH
Q psy836 86 SCKRCKRIVAGGAWVYNTTAATSVRSAI 113 (122)
Q Consensus 86 s~~rC~~~~AGGAy~~~T~~~~~~~~~i 113 (122)
|.+|+++||||||+|+||++.++.++|
T Consensus 56 -C~kCg~~~AGGAy~~~T~~~~t~~r~~ 82 (83)
T 3j21_i 56 -CQKCGATFAGGAYLPVTPAGKAVRRIT 82 (83)
T ss_dssp -ETTTCCEEECCSSSSSCHHHHHHHHSC
T ss_pred -cCCCCCEEeCCccccCccHhhhhhhcc
Confidence 788888899999999999999887654
No 6
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=100.00 E-value=8.1e-38 Score=214.15 Aligned_cols=72 Identities=35% Similarity=0.771 Sum_probs=68.6
Q ss_pred eccccccccChhhhHhHHHHHHHhhccccCCCCCCceeEeEEeeeeeecCcceeeecceeeeeccceeeeee
Q psy836 15 ITGKYGTRYGASLRKMVKKMEITQHAKYTCSFCGKDSMKRSCVGIWSCKRCKRIVAGGAWDSMKRSCVGIWS 86 (122)
Q Consensus 15 i~gkyG~RYG~slRK~v~kie~~~~aky~Cp~Cgk~~mkR~avGIW~C~~C~~~vAggAy~~~t~~AvtV~s 86 (122)
|+||||+|||++|||+|++||++||++|+|||||++.|+|.++|||+|++|++++|||||+++|.+++++++
T Consensus 1 i~Gk~G~RYG~slRK~vkkie~~q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGGAy~~~T~~~~t~~~ 72 (73)
T 1ffk_W 1 PTGRFGPRYGLKIRVRVRDVEIKHKKKYKCPVCGFPKLKRASTSIWVCGHCGYKIAGGAYTPETVAGKAVMK 72 (73)
T ss_pred CCcccccccChhHHHHHHHHHHhcccCccCCCCCCceeEEEEeEEEECCCCCcEEECCCccccccceEEEec
Confidence 689999999999999999999999999999999999999999999999999999999999999999888865
No 7
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=100.00 E-value=1.4e-37 Score=216.11 Aligned_cols=81 Identities=32% Similarity=0.701 Sum_probs=70.4
Q ss_pred ccccccccChhhhHhHHHHHHHhhccccCCCCCCceeEeEEeeeeeecCcceeeecceeeeeccceeeeeeecCcCeEEe
Q psy836 16 TGKYGTRYGASLRKMVKKMEITQHAKYTCSFCGKDSMKRSCVGIWSCKRCKRIVAGGAWDSMKRSCVGIWSCKRCKRIVA 95 (122)
Q Consensus 16 ~gkyG~RYG~slRK~v~kie~~~~aky~Cp~Cgk~~mkR~avGIW~C~~C~~~vAggAy~~~t~~AvtV~s~~rC~~~~A 95 (122)
+||||+|||++|||+|++||++||.+|+|||||++.++|.++|||+ |..|+++||
T Consensus 2 ~gk~g~rYG~~lRk~vk~ie~~q~~~y~Cp~CG~~~v~r~atGiW~-------------------------C~~Cg~~~a 56 (83)
T 1vq8_Z 2 SGRFGARYGRVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQ-------------------------CSYCDYKFT 56 (83)
T ss_dssp GGGGTTCSCHHHHHHHHHHHHHHHSCEECSSSCCEEEEEEETTEEE-------------------------ETTTCCEEE
T ss_pred CCccccccchHHHHHHHHHHHhccccCcCCCCCCcceeccCCCeEE-------------------------CCCCCCEec
Confidence 6999999999999999999999999999999999999999999999 788999999
Q ss_pred ccccccCchHHHHHHHHHHHHHHhhh
Q psy836 96 GGAWVYNTTAATSVRSAIRRLREVNE 121 (122)
Q Consensus 96 GGAy~~~T~~~~~~~~~i~rl~e~~~ 121 (122)
||||+|+||++.+++++|+||+|++|
T Consensus 57 ggay~~~t~~~~~~~~~i~r~~~~~~ 82 (83)
T 1vq8_Z 57 GGSYKPETPGGKTVRRSIRAALSEDE 82 (83)
T ss_dssp CCSSSSSCHHHHHHHHC---------
T ss_pred CCEecccchHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999987
No 8
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=100.00 E-value=3.2e-38 Score=216.02 Aligned_cols=71 Identities=63% Similarity=1.190 Sum_probs=60.2
Q ss_pred ccccccccChhhhHhHHHHHHHhhccccCCCCCCceeEeEEeeeeeecCcceeeecceeeeeccceeeeeeecCcCeEEe
Q psy836 16 TGKYGTRYGASLRKMVKKMEITQHAKYTCSFCGKDSMKRSCVGIWSCKRCKRIVAGGAWDSMKRSCVGIWSCKRCKRIVA 95 (122)
Q Consensus 16 ~gkyG~RYG~slRK~v~kie~~~~aky~Cp~Cgk~~mkR~avGIW~C~~C~~~vAggAy~~~t~~AvtV~s~~rC~~~~A 95 (122)
+||||+|||++|||+|++||++||++|+|||||+++|+|.++|||+| .+|+++||
T Consensus 1 ~GkyG~RYG~slRK~vkkie~~q~~ky~C~fCgk~~vkR~a~GIW~C-------------------------~~C~~~~A 55 (72)
T 3jyw_9 1 TGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTC-------------------------SCCKKTVA 55 (72)
T ss_dssp CTTTTTSSCHHHHTTTHHHHHHHHSCBCCSSCCSSCBSBCSSSCBCC-------------------------SSSCCCCC
T ss_pred CCcccCccChhHHHHHHHHHHHhccCccCCCCCCceeEecCCCeEEC-------------------------CCCCCEEe
Confidence 58999999999999999999999999999999999999999999995 55555566
Q ss_pred ccccccCchHHHHHHH
Q psy836 96 GGAWVYNTTAATSVRS 111 (122)
Q Consensus 96 GGAy~~~T~~~~~~~~ 111 (122)
||||+|+||++.+|+|
T Consensus 56 GGAy~~~T~~~~tv~s 71 (72)
T 3jyw_9 56 GGAYTVSTAAAATVRS 71 (72)
T ss_dssp CSSSSSCCHHHHHHTT
T ss_pred CCccccCCccceeeec
Confidence 6666666666666554
No 9
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=99.35 E-value=8e-14 Score=95.22 Aligned_cols=51 Identities=29% Similarity=0.574 Sum_probs=45.8
Q ss_pred eEEeeeeeecCcceeeecceeeeeccceeeeeeecCcCeEEeccccccCchHHHHHHH
Q psy836 54 RSCVGIWSCKRCKRIVAGGAWDSMKRSCVGIWSCKRCKRIVAGGAWVYNTTAATSVRS 111 (122)
Q Consensus 54 R~avGIW~C~~C~~~vAggAy~~~t~~AvtV~s~~rC~~~~AGGAy~~~T~~~~~~~~ 111 (122)
-.+...+.|++|++. ...+.+++||+|.+|+++||||||+|+||++.++++
T Consensus 22 ~~q~~ky~C~fCgk~-------~vkR~a~GIW~C~~C~~~~AGGAy~~~T~~~~t~~~ 72 (73)
T 1ffk_W 22 IKHKKKYKCPVCGFP-------KLKRASTSIWVCGHCGYKIAGGAYTPETVAGKAVMK 72 (73)
T ss_pred HhcccCccCCCCCCc-------eeEEEEeEEEECCCCCcEEECCCccccccceEEEec
Confidence 346677999999995 789999999999999999999999999999988765
No 10
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.34 E-value=4.2e-08 Score=62.96 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=31.7
Q ss_pred hHHHHHHHhhccccCCCCCCceeEeEEeeeeeecCccee
Q psy836 30 MVKKMEITQHAKYTCSFCGKDSMKRSCVGIWSCKRCKRI 68 (122)
Q Consensus 30 ~v~kie~~~~aky~Cp~Cgk~~mkR~avGIW~C~~C~~~ 68 (122)
++.+||..+..+|.||.||.. .++|||.|.+||.+
T Consensus 3 ~~~eie~r~~~k~iCpkC~a~----~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 3 RFPEAEARIFKKYVCLRCGAT----NPWGAKKCRKCGYK 37 (51)
T ss_dssp CCTTHHHHSSSEEECTTTCCE----ECTTCSSCSSSSSC
T ss_pred cHHHHHHHHhCCccCCCCCCc----CCCCceecCCCCCc
Confidence 357899999999999999986 89999999999876
No 11
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=97.63 E-value=3.4e-06 Score=57.44 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=19.9
Q ss_pred Ccceeeecceeeeeccceeeeee
Q psy836 64 RCKRIVAGGAWDSMKRSCVGIWS 86 (122)
Q Consensus 64 ~C~~~vAggAy~~~t~~AvtV~s 86 (122)
+||++||||||+++|.+|++|+|
T Consensus 49 ~C~~~~AGGAy~~~T~~~~tv~s 71 (72)
T 3jyw_9 49 CCKKTVAGGAYTVSTAAAATVRS 71 (72)
T ss_dssp SSCCCCCCSSSSSCCHHHHHHTT
T ss_pred CCCCEEeCCccccCCccceeeec
Confidence 04678999999999999999976
No 12
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=97.61 E-value=3.1e-06 Score=59.99 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=23.2
Q ss_pred cceeeecceeeeeccceeeeeeecC
Q psy836 65 CKRIVAGGAWDSMKRSCVGIWSCKR 89 (122)
Q Consensus 65 C~~~vAggAy~~~t~~AvtV~s~~r 89 (122)
||++||||||+|+|+++++|++.|+
T Consensus 60 Cg~~~AGGAy~~~T~~~~tv~~~ir 84 (92)
T 3iz5_m 60 CGKVKAGGAYTMNTASAVTVRSTIR 84 (92)
T ss_dssp SCCEEECCSSSSCCHHHHHHHHHHH
T ss_pred CCCEEeCCcccCCCcHHHHHHHHHH
Confidence 7899999999999999999988775
No 13
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=97.61 E-value=3.1e-06 Score=60.04 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=23.2
Q ss_pred cceeeecceeeeeccceeeeeeecC
Q psy836 65 CKRIVAGGAWDSMKRSCVGIWSCKR 89 (122)
Q Consensus 65 C~~~vAggAy~~~t~~AvtV~s~~r 89 (122)
|+++||||||+|+|.++++|++.|+
T Consensus 60 C~~~~AGGAy~~~T~~~~tv~~~ir 84 (92)
T 3izc_m 60 CKKTVAGGAYTVSTAAAATVRSTIR 84 (92)
T ss_dssp TCCEEECCSSSSCCHHHHHHHHHHH
T ss_pred CCCEEeCCcccCCCcHHHHHHHHHH
Confidence 7899999999999999999988775
No 14
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=97.53 E-value=5e-06 Score=60.07 Aligned_cols=28 Identities=36% Similarity=0.653 Sum_probs=24.2
Q ss_pred cCcceeeecceeeeeccceeeeeeecCc
Q psy836 63 KRCKRIVAGGAWDSMKRSCVGIWSCKRC 90 (122)
Q Consensus 63 ~~C~~~vAggAy~~~t~~AvtV~s~~rC 90 (122)
++|+++||||||+|+|+++++|+|.++-
T Consensus 58 ~kCg~~~AGGAy~~~T~~a~tv~~~irr 85 (103)
T 4a17_Y 58 KPCKKIIAGGAWELTTPPAVTAKTTMNR 85 (103)
T ss_dssp TTTTEEEECCSSCSSCHHHHHHHHHHHH
T ss_pred CCCCCEEeCCcccCCCcHHHHHHHHHHH
Confidence 0389999999999999999999887764
No 15
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.02 E-value=7.1e-05 Score=52.08 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=19.5
Q ss_pred cCcceeeecceeeeeccceeeee
Q psy836 63 KRCKRIVAGGAWDSMKRSCVGIW 85 (122)
Q Consensus 63 ~~C~~~vAggAy~~~t~~AvtV~ 85 (122)
++|+++||||||+|+|.+|+++.
T Consensus 57 ~kCg~~~AGGAy~~~T~~~~t~~ 79 (83)
T 3j21_i 57 QKCGATFAGGAYLPVTPAGKAVR 79 (83)
T ss_dssp TTTCCEEECCSSSSSCHHHHHHH
T ss_pred CCCCCEEeCCccccCccHhhhhh
Confidence 03789999999999999998763
No 16
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=96.97 E-value=6.1e-05 Score=51.85 Aligned_cols=25 Identities=16% Similarity=0.334 Sum_probs=20.3
Q ss_pred cceeeecceeeeeccceeeeeeecC
Q psy836 65 CKRIVAGGAWDSMKRSCVGIWSCKR 89 (122)
Q Consensus 65 C~~~vAggAy~~~t~~AvtV~s~~r 89 (122)
|++++|||||+++|.+++++++.|+
T Consensus 51 Cg~~~aggay~~~t~~~~~~~~~i~ 75 (83)
T 1vq8_Z 51 CDYKFTGGSYKPETPGGKTVRRSIR 75 (83)
T ss_dssp TCCEEECCSSSSSCHHHHHHHHC--
T ss_pred CCCEecCCEecccchHHHHHHHHHH
Confidence 3458999999999999999887764
No 17
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=96.86 E-value=8.9e-05 Score=54.41 Aligned_cols=25 Identities=16% Similarity=0.334 Sum_probs=21.2
Q ss_pred cceeeecceeeeeccceeeeeeecC
Q psy836 65 CKRIVAGGAWDSMKRSCVGIWSCKR 89 (122)
Q Consensus 65 C~~~vAggAy~~~t~~AvtV~s~~r 89 (122)
|+++||||||+++|.+++++++.|+
T Consensus 84 Cgk~fAGGAy~~~T~~~~t~~~~ir 108 (116)
T 3cc2_Z 84 CDYKFTGGSYKPETPGGKTVRRSIR 108 (116)
T ss_dssp TCCEEECCSSSSSCHHHHHHHHC--
T ss_pred CCCEEECCCcccccchhhhHHHHHH
Confidence 6789999999999999999887764
No 18
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=94.43 E-value=0.023 Score=35.46 Aligned_cols=29 Identities=21% Similarity=0.587 Sum_probs=22.5
Q ss_pred ccccCCCCCCceeEeEEeeeeeecCccee
Q psy836 40 AKYTCSFCGKDSMKRSCVGIWSCKRCKRI 68 (122)
Q Consensus 40 aky~Cp~Cgk~~mkR~avGIW~C~~C~~~ 68 (122)
..-.||.||...+-...-..|.|++||.+
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred ecccCCCCCCceEEecCCCeEECCCCCCE
Confidence 34459999997666666788998888876
No 19
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=94.17 E-value=0.019 Score=36.52 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=28.5
Q ss_pred ccccCCCCCCcee-EeEEeeeeeecCcceeeecceeee
Q psy836 40 AKYTCSFCGKDSM-KRSCVGIWSCKRCKRIVAGGAWDS 76 (122)
Q Consensus 40 aky~Cp~Cgk~~m-kR~avGIW~C~~C~~~vAggAy~~ 76 (122)
....||.||...+ .-.+.|.+.|..||.+++....+.
T Consensus 10 ~~~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e~~iD~ 47 (58)
T 1dl6_A 10 PRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDV 47 (58)
T ss_dssp SCCSBTTBSSSCCEECSSSCCEECTTTCCEECCSCCCC
T ss_pred ccccCcCCCCCceeEeCCCCeEEeCCCCCEEecccccc
Confidence 3457999998544 445789999999999998876543
No 20
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=93.21 E-value=0.037 Score=33.40 Aligned_cols=36 Identities=17% Similarity=0.432 Sum_probs=26.4
Q ss_pred ccccCCCCCCcee-EeEEeeeeeecCcceeeecceee
Q psy836 40 AKYTCSFCGKDSM-KRSCVGIWSCKRCKRIVAGGAWD 75 (122)
Q Consensus 40 aky~Cp~Cgk~~m-kR~avGIW~C~~C~~~vAggAy~ 75 (122)
..+.||.||...+ .-.+.|.+.|+.||.++.....+
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~id 40 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVIEENIID 40 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBCCCCCCC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcccccccc
Confidence 3568999998444 44467999999999987655433
No 21
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=91.89 E-value=1.6 Score=28.16 Aligned_cols=61 Identities=11% Similarity=0.232 Sum_probs=37.1
Q ss_pred cCCCCCCceeEeEEee--eeeecCcceeeecceeeeeccceeeeeeecCcCeEEeccccccCchHHHHHHHHHHHHHHhh
Q psy836 43 TCSFCGKDSMKRSCVG--IWSCKRCKRIVAGGAWDSMKRSCVGIWSCKRCKRIVAGGAWVYNTTAATSVRSAIRRLREVN 120 (122)
Q Consensus 43 ~Cp~Cgk~~mkR~avG--IW~C~~C~~~vAggAy~~~t~~AvtV~s~~rC~~~~AGGAy~~~T~~~~~~~~~i~rl~e~~ 120 (122)
+||+||...+.+...- .+. +|... +-..|--|.|..||+.+.. ...+..+...+..|+...
T Consensus 4 ~Cp~Cg~~~l~~~~~~~~~~~---------~G~~~--~I~~Vp~~~C~~CGE~~~~------~e~~~~~~~~~~~f~~~v 66 (78)
T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTF---------RGRKT--VLKGIHGLYCVHCEESIMN------KEESDAFMAQVKAFRASV 66 (78)
T ss_dssp BCTTTSSSBEEEEEEEEEEEE---------TTEEE--EEEEEEEEEETTTCCEECC------HHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCeeEeEEEEEEEEE---------CCEEE--EEcCceeEECCCCCCEEEC------HHHHHHHHHHHHHHHHHH
Confidence 6999998766544332 222 22221 2346677889999998754 445555666666666543
No 22
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=91.22 E-value=0.085 Score=33.41 Aligned_cols=30 Identities=23% Similarity=0.524 Sum_probs=21.0
Q ss_pred hccccCCCCCCceeEeEEeeeeeecCccee
Q psy836 39 HAKYTCSFCGKDSMKRSCVGIWSCKRCKRI 68 (122)
Q Consensus 39 ~aky~Cp~Cgk~~mkR~avGIW~C~~C~~~ 68 (122)
+....||.||...+--...+.|.|++|+.+
T Consensus 16 ~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 16 RKHRFCPRCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp CSSCCCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred EccccCcCCCCceeEeccCCEEECCCCCCE
Confidence 346789999985432244578898888876
No 23
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=88.57 E-value=0.21 Score=40.71 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=27.0
Q ss_pred HHHhhccccCCCCCC--c-eeEeEEeeeeeecCcceeeecce
Q psy836 35 EITQHAKYTCSFCGK--D-SMKRSCVGIWSCKRCKRIVAGGA 73 (122)
Q Consensus 35 e~~~~aky~Cp~Cgk--~-~mkR~avGIW~C~~C~~~vAggA 73 (122)
.......+.||.||. + -+.....|.--|..||.++...-
T Consensus 15 ~~~l~~~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e~~ 56 (345)
T 4bbr_M 15 GPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKL 56 (345)
T ss_dssp -------CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEESCC
T ss_pred CcccccCCcCCCCCCCCCceeEECCCCcEEeCCCCCCccCcc
Confidence 334445778999996 3 46777999999999999998653
No 24
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=87.86 E-value=0.14 Score=32.51 Aligned_cols=24 Identities=25% Similarity=0.630 Sum_probs=19.4
Q ss_pred eeeecCcceeeecceeeeeccceeeeeeecCcCeE
Q psy836 59 IWSCKRCKRIVAGGAWDSMKRSCVGIWSCKRCKRI 93 (122)
Q Consensus 59 IW~C~~C~~~vAggAy~~~t~~AvtV~s~~rC~~~ 93 (122)
...|++|+.. .++++|+|.+||.+
T Consensus 14 k~iCpkC~a~-----------~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 14 KYVCLRCGAT-----------NPWGAKKCRKCGYK 37 (51)
T ss_dssp EEECTTTCCE-----------ECTTCSSCSSSSSC
T ss_pred CccCCCCCCc-----------CCCCceecCCCCCc
Confidence 4679999987 55777789999876
No 25
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=87.30 E-value=0.45 Score=36.06 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=22.4
Q ss_pred cCCCCCCceeEeEEeeeeeecCcceeeecceeeeec
Q psy836 43 TCSFCGKDSMKRSCVGIWSCKRCKRIVAGGAWDSMK 78 (122)
Q Consensus 43 ~Cp~Cgk~~mkR~avGIW~C~~C~~~vAggAy~~~t 78 (122)
-||-|.|.-. -..-|.|.|.+|+.. .--.|-|..
T Consensus 44 ACp~CnKKV~-~~~~g~~~CekC~~~-~~~~~RYil 77 (172)
T 3u50_C 44 RCTCQGKSVL-KYHGDSFFCESCQQF-INPQVHLML 77 (172)
T ss_dssp ECTTSCCCEE-EETTTEEEETTTTEE-CCCEEEECE
T ss_pred hchhhCCEee-eCCCCeEECCCCCCC-CCceEEEEE
Confidence 3888877654 345688888888887 544454433
No 26
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=85.30 E-value=0.68 Score=34.31 Aligned_cols=33 Identities=18% Similarity=0.587 Sum_probs=19.4
Q ss_pred cCCC--CCCceeEeEEeeeeeecCcceeeecceeee
Q psy836 43 TCSF--CGKDSMKRSCVGIWSCKRCKRIVAGGAWDS 76 (122)
Q Consensus 43 ~Cp~--Cgk~~mkR~avGIW~C~~C~~~vAggAy~~ 76 (122)
-||. |.|.-. -..-|.|.|.+|+..+..--|-|
T Consensus 45 aC~~~~CnKKv~-~~~~g~~~CekC~~~~~~~~~ry 79 (181)
T 1l1o_C 45 ACPTQDCNKKVI-DQQNGLYRCEKCDTEFPNFKYRM 79 (181)
T ss_dssp BCCSTTCCCBCE-EETTTEEEETTTTEEESSCCEEE
T ss_pred CCCchhcCCccc-cCCCCeEECCCCCCcCCCceEEE
Confidence 4777 776533 33456777777776654444443
No 27
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=84.80 E-value=0.15 Score=30.37 Aligned_cols=30 Identities=23% Similarity=0.541 Sum_probs=18.4
Q ss_pred ccccCCCCCCce-----eEeEEe--eeeeecCcceee
Q psy836 40 AKYTCSFCGKDS-----MKRSCV--GIWSCKRCKRIV 69 (122)
Q Consensus 40 aky~Cp~Cgk~~-----mkR~av--GIW~C~~C~~~v 69 (122)
.+|.|+.||+.- +.+.-. ..+.|..|++.+
T Consensus 13 k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f 49 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEV 49 (62)
T ss_dssp SEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBC
T ss_pred CCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCcc
Confidence 578999999842 223322 346777777653
No 28
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=84.32 E-value=3.7 Score=28.05 Aligned_cols=52 Identities=17% Similarity=0.360 Sum_probs=28.6
Q ss_pred HhhccccCCCCCCce-eEeEEeeeeeecCcceeeecceeeeeccceeeeeeecCcCeEEeccccccCchHHHH
Q psy836 37 TQHAKYTCSFCGKDS-MKRSCVGIWSCKRCKRIVAGGAWDSMKRSCVGIWSCKRCKRIVAGGAWVYNTTAATS 108 (122)
Q Consensus 37 ~~~aky~Cp~Cgk~~-mkR~avGIW~C~~C~~~vAggAy~~~t~~AvtV~s~~rC~~~~AGGAy~~~T~~~~~ 108 (122)
..-..|.||||+... +.=. +....-++.-+|..|+..+.-..-.++.|.-.+
T Consensus 19 ~L~t~F~CPfCnh~~sV~vk--------------------idk~~~~g~l~C~~Cg~~~~~~i~~L~epiDVY 71 (85)
T 1wii_A 19 TLETQFTCPFCNHEKSCDVK--------------------MDRARNTGVISCTVCLEEFQTPITYLSEPVDVY 71 (85)
T ss_dssp CCSSCCCCTTTCCSSCEEEE--------------------EETTTTEEEEEESSSCCEEEEECCSSCCTTHHH
T ss_pred CCCCeEcCCCCCCCCeEEEE--------------------EEccCCEEEEEcccCCCeEEeccCccCcchhhH
Confidence 344679999999883 2111 111222344457778777766444444444433
No 29
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=81.96 E-value=0.19 Score=33.33 Aligned_cols=30 Identities=23% Similarity=0.522 Sum_probs=20.6
Q ss_pred hhccccCCCCCCceeEeEEeeeeeecCccee
Q psy836 38 QHAKYTCSFCGKDSMKRSCVGIWSCKRCKRI 68 (122)
Q Consensus 38 ~~aky~Cp~Cgk~~mkR~avGIW~C~~C~~~ 68 (122)
+.-.|.|+.||..--....-.| +|+.||..
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~i-rCp~CG~R 54 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAV-RCKDCGHR 54 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTT-CCSSSCCC
T ss_pred ceEEEECCCCCCcceeCCCCCc-cCCCCCce
Confidence 5678999999998322222233 88888874
No 30
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=81.74 E-value=0.68 Score=31.51 Aligned_cols=21 Identities=29% Similarity=0.708 Sum_probs=18.6
Q ss_pred hccccCCCCCCceeEeEEeee
Q psy836 39 HAKYTCSFCGKDSMKRSCVGI 59 (122)
Q Consensus 39 ~aky~Cp~Cgk~~mkR~avGI 59 (122)
-.+..||.||-..++|.++.+
T Consensus 28 ~~k~FCp~CGn~TL~Rvsvsv 48 (79)
T 2con_A 28 MNRVFCGHCGNKTLKKVSVTI 48 (79)
T ss_dssp SSCCSCSSSCCSCCEEEECBC
T ss_pred cccccccccCcccceEEEEEE
Confidence 367899999999999999866
No 31
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=81.63 E-value=0.57 Score=35.51 Aligned_cols=28 Identities=25% Similarity=0.494 Sum_probs=18.6
Q ss_pred cccCCCCCC-ceeEeEEeeeeeecCccee
Q psy836 41 KYTCSFCGK-DSMKRSCVGIWSCKRCKRI 68 (122)
Q Consensus 41 ky~Cp~Cgk-~~mkR~avGIW~C~~C~~~ 68 (122)
+-.||.||. +.+.--.-|-|.|..||..
T Consensus 14 ~~~CP~Cg~~d~~~~~~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 14 HIPCDNCGSSDGNSLFSDGHTFCYVCEKW 42 (255)
T ss_dssp EECCSSSCCSSCEEEETTSCEEETTTCCE
T ss_pred CCcCCCCCCCCCceEeCCCCeecccCCCc
Confidence 457999988 3433333456888888864
No 32
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=81.57 E-value=3.7 Score=27.62 Aligned_cols=47 Identities=13% Similarity=0.265 Sum_probs=26.3
Q ss_pred cCCCCCCceeEeEEeeeeeecCcceeeecceeeeeccceeeeeeecCcCeEEeccc
Q psy836 43 TCSFCGKDSMKRSCVGIWSCKRCKRIVAGGAWDSMKRSCVGIWSCKRCKRIVAGGA 98 (122)
Q Consensus 43 ~Cp~Cgk~~mkR~avGIW~C~~C~~~vAggAy~~~t~~AvtV~s~~rC~~~~AGGA 98 (122)
.||+||...+...-.- -+ ..+-|- ..+-.+|..+-|..||..+....
T Consensus 4 ~Cp~Cg~~~~~~~~~~-~~-----~~~kg~---~~~v~~v~~~~C~~CGE~~~d~e 50 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIKD-IP-----YTFRGR---KTVLKGIHGLYCVHCEESIMNKE 50 (133)
T ss_dssp BCTTTSSSBEEEEEEE-EE-----EEETTE---EEEEEEEEEEEESSSSCEECCHH
T ss_pred CCCcCCCCceeeceEE-EE-----EEECCE---EEEECCCceeECCCCCCEeecHH
Confidence 6999998755332211 11 011111 12233567888999999986543
No 33
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=80.92 E-value=1.7 Score=26.59 Aligned_cols=13 Identities=46% Similarity=0.920 Sum_probs=8.8
Q ss_pred cccCCCCCCceeE
Q psy836 41 KYTCSFCGKDSMK 53 (122)
Q Consensus 41 ky~Cp~Cgk~~mk 53 (122)
...||.||...+.
T Consensus 15 ~~~Cp~Cg~~~~~ 27 (57)
T 1qyp_A 15 KITCPKCGNDTAY 27 (57)
T ss_dssp ECCCTTTCCSEEE
T ss_pred EeECCCCCCCEEE
Confidence 5678888876543
No 34
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=79.91 E-value=0.68 Score=21.79 Aligned_cols=10 Identities=30% Similarity=0.873 Sum_probs=7.7
Q ss_pred cccCCCCCCc
Q psy836 41 KYTCSFCGKD 50 (122)
Q Consensus 41 ky~Cp~Cgk~ 50 (122)
+|.|+.||+.
T Consensus 2 ~~~C~~C~~~ 11 (29)
T 2m0e_A 2 EHKCPHCDKK 11 (29)
T ss_dssp CCCCSSCCCC
T ss_pred CCcCCCCCcc
Confidence 5788888875
No 35
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=78.73 E-value=0.33 Score=38.35 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=27.6
Q ss_pred hccccCCCCCCc---eeEeEEeeeeeecCcceeeecce
Q psy836 39 HAKYTCSFCGKD---SMKRSCVGIWSCKRCKRIVAGGA 73 (122)
Q Consensus 39 ~aky~Cp~Cgk~---~mkR~avGIW~C~~C~~~vAggA 73 (122)
..+..||.||.. .+.-...|..-|..||.+|...-
T Consensus 19 n~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLEEri 56 (197)
T 3k1f_M 19 NIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKL 56 (197)
T ss_dssp CCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCCC
T ss_pred ccCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCCce
Confidence 445689999982 45667899999999999987653
No 36
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=78.31 E-value=1.5 Score=29.99 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=19.8
Q ss_pred ccCCCCCCceeEeEEeeeeeecCcceeeeccee
Q psy836 42 YTCSFCGKDSMKRSCVGIWSCKRCKRIVAGGAW 74 (122)
Q Consensus 42 y~Cp~Cgk~~mkR~avGIW~C~~C~~~vAggAy 74 (122)
..||.|+..... ..+..+|..|++-+.-.|+
T Consensus 3 ~~CP~C~~~l~~--~~~~~~C~~C~~~~~~~af 33 (81)
T 2jrp_A 3 ITCPVCHHALER--NGDTAHCETCAKDFSLQAL 33 (81)
T ss_dssp CCCSSSCSCCEE--CSSEEECTTTCCEEEEEEE
T ss_pred CCCCCCCCcccc--CCCceECccccccCCCccc
Confidence 468888776433 2346678888877666664
No 37
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=77.82 E-value=0.9 Score=21.52 Aligned_cols=10 Identities=20% Similarity=0.992 Sum_probs=7.9
Q ss_pred cccCCCCCCc
Q psy836 41 KYTCSFCGKD 50 (122)
Q Consensus 41 ky~Cp~Cgk~ 50 (122)
+|.|+.||+.
T Consensus 2 ~~~C~~C~~~ 11 (29)
T 1ard_A 2 SFVCEVCTRA 11 (29)
T ss_dssp CCBCTTTCCB
T ss_pred CeECCCCCcc
Confidence 5788888875
No 38
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=77.63 E-value=0.75 Score=21.92 Aligned_cols=11 Identities=27% Similarity=0.981 Sum_probs=8.0
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 2 k~~~C~~C~k~ 12 (27)
T 2kvh_A 2 KPFSCSLCPQR 12 (27)
T ss_dssp CCEECSSSSCE
T ss_pred cCccCCCcChh
Confidence 36788888875
No 39
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=77.41 E-value=0.77 Score=21.89 Aligned_cols=10 Identities=40% Similarity=0.989 Sum_probs=7.6
Q ss_pred cccCCCCCCc
Q psy836 41 KYTCSFCGKD 50 (122)
Q Consensus 41 ky~Cp~Cgk~ 50 (122)
+|.|+.||+.
T Consensus 2 ~~~C~~C~k~ 11 (29)
T 1rik_A 2 KFACPECPKR 11 (29)
T ss_dssp CEECSSSSCE
T ss_pred CccCCCCCch
Confidence 5788888875
No 40
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=77.17 E-value=1.5 Score=36.06 Aligned_cols=11 Identities=9% Similarity=0.178 Sum_probs=8.1
Q ss_pred hhHhHHHHHHH
Q psy836 27 LRKMVKKMEIT 37 (122)
Q Consensus 27 lRK~v~kie~~ 37 (122)
-||-+.+|...
T Consensus 271 ~~kti~~i~~~ 281 (444)
T 4gop_C 271 ERRTIVQVKDE 281 (444)
T ss_dssp EECCHHHHHHT
T ss_pred cceeHHHHhhh
Confidence 46788888765
No 41
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=76.91 E-value=0.95 Score=21.41 Aligned_cols=11 Identities=36% Similarity=1.029 Sum_probs=8.3
Q ss_pred cccCCCCCCce
Q psy836 41 KYTCSFCGKDS 51 (122)
Q Consensus 41 ky~Cp~Cgk~~ 51 (122)
+|.|+.||+.-
T Consensus 2 ~~~C~~C~k~f 12 (30)
T 1klr_A 2 TYQCQYCEFRS 12 (30)
T ss_dssp CCCCSSSSCCC
T ss_pred CccCCCCCCcc
Confidence 57888888753
No 42
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=78.37 E-value=0.51 Score=22.36 Aligned_cols=11 Identities=45% Similarity=1.026 Sum_probs=8.4
Q ss_pred cccCCCCCCce
Q psy836 41 KYTCSFCGKDS 51 (122)
Q Consensus 41 ky~Cp~Cgk~~ 51 (122)
+|.|+.||+.-
T Consensus 2 p~~C~~C~k~f 12 (26)
T 2lvu_A 2 PYVCERCGKRF 12 (26)
Confidence 58888888754
No 43
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=76.55 E-value=8.2 Score=27.26 Aligned_cols=26 Identities=31% Similarity=0.689 Sum_probs=19.7
Q ss_pred cCCCCCCceeEeEEe----eeeeecCccee
Q psy836 43 TCSFCGKDSMKRSCV----GIWSCKRCKRI 68 (122)
Q Consensus 43 ~Cp~Cgk~~mkR~av----GIW~C~~C~~~ 68 (122)
.||.||....-+..- -.+.|..|+..
T Consensus 5 ~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~ 34 (189)
T 3cng_A 5 FCSQCGGEVILRIPEGDTLPRYICPKCHTI 34 (189)
T ss_dssp BCTTTCCBCEEECCTTCSSCEEEETTTTEE
T ss_pred cCchhCCccccccccCCCCcceECCCCCCc
Confidence 699999998666533 36789999953
No 44
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=76.49 E-value=0.99 Score=23.00 Aligned_cols=12 Identities=17% Similarity=0.653 Sum_probs=9.7
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 10 k~~~C~~C~k~f 21 (37)
T 1p7a_A 10 KPFQCPDCDRSF 21 (37)
T ss_dssp SSBCCTTTCCCB
T ss_pred CCccCCCCCccc
Confidence 579999999863
No 45
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=76.45 E-value=1 Score=21.57 Aligned_cols=10 Identities=30% Similarity=1.205 Sum_probs=7.9
Q ss_pred cccCCCCCCc
Q psy836 41 KYTCSFCGKD 50 (122)
Q Consensus 41 ky~Cp~Cgk~ 50 (122)
+|.|+.||+.
T Consensus 2 ~~~C~~C~k~ 11 (30)
T 1paa_A 2 AYACGLCNRA 11 (30)
T ss_dssp CSBCTTTCCB
T ss_pred CcCCcccCcc
Confidence 5888888875
No 46
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=76.17 E-value=0.9 Score=21.62 Aligned_cols=11 Identities=55% Similarity=1.298 Sum_probs=8.2
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 2 k~~~C~~C~k~ 12 (28)
T 2kvf_A 2 RPYSCSVCGKR 12 (28)
T ss_dssp CSEECSSSCCE
T ss_pred cCccCCCCCcc
Confidence 36888888875
No 47
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=76.06 E-value=1 Score=21.12 Aligned_cols=10 Identities=30% Similarity=1.165 Sum_probs=6.9
Q ss_pred cccCCCCCCc
Q psy836 41 KYTCSFCGKD 50 (122)
Q Consensus 41 ky~Cp~Cgk~ 50 (122)
+|.|+.||+.
T Consensus 1 ~~~C~~C~k~ 10 (27)
T 1znf_A 1 XYKCGLCERS 10 (27)
T ss_dssp -CBCSSSCCB
T ss_pred CccCCCCCCc
Confidence 3778888875
No 48
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=75.81 E-value=1 Score=22.69 Aligned_cols=10 Identities=30% Similarity=0.923 Sum_probs=8.4
Q ss_pred cccCCCCCCc
Q psy836 41 KYTCSFCGKD 50 (122)
Q Consensus 41 ky~Cp~Cgk~ 50 (122)
+|.|+.||+.
T Consensus 2 p~~C~~C~k~ 11 (32)
T 2kfq_A 2 AFACPACPKR 11 (32)
T ss_dssp CSSSSSSCTT
T ss_pred CCCCCCCCcc
Confidence 6889999885
No 49
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=75.56 E-value=0.89 Score=21.45 Aligned_cols=10 Identities=40% Similarity=0.969 Sum_probs=7.0
Q ss_pred cccCCCCCCc
Q psy836 41 KYTCSFCGKD 50 (122)
Q Consensus 41 ky~Cp~Cgk~ 50 (122)
+|.|+.||+.
T Consensus 2 ~~~C~~C~k~ 11 (29)
T 2m0f_A 2 PLKCRECGKQ 11 (29)
T ss_dssp CEECTTTSCE
T ss_pred CccCCCCCCc
Confidence 5677777764
No 50
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=75.18 E-value=0.66 Score=22.41 Aligned_cols=11 Identities=36% Similarity=1.014 Sum_probs=7.9
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 2 k~~~C~~C~k~ 12 (27)
T 2kvg_A 2 APYRCPLCRAG 12 (27)
T ss_dssp CTEEETTTTEE
T ss_pred cCcCCCCCCcc
Confidence 36788888765
No 51
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=74.58 E-value=3.2 Score=29.23 Aligned_cols=30 Identities=17% Similarity=0.386 Sum_probs=23.2
Q ss_pred cccCCCCCCceeEeE----EeeeeeecCcceeee
Q psy836 41 KYTCSFCGKDSMKRS----CVGIWSCKRCKRIVA 70 (122)
Q Consensus 41 ky~Cp~Cgk~~mkR~----avGIW~C~~C~~~vA 70 (122)
-..||.||....-.. ....|.|+.|+....
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 357999999875443 378999999998654
No 52
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=74.56 E-value=1 Score=29.96 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=11.0
Q ss_pred CchHHHHHHHHHHHHHH
Q psy836 102 NTTAATSVRSAIRRLRE 118 (122)
Q Consensus 102 ~T~~~~~~~~~i~rl~e 118 (122)
.+..+..++.++++|.+
T Consensus 40 ~~~d~~eA~e~~~~lqa 56 (71)
T 1gh9_A 40 RADDFEEASELVRKLQE 56 (71)
T ss_dssp CCSSHHHHHHHHHHHSS
T ss_pred ecCCHHHHHHHHHHHHh
Confidence 36666677777776654
No 53
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=74.43 E-value=1 Score=21.30 Aligned_cols=11 Identities=36% Similarity=1.367 Sum_probs=8.1
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 2 k~~~C~~C~~~ 12 (30)
T 2m0d_A 2 KPYQCDYCGRS 12 (30)
T ss_dssp CCEECTTTCCE
T ss_pred cCccCCCCCcc
Confidence 46788888875
No 54
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=73.37 E-value=0.75 Score=37.03 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=27.9
Q ss_pred hccccCCCCCCc---eeEeEEeeeeeecCcceeeecc
Q psy836 39 HAKYTCSFCGKD---SMKRSCVGIWSCKRCKRIVAGG 72 (122)
Q Consensus 39 ~aky~Cp~Cgk~---~mkR~avGIW~C~~C~~~vAgg 72 (122)
.....||.||.. .+...+.|..-|..||.++...
T Consensus 19 ~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~e~ 55 (345)
T 3k7a_M 19 NIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDK 55 (345)
T ss_dssp CCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCC
T ss_pred cCCCcCcCCCCCCCceEEECCCCCEecCCCCeEcccc
Confidence 346679999995 4667789999999999998754
No 55
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=75.54 E-value=0.7 Score=22.22 Aligned_cols=11 Identities=36% Similarity=0.884 Sum_probs=8.5
Q ss_pred cccCCCCCCce
Q psy836 41 KYTCSFCGKDS 51 (122)
Q Consensus 41 ky~Cp~Cgk~~ 51 (122)
+|.|+.||+.-
T Consensus 2 ~~~C~~C~k~f 12 (29)
T 2lvt_A 2 PCQCVMCGKAF 12 (29)
Confidence 58899998764
No 56
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=72.63 E-value=1.2 Score=30.22 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=14.4
Q ss_pred cccCCCCCCc--eeEeE-EeeeeeecCcc
Q psy836 41 KYTCSFCGKD--SMKRS-CVGIWSCKRCK 66 (122)
Q Consensus 41 ky~Cp~Cgk~--~mkR~-avGIW~C~~C~ 66 (122)
.+.||||+-. ++.-. .-++|+|-.|+
T Consensus 37 ~~~CPfh~e~~pSf~V~~~k~~~~Cf~cg 65 (103)
T 1d0q_A 37 FGLCPFHGEKTPSFSVSPEKQIFHCFGCG 65 (103)
T ss_dssp EECCSSSCCSSCCEEEETTTTEEEETTTC
T ss_pred EEECCCCCCCCCcEEEEcCCCEEEECCCC
Confidence 4568888642 44432 24677755444
No 57
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=72.27 E-value=1.4 Score=22.40 Aligned_cols=10 Identities=40% Similarity=0.989 Sum_probs=8.0
Q ss_pred cccCCCCCCc
Q psy836 41 KYTCSFCGKD 50 (122)
Q Consensus 41 ky~Cp~Cgk~ 50 (122)
+|.|+.||+.
T Consensus 2 p~~C~~C~k~ 11 (33)
T 1rim_A 2 KFACPECPKR 11 (33)
T ss_dssp CCCCSSSCCC
T ss_pred cccCCCCCch
Confidence 5888888875
No 58
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.14 E-value=1.2 Score=22.59 Aligned_cols=11 Identities=36% Similarity=1.032 Sum_probs=9.0
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 8 k~~~C~~C~k~ 18 (36)
T 2els_A 8 KIFTCEYCNKV 18 (36)
T ss_dssp CCEECTTTCCE
T ss_pred CCEECCCCCce
Confidence 57889999875
No 59
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.84 E-value=1.5 Score=22.00 Aligned_cols=12 Identities=33% Similarity=0.800 Sum_probs=9.5
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 8 ~~~~C~~C~k~f 19 (36)
T 2elr_A 8 KTHLCDMCGKKF 19 (36)
T ss_dssp SSCBCTTTCCBC
T ss_pred CCeecCcCCCCc
Confidence 578999998753
No 60
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=71.65 E-value=1.3 Score=22.02 Aligned_cols=12 Identities=33% Similarity=0.844 Sum_probs=9.2
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 6 k~~~C~~C~k~f 17 (35)
T 2elx_A 6 SGYVCALCLKKF 17 (35)
T ss_dssp CSEECSSSCCEE
T ss_pred CCeECCCCcchh
Confidence 468899998753
No 61
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.95 E-value=1.4 Score=22.21 Aligned_cols=11 Identities=27% Similarity=0.779 Sum_probs=8.9
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 8 k~~~C~~C~k~ 18 (36)
T 2elt_A 8 KPYKCPQCSYA 18 (36)
T ss_dssp CSEECSSSSCE
T ss_pred CCCCCCCCCcc
Confidence 57899999875
No 62
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=73.39 E-value=0.87 Score=21.75 Aligned_cols=13 Identities=23% Similarity=0.692 Sum_probs=9.4
Q ss_pred ccccCCCCCCcee
Q psy836 40 AKYTCSFCGKDSM 52 (122)
Q Consensus 40 aky~Cp~Cgk~~m 52 (122)
.+|.|+.||+.-.
T Consensus 2 k~~~C~~C~k~f~ 14 (30)
T 2lvr_A 2 KPYVCIHCQRQFA 14 (30)
Confidence 3688999987643
No 63
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.01 E-value=1.5 Score=22.41 Aligned_cols=12 Identities=17% Similarity=0.517 Sum_probs=9.2
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 8 k~~~C~~C~k~f 19 (37)
T 2elp_A 8 RAMKCPYCDFYF 19 (37)
T ss_dssp CCEECSSSSCEE
T ss_pred CCeECCCCChhh
Confidence 468899998753
No 64
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=69.68 E-value=1.6 Score=21.93 Aligned_cols=12 Identities=17% Similarity=0.564 Sum_probs=9.2
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 6 k~~~C~~C~k~f 17 (35)
T 1srk_A 6 RPFVCRICLSAF 17 (35)
T ss_dssp SCEECSSSCCEE
T ss_pred cCeeCCCCCccc
Confidence 578899998753
No 65
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.43 E-value=1.6 Score=22.14 Aligned_cols=11 Identities=27% Similarity=0.930 Sum_probs=9.0
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 8 k~~~C~~C~k~ 18 (36)
T 2elv_A 8 LLYDCHICERK 18 (36)
T ss_dssp CCEECSSSCCE
T ss_pred CCeECCCCCCc
Confidence 57899999875
No 66
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.82 E-value=1.5 Score=22.71 Aligned_cols=12 Identities=42% Similarity=0.689 Sum_probs=9.3
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 8 k~~~C~~C~k~f 19 (37)
T 2elm_A 8 HLYYCSQCHYSS 19 (37)
T ss_dssp CEEECSSSSCEE
T ss_pred cCeECCCCCccc
Confidence 568999998753
No 67
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.63 E-value=1.6 Score=22.08 Aligned_cols=12 Identities=25% Similarity=0.825 Sum_probs=9.3
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.|++.-
T Consensus 8 k~~~C~~C~k~f 19 (36)
T 2elq_A 8 KPFKCSLCEYAT 19 (36)
T ss_dssp CSEECSSSSCEE
T ss_pred CCccCCCCCchh
Confidence 578899998763
No 68
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=67.60 E-value=1.5 Score=27.49 Aligned_cols=26 Identities=35% Similarity=1.000 Sum_probs=16.5
Q ss_pred ccccCCCCCCce--eEeEEee--eeeecCc
Q psy836 40 AKYTCSFCGKDS--MKRSCVG--IWSCKRC 65 (122)
Q Consensus 40 aky~Cp~Cgk~~--mkR~avG--IW~C~~C 65 (122)
....|+||||.. +++.-.| ++-|..|
T Consensus 10 ~~~~CSFCGk~~~ev~~LIaGpgv~IC~eC 39 (51)
T 2ds5_A 10 KLLYCSFCGKSQHEVRKLIAGPSVYICDEC 39 (51)
T ss_dssp CCCBCTTTCCBTTTSSCEEECSSCEEEHHH
T ss_pred CCcEecCCCCCHHHhcccCCCCCCEehHHH
Confidence 346799999985 5665544 4555444
No 69
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=67.29 E-value=2.6 Score=32.33 Aligned_cols=27 Identities=19% Similarity=0.444 Sum_probs=16.5
Q ss_pred ccCCCCCCceeEeEEeeeeeecCccee
Q psy836 42 YTCSFCGKDSMKRSCVGIWSCKRCKRI 68 (122)
Q Consensus 42 y~Cp~Cgk~~mkR~avGIW~C~~C~~~ 68 (122)
-.||.||.-.+=..--.-|+|.+|+.+
T Consensus 114 ~~Cp~Cg~g~fma~h~dR~~CGkC~~t 140 (189)
T 2xzm_9 114 KGCPKCGPGIFMAKHYDRHYCGKCHLT 140 (189)
T ss_dssp EECSTTCSSCEEEECSSCEEETTTCCC
T ss_pred ccCCccCCCccccCccCCCccCCceeE
Confidence 568888866433344456776666554
No 70
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=67.28 E-value=2.4 Score=34.66 Aligned_cols=51 Identities=16% Similarity=0.446 Sum_probs=32.3
Q ss_pred hhccccCCCCCCceeEe----EEeeeeeecCcceeeecceeeeeccceeeeeeecCcCeEEeccccc
Q psy836 38 QHAKYTCSFCGKDSMKR----SCVGIWSCKRCKRIVAGGAWDSMKRSCVGIWSCKRCKRIVAGGAWV 100 (122)
Q Consensus 38 ~~aky~Cp~Cgk~~mkR----~avGIW~C~~C~~~vAggAy~~~t~~AvtV~s~~rC~~~~AGGAy~ 100 (122)
-.+.-.||-||...+.. ..|....|+.|+-- |++--.. ..=+.++++|||.
T Consensus 31 v~~n~yCPnCG~~~l~~f~nN~PVaDF~C~~C~Ee-----yELKSk~-------~~~~~~I~dGAY~ 85 (257)
T 4esj_A 31 VYRQSYCPNCGNNPLNHFENNRPVADFYCNHCSEE-----FELKSKK-------GNFSSTINDGAYA 85 (257)
T ss_dssp HHHHCCCTTTCCSSCEEC----CCCEEECTTTCCE-----EEEEEEE-------SSCCSEEEEEEHH
T ss_pred HHHCCcCCCCCChhhhhccCCCcccccccCCcchh-----heecccc-------CccCccccCchHH
Confidence 34566799999976643 36888999999863 3332111 2245577777773
No 71
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=67.28 E-value=2.3 Score=30.61 Aligned_cols=44 Identities=7% Similarity=0.117 Sum_probs=25.7
Q ss_pred ChhhhHhHHHHHHHhhccccCCCCCCceeEeEEeeeeeecCcceeeecce
Q psy836 24 GASLRKMVKKMEITQHAKYTCSFCGKDSMKRSCVGIWSCKRCKRIVAGGA 73 (122)
Q Consensus 24 G~slRK~v~kie~~~~aky~Cp~Cgk~~mkR~avGIW~C~~C~~~vAggA 73 (122)
-..|+.-++.+.... .+. |....--..-+.|.|..||..+....
T Consensus 41 ~e~l~faf~~~~~gt----~~e--~A~L~i~~~p~~~~C~~CG~~~~~~~ 84 (139)
T 3a43_A 41 EDIVKFAMEQLFAGT----IAE--GAEIEFVEEEAVFKCRNCNYEWKLKE 84 (139)
T ss_dssp HHHHHHHHHHHHTTS----TTT--TCEEEEEEECCEEEETTTCCEEEGGG
T ss_pred HHHHHHHHHHHHcCC----ccc--CCEEEEEecCCcEECCCCCCEEeccc
Confidence 355666665553321 111 33333335567899999999977655
No 72
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.48 E-value=1.4 Score=22.41 Aligned_cols=11 Identities=36% Similarity=1.065 Sum_probs=8.6
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 8 k~~~C~~C~k~ 18 (37)
T 2elo_A 8 RSYSCPVCEKS 18 (37)
T ss_dssp CCCEETTTTEE
T ss_pred CCcCCCCCCCc
Confidence 46888888875
No 73
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=65.64 E-value=1.5 Score=28.75 Aligned_cols=30 Identities=23% Similarity=0.635 Sum_probs=20.2
Q ss_pred hhccccCCCCCCce-eEeEEeeeeeecCcceee
Q psy836 38 QHAKYTCSFCGKDS-MKRSCVGIWSCKRCKRIV 69 (122)
Q Consensus 38 ~~aky~Cp~Cgk~~-mkR~avGIW~C~~C~~~v 69 (122)
+-..|.|..||..- ++. . ..=.|+.||..|
T Consensus 18 ~~v~Y~C~~Cg~~~~l~~-~-~~iRC~~CG~RI 48 (63)
T 3h0g_L 18 ATMIYLCADCGARNTIQA-K-EVIRCRECGHRV 48 (63)
T ss_dssp -CCCCBCSSSCCBCCCCS-S-SCCCCSSSCCCC
T ss_pred CCeEEECCCCCCeeecCC-C-CceECCCCCcEE
Confidence 35679999999884 442 2 334888888653
No 74
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=65.29 E-value=2.4 Score=22.09 Aligned_cols=12 Identities=42% Similarity=0.949 Sum_probs=9.6
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 10 k~~~C~~C~k~f 21 (42)
T 2ytb_A 10 KPYRCDQCGKAF 21 (42)
T ss_dssp CSBCCTTTTCCB
T ss_pred CCeeCCCccchh
Confidence 579999999853
No 75
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=65.12 E-value=3.3 Score=31.26 Aligned_cols=60 Identities=12% Similarity=0.254 Sum_probs=36.2
Q ss_pred ChhhhHhHHHHHHH---hhccccCCCCCCceeEeEEee--eeeecCcceeeecceeeeeccceeeeeeecCcCeE
Q psy836 24 GASLRKMVKKMEIT---QHAKYTCSFCGKDSMKRSCVG--IWSCKRCKRIVAGGAWDSMKRSCVGIWSCKRCKRI 93 (122)
Q Consensus 24 G~slRK~v~kie~~---~~aky~Cp~Cgk~~mkR~avG--IW~C~~C~~~vAggAy~~~t~~AvtV~s~~rC~~~ 93 (122)
=+|+||-+..+... +..+|. ..+....-+..-. -=.|+.|+|+|.. ..-+.|.|.+|+..
T Consensus 4 ~~~i~~~i~~~~~e~lG~~~~~f--v~atI~~Ik~d~~~~Y~ACp~CnKKV~~--------~~~g~~~CekC~~~ 68 (172)
T 3u50_C 4 YSSIEEIIQQAQASEIGQKKEFY--VYGNLVSIQMKNKLYYYRCTCQGKSVLK--------YHGDSFFCESCQQF 68 (172)
T ss_dssp BCCHHHHHHHHHTCCTTCEEEEE--EEEEEECCCCSSCCEEEECTTSCCCEEE--------ETTTEEEETTTTEE
T ss_pred HHHHHHHHHHHHHhhCCCCCCEE--EEEEEEEEcCCCcEEehhchhhCCEeee--------CCCCeEECCCCCCC
Confidence 36889998888765 333344 2233222111112 2269999999862 11257789999997
No 76
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=64.91 E-value=0.88 Score=31.22 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=13.8
Q ss_pred eecCcCeEEeccccccCc
Q psy836 86 SCKRCKRIVAGGAWVYNT 103 (122)
Q Consensus 86 s~~rC~~~~AGGAy~~~T 103 (122)
+||.|++.|-|..|.-.|
T Consensus 39 SCIDC~~~F~~~~y~~Ht 56 (79)
T 1wjv_A 39 SCIDCGKDFWGDDYKSHV 56 (79)
T ss_dssp EETTTTEEEEGGGTTTCC
T ss_pred EecccCCeeCCCCEeCEe
Confidence 388999988888776544
No 77
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.39 E-value=2.6 Score=22.07 Aligned_cols=11 Identities=36% Similarity=1.135 Sum_probs=9.2
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 10 k~~~C~~C~k~ 20 (42)
T 2eos_A 10 KPYPCEICGTR 20 (42)
T ss_dssp CCBCCSSSCCC
T ss_pred CCEECCCCCCc
Confidence 57999999985
No 78
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=64.19 E-value=2.3 Score=23.86 Aligned_cols=12 Identities=25% Similarity=0.731 Sum_probs=9.0
Q ss_pred eeeeeecCccee
Q psy836 57 VGIWSCKRCKRI 68 (122)
Q Consensus 57 vGIW~C~~C~~~ 68 (122)
.|.|.|+.|+..
T Consensus 3 ~gDW~C~~C~~~ 14 (32)
T 2lk0_A 3 FEDWLCNKCCLN 14 (32)
T ss_dssp CSEEECTTTCCE
T ss_pred CCCCCcCcCcCC
Confidence 378998888664
No 79
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=63.94 E-value=1.2 Score=33.76 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=8.6
Q ss_pred eeeeecCcceeeec
Q psy836 58 GIWSCKRCKRIVAG 71 (122)
Q Consensus 58 GIW~C~~C~~~vAg 71 (122)
.+|.|+-||.+.-|
T Consensus 170 ~~~~C~~CG~i~~g 183 (202)
T 1yuz_A 170 KFHLCPICGYIHKG 183 (202)
T ss_dssp CEEECSSSCCEEES
T ss_pred cEEEECCCCCEEcC
Confidence 45667667666543
No 80
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=63.70 E-value=2.3 Score=25.28 Aligned_cols=11 Identities=36% Similarity=0.939 Sum_probs=6.2
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.|++.
T Consensus 44 ~~~~C~~C~~~ 54 (77)
T 2ct1_A 44 AKFHCPHCDTV 54 (77)
T ss_dssp SSEECSSSSCE
T ss_pred CccCCCCCCCc
Confidence 35666666553
No 81
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=63.49 E-value=2.4 Score=24.31 Aligned_cols=11 Identities=45% Similarity=1.117 Sum_probs=6.9
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 39 ~~~~C~~C~k~ 49 (66)
T 2drp_A 39 KVYPCPFCFKE 49 (66)
T ss_dssp CCEECTTTCCE
T ss_pred cCeECCCCCCc
Confidence 45667777654
No 82
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=63.45 E-value=2.3 Score=22.02 Aligned_cols=12 Identities=50% Similarity=1.207 Sum_probs=9.3
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 5 k~~~C~~C~k~f 16 (39)
T 1njq_A 5 RSYTCSFCKREF 16 (39)
T ss_dssp SSEECTTTCCEE
T ss_pred CceECCCCCccc
Confidence 568899998763
No 83
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=63.30 E-value=2.6 Score=22.99 Aligned_cols=10 Identities=10% Similarity=0.149 Sum_probs=8.5
Q ss_pred ccccCCCCCC
Q psy836 40 AKYTCSFCGK 49 (122)
Q Consensus 40 aky~Cp~Cgk 49 (122)
.+|.|+.|||
T Consensus 39 k~~~C~~C~k 48 (48)
T 2epr_A 39 KPYSSGPSSG 48 (48)
T ss_dssp CCCCSCCCCC
T ss_pred CCccCCCCCC
Confidence 5799999986
No 84
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=62.62 E-value=1.8 Score=28.72 Aligned_cols=25 Identities=36% Similarity=1.046 Sum_probs=16.3
Q ss_pred cccCCCCCCce--eEeEEee--eeeecCc
Q psy836 41 KYTCSFCGKDS--MKRSCVG--IWSCKRC 65 (122)
Q Consensus 41 ky~Cp~Cgk~~--mkR~avG--IW~C~~C 65 (122)
...|+||||.. +++.-.| ++-|..|
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGpgvyICdeC 46 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGPSVYICDEC 46 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECSSCEEEHHH
T ss_pred CcEecCCCCCHHHHcccCCCCCCChhHHH
Confidence 46799999985 5555443 4555554
No 85
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=62.37 E-value=1.3 Score=27.25 Aligned_cols=10 Identities=50% Similarity=1.308 Sum_probs=5.3
Q ss_pred ccccCCCCCC
Q psy836 40 AKYTCSFCGK 49 (122)
Q Consensus 40 aky~Cp~Cgk 49 (122)
++|.|+.||-
T Consensus 3 ~~y~C~vCGy 12 (46)
T 6rxn_A 3 QKYVCNVCGY 12 (46)
T ss_dssp CCEEETTTCC
T ss_pred CEEECCCCCe
Confidence 3455555554
No 86
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.30 E-value=3.1 Score=22.21 Aligned_cols=12 Identities=42% Similarity=0.861 Sum_probs=9.6
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~F 22 (46)
T 2enf_A 11 KPYKCNECGKVF 22 (46)
T ss_dssp CSCBCSSSCCBC
T ss_pred cCeECCCCCccc
Confidence 579999999863
No 87
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=62.23 E-value=2.6 Score=21.92 Aligned_cols=11 Identities=45% Similarity=1.138 Sum_probs=8.9
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 10 ~~~~C~~C~k~ 20 (42)
T 2epc_A 10 TPYLCGQCGKS 20 (42)
T ss_dssp CCEECSSSCCE
T ss_pred CCeECCCCCcc
Confidence 56889999875
No 88
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.22 E-value=3.1 Score=21.63 Aligned_cols=11 Identities=27% Similarity=0.866 Sum_probs=9.2
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 9 k~~~C~~C~k~ 19 (42)
T 2yte_A 9 KPYSCAECKET 19 (42)
T ss_dssp CSCBCTTTCCB
T ss_pred CCeECCCCCCc
Confidence 57999999985
No 89
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.13 E-value=2.6 Score=22.50 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=9.5
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~F 22 (44)
T 2epv_A 11 KPYECNECGKAF 22 (44)
T ss_dssp CSEECSSSCCEE
T ss_pred cCeECCCCCccc
Confidence 578999998863
No 90
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.54 E-value=2.9 Score=22.33 Aligned_cols=11 Identities=45% Similarity=1.102 Sum_probs=9.3
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2eq1_A 11 KPYKCNECGKA 21 (46)
T ss_dssp CCCCCTTTTCC
T ss_pred CCeECCcCChh
Confidence 57999999986
No 91
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=61.48 E-value=5.4 Score=29.71 Aligned_cols=32 Identities=22% Similarity=0.623 Sum_probs=20.0
Q ss_pred eEeEEeeeeeecCcceeeecceeeeeccceeeeeeecCcCe
Q psy836 52 MKRSCVGIWSCKRCKRIVAGGAWDSMKRSCVGIWSCKRCKR 92 (122)
Q Consensus 52 mkR~avGIW~C~~C~~~vAggAy~~~t~~AvtV~s~~rC~~ 92 (122)
+++.....|.|+-||.+.-|.. .+- .|+.|+.
T Consensus 148 ~~~~~~~~~~C~~CG~~~~g~~-----~p~----~CP~C~~ 179 (191)
T 1lko_A 148 FLREQATKWRCRNCGYVHEGTG-----APE----LCPACAH 179 (191)
T ss_dssp SEEEEEEEEEETTTCCEEEEEE-----CCS----BCTTTCC
T ss_pred cccCCCceEEECCCCCEeeCCC-----CCC----CCCCCcC
Confidence 3455566888888888765431 111 5888874
No 92
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.15 E-value=3.1 Score=21.81 Aligned_cols=11 Identities=45% Similarity=1.099 Sum_probs=9.3
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (44)
T 2en7_A 11 KPYVCNECGKA 21 (44)
T ss_dssp SSSCCTTTCCC
T ss_pred cCeECCCCCCc
Confidence 57999999986
No 93
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.01 E-value=3.2 Score=22.19 Aligned_cols=13 Identities=38% Similarity=0.805 Sum_probs=10.0
Q ss_pred hccccCCCCCCce
Q psy836 39 HAKYTCSFCGKDS 51 (122)
Q Consensus 39 ~aky~Cp~Cgk~~ 51 (122)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2yti_A 10 EKPYKCNECGKVF 22 (46)
T ss_dssp CCTTCCSSSCCCC
T ss_pred CcCeECCCCCccc
Confidence 3579999999863
No 94
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.00 E-value=2.8 Score=21.83 Aligned_cols=11 Identities=45% Similarity=1.059 Sum_probs=9.0
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 9 k~~~C~~C~k~ 19 (41)
T 2ept_A 9 RVYECQECGKS 19 (41)
T ss_dssp CCEECSSSCCE
T ss_pred CCeECCCCCCC
Confidence 57889999875
No 95
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.99 E-value=3.4 Score=22.24 Aligned_cols=12 Identities=42% Similarity=1.024 Sum_probs=9.8
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2eon_A 11 KPYKCQVCGKAF 22 (46)
T ss_dssp CSCBCSSSCCBC
T ss_pred cccCCCCCCccc
Confidence 579999999863
No 96
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.80 E-value=2.8 Score=22.21 Aligned_cols=11 Identities=27% Similarity=0.791 Sum_probs=9.0
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (44)
T 2yu5_A 11 NPFKCSKCDRV 21 (44)
T ss_dssp CSEECSSSSCE
T ss_pred CCeECCCCCch
Confidence 57899999875
No 97
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.54 E-value=2.8 Score=21.87 Aligned_cols=11 Identities=36% Similarity=1.023 Sum_probs=8.9
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 10 k~~~C~~C~k~ 20 (42)
T 2en2_A 10 KPYKCETCGAR 20 (42)
T ss_dssp CSEECTTTCCE
T ss_pred CCEeCCCcChh
Confidence 56889999875
No 98
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.53 E-value=2.9 Score=22.36 Aligned_cols=12 Identities=50% Similarity=0.991 Sum_probs=9.5
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 ~~~~C~~C~k~F 22 (46)
T 2emi_A 11 RHYECSECGKAF 22 (46)
T ss_dssp CCEECSSSCCEE
T ss_pred CCCCCCCCCccc
Confidence 568999998763
No 99
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=60.42 E-value=1.2 Score=28.93 Aligned_cols=14 Identities=14% Similarity=0.510 Sum_probs=10.9
Q ss_pred hhccccCCCCCCce
Q psy836 38 QHAKYTCSFCGKDS 51 (122)
Q Consensus 38 ~~aky~Cp~Cgk~~ 51 (122)
...+|.|+.||+.-
T Consensus 71 ~~~~~~C~~C~k~f 84 (129)
T 2wbt_A 71 AISQFVCPLCLMPF 84 (129)
T ss_dssp HHCSEECTTTCCEE
T ss_pred CCCCeECCCCCccc
Confidence 35789999999864
No 100
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.19 E-value=3.3 Score=22.17 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=9.8
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2eoh_A 11 KPYECKECRKTF 22 (46)
T ss_dssp CSCCCSSSCCCC
T ss_pred CCcCCCCcCchh
Confidence 579999999863
No 101
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=60.12 E-value=3 Score=21.76 Aligned_cols=11 Identities=55% Similarity=1.138 Sum_probs=9.0
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 9 k~~~C~~C~k~ 19 (42)
T 2el5_A 9 NPYECSECGKA 19 (42)
T ss_dssp CSEECSSSCCE
T ss_pred CCccCCCcChh
Confidence 56899999875
No 102
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.11 E-value=3.4 Score=22.16 Aligned_cols=12 Identities=33% Similarity=0.863 Sum_probs=9.7
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.|++.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2emz_A 11 RPFKCNECGKGF 22 (46)
T ss_dssp CSCCCSSSCCCC
T ss_pred CCeECCCCCccc
Confidence 579999999863
No 103
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=59.52 E-value=3.1 Score=22.33 Aligned_cols=12 Identities=50% Similarity=0.991 Sum_probs=9.5
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~F 22 (46)
T 2ytp_A 11 RHYECSECGKAF 22 (46)
T ss_dssp CCEECSSSCCEE
T ss_pred CCeECCcCCccc
Confidence 578999998763
No 104
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=59.29 E-value=3 Score=21.87 Aligned_cols=12 Identities=33% Similarity=0.717 Sum_probs=9.4
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (44)
T 2eof_A 11 KPYECNECQKAF 22 (44)
T ss_dssp CSEECTTTCCEE
T ss_pred CCeECCCCCccc
Confidence 568999998763
No 105
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=59.20 E-value=3.1 Score=22.34 Aligned_cols=11 Identities=36% Similarity=1.044 Sum_probs=9.0
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2emj_A 11 KPFECAECGKS 21 (46)
T ss_dssp CSEECSSSSCE
T ss_pred CCEECCCCCcc
Confidence 56899999876
No 106
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=59.11 E-value=3.8 Score=21.75 Aligned_cols=11 Identities=55% Similarity=1.147 Sum_probs=9.3
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 ~~~~C~~C~k~ 21 (46)
T 2eov_A 11 KPYKCSDCGKS 21 (46)
T ss_dssp CSCBCSSSCCB
T ss_pred CCccCCccChh
Confidence 57999999985
No 107
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=59.10 E-value=3.6 Score=21.93 Aligned_cols=12 Identities=42% Similarity=0.930 Sum_probs=9.7
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2eq2_A 11 KPYQCNECGKAF 22 (46)
T ss_dssp CSSSCCSSCCCC
T ss_pred CCeECCCCCccc
Confidence 579999999863
No 108
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=59.05 E-value=3.6 Score=21.86 Aligned_cols=12 Identities=50% Similarity=0.969 Sum_probs=9.6
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2ep1_A 11 KPYECSDCGKSF 22 (46)
T ss_dssp CSSCCSSSCCCC
T ss_pred CCcCCCCCCchh
Confidence 579999999863
No 109
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.89 E-value=3.1 Score=22.12 Aligned_cols=11 Identities=45% Similarity=1.102 Sum_probs=9.0
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2eow_A 11 KPYKCNECGKA 21 (46)
T ss_dssp CCEECTTSCCE
T ss_pred CCeeccccCCh
Confidence 56899999876
No 110
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.89 E-value=3.7 Score=21.87 Aligned_cols=12 Identities=42% Similarity=0.805 Sum_probs=9.6
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2emg_A 11 NPFICSECGKVF 22 (46)
T ss_dssp CSCBCTTTCCBC
T ss_pred CCEECCccCccc
Confidence 569999999863
No 111
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.70 E-value=3.3 Score=22.05 Aligned_cols=11 Identities=36% Similarity=0.824 Sum_probs=9.1
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2ytf_A 11 KPFECSECQKA 21 (46)
T ss_dssp CSEECSSSCCE
T ss_pred CCcCCCCCCcc
Confidence 57899999875
No 112
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=58.69 E-value=2.3 Score=23.83 Aligned_cols=12 Identities=33% Similarity=0.827 Sum_probs=9.5
Q ss_pred hccccCCCCCCc
Q psy836 39 HAKYTCSFCGKD 50 (122)
Q Consensus 39 ~aky~Cp~Cgk~ 50 (122)
..+|.|+.|||.
T Consensus 6 ekp~~C~~CgK~ 17 (36)
T 1fv5_A 6 PARFMCLPCGIA 17 (36)
T ss_dssp CCCCEETTTTEE
T ss_pred ccCeECCCCCCc
Confidence 367899999886
No 113
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.65 E-value=3.3 Score=22.04 Aligned_cols=11 Identities=45% Similarity=1.105 Sum_probs=9.0
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2yts_A 11 KPYICNECGKS 21 (46)
T ss_dssp CSEECSSSCCE
T ss_pred cCEECCCCChh
Confidence 56899999876
No 114
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.63 E-value=3.8 Score=21.93 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=9.7
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~F 22 (46)
T 2enh_A 11 KPYECDVCRKAF 22 (46)
T ss_dssp SSCBCTTTCCBC
T ss_pred CCcCCCCcCchh
Confidence 579999999863
No 115
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.61 E-value=0.8 Score=26.45 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=18.7
Q ss_pred ccccCCCCCCceeEeEE---eeeeeecCcceee
Q psy836 40 AKYTCSFCGKDSMKRSC---VGIWSCKRCKRIV 69 (122)
Q Consensus 40 aky~Cp~Cgk~~mkR~a---vGIW~C~~C~~~v 69 (122)
.+|.|+.||+.-..+.. ...+.|..|++.+
T Consensus 17 ~~~~C~~C~k~f~~~~~l~~~~~~~C~~C~~~f 49 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDS 49 (73)
T ss_dssp SEEECSSSCCEEECCCCCCCSSSCCCHHHHHTC
T ss_pred CCeeCCcccchhCCHHHhCcCCCCCCCCCChhh
Confidence 46899999876322211 3457777777654
No 116
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.53 E-value=3.3 Score=22.20 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=9.4
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2em4_A 11 RPYECIECGKAF 22 (46)
T ss_dssp SSEECSSSCCEE
T ss_pred cCcCCCCCCCcc
Confidence 578999998763
No 117
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.46 E-value=3.9 Score=21.90 Aligned_cols=12 Identities=33% Similarity=0.836 Sum_probs=9.6
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2yth_A 11 KPFQCEECGKRF 22 (46)
T ss_dssp SSBCCSSSCCCB
T ss_pred cCCCCCCCCccc
Confidence 579999999863
No 118
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.28 E-value=3.3 Score=22.09 Aligned_cols=12 Identities=25% Similarity=0.775 Sum_probs=9.4
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~F 22 (46)
T 2en3_A 11 KPFQCKECGMNF 22 (46)
T ss_dssp CSEECSSSCCEE
T ss_pred CCeeCcccChhh
Confidence 568999998763
No 119
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.12 E-value=3.9 Score=21.70 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=9.7
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 ~~~~C~~C~k~f 22 (46)
T 2eop_A 11 KPHECRECGKSF 22 (46)
T ss_dssp CSCBCTTTCCBC
T ss_pred CCeeCCCCCchh
Confidence 579999999863
No 120
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.01 E-value=3.4 Score=22.15 Aligned_cols=11 Identities=55% Similarity=1.123 Sum_probs=9.0
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2yto_A 11 KPYKCSDCGKA 21 (46)
T ss_dssp CCEECSSSCCE
T ss_pred CCEECcccCCc
Confidence 57899999875
No 121
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.98 E-value=3.4 Score=22.15 Aligned_cols=11 Identities=27% Similarity=0.757 Sum_probs=9.0
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2eoy_A 11 KCFKCNKCEKT 21 (46)
T ss_dssp CCEECSSSCCE
T ss_pred CCEECcCCCCc
Confidence 57899999875
No 122
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.86 E-value=3.3 Score=21.88 Aligned_cols=12 Identities=33% Similarity=0.769 Sum_probs=9.4
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (44)
T 2emb_A 11 KRYECSKCQATF 22 (44)
T ss_dssp SSEECTTTCCEE
T ss_pred CCeECCCCCCcc
Confidence 568999998763
No 123
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.67 E-value=4 Score=21.92 Aligned_cols=12 Identities=42% Similarity=0.531 Sum_probs=9.7
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.|++.-
T Consensus 11 k~~~C~~C~k~F 22 (46)
T 2eom_A 11 RGHRCSDCGKFF 22 (46)
T ss_dssp SSCCCSSSCCCC
T ss_pred CCcCCCCCCCee
Confidence 579999999863
No 124
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=57.56 E-value=2.4 Score=31.48 Aligned_cols=13 Identities=15% Similarity=0.539 Sum_probs=9.1
Q ss_pred eeeeecCcceeee
Q psy836 58 GIWSCKRCKRIVA 70 (122)
Q Consensus 58 GIW~C~~C~~~vA 70 (122)
-.|.|+-||.+.-
T Consensus 137 ~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 137 KVYICPICGYTAV 149 (170)
T ss_dssp CEEECTTTCCEEE
T ss_pred CeeEeCCCCCeeC
Confidence 4677888877654
No 125
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.46 E-value=3.5 Score=21.91 Aligned_cols=12 Identities=42% Similarity=0.910 Sum_probs=9.3
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 ~~~~C~~C~k~f 22 (46)
T 2yrj_A 11 KPYRCGECGKAF 22 (46)
T ss_dssp CCEECSSSCCEE
T ss_pred CCeECCCCCCcc
Confidence 568999998763
No 126
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.16 E-value=4.3 Score=21.70 Aligned_cols=12 Identities=42% Similarity=1.054 Sum_probs=9.5
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2em6_A 11 KCYKCDVCGKEF 22 (46)
T ss_dssp CCCBCSSSCCBC
T ss_pred CCeECCCCCccc
Confidence 569999998863
No 127
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.06 E-value=3.6 Score=21.95 Aligned_cols=12 Identities=33% Similarity=0.844 Sum_probs=9.4
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 ~~~~C~~C~k~F 22 (46)
T 2em3_A 11 KPYECKVCSKAF 22 (46)
T ss_dssp CSEECSSSCCEE
T ss_pred cCeECCCCCccc
Confidence 568999998763
No 128
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.97 E-value=3.6 Score=21.94 Aligned_cols=12 Identities=42% Similarity=0.930 Sum_probs=9.4
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2ep3_A 11 KPYRCAECGKAF 22 (46)
T ss_dssp CSEECSSSCCEE
T ss_pred CCeECCCCCchh
Confidence 568999998863
No 129
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=56.74 E-value=4.4 Score=21.65 Aligned_cols=12 Identities=42% Similarity=0.905 Sum_probs=9.7
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~F 22 (46)
T 2emk_A 11 KPYECKECGKAF 22 (46)
T ss_dssp CSCBCSSSCCBC
T ss_pred CceECCCCCchh
Confidence 579999999863
No 130
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=56.70 E-value=9.6 Score=27.22 Aligned_cols=32 Identities=19% Similarity=0.415 Sum_probs=22.4
Q ss_pred cccCCCCCCceeEeEEeeeeeecCcceeeeccee
Q psy836 41 KYTCSFCGKDSMKRSCVGIWSCKRCKRIVAGGAW 74 (122)
Q Consensus 41 ky~Cp~Cgk~~mkR~avGIW~C~~C~~~vAggAy 74 (122)
.-.||.|+.... +. -|.++|..|.+-+.=-|+
T Consensus 32 ~~~CP~Cq~eL~-~~-g~~~hC~~C~~~f~~~a~ 63 (101)
T 2jne_A 32 ELHCPQCQHVLD-QD-NGHARCRSCGEFIEMKAL 63 (101)
T ss_dssp CCBCSSSCSBEE-EE-TTEEEETTTCCEEEEEEE
T ss_pred cccCccCCCcce-ec-CCEEECccccchhhcccc
Confidence 368999998744 43 457889999986544443
No 131
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.56 E-value=4.1 Score=21.60 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=9.6
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 ~~~~C~~C~k~f 22 (44)
T 2eou_A 11 TTSECQECGKIF 22 (44)
T ss_dssp CCCCCTTTCCCC
T ss_pred cCeECCCCCccc
Confidence 578999998863
No 132
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.26 E-value=4.4 Score=21.67 Aligned_cols=12 Identities=25% Similarity=0.611 Sum_probs=9.6
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~F 22 (46)
T 2en9_A 11 KLFKCNECKKTF 22 (46)
T ss_dssp CCCBCTTTCCBC
T ss_pred CCEECCccCccc
Confidence 579999998863
No 133
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=56.15 E-value=4.5 Score=21.64 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=9.7
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2ely_A 11 KPFKCVECGKGF 22 (46)
T ss_dssp CSBCCSSSCCCB
T ss_pred CCcccCccCccc
Confidence 579999999863
No 134
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.11 E-value=4.5 Score=21.55 Aligned_cols=12 Identities=42% Similarity=0.955 Sum_probs=9.6
Q ss_pred hccccCCCCCCc
Q psy836 39 HAKYTCSFCGKD 50 (122)
Q Consensus 39 ~aky~Cp~Cgk~ 50 (122)
..+|.|+.||+.
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ytn_A 10 KKPYKCNECGKV 21 (46)
T ss_dssp CSSCBCTTTCCB
T ss_pred CcCeECCCCCCe
Confidence 357999999986
No 135
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.07 E-value=4.3 Score=21.61 Aligned_cols=12 Identities=33% Similarity=1.005 Sum_probs=9.7
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 ~~~~C~~C~k~f 22 (46)
T 2eoq_A 11 KPFKCDICGKSF 22 (46)
T ss_dssp CSCCCSSSCCCC
T ss_pred CCcCCCcCCchh
Confidence 579999999863
No 136
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.96 E-value=3.8 Score=21.83 Aligned_cols=12 Identities=42% Similarity=0.919 Sum_probs=9.5
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2ytj_A 11 KPYICAECGKAF 22 (46)
T ss_dssp CSEECSSSCCEE
T ss_pred cCeECCCCChhh
Confidence 578999998763
No 137
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.86 E-value=4.5 Score=21.46 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=9.6
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 9 k~~~C~~C~k~f 20 (43)
T 2yrm_A 9 GAFFCNECDCRF 20 (43)
T ss_dssp CCBCCSSSCCCB
T ss_pred CCEECCCCCCee
Confidence 579999998863
No 138
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=55.83 E-value=4.4 Score=21.58 Aligned_cols=12 Identities=17% Similarity=0.431 Sum_probs=9.7
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~F 22 (46)
T 2em0_A 11 KTWKCRECDMCF 22 (46)
T ss_dssp CCCCCSSSCCCC
T ss_pred cCeECCCCCccc
Confidence 579999999863
No 139
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=55.80 E-value=4.2 Score=28.24 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=23.0
Q ss_pred ccCCCCCCceeEeEEe----eeeeecCcceeeecc
Q psy836 42 YTCSFCGKDSMKRSCV----GIWSCKRCKRIVAGG 72 (122)
Q Consensus 42 y~Cp~Cgk~~mkR~av----GIW~C~~C~~~vAgg 72 (122)
..||.||....-+..- -.|.|+.|+....-.
T Consensus 5 ~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (113)
T 3h0g_I 5 QYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAA 39 (113)
T ss_dssp CCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCS
T ss_pred eeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcC
Confidence 5799999997555442 379999999876443
No 140
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.78 E-value=2.8 Score=22.11 Aligned_cols=11 Identities=45% Similarity=0.996 Sum_probs=8.8
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (44)
T 2eoj_A 11 NPYECCECGKV 21 (44)
T ss_dssp CSCEETTTTEE
T ss_pred cCeeCCCCCCc
Confidence 56889999875
No 141
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.76 E-value=3.9 Score=21.89 Aligned_cols=12 Identities=33% Similarity=0.836 Sum_probs=9.4
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2em2_A 11 KPFKCKECGKAF 22 (46)
T ss_dssp CSEECSSSCCEE
T ss_pred CCEECCcCCchh
Confidence 568999998763
No 142
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.75 E-value=4.4 Score=21.58 Aligned_cols=12 Identities=33% Similarity=0.764 Sum_probs=9.7
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2epz_A 11 KPFDCIDCGKAF 22 (46)
T ss_dssp CSBCCTTTCCCB
T ss_pred CCeECCCCCcee
Confidence 579999999863
No 143
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.51 E-value=4.7 Score=21.37 Aligned_cols=12 Identities=42% Similarity=0.852 Sum_probs=9.6
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~F 22 (47)
T 2epx_A 11 KPYECIECGKAF 22 (47)
T ss_dssp CSBCCSSSCCCB
T ss_pred CCEECCccCchh
Confidence 579999999863
No 144
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.49 E-value=3.8 Score=21.75 Aligned_cols=12 Identities=42% Similarity=0.924 Sum_probs=9.4
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 ~~~~C~~C~k~f 22 (46)
T 2eor_A 11 KPYNCEECGKAF 22 (46)
T ss_dssp CSEECTTTCCEE
T ss_pred cCccCCCCCCCc
Confidence 568999998763
No 145
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.39 E-value=4 Score=21.68 Aligned_cols=11 Identities=36% Similarity=0.869 Sum_probs=9.1
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2epw_A 11 KPCKCTECGKA 21 (46)
T ss_dssp CSEECSSSCCE
T ss_pred CCeeCCCCCCc
Confidence 56899999876
No 146
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.37 E-value=4 Score=21.67 Aligned_cols=12 Identities=42% Similarity=1.168 Sum_probs=9.5
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2eme_A 11 KPYVCDYCGKAF 22 (46)
T ss_dssp CSEECSSSCCEE
T ss_pred CCeECCCCChhh
Confidence 578999998763
No 147
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.36 E-value=4.3 Score=21.52 Aligned_cols=12 Identities=42% Similarity=1.021 Sum_probs=9.7
Q ss_pred hccccCCCCCCc
Q psy836 39 HAKYTCSFCGKD 50 (122)
Q Consensus 39 ~aky~Cp~Cgk~ 50 (122)
..+|.|+.||+.
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ytr_A 10 EKPYKCNECGKA 21 (46)
T ss_dssp CCTTCCTTTCCC
T ss_pred CcCcCCCCCCCc
Confidence 357999999986
No 148
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.27 E-value=2.8 Score=22.51 Aligned_cols=11 Identities=45% Similarity=1.265 Sum_probs=8.7
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2eoz_A 11 KPYSCNVCGKA 21 (46)
T ss_dssp CSEEETTTTEE
T ss_pred CCeECcccChh
Confidence 56889998875
No 149
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=55.18 E-value=4 Score=21.65 Aligned_cols=12 Identities=42% Similarity=0.944 Sum_probs=9.5
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2em9_A 11 KPYNCKECGKSF 22 (46)
T ss_dssp CSEECSSSCCEE
T ss_pred cCeECCcccccc
Confidence 578999998763
No 150
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.17 E-value=4 Score=21.74 Aligned_cols=12 Identities=42% Similarity=0.924 Sum_probs=9.5
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2em7_A 11 KPYKCEECGKGF 22 (46)
T ss_dssp CSEECSSSCCEE
T ss_pred cCccCCCccchh
Confidence 579999999853
No 151
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.16 E-value=4.9 Score=21.48 Aligned_cols=12 Identities=50% Similarity=0.935 Sum_probs=9.7
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2ytq_A 11 KPYGCSECGKAF 22 (46)
T ss_dssp CSCBCSSSCCBC
T ss_pred CCcCCCccChhh
Confidence 579999999863
No 152
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.07 E-value=4.2 Score=21.59 Aligned_cols=12 Identities=42% Similarity=0.902 Sum_probs=9.7
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2eq4_A 11 KLYNCKECGKSF 22 (46)
T ss_dssp CCCCBTTTTBCC
T ss_pred CCeECCCCCCcc
Confidence 579999999863
No 153
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.04 E-value=4.1 Score=21.72 Aligned_cols=11 Identities=45% Similarity=1.023 Sum_probs=9.1
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2ene_A 11 KPYKCNECGKV 21 (46)
T ss_dssp SSEECSSSCCE
T ss_pred CCeECCCCCch
Confidence 57899999875
No 154
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.96 E-value=3.9 Score=21.78 Aligned_cols=11 Identities=45% Similarity=1.213 Sum_probs=9.1
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2emh_A 11 RPYICTVCGKA 21 (46)
T ss_dssp CSEECTTTCCE
T ss_pred CCcCCCCCCch
Confidence 57899999876
No 155
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.89 E-value=4.1 Score=21.71 Aligned_cols=11 Identities=55% Similarity=1.256 Sum_probs=9.0
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2eml_A 11 KPYECSVCGKA 21 (46)
T ss_dssp CSEECSSSCCE
T ss_pred CCeeCCCcCCc
Confidence 57899999875
No 156
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.75 E-value=4.1 Score=21.70 Aligned_cols=11 Identities=45% Similarity=1.065 Sum_probs=9.0
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2emy_A 11 NPYECHECGKA 21 (46)
T ss_dssp CCEECSSSCCE
T ss_pred cCcCCCCCCcc
Confidence 56899999875
No 157
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.67 E-value=4 Score=21.75 Aligned_cols=12 Identities=42% Similarity=0.919 Sum_probs=9.6
Q ss_pred hccccCCCCCCc
Q psy836 39 HAKYTCSFCGKD 50 (122)
Q Consensus 39 ~aky~Cp~Cgk~ 50 (122)
..+|.|+.||+.
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eq0_A 10 EKPYKCHECGKV 21 (46)
T ss_dssp CCCEECTTTCCE
T ss_pred CCCeECCCCCch
Confidence 357999999885
No 158
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.64 E-value=4.2 Score=21.77 Aligned_cols=12 Identities=42% Similarity=0.963 Sum_probs=9.4
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~F 22 (46)
T 2eoo_A 11 RPYGCNECGKNF 22 (46)
T ss_dssp CCEECSSSCCEE
T ss_pred CCEEccccCccc
Confidence 568999998863
No 159
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.59 E-value=4.2 Score=21.77 Aligned_cols=12 Identities=33% Similarity=0.902 Sum_probs=9.6
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~F 22 (46)
T 2emf_A 11 KHFECTECGKAF 22 (46)
T ss_dssp CCEECSSSCCEE
T ss_pred CCeECCCCCchh
Confidence 578999998863
No 160
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=54.53 E-value=6.6 Score=28.58 Aligned_cols=30 Identities=20% Similarity=0.511 Sum_probs=19.9
Q ss_pred ccccCCC--CCCceeEeEEeeeeeecCcceee
Q psy836 40 AKYTCSF--CGKDSMKRSCVGIWSCKRCKRIV 69 (122)
Q Consensus 40 aky~Cp~--Cgk~~mkR~avGIW~C~~C~~~v 69 (122)
..-.||. ||.-.+=-.--.-|+|.+|+.+.
T Consensus 117 ~~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~ 148 (152)
T 3u5c_f 117 LRRECSNPTCGAGVFLANHKDRLYCGKCHSVY 148 (152)
T ss_dssp CSCBCCSTTSCSSSBEEECSSCEEESSSSSCC
T ss_pred CcCcCCCccCCCceEecccCCCcccCCCceEE
Confidence 3456999 98864333334578888888763
No 161
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.21 E-value=5.2 Score=21.37 Aligned_cols=12 Identities=42% Similarity=0.933 Sum_probs=9.7
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~F 22 (46)
T 2elz_A 11 KPYKCEDCGKGY 22 (46)
T ss_dssp SSCBCSSSCCBC
T ss_pred CCeeCcccCchh
Confidence 579999999863
No 162
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=54.20 E-value=4.3 Score=21.64 Aligned_cols=12 Identities=42% Similarity=1.041 Sum_probs=9.5
Q ss_pred hccccCCCCCCc
Q psy836 39 HAKYTCSFCGKD 50 (122)
Q Consensus 39 ~aky~Cp~Cgk~ 50 (122)
..+|.|+.||+.
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2ema_A 10 EKRYKCNECGKV 21 (46)
T ss_dssp SCCEECSSSCCE
T ss_pred CcCcCCCCCcch
Confidence 357899999886
No 163
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=54.10 E-value=4.2 Score=21.59 Aligned_cols=12 Identities=42% Similarity=0.811 Sum_probs=9.4
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2el4_A 11 KPYGCSQCAKTF 22 (46)
T ss_dssp CSEECSSSSCEE
T ss_pred CceECCCCCchh
Confidence 568999998763
No 164
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.08 E-value=4.4 Score=21.74 Aligned_cols=11 Identities=45% Similarity=1.032 Sum_probs=9.3
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2ytm_A 11 KPYKCMECGKA 21 (46)
T ss_dssp CSSSBTTTTBC
T ss_pred CCcCCCCCCch
Confidence 57999999986
No 165
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=54.00 E-value=4.6 Score=22.26 Aligned_cols=12 Identities=42% Similarity=0.891 Sum_probs=8.3
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 3 ~~~~C~~C~~~f 14 (57)
T 3uk3_C 3 SSRECSYCGKFF 14 (57)
T ss_dssp --CBCTTTCCBC
T ss_pred CCccCCCCcchh
Confidence 478999999863
No 166
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=53.93 E-value=4.1 Score=22.56 Aligned_cols=12 Identities=42% Similarity=1.096 Sum_probs=9.4
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 6 kp~~C~~C~k~F 17 (48)
T 3iuf_A 6 KPYACDICGKRY 17 (48)
T ss_dssp SCEECTTTCCEE
T ss_pred cCEECCCcCccc
Confidence 578999998753
No 167
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=53.85 E-value=4.1 Score=22.79 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=9.8
Q ss_pred hccccCCCCCCc
Q psy836 39 HAKYTCSFCGKD 50 (122)
Q Consensus 39 ~aky~Cp~Cgk~ 50 (122)
..+|.|+.||+.
T Consensus 22 ~k~~~C~~C~k~ 33 (54)
T 1yui_A 22 EQPATCPICYAV 33 (54)
T ss_dssp SCCEECTTTCCE
T ss_pred CCCccCCCCCcc
Confidence 467999999976
No 168
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.83 E-value=3.1 Score=22.12 Aligned_cols=11 Identities=45% Similarity=1.135 Sum_probs=8.8
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2eq3_A 11 KPYECNQCGKA 21 (46)
T ss_dssp CSSEETTTTEE
T ss_pred CCeECCCCChh
Confidence 56889999875
No 169
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.61 E-value=4.3 Score=21.63 Aligned_cols=12 Identities=33% Similarity=0.891 Sum_probs=9.5
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 ~~~~C~~C~k~f 22 (46)
T 2ytg_A 11 KPFKCGECGKSY 22 (46)
T ss_dssp CSEECTTTCCEE
T ss_pred CCeECCCCCccc
Confidence 578999998763
No 170
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.53 E-value=4.4 Score=21.56 Aligned_cols=12 Identities=33% Similarity=0.850 Sum_probs=9.5
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2enc_A 11 KPFKCEECGKGF 22 (46)
T ss_dssp CSEECSSSCCEE
T ss_pred CCcCCCCCCCcC
Confidence 578999998863
No 171
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.36 E-value=3.1 Score=22.19 Aligned_cols=11 Identities=36% Similarity=1.171 Sum_probs=8.7
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (45)
T 2epu_A 11 KPFECTHCGKS 21 (45)
T ss_dssp CSEEETTTTEE
T ss_pred cCccCCCCCCc
Confidence 56889998875
No 172
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.04 E-value=4.5 Score=21.35 Aligned_cols=11 Identities=36% Similarity=0.893 Sum_probs=8.9
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 9 k~~~C~~C~k~ 19 (44)
T 2emx_A 9 KPFGCSCCEKA 19 (44)
T ss_dssp CCEECSSSSCE
T ss_pred cCccCCCCCcc
Confidence 56899999875
No 173
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.92 E-value=4.6 Score=21.58 Aligned_cols=12 Identities=25% Similarity=0.639 Sum_probs=9.5
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 ~~~~C~~C~k~f 22 (46)
T 2em5_A 11 KSHQCHECGRGF 22 (46)
T ss_dssp CSEECSSSCCEE
T ss_pred CCeECCcCCCcc
Confidence 568999998863
No 174
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=52.91 E-value=2.5 Score=25.71 Aligned_cols=56 Identities=21% Similarity=0.418 Sum_probs=26.3
Q ss_pred ccccCCCCCCceeEeE----------EeeeeeecCcceeeeccee-eeec--cceeeeeeecCcCeEEe
Q psy836 40 AKYTCSFCGKDSMKRS----------CVGIWSCKRCKRIVAGGAW-DSMK--RSCVGIWSCKRCKRIVA 95 (122)
Q Consensus 40 aky~Cp~Cgk~~mkR~----------avGIW~C~~C~~~vAggAy-~~~t--~~AvtV~s~~rC~~~~A 95 (122)
.+|.|+.|++.-.... ....+.|..|++.+....- .... -.......|..|++.|.
T Consensus 7 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 75 (96)
T 2dmd_A 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASR 75 (96)
T ss_dssp CCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEES
T ss_pred cCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccC
Confidence 4567777766421111 1234667777766543211 0000 01122345788877664
No 175
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.81 E-value=4.7 Score=21.48 Aligned_cols=12 Identities=42% Similarity=0.861 Sum_probs=9.4
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2yu8_A 11 KPYKCNECGKVF 22 (46)
T ss_dssp SSEECSSSCCEE
T ss_pred CCeECCcCCchh
Confidence 568999998763
No 176
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.52 E-value=4.7 Score=21.45 Aligned_cols=11 Identities=45% Similarity=1.080 Sum_probs=9.1
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2emp_A 11 KPYMCNECGKA 21 (46)
T ss_dssp CSEECSSSCCE
T ss_pred cCeECCCCCch
Confidence 56899999886
No 177
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.46 E-value=5.4 Score=21.28 Aligned_cols=12 Identities=50% Similarity=0.988 Sum_probs=9.7
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2ytt_A 11 KPYQCSECGKSF 22 (46)
T ss_dssp CTTCCSSSCCCC
T ss_pred CCeeCCCCCccc
Confidence 579999999863
No 178
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.33 E-value=4.8 Score=21.52 Aligned_cols=12 Identities=42% Similarity=0.916 Sum_probs=9.6
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2em8_A 11 KPYKCVECGKGY 22 (46)
T ss_dssp CSEECSSSCCEE
T ss_pred CCeECcccCchh
Confidence 579999998863
No 179
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.19 E-value=4.8 Score=21.33 Aligned_cols=12 Identities=33% Similarity=0.672 Sum_probs=9.4
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2emm_A 11 RPHKCNECGKSF 22 (46)
T ss_dssp CSEECSSSCCEE
T ss_pred CCeeCCCCChhh
Confidence 578999998763
No 180
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.94 E-value=4.9 Score=21.39 Aligned_cols=11 Identities=55% Similarity=1.307 Sum_probs=9.0
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2ep2_A 11 KPYECSICGKS 21 (46)
T ss_dssp CSEECSSSCCE
T ss_pred cCcCCCCCCcc
Confidence 56899999876
No 181
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=51.65 E-value=4.8 Score=21.50 Aligned_cols=11 Identities=45% Similarity=0.984 Sum_probs=9.1
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2el6_A 11 NPYKCSQCEKS 21 (46)
T ss_dssp CSEECSSSSCE
T ss_pred CCeECCCCCcc
Confidence 56899999885
No 182
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=51.64 E-value=5.9 Score=29.18 Aligned_cols=63 Identities=13% Similarity=0.281 Sum_probs=35.2
Q ss_pred hhhHhHHHHHHHhhcc----ccCCCCCCce-eEeEEeeeeeecC--cceeeecceeeeeccceeeeeeecCcCeEEec
Q psy836 26 SLRKMVKKMEITQHAK----YTCSFCGKDS-MKRSCVGIWSCKR--CKRIVAGGAWDSMKRSCVGIWSCKRCKRIVAG 96 (122)
Q Consensus 26 slRK~v~kie~~~~ak----y~Cp~Cgk~~-mkR~avGIW~C~~--C~~~vAggAy~~~t~~AvtV~s~~rC~~~~AG 96 (122)
.-||-+++|....-.. ......+... ++-...=--.|+. |+|+|... .-+.|.|.+|+..+.-
T Consensus 5 ~~~kti~qi~~~~lg~~~k~~~f~v~atI~~i~~d~~~Y~aC~~~~CnKKv~~~--------~~g~~~CekC~~~~~~ 74 (181)
T 1l1o_C 5 TNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQ--------QNGLYRCEKCDTEFPN 74 (181)
T ss_dssp CCBCCHHHHHHHTTTSSSSCEEEEEEEEEEEECCSTTEEEBCCSTTCCCBCEEE--------TTTEEEETTTTEEESS
T ss_pred cceEEHHHHhhhccCCCCCCcEEEEEEEEEEEeCCCEEECCCCchhcCCccccC--------CCCeEECCCCCCcCCC
Confidence 4578888888765221 1122222222 2211111236999 99998731 2256889999988743
No 183
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.43 E-value=5 Score=21.33 Aligned_cols=11 Identities=45% Similarity=1.023 Sum_probs=9.0
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 ~~~~C~~C~k~ 21 (46)
T 2ytk_A 11 KPYKCNECGKV 21 (46)
T ss_dssp CSEECSSSCCE
T ss_pred CCEeCCcCCCc
Confidence 57899999875
No 184
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.23 E-value=4.9 Score=21.38 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=9.5
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 11 ~~~~C~~C~k~f 22 (46)
T 2yso_A 11 KSHQCRECGEIF 22 (46)
T ss_dssp CCEECTTTCCEE
T ss_pred CCEEccccChhh
Confidence 568999998863
No 185
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.07 E-value=3.6 Score=21.75 Aligned_cols=11 Identities=45% Similarity=1.135 Sum_probs=8.4
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 ~~~~C~~C~k~ 21 (44)
T 2eox_A 11 KSYNCNECGKA 21 (44)
T ss_dssp CCEEETTTTEE
T ss_pred CCeECcccCcc
Confidence 46888888875
No 186
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=51.06 E-value=13 Score=25.49 Aligned_cols=55 Identities=13% Similarity=0.257 Sum_probs=30.2
Q ss_pred ChhhhHhHHHHHHHhhccccCCCCCCceeEeEEeeeeeecCcceeeecceeeeeccceeeee-eecCcCe
Q psy836 24 GASLRKMVKKMEITQHAKYTCSFCGKDSMKRSCVGIWSCKRCKRIVAGGAWDSMKRSCVGIW-SCKRCKR 92 (122)
Q Consensus 24 G~slRK~v~kie~~~~aky~Cp~Cgk~~mkR~avGIW~C~~C~~~vAggAy~~~t~~AvtV~-s~~rC~~ 92 (122)
-..|+.-++.++... -.+. |....-...-+.|.|..||..+-...+ .. .|+.|+-
T Consensus 43 ~e~l~f~f~~~~~gt---~~~e--~a~L~i~~~p~~~~C~~CG~~~e~~~~---------~~~~CP~Cgs 98 (119)
T 2kdx_A 43 KSLFVSAFETFREES---LVCK--DAILDIVDEKVELECKDCSHVFKPNAL---------DYGVCEKCHS 98 (119)
T ss_dssp HHHHHHHHHHHGGGC---TTTS--SCCEEEEEECCEEECSSSSCEECSCCS---------TTCCCSSSSS
T ss_pred HHHHHHHHHHHHhCC---hhhc--CcEEEEEeccceEEcCCCCCEEeCCCC---------CCCcCccccC
Confidence 355666665553321 0111 333334566678999999888665332 12 3888863
No 187
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=50.96 E-value=7.8 Score=29.29 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=18.5
Q ss_pred ccccCCCCCCceeEeEEeeeeeecCcce
Q psy836 40 AKYTCSFCGKDSMKRSCVGIWSCKRCKR 67 (122)
Q Consensus 40 aky~Cp~Cgk~~mkR~avGIW~C~~C~~ 67 (122)
..|.|+.||-.--. .--|.||-|+-
T Consensus 170 ~~~~C~~CG~i~~g---~~p~~CP~C~~ 194 (202)
T 1yuz_A 170 KFHLCPICGYIHKG---EDFEKCPICFR 194 (202)
T ss_dssp CEEECSSSCCEEES---SCCSBCTTTCC
T ss_pred cEEEECCCCCEEcC---cCCCCCCCCCC
Confidence 47999999987432 23399988875
No 188
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.89 E-value=5 Score=21.25 Aligned_cols=11 Identities=45% Similarity=0.957 Sum_probs=9.0
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 ~~~~C~~C~k~ 21 (46)
T 2en8_A 11 KSHTCDECGKN 21 (46)
T ss_dssp SSEECTTTCCE
T ss_pred CCeECCCcCcc
Confidence 56899999876
No 189
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.67 E-value=5.3 Score=21.25 Aligned_cols=11 Identities=55% Similarity=1.141 Sum_probs=9.1
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2ytd_A 11 KPYKCSECGKA 21 (46)
T ss_dssp CSEECSSSCCE
T ss_pred cCeECCCCCCe
Confidence 57899999875
No 190
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=50.58 E-value=6.9 Score=31.78 Aligned_cols=54 Identities=20% Similarity=0.535 Sum_probs=31.0
Q ss_pred ccccCCCCCCce---eEeE---Eeee--e--------------eecCcceeeeccee-eeec------cceeeeeeecCc
Q psy836 40 AKYTCSFCGKDS---MKRS---CVGI--W--------------SCKRCKRIVAGGAW-DSMK------RSCVGIWSCKRC 90 (122)
Q Consensus 40 aky~Cp~Cgk~~---mkR~---avGI--W--------------~C~~C~~~vAggAy-~~~t------~~AvtV~s~~rC 90 (122)
....||.||..- +-+. ..|. = .|+.|+.. -+-.| ++.. ..++-+-+|.+|
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~-~~l~y~~~e~~~~~~~~~~~r~e~C~~C 259 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES-KHLAYLSLEHDGQPAEKAVLRAETCPSC 259 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC-SCCEEECCCC-CCCSTTCSEEEEEETTT
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC-CCeeEEEecCccccCCCcceEEEEcccc
Confidence 357899999873 2221 1232 2 46667665 12222 2333 377889999999
Q ss_pred CeEE
Q psy836 91 KRIV 94 (122)
Q Consensus 91 ~~~~ 94 (122)
+.=+
T Consensus 260 ~~Yl 263 (309)
T 2fiy_A 260 QGYL 263 (309)
T ss_dssp TEEE
T ss_pred cchH
Confidence 8433
No 191
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=50.34 E-value=5.9 Score=21.79 Aligned_cols=11 Identities=45% Similarity=1.044 Sum_probs=8.4
Q ss_pred cccCCCCCCce
Q psy836 41 KYTCSFCGKDS 51 (122)
Q Consensus 41 ky~Cp~Cgk~~ 51 (122)
+|.|+.||+.-
T Consensus 1 p~~C~~C~~~f 11 (57)
T 1bbo_A 1 KYICEECGIRX 11 (57)
T ss_dssp CCBCTTTCCBC
T ss_pred CCcCCCCcCcC
Confidence 57899998763
No 192
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=49.52 E-value=6.3 Score=22.08 Aligned_cols=12 Identities=8% Similarity=0.135 Sum_probs=9.6
Q ss_pred hccccCCCCCCc
Q psy836 39 HAKYTCSFCGKD 50 (122)
Q Consensus 39 ~aky~Cp~Cgk~ 50 (122)
..+|.|+.||+.
T Consensus 39 ~k~~~C~~C~k~ 50 (54)
T 2eps_A 39 ERPHKCQVWVSG 50 (54)
T ss_dssp CCCCCSSSSCCS
T ss_pred CCCccCCCCCCC
Confidence 357999999975
No 193
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=49.51 E-value=6.4 Score=21.96 Aligned_cols=11 Identities=18% Similarity=0.818 Sum_probs=8.7
Q ss_pred cccCCCCCCce
Q psy836 41 KYTCSFCGKDS 51 (122)
Q Consensus 41 ky~Cp~Cgk~~ 51 (122)
+|.|+.|++.-
T Consensus 2 ~~~C~~C~~~f 12 (60)
T 2adr_A 2 SFVCEVCTRAF 12 (60)
T ss_dssp CBCCTTTCCCB
T ss_pred cCcCCCCcccc
Confidence 68899998763
No 194
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.99 E-value=5.8 Score=21.07 Aligned_cols=12 Identities=33% Similarity=0.833 Sum_probs=9.5
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.|++.-
T Consensus 11 ~~~~C~~C~k~f 22 (46)
T 2ep0_A 11 KPYKCDVCHKSF 22 (46)
T ss_dssp CSEECSSSCCEE
T ss_pred CCeeCcccCccc
Confidence 578999998763
No 195
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=48.96 E-value=14 Score=26.64 Aligned_cols=73 Identities=25% Similarity=0.571 Sum_probs=38.3
Q ss_pred hhHhHHHHHHHh-----hccccCCCCCCceeEeEEeeeeeecCcceeee--cceeeeeccceeeeeeecCcCeE----Ee
Q psy836 27 LRKMVKKMEITQ-----HAKYTCSFCGKDSMKRSCVGIWSCKRCKRIVA--GGAWDSMKRSCVGIWSCKRCKRI----VA 95 (122)
Q Consensus 27 lRK~v~kie~~~-----~aky~Cp~Cgk~~mkR~avGIW~C~~C~~~vA--ggAy~~~t~~AvtV~s~~rC~~~----~A 95 (122)
+|+...+++... .....|..|+++.--=.+.| -.|..|...|= ++.|+.. ...-.+|-|.-|-+. ..
T Consensus 36 i~kL~~~l~~~k~~~~~~~~~~C~~C~~~~g~l~~~g-~~C~~C~~~VC~~C~~~~~~-~~~~~~W~C~vC~k~rel~~k 113 (134)
T 1zbd_B 36 IGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSAS-VVCEDCKKNVCTKCGVETSN-NRPHPVWLCKICLEQREVWKR 113 (134)
T ss_dssp HHHHHHHHHHHHHTCCSCSSSBCSSSCCBCSTTSCCE-EECTTTCCEEETTSEEECCC-SSSSCCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCccccccCCCcccccCCC-CCCCCCCcccccccCCccCC-CCCccceechhhHHHHHHHHh
Confidence 344444444443 56778999998863111233 46777776652 2222221 123445666666543 24
Q ss_pred cccccc
Q psy836 96 GGAWVY 101 (122)
Q Consensus 96 GGAy~~ 101 (122)
.|+|.+
T Consensus 114 SG~Wf~ 119 (134)
T 1zbd_B 114 SGAWFF 119 (134)
T ss_dssp TSHHHH
T ss_pred hhHHHH
Confidence 555555
No 196
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=48.96 E-value=5.4 Score=24.22 Aligned_cols=12 Identities=42% Similarity=1.123 Sum_probs=9.8
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 3 Kpy~C~~C~k~F 14 (60)
T 4gzn_C 3 RPFFCNFCGKTY 14 (60)
T ss_dssp CCEECTTTCCEE
T ss_pred CCccCCCCCCEe
Confidence 579999999874
No 197
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=48.68 E-value=3.4 Score=26.08 Aligned_cols=26 Identities=31% Similarity=0.649 Sum_probs=12.5
Q ss_pred cccCCCCCCc----eeEeEEeeeeeecCccee
Q psy836 41 KYTCSFCGKD----SMKRSCVGIWSCKRCKRI 68 (122)
Q Consensus 41 ky~Cp~Cgk~----~mkR~avGIW~C~~C~~~ 68 (122)
.|.|-.||+. .+++. -|| +|+-||..
T Consensus 3 iY~C~rCg~~fs~~el~~l-P~I-rCpyCGyr 32 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVL-PGV-RCPYCGYK 32 (48)
T ss_dssp --CCCCTTTTCCCCCSCCC-SSS-CCTTTCCS
T ss_pred EEEeeccCCCccHHHHhhC-CCc-ccCccCcE
Confidence 4666666665 23333 233 56666654
No 198
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.64 E-value=4.1 Score=21.70 Aligned_cols=11 Identities=45% Similarity=1.111 Sum_probs=8.7
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 k~~~C~~C~k~ 21 (46)
T 2ysp_A 11 KPYKCEKCGKG 21 (46)
T ss_dssp CSEEETTTTEE
T ss_pred CCeECCCCCCc
Confidence 56889999875
No 199
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=48.57 E-value=5.6 Score=24.36 Aligned_cols=16 Identities=31% Similarity=0.812 Sum_probs=11.0
Q ss_pred eecCcCeEEecccccc
Q psy836 86 SCKRCKRIVAGGAWVY 101 (122)
Q Consensus 86 s~~rC~~~~AGGAy~~ 101 (122)
.|..|++.+.|+.|..
T Consensus 48 ~C~~C~~~L~~~~f~~ 63 (77)
T 2egq_A 48 HCKKCSVNLANKRFVF 63 (77)
T ss_dssp BCSSSCCBCTTSCCCE
T ss_pred EehhcCCCCCCCccEe
Confidence 3777888887776543
No 200
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=47.68 E-value=12 Score=22.34 Aligned_cols=9 Identities=22% Similarity=0.567 Sum_probs=5.7
Q ss_pred cCCCCCCce
Q psy836 43 TCSFCGKDS 51 (122)
Q Consensus 43 ~Cp~Cgk~~ 51 (122)
.|+.|++.-
T Consensus 4 ~C~~C~~~I 12 (65)
T 2iyb_E 4 VCQGCHNAI 12 (65)
T ss_dssp ECTTTSSEE
T ss_pred CCcCCCCee
Confidence 467777653
No 201
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=47.51 E-value=6.5 Score=20.85 Aligned_cols=11 Identities=9% Similarity=-0.012 Sum_probs=8.7
Q ss_pred hhccccCCCCC
Q psy836 38 QHAKYTCSFCG 48 (122)
Q Consensus 38 ~~aky~Cp~Cg 48 (122)
....|.||.||
T Consensus 35 ~~~~~~C~~cg 45 (45)
T 2epq_A 35 GSVGKSGPSSG 45 (45)
T ss_dssp CCCCCCCCCCC
T ss_pred CCCCCCCcCCC
Confidence 44679999997
No 202
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=47.38 E-value=4.6 Score=26.20 Aligned_cols=13 Identities=46% Similarity=0.935 Sum_probs=10.2
Q ss_pred hhccccCCCCCCc
Q psy836 38 QHAKYTCSFCGKD 50 (122)
Q Consensus 38 ~~aky~Cp~Cgk~ 50 (122)
+.++|+||.|+..
T Consensus 23 ~~akY~CPrC~~r 35 (59)
T 1x4s_A 23 QPARYTCPRCNAP 35 (59)
T ss_dssp EEECEECTTTCCE
T ss_pred CCccccCcCCCCC
Confidence 5689999999754
No 203
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=47.36 E-value=7.3 Score=18.77 Aligned_cols=10 Identities=40% Similarity=1.431 Sum_probs=7.6
Q ss_pred cccCC--CCCCc
Q psy836 41 KYTCS--FCGKD 50 (122)
Q Consensus 41 ky~Cp--~Cgk~ 50 (122)
+|.|+ .||+.
T Consensus 2 p~~C~~~~C~k~ 13 (31)
T 1sp2_A 2 PFMCTWSYCGKR 13 (31)
T ss_dssp CCBCCSTTCCCB
T ss_pred CcCCcCCCCCcc
Confidence 57887 78875
No 204
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=46.93 E-value=6.2 Score=28.57 Aligned_cols=31 Identities=16% Similarity=0.380 Sum_probs=22.9
Q ss_pred ccccCCCCCCceeEeE----EeeeeeecCcceeee
Q psy836 40 AKYTCSFCGKDSMKRS----CVGIWSCKRCKRIVA 70 (122)
Q Consensus 40 aky~Cp~Cgk~~mkR~----avGIW~C~~C~~~vA 70 (122)
.-..||.||....-+. ..-.|.|+.|+....
T Consensus 23 ~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~ 57 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 57 (133)
T ss_dssp CCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCC
T ss_pred CCeeCCCCCCEeeECccCCCceeEEECCCCCCcEE
Confidence 3467999999864443 245899999998654
No 205
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=46.67 E-value=4.7 Score=32.92 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=20.9
Q ss_pred ccCCCCCCc--eeEeE-EeeeeeecCcceeeecceeee
Q psy836 42 YTCSFCGKD--SMKRS-CVGIWSCKRCKRIVAGGAWDS 76 (122)
Q Consensus 42 y~Cp~Cgk~--~mkR~-avGIW~C~~C~~~vAggAy~~ 76 (122)
..||||+-. ++.-. .-|+|+|-.||. .|++.++
T Consensus 35 ~~CPfh~ektpSf~V~~~k~~~~CFgCg~--gGd~i~f 70 (407)
T 2au3_A 35 TNCPFHPDDTPSFYVSPSKQIFKCFGCGV--GGDAIKF 70 (407)
T ss_dssp ECCSSSCCSSCCEEEETTTTEEEETTTCC--EECHHHH
T ss_pred eeCcCCCCCCCeEEEECCCCEEEECCCCC--CCCHHHH
Confidence 469999743 34322 347899888874 4565554
No 206
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=45.76 E-value=15 Score=21.28 Aligned_cols=9 Identities=44% Similarity=1.202 Sum_probs=4.4
Q ss_pred cccCCCCCC
Q psy836 41 KYTCSFCGK 49 (122)
Q Consensus 41 ky~Cp~Cgk 49 (122)
+|.|+.||+
T Consensus 68 ~~~C~~C~k 76 (79)
T 2dlk_A 68 DYICEFSGP 76 (79)
T ss_dssp CCSCCSSSC
T ss_pred CeeCCCCCC
Confidence 455555544
No 207
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.61 E-value=5 Score=21.25 Aligned_cols=11 Identities=45% Similarity=1.023 Sum_probs=8.8
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 ~~~~C~~C~k~ 21 (46)
T 2eoe_A 11 KPYKCNECGKV 21 (46)
T ss_dssp CSSEETTTTEE
T ss_pred CCeECCCcChh
Confidence 56889999875
No 208
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.49 E-value=4.9 Score=21.37 Aligned_cols=11 Identities=45% Similarity=1.074 Sum_probs=8.6
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 ~~~~C~~C~k~ 21 (46)
T 2en6_A 11 KPYGCNECGKT 21 (46)
T ss_dssp CCEEETTTTEE
T ss_pred cCeECCCCCcc
Confidence 56889988875
No 209
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=45.37 E-value=6.2 Score=22.21 Aligned_cols=17 Identities=41% Similarity=0.731 Sum_probs=14.7
Q ss_pred cccChhhhHhHHHHHHH
Q psy836 21 TRYGASLRKMVKKMEIT 37 (122)
Q Consensus 21 ~RYG~slRK~v~kie~~ 37 (122)
.|||.-||++-++.+.+
T Consensus 9 ~rYGReLRRMSDEF~~s 25 (27)
T 2bzw_B 9 QRYGRELRRMSDEFEGS 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHhHHHHhh
Confidence 48999999999988864
No 210
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=44.65 E-value=1.1e+02 Score=23.80 Aligned_cols=56 Identities=13% Similarity=0.256 Sum_probs=29.8
Q ss_pred ccccCCCCCCceeEeEEeeeeeecCcceeeecceeeeeccceeeeeeecCcCeEEecc
Q psy836 40 AKYTCSFCGKDSMKRSCVGIWSCKRCKRIVAGGAWDSMKRSCVGIWSCKRCKRIVAGG 97 (122)
Q Consensus 40 aky~Cp~Cgk~~mkR~avGIW~C~~C~~~vAggAy~~~t~~AvtV~s~~rC~~~~AGG 97 (122)
....||.||.. +.-. .-.-..+.++.-+..+.......-...+.-|..|+..+..-
T Consensus 11 ~~~~C~~Cg~~-~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~Cg~v~~~~ 66 (416)
T 4e2x_A 11 PPTACRVCGGG-VQEF-LDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQLTE 66 (416)
T ss_dssp -CEECTTTSCE-EEEE-EEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEEESS
T ss_pred cCCcCCCCCCe-eeee-eECCCCCccccCCChhhcCccceecceEEECCCCCceeecC
Confidence 35679999998 4322 22222333322221111113444466778899999887643
No 211
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=44.64 E-value=6.6 Score=27.82 Aligned_cols=25 Identities=20% Similarity=0.531 Sum_probs=17.7
Q ss_pred cccCCCCCCceeEeEEeeeeeecCccee
Q psy836 41 KYTCSFCGKDSMKRSCVGIWSCKRCKRI 68 (122)
Q Consensus 41 ky~Cp~Cgk~~mkR~avGIW~C~~C~~~ 68 (122)
.-.||.||...+ -.-.++|.+||..
T Consensus 16 H~lCrRCG~~sf---H~qK~~CgkCGYp 40 (97)
T 2zkr_2 16 HTLCRRCGSKAY---HLQKSTCGKCGYP 40 (97)
T ss_dssp EECCTTTCSSCE---ETTSCCBTTTCTT
T ss_pred CCcCCCCCCccC---cCccccCcccCCc
Confidence 446999999877 3345688777753
No 212
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.87 E-value=5.4 Score=21.20 Aligned_cols=11 Identities=36% Similarity=0.999 Sum_probs=8.6
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 11 ~~~~C~~C~k~ 21 (46)
T 2en1_A 11 KPFKCEECGKR 21 (46)
T ss_dssp CSEEETTTTEE
T ss_pred CCeeCCCCCcc
Confidence 46888888875
No 213
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=43.24 E-value=7.5 Score=22.52 Aligned_cols=13 Identities=15% Similarity=0.710 Sum_probs=10.0
Q ss_pred hccccCCCCCCce
Q psy836 39 HAKYTCSFCGKDS 51 (122)
Q Consensus 39 ~aky~Cp~Cgk~~ 51 (122)
..+|.|+.||+.-
T Consensus 47 ~~~~~C~~C~~~f 59 (73)
T 1f2i_G 47 QKPFQCRICMRNF 59 (73)
T ss_dssp CCCEECTTTCCEE
T ss_pred CCCeECCCCCchh
Confidence 4579999999753
No 214
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=43.01 E-value=23 Score=21.55 Aligned_cols=13 Identities=31% Similarity=0.715 Sum_probs=8.3
Q ss_pred ccccCCCCCCcee
Q psy836 40 AKYTCSFCGKDSM 52 (122)
Q Consensus 40 aky~Cp~Cgk~~m 52 (122)
....||.||....
T Consensus 8 ~~~~Cp~Cg~~~a 20 (50)
T 1tfi_A 8 DLFTCGKCKKKNC 20 (50)
T ss_dssp CCSCCSSSCSSCE
T ss_pred CccCCCCCCCCEE
Confidence 4556777776643
No 215
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.88 E-value=13 Score=23.29 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=13.9
Q ss_pred hhhHhHHHHHHHhhccccCCCCCCce
Q psy836 26 SLRKMVKKMEITQHAKYTCSFCGKDS 51 (122)
Q Consensus 26 slRK~v~kie~~~~aky~Cp~Cgk~~ 51 (122)
.|+..+ .+......+|.|++||+.-
T Consensus 40 ~L~~H~-~~h~~~~~~~~C~~C~k~F 64 (98)
T 2gqj_A 40 GLKKHM-EVCQKLQDALKCQHCRKQF 64 (98)
T ss_dssp HHHHHH-HHHHHHHHHHSCSSSCCCC
T ss_pred HHHHHH-HHHcCCCCCEECCCCCCcc
Confidence 444443 2333223578888888753
No 216
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=41.72 E-value=9.4 Score=29.70 Aligned_cols=29 Identities=17% Similarity=0.551 Sum_probs=22.3
Q ss_pred ccccCCCCCCceeEeEEeeeeeecCccee
Q psy836 40 AKYTCSFCGKDSMKRSCVGIWSCKRCKRI 68 (122)
Q Consensus 40 aky~Cp~Cgk~~mkR~avGIW~C~~C~~~ 68 (122)
..-.||.||........--...|+.|+..
T Consensus 106 ~~~fC~~CG~~~~~~~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 106 SHKYCGYCGHEMYPSKTEWAMLCSHCRER 134 (269)
T ss_dssp TTSBCTTTCCBEEECSSSSCEEESSSSCE
T ss_pred cCCccccCCCcCccCCCceeeeCCCCCCE
Confidence 45579999999866655556789999875
No 217
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=41.25 E-value=14 Score=24.67 Aligned_cols=10 Identities=40% Similarity=1.159 Sum_probs=6.9
Q ss_pred cccCCCCCCc
Q psy836 41 KYTCSFCGKD 50 (122)
Q Consensus 41 ky~Cp~Cgk~ 50 (122)
.-.||+||.+
T Consensus 47 g~~CPvCgs~ 56 (112)
T 1l8d_A 47 KGKCPVCGRE 56 (112)
T ss_dssp SEECTTTCCE
T ss_pred CCCCCCCCCc
Confidence 4468888765
No 218
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=41.20 E-value=21 Score=26.46 Aligned_cols=41 Identities=15% Similarity=0.363 Sum_probs=26.3
Q ss_pred hhhhHhHHHHHHHhh------ccccCCCCCCceeEeEEeeeeeecCcce
Q psy836 25 ASLRKMVKKMEITQH------AKYTCSFCGKDSMKRSCVGIWSCKRCKR 67 (122)
Q Consensus 25 ~slRK~v~kie~~~~------aky~Cp~Cgk~~mkR~avGIW~C~~C~~ 67 (122)
..+++.+++++...- ..|.|+.||-.--....= -.||-|+-
T Consensus 133 ~~~~~~l~~l~~~~~~~~~~~~~~~C~~CG~~~~g~~~p--~~CP~C~~ 179 (191)
T 1lko_A 133 KRFLDFARNIKEGRVFLREQATKWRCRNCGYVHEGTGAP--ELCPACAH 179 (191)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEEEEETTTCCEEEEEECC--SBCTTTCC
T ss_pred HHHHHHHHhhhcccccccCCCceEEECCCCCEeeCCCCC--CCCCCCcC
Confidence 345666777776432 279999999874422221 28999986
No 219
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.63 E-value=8.1 Score=24.57 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=9.8
Q ss_pred hccccCCCCCCc
Q psy836 39 HAKYTCSFCGKD 50 (122)
Q Consensus 39 ~aky~Cp~Cgk~ 50 (122)
.++|+||.|+..
T Consensus 21 ~~kY~CPrC~~~ 32 (56)
T 2yqq_A 21 KPKYRCPACRVP 32 (56)
T ss_dssp CCSEECTTTCCE
T ss_pred CCeeeCCCCCCC
Confidence 589999999753
No 220
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.46 E-value=14 Score=21.32 Aligned_cols=12 Identities=25% Similarity=0.670 Sum_probs=6.0
Q ss_pred hccccCC-CCCCc
Q psy836 39 HAKYTCS-FCGKD 50 (122)
Q Consensus 39 ~aky~Cp-~Cgk~ 50 (122)
..+|.|+ .||+.
T Consensus 34 ~~p~~C~~~C~k~ 46 (66)
T 2eod_A 34 RLPVACPNQCGVG 46 (66)
T ss_dssp SSEEECTTCCSCC
T ss_pred CcCccCCcccCcc
Confidence 3445555 55554
No 221
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=40.43 E-value=13 Score=27.85 Aligned_cols=11 Identities=18% Similarity=0.585 Sum_probs=7.4
Q ss_pred eeeecCcCeEE
Q psy836 84 IWSCKRCKRIV 94 (122)
Q Consensus 84 V~s~~rC~~~~ 94 (122)
.-.|..||..|
T Consensus 165 f~~C~~C~~~w 175 (178)
T 3po3_S 165 FCTCEACGNRW 175 (178)
T ss_dssp CEEETTTCCEE
T ss_pred EEEcCCCCCee
Confidence 34477888776
No 222
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=40.38 E-value=6.8 Score=18.16 Aligned_cols=10 Identities=40% Similarity=1.185 Sum_probs=6.0
Q ss_pred cccCC--CCCCc
Q psy836 41 KYTCS--FCGKD 50 (122)
Q Consensus 41 ky~Cp--~Cgk~ 50 (122)
+|.|+ .||+.
T Consensus 2 ~~~C~~~~C~k~ 13 (29)
T 2ab3_A 2 VYVCHFENCGRS 13 (29)
T ss_dssp CEEECSTTTCEE
T ss_pred CCCCcCCcCcCc
Confidence 45666 66653
No 223
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=40.05 E-value=11 Score=18.06 Aligned_cols=11 Identities=36% Similarity=0.890 Sum_probs=8.2
Q ss_pred ccccCC--CCCCc
Q psy836 40 AKYTCS--FCGKD 50 (122)
Q Consensus 40 aky~Cp--~Cgk~ 50 (122)
.+|.|+ .||+.
T Consensus 2 k~~~C~~~~C~k~ 14 (32)
T 1zfd_A 2 RPYSCDHPGCDKA 14 (32)
T ss_dssp CSBCCCCTTCCCC
T ss_pred CCCcCcCCCCCCc
Confidence 468888 78875
No 224
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=39.57 E-value=9.6 Score=22.24 Aligned_cols=13 Identities=38% Similarity=0.792 Sum_probs=10.3
Q ss_pred hccccCCCCCCce
Q psy836 39 HAKYTCSFCGKDS 51 (122)
Q Consensus 39 ~aky~Cp~Cgk~~ 51 (122)
..+|.|+.|++.-
T Consensus 12 ~k~~~C~~C~k~f 24 (72)
T 1x6e_A 12 EKPYGCVECGKAF 24 (72)
T ss_dssp CCCEECSSSCCEE
T ss_pred CCCccCCCCCCcc
Confidence 3679999999863
No 225
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.16 E-value=21 Score=20.90 Aligned_cols=12 Identities=42% Similarity=1.265 Sum_probs=9.2
Q ss_pred hccccCCCCCCc
Q psy836 39 HAKYTCSFCGKD 50 (122)
Q Consensus 39 ~aky~Cp~Cgk~ 50 (122)
..+|.|+.||+.
T Consensus 36 ~~~~~C~~C~k~ 47 (78)
T 2d9h_A 36 ALRFPCEFCGKR 47 (78)
T ss_dssp TCCEECTTTCCE
T ss_pred CcccCCCCCCch
Confidence 457888888875
No 226
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=38.34 E-value=13 Score=27.76 Aligned_cols=26 Identities=23% Similarity=0.769 Sum_probs=18.3
Q ss_pred ccCCCCCCc-e-eEeEEeeeeeecCcceeeec
Q psy836 42 YTCSFCGKD-S-MKRSCVGIWSCKRCKRIVAG 71 (122)
Q Consensus 42 y~Cp~Cgk~-~-mkR~avGIW~C~~C~~~vAg 71 (122)
-.|+.|++. . ++|. .||..||..+=+
T Consensus 162 ~~C~~C~~~F~~~~rr----hhCr~CG~v~C~ 189 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRK----HHCRNCGQVFCG 189 (220)
T ss_dssp SBCTTTCCBCCSSSCC----EECTTTCCEECS
T ss_pred CccCCCCCccCCcccc----cccCCcCCEECh
Confidence 479999876 2 3333 699999988643
No 227
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=37.76 E-value=10 Score=24.52 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=9.8
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
..|.|+.||+.-
T Consensus 27 ~~h~C~~Cgk~F 38 (85)
T 2lv2_A 27 ECHLCPVCGESF 38 (85)
T ss_dssp TTEECTTSCCEE
T ss_pred CCEECCCCCCCc
Confidence 569999999873
No 228
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=37.51 E-value=11 Score=23.49 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=10.9
Q ss_pred hccccCCCCCCcee
Q psy836 39 HAKYTCSFCGKDSM 52 (122)
Q Consensus 39 ~aky~Cp~Cgk~~m 52 (122)
..+|.|+.||+.-.
T Consensus 11 ekpy~C~~CgK~F~ 24 (66)
T 2epp_A 11 AGILPCGLCGKVFT 24 (66)
T ss_dssp CCCCCCTTTCCCCS
T ss_pred ccCcCCCCCCCccC
Confidence 36799999998643
No 229
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=36.70 E-value=7.6 Score=34.29 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=9.5
Q ss_pred hhhHhHHHHHHH------hhccccCCCCCCcee-EeEEeeeeeecCccee
Q psy836 26 SLRKMVKKMEIT------QHAKYTCSFCGKDSM-KRSCVGIWSCKRCKRI 68 (122)
Q Consensus 26 slRK~v~kie~~------~~aky~Cp~Cgk~~m-kR~avGIW~C~~C~~~ 68 (122)
.+++.|+.+... -+.--.||.||.... ..... -|.||.||..
T Consensus 519 a~~~lv~~~~~~i~Y~~~n~~~~~C~~CGy~~~~~~~~~-~~~CP~Cg~~ 567 (605)
T 1h7b_A 519 GLEAVWDYAAQHLDYFGVNMPVDKCFTCGSTHEMTPTEN-GFVCSICGET 567 (605)
T ss_dssp HHHHHHHHHHHHCSEEEEECCEEET-------------------------
T ss_pred HHHHHHHHHHhCCCeEEeCCCCccCcccCCcCccCcccc-CCcCCCCCCC
Confidence 566667766541 112235999997542 33322 2999999974
No 230
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=36.47 E-value=11 Score=21.72 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=9.6
Q ss_pred hccccCCCCCCc
Q psy836 39 HAKYTCSFCGKD 50 (122)
Q Consensus 39 ~aky~Cp~Cgk~ 50 (122)
..+|.|+.|++.
T Consensus 7 ~~~~~C~~C~k~ 18 (70)
T 1x5w_A 7 GHPEKCSECSYS 18 (70)
T ss_dssp CCSEECSSSSCE
T ss_pred CCCeECCCCCcc
Confidence 357899999986
No 231
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=36.31 E-value=21 Score=22.83 Aligned_cols=9 Identities=22% Similarity=0.785 Sum_probs=4.2
Q ss_pred ccccCCCCC
Q psy836 40 AKYTCSFCG 48 (122)
Q Consensus 40 aky~Cp~Cg 48 (122)
.+|.|+.||
T Consensus 33 ~~~~C~~C~ 41 (96)
T 2ctd_A 33 GSVSCPTCQ 41 (96)
T ss_dssp SCEECTTTC
T ss_pred CCcCCCCCC
Confidence 344454444
No 232
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=35.73 E-value=14 Score=21.59 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=10.4
Q ss_pred hccccCCCCCCce
Q psy836 39 HAKYTCSFCGKDS 51 (122)
Q Consensus 39 ~aky~Cp~Cgk~~ 51 (122)
...|.|+.|++.-
T Consensus 15 ~~~~~C~~C~k~f 27 (74)
T 2lce_A 15 DKPYKCDRCQASF 27 (74)
T ss_dssp CCSBCCTTSSCCB
T ss_pred CCCeECCCCCcee
Confidence 4679999999863
No 233
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=35.11 E-value=3.4 Score=27.59 Aligned_cols=40 Identities=25% Similarity=0.679 Sum_probs=26.6
Q ss_pred hhhhHhHHHHHHHhhccccCCCCCCceeEeEEeeeeeecCcce
Q psy836 25 ASLRKMVKKMEITQHAKYTCSFCGKDSMKRSCVGIWSCKRCKR 67 (122)
Q Consensus 25 ~slRK~v~kie~~~~aky~Cp~Cgk~~mkR~avGIW~C~~C~~ 67 (122)
++|..+...-+...|..+.|..|++.-+... -|+|..|--
T Consensus 5 ~~~~~~~~~~~~~~H~~~~Cd~C~~~pI~G~---RykC~~C~d 44 (82)
T 2fc7_A 5 SSGQQMQAESGFVQHVGFKCDNCGIEPIQGV---RWHCQDCPP 44 (82)
T ss_dssp CCCSSSCSSTTSCEESSCCCSSSCCSSEESC---EEEESSSCS
T ss_pred cchhhhhccccCCeeCcCCCCCCCCCcceec---eEECCcCCC
Confidence 4455555555666788899999997543221 299988864
No 234
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=35.09 E-value=14 Score=22.20 Aligned_cols=30 Identities=30% Similarity=0.700 Sum_probs=17.2
Q ss_pred ccccCCCCCCc-----eeE---eEEe----eeeeecCcceee
Q psy836 40 AKYTCSFCGKD-----SMK---RSCV----GIWSCKRCKRIV 69 (122)
Q Consensus 40 aky~Cp~Cgk~-----~mk---R~av----GIW~C~~C~~~v 69 (122)
.+|.|+.|++. .+. +.-. ..+.|..|++.+
T Consensus 34 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f 75 (95)
T 2yt9_A 34 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGF 75 (95)
T ss_dssp CSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCB
T ss_pred CCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchh
Confidence 46788888753 111 1111 347788887764
No 235
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=35.06 E-value=7.3 Score=26.79 Aligned_cols=11 Identities=45% Similarity=1.126 Sum_probs=0.0
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.|++.
T Consensus 20 ~~~~C~~C~~~ 30 (190)
T 2i13_A 20 KPYACPECGKS 30 (190)
T ss_dssp -----------
T ss_pred CCCcCCCCccc
Confidence 34566666553
No 236
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=34.31 E-value=14 Score=20.57 Aligned_cols=11 Identities=18% Similarity=0.730 Sum_probs=8.3
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
++|.||.|...
T Consensus 2 ~k~~CpvCk~q 12 (28)
T 2jvx_A 2 SDFCCPKCQYQ 12 (28)
T ss_dssp CCEECTTSSCE
T ss_pred CcccCcccccc
Confidence 57889988754
No 237
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=34.11 E-value=32 Score=19.61 Aligned_cols=26 Identities=31% Similarity=0.724 Sum_probs=15.1
Q ss_pred cCCCCCCce--eEeE-EeeeeeecCccee
Q psy836 43 TCSFCGKDS--MKRS-CVGIWSCKRCKRI 68 (122)
Q Consensus 43 ~Cp~Cgk~~--mkR~-avGIW~C~~C~~~ 68 (122)
.||.|+.+- +.+. ..=.=.|..||..
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 599999883 4443 2223356666653
No 238
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=33.55 E-value=9 Score=21.51 Aligned_cols=12 Identities=33% Similarity=1.127 Sum_probs=9.6
Q ss_pred eeeeeecCccee
Q psy836 57 VGIWSCKRCKRI 68 (122)
Q Consensus 57 vGIW~C~~C~~~ 68 (122)
.|.|.|+.|+..
T Consensus 4 ~gDW~C~~C~~~ 15 (33)
T 2k1p_A 4 ANDWQCKTCSNV 15 (33)
T ss_dssp SSSCBCSSSCCB
T ss_pred CCCcccCCCCCc
Confidence 578999988754
No 239
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=33.52 E-value=20 Score=28.17 Aligned_cols=25 Identities=32% Similarity=0.676 Sum_probs=15.9
Q ss_pred ccCCCCCCceeEeE--EeeeeeecCcc
Q psy836 42 YTCSFCGKDSMKRS--CVGIWSCKRCK 66 (122)
Q Consensus 42 y~Cp~Cgk~~mkR~--avGIW~C~~C~ 66 (122)
-.||.||.+-.+-. .=+.|-|+.|-
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 37999998743322 23467777774
No 240
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.19 E-value=14 Score=20.45 Aligned_cols=12 Identities=17% Similarity=0.512 Sum_probs=9.2
Q ss_pred ccccCCC--CCCce
Q psy836 40 AKYTCSF--CGKDS 51 (122)
Q Consensus 40 aky~Cp~--Cgk~~ 51 (122)
.+|.|++ ||+.-
T Consensus 8 kp~~C~~~~C~k~F 21 (38)
T 2eln_A 8 ILLKCPTDGCDYST 21 (38)
T ss_dssp CCEECSSSSCCCEE
T ss_pred CCCCCCCCCCCCcc
Confidence 5799986 98863
No 241
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=33.06 E-value=20 Score=29.02 Aligned_cols=24 Identities=17% Similarity=0.546 Sum_probs=16.7
Q ss_pred cCCCCCCceeEeEEe-----eeeeecCcce
Q psy836 43 TCSFCGKDSMKRSCV-----GIWSCKRCKR 67 (122)
Q Consensus 43 ~Cp~Cgk~~mkR~av-----GIW~C~~C~~ 67 (122)
.||.||.+- +|... ..|-|+.|.+
T Consensus 253 pC~~CGt~I-~~~~~g~~gRsTyfCp~~~~ 281 (287)
T 3w0f_A 253 NCDQCHSKI-TVCRFGENSRMTYFCPHCQK 281 (287)
T ss_dssp BCTTTCCBC-EEECSSTTCCCEEECTTTSC
T ss_pred CCCCCCCEE-EEEEecCCCCCEEECCCccc
Confidence 799999764 33333 4788888865
No 242
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=32.93 E-value=14 Score=18.68 Aligned_cols=11 Identities=36% Similarity=0.878 Sum_probs=8.2
Q ss_pred ccccCCC--CCCc
Q psy836 40 AKYTCSF--CGKD 50 (122)
Q Consensus 40 aky~Cp~--Cgk~ 50 (122)
.+|.|++ ||+.
T Consensus 7 k~~~C~~~~C~k~ 19 (37)
T 1va1_A 7 KQHICHIQGCGKV 19 (37)
T ss_dssp CCEECCSTTCCCE
T ss_pred CCCCCCCCCCCCc
Confidence 5688885 8875
No 243
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.74 E-value=14 Score=22.69 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=11.6
Q ss_pred HhhccccCCCCCCceeEe
Q psy836 37 TQHAKYTCSFCGKDSMKR 54 (122)
Q Consensus 37 ~~~aky~Cp~Cgk~~mkR 54 (122)
--..+|.|++||+. +.|
T Consensus 39 c~~~~~~C~~C~~~-~~~ 55 (75)
T 2d9k_A 39 CGARTELCGNCGRN-VLV 55 (75)
T ss_dssp HHHCEEECSSSCCE-EET
T ss_pred cCCCceEcccCCCc-CcH
Confidence 34577888888885 444
No 244
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=32.63 E-value=21 Score=25.79 Aligned_cols=24 Identities=13% Similarity=0.544 Sum_probs=16.5
Q ss_pred ccCCCCCCceeEeEEeeeeeecCcce
Q psy836 42 YTCSFCGKDSMKRSCVGIWSCKRCKR 67 (122)
Q Consensus 42 y~Cp~Cgk~~mkR~avGIW~C~~C~~ 67 (122)
+.||.|+..... .-+.|.|..|..
T Consensus 3 ~~Cp~C~~~~~~--~~~~~~C~~~~~ 26 (269)
T 1p91_A 3 FSCPLCHQPLSR--EKNSYICPQRHQ 26 (269)
T ss_dssp BBCTTTCCBCEE--ETTEEECTTCCE
T ss_pred ccCCCCCcccee--CCCEEECCCCCc
Confidence 689999776422 224699988763
No 245
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.43 E-value=17 Score=21.26 Aligned_cols=13 Identities=38% Similarity=0.966 Sum_probs=10.4
Q ss_pred hccccCCCCCCce
Q psy836 39 HAKYTCSFCGKDS 51 (122)
Q Consensus 39 ~aky~Cp~Cgk~~ 51 (122)
..+|.|+.|++.-
T Consensus 16 ~~~~~C~~C~~~f 28 (77)
T 2cot_A 16 RRRYKCDECGKSF 28 (77)
T ss_dssp SCSSBCSSSCCBC
T ss_pred CCCEECCCCCccc
Confidence 3679999999863
No 246
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=31.91 E-value=30 Score=22.89 Aligned_cols=15 Identities=40% Similarity=0.525 Sum_probs=9.3
Q ss_pred eeeeeeecCcCeEEe
Q psy836 81 CVGIWSCKRCKRIVA 95 (122)
Q Consensus 81 AvtV~s~~rC~~~~A 95 (122)
|.++-.|..|+.+.+
T Consensus 23 A~tvV~C~~Cg~~L~ 37 (66)
T 1qxf_A 23 PSTIVKCIICGRTVA 37 (66)
T ss_dssp CSSCEECSSSCCEEE
T ss_pred CceEEEcccCCCEEe
Confidence 444555777777663
No 247
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=31.84 E-value=19 Score=25.53 Aligned_cols=8 Identities=38% Similarity=1.086 Sum_probs=4.4
Q ss_pred cCCCCCCc
Q psy836 43 TCSFCGKD 50 (122)
Q Consensus 43 ~Cp~Cgk~ 50 (122)
.||.||..
T Consensus 150 ~Cp~CG~~ 157 (165)
T 2lcq_A 150 VCPDCGSK 157 (165)
T ss_dssp BCTTTCCB
T ss_pred cCCCCCCc
Confidence 45555554
No 248
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=31.68 E-value=18 Score=21.81 Aligned_cols=11 Identities=18% Similarity=0.945 Sum_probs=7.5
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.|++.
T Consensus 74 ~~~~C~~C~~~ 84 (100)
T 2ebt_A 74 KPFQCGVCNRS 84 (100)
T ss_dssp CSCBCSSSCCB
T ss_pred CCeECCCCcCc
Confidence 45777777764
No 249
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=30.72 E-value=16 Score=22.04 Aligned_cols=12 Identities=17% Similarity=0.736 Sum_probs=9.1
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.||+.-
T Consensus 2 k~~~C~~C~k~f 13 (88)
T 1llm_C 2 KPFQCRICMRNF 13 (88)
T ss_dssp CCEECTTTCCEE
T ss_pred CCCcCCCCCCcc
Confidence 468899998763
No 250
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=30.61 E-value=15 Score=21.19 Aligned_cols=11 Identities=36% Similarity=0.899 Sum_probs=7.0
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 56 ~~~~C~~C~~~ 66 (82)
T 2kmk_A 56 KPHKCQVCGKA 66 (82)
T ss_dssp CCEECTTTSCE
T ss_pred CCCcCCCcchh
Confidence 45777777654
No 251
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=30.39 E-value=24 Score=22.92 Aligned_cols=29 Identities=10% Similarity=0.184 Sum_probs=17.9
Q ss_pred ccccCCCCCCceeEeEEeeeeeecCccee
Q psy836 40 AKYTCSFCGKDSMKRSCVGIWSCKRCKRI 68 (122)
Q Consensus 40 aky~Cp~Cgk~~mkR~avGIW~C~~C~~~ 68 (122)
.-..||.|+.+-.--..-|.=.|+.|+..
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~ 35 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADRLA 35 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTTEE
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCCCce
Confidence 34579999876432223455678877654
No 252
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=30.24 E-value=27 Score=28.50 Aligned_cols=33 Identities=24% Similarity=0.610 Sum_probs=18.7
Q ss_pred cCCC--CCCceeEeEEeeeeeecCcceeeecceeee
Q psy836 43 TCSF--CGKDSMKRSCVGIWSCKRCKRIVAGGAWDS 76 (122)
Q Consensus 43 ~Cp~--Cgk~~mkR~avGIW~C~~C~~~vAggAy~~ 76 (122)
-||. |+|.-. -..-|.|.|.+|++.+..--|-|
T Consensus 310 aC~~~~C~kkv~-~~~~g~~~C~~C~~~~~~~~~ry 344 (444)
T 4gop_C 310 ACASEGCNKKVN-LDHENNWRCEKCDRSYATPEYRY 344 (444)
T ss_dssp ECCSTTCCCBEE-ECTTSCEEETTTTEEESSCEEEE
T ss_pred cCCcccCCCccc-cCCCccEECCCCCCcCccccEEE
Confidence 4776 766432 23346677777776655444444
No 253
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=30.24 E-value=24 Score=22.81 Aligned_cols=29 Identities=7% Similarity=-0.071 Sum_probs=17.3
Q ss_pred ccccCCCCCCceeEeEEeeeeeecCccee
Q psy836 40 AKYTCSFCGKDSMKRSCVGIWSCKRCKRI 68 (122)
Q Consensus 40 aky~Cp~Cgk~~mkR~avGIW~C~~C~~~ 68 (122)
.-..||.|+.+-.--..-|.=.|+.|+..
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~ 35 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQAKLA 35 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTTTEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcE
Confidence 34579999876432222355577777653
No 254
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=30.21 E-value=30 Score=24.25 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=18.3
Q ss_pred ccccChhhhHhHHHHHHHhhc---cccCCCCCCce
Q psy836 20 GTRYGASLRKMVKKMEITQHA---KYTCSFCGKDS 51 (122)
Q Consensus 20 G~RYG~slRK~v~kie~~~~a---ky~Cp~Cgk~~ 51 (122)
..+|+..++.-..+-.+.+.. ...|..||...
T Consensus 41 Sr~Y~~~~~~is~k~~irlp~~~KR~~Ck~C~s~L 75 (120)
T 1x0t_A 41 AKRYVELALEIQKKAKVKIPRKWKRRYCKRCHTFL 75 (120)
T ss_dssp HHHHHHHHHHHHHHHTCCCCTTTTTSBCTTTCCBC
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHhccCCCCEe
Confidence 346676666655555544332 23588887753
No 255
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=30.10 E-value=24 Score=22.85 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=16.6
Q ss_pred cccCCCCCCceeEeEEeeeeeecCccee
Q psy836 41 KYTCSFCGKDSMKRSCVGIWSCKRCKRI 68 (122)
Q Consensus 41 ky~Cp~Cgk~~mkR~avGIW~C~~C~~~ 68 (122)
-..||.|+.+-.--..-|.=.|+.|+..
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~ 35 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLA 35 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcE
Confidence 4579999876332222355567777653
No 256
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=29.96 E-value=20 Score=23.26 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=14.8
Q ss_pred cCCCCCCceeEeEEeeeeeecCccee
Q psy836 43 TCSFCGKDSMKRSCVGIWSCKRCKRI 68 (122)
Q Consensus 43 ~Cp~Cgk~~mkR~avGIW~C~~C~~~ 68 (122)
-||.|+..-+.....-.=.|+.|+..
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~ 52 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQT 52 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCE
T ss_pred ECcCCCchheecCCCCceEeCCCCCc
Confidence 39988775432222222367777775
No 257
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.76 E-value=20 Score=22.43 Aligned_cols=9 Identities=33% Similarity=1.195 Sum_probs=4.6
Q ss_pred cccCCCCCC
Q psy836 41 KYTCSFCGK 49 (122)
Q Consensus 41 ky~Cp~Cgk 49 (122)
+|.|+.||+
T Consensus 80 ~~~C~~C~k 88 (115)
T 2dmi_A 80 VLKCMYCGH 88 (115)
T ss_dssp SCBCSSSCC
T ss_pred ceECCCCCC
Confidence 455555554
No 258
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=29.75 E-value=30 Score=26.15 Aligned_cols=24 Identities=29% Similarity=0.783 Sum_probs=17.7
Q ss_pred cCCCCCCc-e-eEeEEeeeeeecCcceeee
Q psy836 43 TCSFCGKD-S-MKRSCVGIWSCKRCKRIVA 70 (122)
Q Consensus 43 ~Cp~Cgk~-~-mkR~avGIW~C~~C~~~vA 70 (122)
.|..|++. . ++|. .||..||..+=
T Consensus 166 ~C~~C~~~F~~~~Rr----hHCR~CG~v~C 191 (226)
T 3zyq_A 166 ECHRCRVQFGVMTRK----HHCRACGQIFC 191 (226)
T ss_dssp BCTTTCCBCBTTBCC----EECTTTCCEEC
T ss_pred CCcCcCCCCCccccc----cccCCCcCEeC
Confidence 79999876 2 4443 79999998863
No 259
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=29.74 E-value=26 Score=27.29 Aligned_cols=24 Identities=25% Similarity=0.624 Sum_probs=15.0
Q ss_pred cCCCCCCceeEeE--EeeeeeecCcc
Q psy836 43 TCSFCGKDSMKRS--CVGIWSCKRCK 66 (122)
Q Consensus 43 ~Cp~Cgk~~mkR~--avGIW~C~~C~ 66 (122)
.||.||.+-.+-. .=+.|-|+.|-
T Consensus 236 pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 236 PCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCEeEEEEECCCCeEECCCCC
Confidence 6999998743322 23467777663
No 260
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=29.69 E-value=16 Score=21.60 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=8.6
Q ss_pred hccccCCCCCCc
Q psy836 39 HAKYTCSFCGKD 50 (122)
Q Consensus 39 ~aky~Cp~Cgk~ 50 (122)
-..|.||.||+.
T Consensus 7 ~~~~~C~~C~~~ 18 (39)
T 2i5o_A 7 EDQVPCEKCGSL 18 (39)
T ss_dssp CCEEECTTTCCE
T ss_pred CCCcccccccCc
Confidence 356778888875
No 261
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=29.64 E-value=65 Score=26.01 Aligned_cols=73 Identities=11% Similarity=0.114 Sum_probs=46.1
Q ss_pred hhccccCCCCCCce---eEeEEeeeeeecCcceeeecceeeeeccceeeeeeecC--cCeEEeccccccCchHHHHHHHH
Q psy836 38 QHAKYTCSFCGKDS---MKRSCVGIWSCKRCKRIVAGGAWDSMKRSCVGIWSCKR--CKRIVAGGAWVYNTTAATSVRSA 112 (122)
Q Consensus 38 ~~aky~Cp~Cgk~~---mkR~avGIW~C~~C~~~vAggAy~~~t~~AvtV~s~~r--C~~~~AGGAy~~~T~~~~~~~~~ 112 (122)
....++||.|...- |.=..-|-=-|+.|=..+ ... .+-+.|.- |.+.+.-....|+...+..++..
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~--------~~~-~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNY--------LQG-YTTRDCPQAACSQVVSMRDFVRDPIMELRCKIA 248 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHH--------STT-CSCEECSGGGCSCEECGGGEEECHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHH--------HHh-CCCCCCCcccccCcCchhhCCcCHHHHHHHHHH
Confidence 45678999998763 211011322333332221 111 13478999 99999999999999999988887
Q ss_pred HHHHHHh
Q psy836 113 IRRLREV 119 (122)
Q Consensus 113 i~rl~e~ 119 (122)
-+|.++.
T Consensus 249 k~r~~~~ 255 (267)
T 3htk_C 249 KMKESQE 255 (267)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6665443
No 262
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.29 E-value=24 Score=22.67 Aligned_cols=81 Identities=15% Similarity=0.187 Sum_probs=45.8
Q ss_pred HHHHHHHhhccccCCCCCCceeE--eEEeeeeeecCcceeeecceeeeeccceeeeeeecCcCeEEeccccccCchHHHH
Q psy836 31 VKKMEITQHAKYTCSFCGKDSMK--RSCVGIWSCKRCKRIVAGGAWDSMKRSCVGIWSCKRCKRIVAGGAWVYNTTAATS 108 (122)
Q Consensus 31 v~kie~~~~aky~Cp~Cgk~~mk--R~avGIW~C~~C~~~vAggAy~~~t~~AvtV~s~~rC~~~~AGGAy~~~T~~~~~ 108 (122)
+..........+.||.|-..-.. ...-|-.-|..|-..+... .-+...|.-|...+......++......
T Consensus 11 ~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~Cr~~~~~~~~~~~~~l~~~ 82 (112)
T 1jm7_A 11 VQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQ--------KKGPSQCPLCKNDITKRSLQESTRFSQL 82 (112)
T ss_dssp HHHHHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHS--------SSSSCCCTTTSCCCCTTTCBCCCSSSHH
T ss_pred HHHHHHhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHh--------CCCCCCCcCCCCcCCHhhcCccHHHHHH
Confidence 44444555668899999765311 1222333344443332110 0112469999999888777777776666
Q ss_pred HHHHHHHHHHh
Q psy836 109 VRSAIRRLREV 119 (122)
Q Consensus 109 ~~~~i~rl~e~ 119 (122)
+...++.+.+.
T Consensus 83 ~~~~~~~~~~~ 93 (112)
T 1jm7_A 83 VEELLKIICAF 93 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66655555443
No 263
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=28.91 E-value=18 Score=25.97 Aligned_cols=22 Identities=23% Similarity=0.638 Sum_probs=13.5
Q ss_pred ccccCCCCCCceeEeEEeeeeeec
Q psy836 40 AKYTCSFCGKDSMKRSCVGIWSCK 63 (122)
Q Consensus 40 aky~Cp~Cgk~~mkR~avGIW~C~ 63 (122)
..|+||.||.+. -.|+=|=.|+
T Consensus 70 R~Y~CpiCGATG--d~AHT~kYCP 91 (106)
T 3alr_A 70 RQYKCPLCGATG--AKAHTKRFCP 91 (106)
T ss_dssp GGCCCTTTCCCG--GGCCCGGGCT
T ss_pred ccccCCCCCCcC--CcccceecCC
Confidence 469999999763 2244444444
No 264
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=28.55 E-value=35 Score=24.05 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=17.3
Q ss_pred cccChhhhHhHHHHHHHhhcc---ccCCCCCCce
Q psy836 21 TRYGASLRKMVKKMEITQHAK---YTCSFCGKDS 51 (122)
Q Consensus 21 ~RYG~slRK~v~kie~~~~ak---y~Cp~Cgk~~ 51 (122)
.+|+..++.-..+-.+.+... -.|..|+...
T Consensus 37 r~Y~~~~~~Is~K~~irlp~~~KR~~Ck~C~s~L 70 (123)
T 2k3r_A 37 KRYVELALLVQQKAKVKIPRKWKRRYCKKCHAFL 70 (123)
T ss_dssp HHHHHHHHHHHHHHTCCCSSTTTTSBCTTTCCBC
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHhccCCCCEe
Confidence 456666665555554443322 3577787753
No 265
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=28.51 E-value=23 Score=25.93 Aligned_cols=24 Identities=29% Similarity=0.822 Sum_probs=16.3
Q ss_pred cCCCCCCceeEeEEeeeeeecCccee
Q psy836 43 TCSFCGKDSMKRSCVGIWSCKRCKRI 68 (122)
Q Consensus 43 ~Cp~Cgk~~mkR~avGIW~C~~C~~~ 68 (122)
.|+.||.+-+.+. ..-+|+.|+.+
T Consensus 142 ~~~~~g~~m~~~~--~~~~cp~~g~~ 165 (179)
T 3m7n_A 142 LCSNCKTEMVREG--DILKCPECGRV 165 (179)
T ss_dssp BCTTTCCBCEECS--SSEECSSSCCE
T ss_pred cccccCCceEECC--CEEECCCCCCE
Confidence 4778887665543 67788888754
No 266
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=28.32 E-value=40 Score=24.97 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=20.3
Q ss_pred ccccCCCCCCceeEeEEeeeeeecCcceeeecce
Q psy836 40 AKYTCSFCGKDSMKRSCVGIWSCKRCKRIVAGGA 73 (122)
Q Consensus 40 aky~Cp~Cgk~~mkR~avGIW~C~~C~~~vAggA 73 (122)
++|.|+.|.-.. ..-.|++|..||.--.|+.
T Consensus 82 ~~Y~C~~C~l~d---~~k~~yHC~~CgiCR~G~~ 112 (143)
T 2dkt_A 82 GEYYCSICHLFD---KDKRQYHCESCGICRIGPK 112 (143)
T ss_dssp CSEECSSSCCEE---CSSSEEEETTTTEEEESCG
T ss_pred eeeEeceeeccc---CCCceecCCCCCceeccCC
Confidence 455566664332 3457789988888877763
No 267
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=28.17 E-value=19 Score=21.26 Aligned_cols=12 Identities=25% Similarity=0.897 Sum_probs=9.1
Q ss_pred hccccCCCCCCc
Q psy836 39 HAKYTCSFCGKD 50 (122)
Q Consensus 39 ~aky~Cp~Cgk~ 50 (122)
..+|.|+.||+.
T Consensus 63 ~~~~~C~~C~~~ 74 (89)
T 2wbs_A 63 HRPFQCQKCDRA 74 (89)
T ss_dssp CCCEECSSSSCE
T ss_pred CCCccCCCCCcc
Confidence 356889998875
No 268
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=28.15 E-value=18 Score=23.30 Aligned_cols=11 Identities=27% Similarity=0.730 Sum_probs=6.7
Q ss_pred ccCCCCCCcee
Q psy836 42 YTCSFCGKDSM 52 (122)
Q Consensus 42 y~Cp~Cgk~~m 52 (122)
.+||.||..++
T Consensus 7 r~C~~CgvYTL 17 (60)
T 2apo_B 7 KKCPKCGLYTL 17 (60)
T ss_dssp EECTTTCCEES
T ss_pred eeCCCCCCEec
Confidence 35676666655
No 269
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.11 E-value=19 Score=21.05 Aligned_cols=12 Identities=50% Similarity=0.999 Sum_probs=9.5
Q ss_pred ccccCCCCCCce
Q psy836 40 AKYTCSFCGKDS 51 (122)
Q Consensus 40 aky~Cp~Cgk~~ 51 (122)
.+|.|+.|++.-
T Consensus 46 ~~~~C~~C~~~f 57 (86)
T 1x6h_A 46 AAFVCSKCGKTF 57 (86)
T ss_dssp CCEECSSSCCEE
T ss_pred cceECCCCCChh
Confidence 469999998864
No 270
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=28.07 E-value=12 Score=23.83 Aligned_cols=21 Identities=19% Similarity=0.505 Sum_probs=12.2
Q ss_pred cccCCCCCCceeEeEEeeeeeecCcc
Q psy836 41 KYTCSFCGKDSMKRSCVGIWSCKRCK 66 (122)
Q Consensus 41 ky~Cp~Cgk~~mkR~avGIW~C~~C~ 66 (122)
--.||.||...+.=. -|+.||
T Consensus 30 l~~c~~cGe~~~~H~-----vc~~CG 50 (60)
T 3v2d_5 30 LVPCPECKAMKPPHT-----VCPECG 50 (60)
T ss_dssp CEECTTTCCEECTTS-----CCTTTC
T ss_pred eeECCCCCCeecceE-----EcCCCC
Confidence 345888887654322 266665
No 271
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.91 E-value=16 Score=22.41 Aligned_cols=16 Identities=25% Similarity=0.648 Sum_probs=10.1
Q ss_pred eecCcCeEEecccccc
Q psy836 86 SCKRCKRIVAGGAWVY 101 (122)
Q Consensus 86 s~~rC~~~~AGGAy~~ 101 (122)
.|..|++.+.|+.|..
T Consensus 43 ~C~~C~~~L~~~~~~~ 58 (80)
T 2cuq_A 43 VCTGCQTPLAGQQFTS 58 (80)
T ss_dssp BCSSSCCBCTTCCEEE
T ss_pred CcccCCCcCCCCeeEe
Confidence 3677777776655543
No 272
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=27.87 E-value=20 Score=17.93 Aligned_cols=11 Identities=27% Similarity=0.993 Sum_probs=8.1
Q ss_pred ccccCCC--CCCc
Q psy836 40 AKYTCSF--CGKD 50 (122)
Q Consensus 40 aky~Cp~--Cgk~ 50 (122)
.+|.|++ ||+.
T Consensus 5 k~~~C~~~~C~k~ 17 (38)
T 1bhi_A 5 KPFLCTAPGCGQR 17 (38)
T ss_dssp CCEECCCTTTCCE
T ss_pred cceECCCCCCCcc
Confidence 5688884 8875
No 273
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=27.21 E-value=20 Score=21.19 Aligned_cols=11 Identities=27% Similarity=1.180 Sum_probs=6.9
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.||+.
T Consensus 61 ~~~~C~~C~~~ 71 (90)
T 1a1h_A 61 KPFACDICGRK 71 (90)
T ss_dssp CCEECTTTCCE
T ss_pred CCccCCCCCch
Confidence 45667777654
No 274
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=26.74 E-value=27 Score=27.37 Aligned_cols=27 Identities=26% Similarity=0.657 Sum_probs=16.8
Q ss_pred cccCCCCCCceeEeE--EeeeeeecCcce
Q psy836 41 KYTCSFCGKDSMKRS--CVGIWSCKRCKR 67 (122)
Q Consensus 41 ky~Cp~Cgk~~mkR~--avGIW~C~~C~~ 67 (122)
.-.||.||.+-.+-. .=+.|-|+.|-+
T Consensus 235 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 235 GLPCPACGRPVERRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp TSBCTTTCCBCEEEESSSCEEEECTTTTT
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 356999998743322 235677777754
No 275
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=26.68 E-value=51 Score=25.68 Aligned_cols=25 Identities=20% Similarity=0.701 Sum_probs=16.0
Q ss_pred ccCCCCCCceeEeEE--eeeeeecCcc
Q psy836 42 YTCSFCGKDSMKRSC--VGIWSCKRCK 66 (122)
Q Consensus 42 y~Cp~Cgk~~mkR~a--vGIW~C~~C~ 66 (122)
-.||.||.+-.+-.- =+.|-|+.|-
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 469999987433322 3567777774
No 276
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=26.48 E-value=21 Score=22.85 Aligned_cols=13 Identities=23% Similarity=0.815 Sum_probs=10.3
Q ss_pred hccccCCCCCCce
Q psy836 39 HAKYTCSFCGKDS 51 (122)
Q Consensus 39 ~aky~Cp~Cgk~~ 51 (122)
..+|.|+.||+.-
T Consensus 23 ~kpy~C~~C~k~F 35 (88)
T 1x6f_A 23 NSTYQCKHCDSKL 35 (88)
T ss_dssp CSCEECSSSCCEE
T ss_pred CCCCcCCCCCCEe
Confidence 3579999999864
No 277
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=26.23 E-value=46 Score=20.35 Aligned_cols=11 Identities=27% Similarity=0.818 Sum_probs=6.5
Q ss_pred cccCCCCCCce
Q psy836 41 KYTCSFCGKDS 51 (122)
Q Consensus 41 ky~Cp~Cgk~~ 51 (122)
...|+.|++.-
T Consensus 7 ~~~C~~C~~~I 17 (81)
T 1a7i_A 7 GNKCGACGRTV 17 (81)
T ss_dssp -CBCSSSCCBC
T ss_pred CCcCcCcCccc
Confidence 34677777753
No 278
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=26.22 E-value=25 Score=22.83 Aligned_cols=30 Identities=10% Similarity=0.009 Sum_probs=18.2
Q ss_pred hccccCCCCCCceeEeEEeeeeeecCccee
Q psy836 39 HAKYTCSFCGKDSMKRSCVGIWSCKRCKRI 68 (122)
Q Consensus 39 ~aky~Cp~Cgk~~mkR~avGIW~C~~C~~~ 68 (122)
..-..||.|+.+-.--..-|.=.|+.|+..
T Consensus 6 LeiL~CP~ck~~L~~~~~~~~LiC~~cg~~ 35 (69)
T 2pk7_A 6 LDILACPICKGPLKLSADKTELISKGAGLA 35 (69)
T ss_dssp GGTCCCTTTCCCCEECTTSSEEEETTTTEE
T ss_pred HhheeCCCCCCcCeEeCCCCEEEcCCCCcE
Confidence 345679999876432223355577777653
No 279
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=25.95 E-value=25 Score=19.03 Aligned_cols=8 Identities=50% Similarity=1.140 Sum_probs=6.2
Q ss_pred cCCCCCCc
Q psy836 43 TCSFCGKD 50 (122)
Q Consensus 43 ~Cp~Cgk~ 50 (122)
.||.|++.
T Consensus 5 ~C~~C~k~ 12 (31)
T 1zfo_A 5 NCARCGKI 12 (31)
T ss_dssp BCSSSCSB
T ss_pred cCCccCCE
Confidence 58888877
No 280
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=25.31 E-value=58 Score=25.37 Aligned_cols=26 Identities=31% Similarity=0.644 Sum_probs=16.5
Q ss_pred ccCCCCCCceeEeEE--eeeeeecCcce
Q psy836 42 YTCSFCGKDSMKRSC--VGIWSCKRCKR 67 (122)
Q Consensus 42 y~Cp~Cgk~~mkR~a--vGIW~C~~C~~ 67 (122)
-.||.||.+-.+-.- =+.|-|+.|-+
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTSC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 469999987433322 35677777753
No 281
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=24.81 E-value=34 Score=22.14 Aligned_cols=30 Identities=7% Similarity=-0.105 Sum_probs=19.1
Q ss_pred hccccCCCCCCceeEeEEeeeeeecCccee
Q psy836 39 HAKYTCSFCGKDSMKRSCVGIWSCKRCKRI 68 (122)
Q Consensus 39 ~aky~Cp~Cgk~~mkR~avGIW~C~~C~~~ 68 (122)
..-..||.|+.+-.--...|.=.|+.|+..
T Consensus 8 LeiL~CP~ck~~L~~~~~~g~LvC~~c~~~ 37 (67)
T 2jny_A 8 LEVLACPKDKGPLRYLESEQLLVNERLNLA 37 (67)
T ss_dssp TCCCBCTTTCCBCEEETTTTEEEETTTTEE
T ss_pred HHHhCCCCCCCcCeEeCCCCEEEcCCCCcc
Confidence 345679999876433333455678887653
No 282
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.54 E-value=48 Score=19.62 Aligned_cols=11 Identities=36% Similarity=0.634 Sum_probs=7.7
Q ss_pred ccCCCCCCcee
Q psy836 42 YTCSFCGKDSM 52 (122)
Q Consensus 42 y~Cp~Cgk~~m 52 (122)
-.|+.|++.-.
T Consensus 6 ~~C~~C~~~I~ 16 (72)
T 1x4k_A 6 SGCQECKKTIM 16 (72)
T ss_dssp CCBSSSCCCCC
T ss_pred CCCccCCCccc
Confidence 36888888643
No 283
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.22 E-value=35 Score=20.31 Aligned_cols=10 Identities=40% Similarity=0.889 Sum_probs=6.7
Q ss_pred ccCCCCCCce
Q psy836 42 YTCSFCGKDS 51 (122)
Q Consensus 42 y~Cp~Cgk~~ 51 (122)
-.|+.|++.-
T Consensus 6 ~~C~~C~~~I 15 (72)
T 1x61_A 6 SGCGGCGEDV 15 (72)
T ss_dssp CCCSSSCSCC
T ss_pred CCCccCCCcc
Confidence 4678887753
No 284
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=24.21 E-value=27 Score=21.69 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=7.1
Q ss_pred ccccCCCCCCc
Q psy836 40 AKYTCSFCGKD 50 (122)
Q Consensus 40 aky~Cp~Cgk~ 50 (122)
.+|.|+.|++.
T Consensus 6 ~~~~C~~C~~~ 16 (124)
T 2dlq_A 6 SGVECPTCHKK 16 (124)
T ss_dssp SSCCCTTTCCC
T ss_pred CCCCCCCCCCc
Confidence 45677777764
No 285
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=24.10 E-value=28 Score=21.36 Aligned_cols=13 Identities=23% Similarity=0.876 Sum_probs=9.4
Q ss_pred hccccCCCCCCce
Q psy836 39 HAKYTCSFCGKDS 51 (122)
Q Consensus 39 ~aky~Cp~Cgk~~ 51 (122)
-..+.||.||..+
T Consensus 33 P~dw~CP~Cg~~K 45 (52)
T 1yk4_A 33 PDDWVCPLCGAPK 45 (52)
T ss_dssp CTTCBCTTTCCBG
T ss_pred CCCCcCCCCCCCH
Confidence 4567899998753
No 286
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=23.61 E-value=57 Score=21.49 Aligned_cols=9 Identities=22% Similarity=0.567 Sum_probs=5.1
Q ss_pred cCCCCCCce
Q psy836 43 TCSFCGKDS 51 (122)
Q Consensus 43 ~Cp~Cgk~~ 51 (122)
.|+.|++.-
T Consensus 65 ~C~~C~~~I 73 (126)
T 2xqn_T 65 VCQGCHNAI 73 (126)
T ss_dssp BCTTTCSBC
T ss_pred cCcccCCcC
Confidence 466666653
No 287
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=23.52 E-value=29 Score=21.21 Aligned_cols=8 Identities=50% Similarity=1.364 Sum_probs=4.0
Q ss_pred cccCCCCC
Q psy836 41 KYTCSFCG 48 (122)
Q Consensus 41 ky~Cp~Cg 48 (122)
.|.|+.|+
T Consensus 45 ~~~C~~C~ 52 (106)
T 2ee8_A 45 PYTCDICH 52 (106)
T ss_dssp CCBCSSSC
T ss_pred CcCCCCcc
Confidence 35555554
No 288
>1mz9_A Cartilage oligomeric matrix protein; pentameric coiled-coil domain, protein binding; HET: VDY; 1.70A {Mus musculus} SCOP: h.1.7.1 PDB: 1vdf_A 1fbm_A
Probab=23.01 E-value=37 Score=20.16 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=20.4
Q ss_pred ChhhhHhHHHHHHHhhccccCCCC
Q psy836 24 GASLRKMVKKMEITQHAKYTCSFC 47 (122)
Q Consensus 24 G~slRK~v~kie~~~~aky~Cp~C 47 (122)
+..+|.+|++++..++.-..|..|
T Consensus 22 ~~~~~qqvkE~~~lr~ti~eC~~C 45 (45)
T 1mz9_A 22 RELLRQQVKEITFLKNTVMECDAC 45 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred hhHHHHHHHHHHHHHhhHhhccCC
Confidence 457899999999999988888766
No 289
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=22.79 E-value=59 Score=19.59 Aligned_cols=22 Identities=32% Similarity=0.840 Sum_probs=16.1
Q ss_pred ccCCCCCCceeEeEEeeeeeecCccee
Q psy836 42 YTCSFCGKDSMKRSCVGIWSCKRCKRI 68 (122)
Q Consensus 42 y~Cp~Cgk~~mkR~avGIW~C~~C~~~ 68 (122)
-.|..|++... -| ..|+.|+..
T Consensus 15 t~C~~C~k~i~----~G-~kC~~Ck~~ 36 (49)
T 1kbe_A 15 QVCNVCQKSMI----FG-VKCKHCRLK 36 (49)
T ss_dssp CCCSSSCCSSC----CE-EEETTTTEE
T ss_pred cCccccCceeE----Cc-CCCCCCCCc
Confidence 35999988875 35 688888765
No 290
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=22.76 E-value=29 Score=21.56 Aligned_cols=13 Identities=31% Similarity=0.767 Sum_probs=9.4
Q ss_pred hccccCCCCCCce
Q psy836 39 HAKYTCSFCGKDS 51 (122)
Q Consensus 39 ~aky~Cp~Cgk~~ 51 (122)
-..+.||.||..+
T Consensus 34 P~dw~CP~Cga~K 46 (55)
T 2v3b_B 34 PADWVCPDCGVGK 46 (55)
T ss_dssp CTTCCCTTTCCCG
T ss_pred CCCCcCCCCCCCH
Confidence 3567899998763
No 291
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=22.62 E-value=67 Score=25.64 Aligned_cols=11 Identities=27% Similarity=0.942 Sum_probs=6.6
Q ss_pred cccCCCCCCce
Q psy836 41 KYTCSFCGKDS 51 (122)
Q Consensus 41 ky~Cp~Cgk~~ 51 (122)
.+.||.||...
T Consensus 268 ~~~C~~C~~~~ 278 (309)
T 1pqv_S 268 RFTCGKCKEKK 278 (309)
T ss_pred cccCCCCCCCe
Confidence 45666666554
No 292
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.59 E-value=57 Score=21.27 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=8.5
Q ss_pred eeeeeeecCcCeEEe
Q psy836 81 CVGIWSCKRCKRIVA 95 (122)
Q Consensus 81 AvtV~s~~rC~~~~A 95 (122)
|.++-.|..|+.+.+
T Consensus 31 a~t~V~C~~Cgt~L~ 45 (63)
T 3j20_W 31 PATKVRCLICGATLV 45 (63)
T ss_dssp CSSCEECSSSCCEEE
T ss_pred CCeEEEccCcCCEEe
Confidence 334444777776654
No 293
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.58 E-value=27 Score=21.57 Aligned_cols=8 Identities=50% Similarity=1.506 Sum_probs=3.8
Q ss_pred cccCCCCC
Q psy836 41 KYTCSFCG 48 (122)
Q Consensus 41 ky~Cp~Cg 48 (122)
+|.|++|+
T Consensus 37 ~~~C~~C~ 44 (110)
T 2csh_A 37 PYGCGVCG 44 (110)
T ss_dssp SEECTTTS
T ss_pred CccCCCCC
Confidence 34455543
No 294
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=22.57 E-value=32 Score=24.05 Aligned_cols=23 Identities=39% Similarity=0.921 Sum_probs=17.1
Q ss_pred cCCCCCCc-e-eEeEEeeeeeecCcceee
Q psy836 43 TCSFCGKD-S-MKRSCVGIWSCKRCKRIV 69 (122)
Q Consensus 43 ~Cp~Cgk~-~-mkR~avGIW~C~~C~~~v 69 (122)
.|+.|++. . ++|. .||..||..|
T Consensus 71 ~C~~C~~~Fs~~~Rr----HHCR~CG~vf 95 (125)
T 1joc_A 71 NCMACGKGFSVTVRR----HHCRQCGNIF 95 (125)
T ss_dssp BCTTTCCBCCSSSCC----EECTTTCCEE
T ss_pred CCcCcCCcccccccc----ccCCCCCeEE
Confidence 69999986 2 3333 6999999986
No 295
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=22.08 E-value=21 Score=21.37 Aligned_cols=13 Identities=31% Similarity=1.020 Sum_probs=9.4
Q ss_pred Eeeeeeec--Cccee
Q psy836 56 CVGIWSCK--RCKRI 68 (122)
Q Consensus 56 avGIW~C~--~C~~~ 68 (122)
..|.|.|+ .|+..
T Consensus 11 ~~GDW~C~~~~C~~~ 25 (45)
T 1n0z_A 11 SDGDWICPDKKCGNV 25 (45)
T ss_dssp CSSSCBCSSTTTCCB
T ss_pred CCCCcCCCCCCCCCE
Confidence 45788888 77764
No 296
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.75 E-value=44 Score=20.05 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=7.8
Q ss_pred cccCCCCCCce
Q psy836 41 KYTCSFCGKDS 51 (122)
Q Consensus 41 ky~Cp~Cgk~~ 51 (122)
.-.|+.|++.-
T Consensus 11 ~~~C~~C~~~I 21 (77)
T 1g47_A 11 SATCERCKGGF 21 (77)
T ss_dssp CCBCSSSCCBC
T ss_pred CCCchhcCCcc
Confidence 45688888764
No 297
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=21.75 E-value=79 Score=18.90 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=37.2
Q ss_pred hccccCCCCCCceeE--eEEeeeeeecCcceeeecceeeeeccceeeeeeecCcCeEEeccccccCchHHHHHHHHHHHH
Q psy836 39 HAKYTCSFCGKDSMK--RSCVGIWSCKRCKRIVAGGAWDSMKRSCVGIWSCKRCKRIVAGGAWVYNTTAATSVRSAIRRL 116 (122)
Q Consensus 39 ~aky~Cp~Cgk~~mk--R~avGIW~C~~C~~~vAggAy~~~t~~AvtV~s~~rC~~~~AGGAy~~~T~~~~~~~~~i~rl 116 (122)
...+.||.|...-.. ...-|---|..|-..+... +-..|.-|+..+.-....++.. +++.|..+
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~----------~~~~CP~C~~~~~~~~l~~n~~----l~~~i~~~ 71 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA----------GHKTCPKSQETLLHAGLTPNYV----LKSLIALW 71 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT----------TCCBCTTTCCBCSSCCCEECTT----THHHHHHH
T ss_pred cccCCCCCccccccCCEEcCCCCeecHHHHHHHHHH----------CcCCCCCCcCCCChhhCccCHH----HHHHHHHH
Confidence 467899999765321 1223444444443332210 1345999998887665555544 45555555
Q ss_pred HHhh
Q psy836 117 REVN 120 (122)
Q Consensus 117 ~e~~ 120 (122)
++.+
T Consensus 72 ~~~~ 75 (78)
T 1t1h_A 72 CESN 75 (78)
T ss_dssp HHHS
T ss_pred HHHc
Confidence 5543
No 298
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=21.65 E-value=34 Score=21.38 Aligned_cols=13 Identities=23% Similarity=0.864 Sum_probs=9.1
Q ss_pred hccccCCCCCCce
Q psy836 39 HAKYTCSFCGKDS 51 (122)
Q Consensus 39 ~aky~Cp~Cgk~~ 51 (122)
-..+.||.||..+
T Consensus 34 P~dw~CP~Cg~~K 46 (54)
T 4rxn_A 34 PDDWVCPLCGVGK 46 (54)
T ss_dssp CTTCBCTTTCCBG
T ss_pred CCCCcCcCCCCcH
Confidence 3567888888653
No 299
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=21.46 E-value=27 Score=21.71 Aligned_cols=10 Identities=30% Similarity=1.258 Sum_probs=7.1
Q ss_pred eeeeecCcce
Q psy836 58 GIWSCKRCKR 67 (122)
Q Consensus 58 GIW~C~~C~~ 67 (122)
..|+|.+|++
T Consensus 12 D~WkC~~C~~ 21 (46)
T 2c6a_A 12 DYWKCTSCNE 21 (46)
T ss_dssp GCEECTTTCC
T ss_pred ceEecccccc
Confidence 4577777775
No 300
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=21.24 E-value=20 Score=28.44 Aligned_cols=24 Identities=42% Similarity=0.819 Sum_probs=0.0
Q ss_pred ccCCCCCCc-e-eEeEEeeeeeecCcceee
Q psy836 42 YTCSFCGKD-S-MKRSCVGIWSCKRCKRIV 69 (122)
Q Consensus 42 y~Cp~Cgk~-~-mkR~avGIW~C~~C~~~v 69 (122)
-.|+.|++. . +.| ..+|..||..+
T Consensus 376 ~~c~~c~~~f~~~~r----~h~Cr~Cg~~~ 401 (434)
T 3mpx_A 376 MMCMNCGCDFSLTLR----RHHCHACGKIV 401 (434)
T ss_dssp ------------------------------
T ss_pred CcCCCcCCCCCCcch----hhhcccCcCEe
Confidence 469999876 2 333 37899998865
No 301
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=20.69 E-value=13 Score=25.04 Aligned_cols=14 Identities=14% Similarity=0.738 Sum_probs=10.0
Q ss_pred HHhhccccCCCCCC
Q psy836 36 ITQHAKYTCSFCGK 49 (122)
Q Consensus 36 ~~~~aky~Cp~Cgk 49 (122)
+.-...|.||+|.+
T Consensus 25 vvEf~dy~Cp~C~~ 38 (184)
T 4dvc_A 25 VSEFFSFYCPHCNT 38 (184)
T ss_dssp EEEEECTTCHHHHH
T ss_pred EEEEECCCCHhHHH
Confidence 33456899999965
No 302
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=20.59 E-value=34 Score=23.12 Aligned_cols=10 Identities=30% Similarity=1.029 Sum_probs=5.2
Q ss_pred cccCCCCCCc
Q psy836 41 KYTCSFCGKD 50 (122)
Q Consensus 41 ky~Cp~Cgk~ 50 (122)
.+.||.||..
T Consensus 60 dW~CPvCga~ 69 (81)
T 2kn9_A 60 DWSCPDCGAA 69 (81)
T ss_dssp TCCCTTTCCC
T ss_pred CCcCCCCCCC
Confidence 4455555543
No 303
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=20.35 E-value=40 Score=21.70 Aligned_cols=26 Identities=31% Similarity=0.781 Sum_probs=18.1
Q ss_pred ccCCCCCCc-e-eEeEEeeeeeecCcceeeec
Q psy836 42 YTCSFCGKD-S-MKRSCVGIWSCKRCKRIVAG 71 (122)
Q Consensus 42 y~Cp~Cgk~-~-mkR~avGIW~C~~C~~~vAg 71 (122)
-.|..|++. . ++|. .||..||..+=+
T Consensus 20 ~~C~~C~~~Fs~~~Rr----HHCR~CG~v~C~ 47 (82)
T 2yw8_A 20 THCRQCEKEFSISRRK----HHCRNCGHIFCN 47 (82)
T ss_dssp CBCTTTCCBCBTTBCC----EECTTTCCEECS
T ss_pred CcccCcCCcccCcccc----ccCCCCCCEECh
Confidence 369999887 2 3333 589999987633
No 304
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=20.33 E-value=41 Score=21.20 Aligned_cols=26 Identities=27% Similarity=0.744 Sum_probs=18.3
Q ss_pred ccCCCCCCc-e-eEeEEeeeeeecCcceeeec
Q psy836 42 YTCSFCGKD-S-MKRSCVGIWSCKRCKRIVAG 71 (122)
Q Consensus 42 y~Cp~Cgk~-~-mkR~avGIW~C~~C~~~vAg 71 (122)
..|..|++. . ++| ..||..||..+=+
T Consensus 12 ~~C~~C~~~F~~~~R----rHHCR~CG~v~C~ 39 (73)
T 1vfy_A 12 DACMICSKKFSLLNR----KHHCRSCGGVFCQ 39 (73)
T ss_dssp SBCTTTCCBCBTTBC----CEECTTTCCEECG
T ss_pred CcccCCCCccCCccc----cccCCCCCEEEcc
Confidence 369999886 2 333 3699999987643
No 305
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=20.16 E-value=36 Score=22.15 Aligned_cols=13 Identities=15% Similarity=0.608 Sum_probs=9.2
Q ss_pred hccccCCCCCCce
Q psy836 39 HAKYTCSFCGKDS 51 (122)
Q Consensus 39 ~aky~Cp~Cgk~~ 51 (122)
-..+.||.||..+
T Consensus 38 Pddw~CP~Cga~K 50 (70)
T 1dx8_A 38 SDSFMCPACRSPK 50 (70)
T ss_dssp CTTCBCTTTCCBG
T ss_pred CCCCcCCCCCCCH
Confidence 3567899998763
No 306
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.15 E-value=46 Score=20.11 Aligned_cols=10 Identities=30% Similarity=0.687 Sum_probs=6.6
Q ss_pred ccCCCCCCce
Q psy836 42 YTCSFCGKDS 51 (122)
Q Consensus 42 y~Cp~Cgk~~ 51 (122)
-.|+.|++..
T Consensus 10 ~~C~~C~~~I 19 (76)
T 2cu8_A 10 SKCPKCDKTV 19 (76)
T ss_dssp CBCTTTCCBC
T ss_pred CCCcCCCCEe
Confidence 4577777753
No 307
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=20.02 E-value=69 Score=18.61 Aligned_cols=10 Identities=30% Similarity=0.514 Sum_probs=7.4
Q ss_pred ccCCCCCCce
Q psy836 42 YTCSFCGKDS 51 (122)
Q Consensus 42 y~Cp~Cgk~~ 51 (122)
-.|+.|++..
T Consensus 12 ~~C~~C~~~i 21 (72)
T 3f6q_B 12 ATCERCKGGF 21 (72)
T ss_dssp CBCTTTCCBC
T ss_pred ccchhcCccc
Confidence 4688888864
Done!