RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy836
         (122 letters)



>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 73

 Score = 95.5 bits (238), Expect = 5e-28
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 16 TGKYGTRYGASLRKMVKKMEITQHAKYTCSFCGKDSMKRSCVGIWSCKRCKRIVAGGAW 74
          +G++G RYG   R+ V ++E   +  + C  CG+D + R   GIW C  C     GG++
Sbjct: 2  SGRFGARYGRVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSY 60


>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula
           marismortui [TaxId: 2238]}
          Length = 73

 Score = 94.3 bits (235), Expect = 2e-27
 Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 25/97 (25%)

Query: 16  TGKYGTRYGASLRKMVKKMEITQHAKYTCSFCGKDSMKRSCVGIWSCKRCKRIVAGGAWD 75
           TG++G RYG  +R  V  +EI    K+ C  CG                           
Sbjct: 2   TGRFGPRYGLKIRVRVADVEIKHKKKHKCPVCGF-------------------------K 36

Query: 76  SMKRSCVGIWSCKRCKRIVAGGAWVYNTTAATSVRSA 112
            +KR+  GIW C  C   +AGG +   T A  +V  A
Sbjct: 37  KLKRAGTGIWMCGHCGYKIAGGCYQPETVAGKAVMKA 73


>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein
          3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 69

 Score = 27.4 bits (60), Expect = 0.15
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 28 RKMVKKMEITQHAKYTCSFCGKDSMKRSCVGIWSCKRCKR 67
          ++M  +    QH  + C  CG + ++      W C+ C  
Sbjct: 1  QQMQAESGFVQHVGFKCDNCGIEPIQGVR---WHCQDCPP 37


>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
           8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 348

 Score = 26.2 bits (56), Expect = 1.1
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 6/67 (8%)

Query: 26  SLRKMVKKMEITQHAKYTCSFCGKDSMKRSCVGIWSCKRCKRIVAGGAWDSMKRSCVGIW 85
            LR   K+ ++T + ++ CS C         + IW       +         + S  G W
Sbjct: 206 CLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLV------HLKRFSYDGRW 259

Query: 86  SCKRCKR 92
             K    
Sbjct: 260 KQKLQTS 266


>d1z70x1 d.169.1.7 (X:1086-1371) Sulfatase modifying factor 1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 286

 Score = 25.1 bits (53), Expect = 2.8
 Identities = 8/58 (13%), Positives = 17/58 (29%)

Query: 58  GIWSCKRCKRIVAGGAWDSMKRSCVGIWSCKRCKRIVAGGAWVYNTTAATSVRSAIRR 115
            I                S++ +           R+  GG+++ + +     R A R 
Sbjct: 208 NIVGNAWEWTSDWWTVHHSVEETLNPKGPPSGKDRVKKGGSYMCHRSYCYRYRCAARS 265


>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 381

 Score = 24.2 bits (52), Expect = 5.9
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 88  KRCKRIVAGGAWVYNTTAATSVRSAIRRLRE 118
           K  +     G WV    A +  R+ + +L E
Sbjct: 124 KNGQLEFVTGGWVMPDEANSHWRNVLLQLTE 154


>d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 150

 Score = 23.3 bits (50), Expect = 9.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 56 CVGIWSCKRCKRI 68
          C+G + C+RC R+
Sbjct: 10 CLGEFLCRRCYRL 22



 Score = 23.3 bits (50), Expect = 9.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 81 CVGIWSCKRCKRI 93
          C+G + C+RC R+
Sbjct: 10 CLGEFLCRRCYRL 22


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.132    0.430 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 479,356
Number of extensions: 21456
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 40
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.3 bits)