BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8360
(152 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|350536293|ref|NP_001233048.1| uncharacterized protein LOC100165288 [Acyrthosiphon pisum]
gi|239788305|dbj|BAH70841.1| ACYPI005782 [Acyrthosiphon pisum]
gi|239790530|dbj|BAH71820.1| ACYPI006245 [Acyrthosiphon pisum]
Length = 132
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/88 (76%), Positives = 80/88 (90%), Gaps = 1/88 (1%)
Query: 66 KSKNQIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKAR 124
++++Q++ + ++ K + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK R
Sbjct: 45 EAQSQVQKSKRITTKYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKKR 104
Query: 125 KIPIIIRRYLPDNSYEDWGIDELKIIDR 152
KIPIIIRRYLPDNSYEDWGIDEL I+D+
Sbjct: 105 KIPIIIRRYLPDNSYEDWGIDELIIVDQ 132
>gi|307168238|gb|EFN61464.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Camponotus floridanus]
Length = 129
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/70 (94%), Positives = 67/70 (95%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPIIIRRYLPDNSYEDW
Sbjct: 60 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIIIRRYLPDNSYEDW 119
Query: 143 GIDELKIIDR 152
GIDEL IID
Sbjct: 120 GIDELIIIDH 129
>gi|66524012|ref|XP_393973.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Apis mellifera]
gi|340724588|ref|XP_003400663.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Bombus terrestris]
gi|350397886|ref|XP_003485021.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Bombus impatiens]
gi|380021021|ref|XP_003694373.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Apis florea]
Length = 130
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/70 (94%), Positives = 67/70 (95%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPIIIRRYLPDNSYEDW
Sbjct: 61 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIIIRRYLPDNSYEDW 120
Query: 143 GIDELKIIDR 152
GIDEL IID
Sbjct: 121 GIDELIIIDH 130
>gi|332027163|gb|EGI67256.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Acromyrmex echinatior]
Length = 130
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/70 (94%), Positives = 67/70 (95%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPIIIRRYLPDNSYEDW
Sbjct: 61 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIIIRRYLPDNSYEDW 120
Query: 143 GIDELKIIDR 152
GIDEL IID
Sbjct: 121 GIDELIIIDH 130
>gi|307201767|gb|EFN81440.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Harpegnathos saltator]
gi|307202651|gb|EFN81971.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Harpegnathos saltator]
Length = 130
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/70 (92%), Positives = 67/70 (95%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPI+IRRYLPDNSYEDW
Sbjct: 61 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIVIRRYLPDNSYEDW 120
Query: 143 GIDELKIIDR 152
GIDEL IID
Sbjct: 121 GIDELIIIDH 130
>gi|322784320|gb|EFZ11308.1| hypothetical protein SINV_10192 [Solenopsis invicta]
Length = 149
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/71 (94%), Positives = 67/71 (94%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
I YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPIIIRRYLPDNSYED
Sbjct: 79 ILYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIIIRRYLPDNSYED 138
Query: 142 WGIDELKIIDR 152
WGIDEL IID
Sbjct: 139 WGIDELIIIDH 149
>gi|383854730|ref|XP_003702873.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Megachile rotundata]
Length = 130
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/70 (92%), Positives = 67/70 (95%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPI+IRRYLPDNSYEDW
Sbjct: 61 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIVIRRYLPDNSYEDW 120
Query: 143 GIDELKIIDR 152
GIDEL IID
Sbjct: 121 GIDELIIIDH 130
>gi|307197591|gb|EFN78795.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Harpegnathos saltator]
Length = 109
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/69 (94%), Positives = 67/69 (97%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPI+IRRYLPDNSYEDW
Sbjct: 40 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIVIRRYLPDNSYEDW 99
Query: 143 GIDELKIID 151
GIDEL IID
Sbjct: 100 GIDELIIID 108
>gi|241558215|ref|XP_002400181.1| RNA polymerase subunit K, putative [Ixodes scapularis]
gi|215499742|gb|EEC09236.1| RNA polymerase subunit K, putative [Ixodes scapularis]
gi|442752305|gb|JAA68312.1| Putative rna polymerase subunit k [Ixodes ricinus]
Length = 129
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/87 (79%), Positives = 72/87 (82%), Gaps = 2/87 (2%)
Query: 67 SKNQIKNNNK--LNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKAR 124
S Q + N K + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKAR
Sbjct: 43 SDGQPQQNQKRITTMYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKAR 102
Query: 125 KIPIIIRRYLPDNSYEDWGIDELKIID 151
KIPIIIRRYLPD SYEDWGIDEL I D
Sbjct: 103 KIPIIIRRYLPDGSYEDWGIDELIITD 129
>gi|242007913|ref|XP_002424760.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative [Pediculus humanus corporis]
gi|212508274|gb|EEB12022.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative [Pediculus humanus corporis]
Length = 132
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 77/91 (84%), Gaps = 1/91 (1%)
Query: 63 MKVKSKNQIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKEL 121
+ +++K + + ++ K + +YERARVLGTRALQIAM APVMVELEGETDPLQIAMKEL
Sbjct: 42 ISIEAKGSVAKSKRITTKYMTKYERARVLGTRALQIAMGAPVMVELEGETDPLQIAMKEL 101
Query: 122 KARKIPIIIRRYLPDNSYEDWGIDELKIIDR 152
K RKIPIIIRRYLPD+SYEDWGIDEL IID
Sbjct: 102 KQRKIPIIIRRYLPDHSYEDWGIDELIIIDH 132
>gi|346470037|gb|AEO34863.1| hypothetical protein [Amblyomma maculatum]
Length = 129
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/69 (94%), Positives = 66/69 (95%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 61 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDGSYEDW 120
Query: 143 GIDELKIID 151
GIDEL I D
Sbjct: 121 GIDELLITD 129
>gi|91084023|ref|XP_975355.1| PREDICTED: similar to AGAP005873-PA [Tribolium castaneum]
gi|270006702|gb|EFA03150.1| hypothetical protein TcasGA2_TC013063 [Tribolium castaneum]
Length = 131
Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 75/88 (85%), Gaps = 1/88 (1%)
Query: 66 KSKNQIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKAR 124
++ + N ++ K + +YERARVLGTRALQIAMCAPVMVEL+GETDPLQIAMKELK R
Sbjct: 44 QAGGGVPKNKRITTKYMTKYERARVLGTRALQIAMCAPVMVELDGETDPLQIAMKELKQR 103
Query: 125 KIPIIIRRYLPDNSYEDWGIDELKIIDR 152
KIPIIIRRYLPD+SYEDWGIDEL IID
Sbjct: 104 KIPIIIRRYLPDHSYEDWGIDELIIIDH 131
>gi|290561697|gb|ADD38248.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Lepeophtheirus salmonis]
Length = 135
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/69 (94%), Positives = 66/69 (95%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPIIIRRYLPD SYEDW
Sbjct: 66 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIIIRRYLPDGSYEDW 125
Query: 143 GIDELKIID 151
GIDEL IID
Sbjct: 126 GIDELIIID 134
>gi|332373212|gb|AEE61747.1| unknown [Dendroctonus ponderosae]
Length = 131
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 73/83 (87%), Gaps = 1/83 (1%)
Query: 71 IKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPII 129
+ N ++ K + +YERARVLGTRALQIAMCAPVMVEL+GETDPLQIAMKELK RKIPII
Sbjct: 49 VPKNKRITTKYMTKYERARVLGTRALQIAMCAPVMVELDGETDPLQIAMKELKQRKIPII 108
Query: 130 IRRYLPDNSYEDWGIDELKIIDR 152
IRRYLPD+SYEDWGIDEL IID
Sbjct: 109 IRRYLPDHSYEDWGIDELIIIDH 131
>gi|156547958|ref|XP_001604960.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Nasonia vitripennis]
Length = 130
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/70 (88%), Positives = 67/70 (95%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+MCAPVMVELEGETDPLQIAMKELK RKIPIIIRR+LPD+SYEDW
Sbjct: 61 KYERARILGTRALQISMCAPVMVELEGETDPLQIAMKELKQRKIPIIIRRFLPDHSYEDW 120
Query: 143 GIDELKIIDR 152
GIDEL IID
Sbjct: 121 GIDELIIIDH 130
>gi|357620847|gb|EHJ72887.1| DNA-directed RNA polymerase subunit 6-like protein [Danaus
plexippus]
Length = 132
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/70 (91%), Positives = 66/70 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPIIIRRYLPD+SYEDW
Sbjct: 63 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIIIRRYLPDHSYEDW 122
Query: 143 GIDELKIIDR 152
IDEL IID
Sbjct: 123 SIDELIIIDH 132
>gi|432111961|gb|ELK34996.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Myotis
davidii]
Length = 165
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 97 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 156
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 157 GVDELIITD 165
>gi|58387910|ref|XP_315900.2| AGAP005873-PA [Anopheles gambiae str. PEST]
gi|55238688|gb|EAA11626.2| AGAP005873-PA [Anopheles gambiae str. PEST]
Length = 131
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 72/83 (86%), Gaps = 1/83 (1%)
Query: 71 IKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPII 129
+ N ++ K + +YERARVLGTRALQIAMCAP+MVELEGETDPLQIAMKELK RKIPII
Sbjct: 49 VPKNKRITTKYMTKYERARVLGTRALQIAMCAPIMVELEGETDPLQIAMKELKQRKIPII 108
Query: 130 IRRYLPDNSYEDWGIDELKIIDR 152
IRRYLPD+SYEDW IDEL IID
Sbjct: 109 IRRYLPDSSYEDWSIDELIIIDH 131
>gi|432871046|ref|XP_004071844.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Oryzias latipes]
Length = 127
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK+RKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G DEL I D
Sbjct: 119 GCDELIITD 127
>gi|281351145|gb|EFB26729.1| hypothetical protein PANDA_002504 [Ailuropoda melanoleuca]
Length = 132
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 64 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 123
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 124 GVDELIITD 132
>gi|50540154|ref|NP_001002544.1| polymerase (RNA) II (DNA directed) polypeptide F [Danio rerio]
gi|49900746|gb|AAH76264.1| Zgc:92790 [Danio rerio]
Length = 127
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK+RKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G DEL I D
Sbjct: 119 GCDELIITD 127
>gi|55742300|ref|NP_001006888.1| polymerase (RNA) II (DNA directed) polypeptide F [Xenopus
(Silurana) tropicalis]
gi|50416676|gb|AAH77687.1| polymerase (RNA) II (DNA directed) polypeptide F [Xenopus
(Silurana) tropicalis]
gi|89267399|emb|CAJ83270.1| polymerase (RNA) II (DNA directed) polypeptide F [Xenopus
(Silurana) tropicalis]
Length = 127
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 119 GVDELIITD 127
>gi|47217008|emb|CAG01636.1| unnamed protein product [Tetraodon nigroviridis]
Length = 127
Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK+RKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G DEL I D
Sbjct: 119 GCDELIITD 127
>gi|197128486|gb|ACH44984.1| putative DNA directed RNA polymerase II polypeptide F variant 2
[Taeniopygia guttata]
Length = 127
Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 119 GVDELIITD 127
>gi|348511249|ref|XP_003443157.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Oreochromis niloticus]
Length = 127
Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK+RKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G DEL I D
Sbjct: 119 GCDELIITD 127
>gi|147900131|ref|NP_001088632.1| DNA directed RNA polymerase II polypeptide F [Xenopus laevis]
gi|55250665|gb|AAH86273.1| LOC495684 protein [Xenopus laevis]
gi|226372762|gb|ACO52006.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Rana
catesbeiana]
Length = 127
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 119 GVDELIITD 127
>gi|149463071|ref|XP_001514439.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Ornithorhynchus anatinus]
gi|327284940|ref|XP_003227193.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Anolis carolinensis]
Length = 127
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 119 GVDELIITD 127
>gi|440896219|gb|ELR48207.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Bos
grunniens mutus]
Length = 105
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 37 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 96
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 97 GVDELIITD 105
>gi|443707894|gb|ELU03278.1| hypothetical protein CAPTEDRAFT_181288 [Capitella teleta]
Length = 77
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 64/69 (92%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGE DPLQIAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 8 KYERARVLGTRALQIAMCAPVMVELEGEKDPLQIAMKELKARKIPIIIRRYLPDGSYEDW 67
Query: 143 GIDELKIID 151
GIDEL I D
Sbjct: 68 GIDELIISD 76
>gi|45382031|ref|NP_990065.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Gallus
gallus]
gi|326911899|ref|XP_003202293.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Meleagris gallopavo]
gi|6522686|emb|CAB62065.1| RNA polymerase common subunit RPB6 [Gallus gallus]
Length = 127
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 119 GVDELIITD 127
>gi|170068328|ref|XP_001868823.1| DNA-directed RNA polymeraseI [Culex quinquefasciatus]
gi|167864391|gb|EDS27774.1| DNA-directed RNA polymeraseI [Culex quinquefasciatus]
Length = 131
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 63/70 (90%), Positives = 65/70 (92%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAP+MVELEGETDPLQIAMKELK RKIPIIIRRYLPD SYEDW
Sbjct: 62 KYERARVLGTRALQIAMCAPIMVELEGETDPLQIAMKELKQRKIPIIIRRYLPDASYEDW 121
Query: 143 GIDELKIIDR 152
IDEL IID
Sbjct: 122 SIDELIIIDH 131
>gi|157137087|ref|XP_001663881.1| DNA-directed RNA polymerase subunit rpb6 [Aedes aegypti]
gi|108880924|gb|EAT45149.1| AAEL003552-PA [Aedes aegypti]
Length = 131
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 62/70 (88%), Positives = 66/70 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAP+MVELEGETDPLQIAMKELK RKIPIIIRR+LPD+SYEDW
Sbjct: 62 KYERARVLGTRALQIAMCAPIMVELEGETDPLQIAMKELKQRKIPIIIRRFLPDSSYEDW 121
Query: 143 GIDELKIIDR 152
IDEL IID
Sbjct: 122 SIDELIIIDH 131
>gi|229366558|gb|ACQ58259.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Anoplopoma fimbria]
Length = 127
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK+RKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G DEL I D
Sbjct: 119 GCDELIITD 127
>gi|126343910|ref|XP_001365095.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Monodelphis domestica]
gi|395540892|ref|XP_003772384.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Sarcophilus harrisii]
Length = 127
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 119 GVDELIITD 127
>gi|344238230|gb|EGV94333.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Cricetulus griseus]
Length = 121
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 53 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 112
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 113 GVDELIITD 121
>gi|215259697|gb|ACJ64340.1| DNA-directed RNA polymerase I [Culex tarsalis]
Length = 131
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 63/70 (90%), Positives = 65/70 (92%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAP+MVELEGETDPLQIAMKELK RKIPIIIRRYLPD SYEDW
Sbjct: 62 KYERARVLGTRALQIAMCAPIMVELEGETDPLQIAMKELKQRKIPIIIRRYLPDASYEDW 121
Query: 143 GIDELKIIDR 152
IDEL IID
Sbjct: 122 SIDELIIIDH 131
>gi|189053151|dbj|BAG34773.1| unnamed protein product [Homo sapiens]
Length = 127
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 119 GVDELIITD 127
>gi|57092769|ref|XP_531740.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 isoform 1 [Canis lupus familiaris]
gi|301757504|ref|XP_002914588.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Ailuropoda melanoleuca]
gi|410965535|ref|XP_003989303.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Felis catus]
Length = 127
Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 119 GVDELIITD 127
>gi|122142944|sp|Q32PE0.1|RPAB2_BOVIN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerase II
subunit F; AltName: Full=RPB6 homolog
gi|79160245|gb|AAI08154.1| Polymerase (RNA) II (DNA directed) polypeptide F [Bos taurus]
Length = 127
Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 119 GVDELIITD 127
>gi|149743032|ref|XP_001501309.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Equus caballus]
Length = 127
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 119 GVDELIITD 127
>gi|402884196|ref|XP_003905574.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Papio anubis]
Length = 127
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 119 GVDELIITD 127
>gi|11527390|ref|NP_068809.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Homo
sapiens]
gi|197099562|ref|NP_001127626.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Pongo
abelii]
gi|269315856|ref|NP_001032552.2| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Bos
taurus]
gi|388452428|ref|NP_001252903.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Macaca
mulatta]
gi|55661193|ref|XP_515126.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 isoform 2 [Pan troglodytes]
gi|291414667|ref|XP_002723577.1| PREDICTED: DNA directed RNA polymerase II polypeptide F-like
[Oryctolagus cuniculus]
gi|296191869|ref|XP_002743812.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Callithrix jacchus]
gi|332231190|ref|XP_003264781.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 isoform 1 [Nomascus leucogenys]
gi|344296242|ref|XP_003419818.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Loxodonta africana]
gi|348569492|ref|XP_003470532.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Cavia porcellus]
gi|354496424|ref|XP_003510326.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Cricetulus griseus]
gi|395819802|ref|XP_003783268.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Otolemur garnettii]
gi|397501922|ref|XP_003821623.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Pan paniscus]
gi|403283017|ref|XP_003932925.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Saimiri boliviensis boliviensis]
gi|426225768|ref|XP_004007035.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Ovis aries]
gi|47117760|sp|P61217.1|RPAB2_CRIGR RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerase II
subunit F; AltName: Full=RPB6 homolog
gi|47117761|sp|P61218.1|RPAB2_HUMAN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerase II
subunit F; AltName: Full=DNA-directed RNA polymerases I,
II, and III 14.4 kDa polypeptide; AltName:
Full=RPABC14.4; Short=RPB14.4; AltName: Full=RPB6
homolog; AltName: Full=RPC15
gi|75054738|sp|Q5R592.1|RPAB2_PONAB RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerase II
subunit F; AltName: Full=RPB6 homolog
gi|157879780|pdb|1QKL|A Chain A, Hrpabc14.4, Essential Subunit Of Human Rna Polymerases I,
Ii And Iii
gi|415388|emb|CAA81629.1| RNA Polymerase II subunit 14.4 kD [Homo sapiens]
gi|546863|gb|AAB30834.1| RNA polymerase common subunit RPB6 [Cricetinae]
gi|13097771|gb|AAH03582.1| Polymerase (RNA) II (DNA directed) polypeptide F [Homo sapiens]
gi|47678623|emb|CAG30432.1| POLR2F [Homo sapiens]
gi|48146159|emb|CAG33302.1| POLR2F [Homo sapiens]
gi|55732753|emb|CAH93074.1| hypothetical protein [Pongo abelii]
gi|109451432|emb|CAK54577.1| POLR2F [synthetic construct]
gi|109452028|emb|CAK54876.1| POLR2F [synthetic construct]
gi|119580607|gb|EAW60203.1| polymerase (RNA) II (DNA directed) polypeptide F, isoform CRA_b
[Homo sapiens]
gi|208965372|dbj|BAG72700.1| polymerase (RNA) II (DNA directed) polypeptide F [synthetic
construct]
gi|296487009|tpg|DAA29122.1| TPA: DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Bos taurus]
gi|351699272|gb|EHB02191.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Heterocephalus glaber]
gi|355563660|gb|EHH20222.1| hypothetical protein EGK_03030 [Macaca mulatta]
gi|355784978|gb|EHH65829.1| hypothetical protein EGM_02676 [Macaca fascicularis]
gi|380813882|gb|AFE78815.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Macaca
mulatta]
gi|383419313|gb|AFH32870.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Macaca
mulatta]
gi|384947772|gb|AFI37491.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Macaca
mulatta]
gi|410305086|gb|JAA31143.1| polymerase (RNA) II (DNA directed) polypeptide F [Pan troglodytes]
gi|431905192|gb|ELK10239.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Pteropus alecto]
gi|444517667|gb|ELV11712.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Tupaia
chinensis]
Length = 127
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 119 GVDELIITD 127
>gi|417408211|gb|JAA50672.1| Putative dna-directed rna polymerases i ii and iii subunit rpabc2,
partial [Desmodus rotundus]
Length = 157
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 89 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 148
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 149 GVDELIITD 157
>gi|410901637|ref|XP_003964302.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Takifugu rubripes]
Length = 127
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK+RKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G DEL I D
Sbjct: 119 GCDELIISD 127
>gi|221220940|gb|ACM09131.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Salmo
salar]
Length = 127
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 64/69 (92%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKCRKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G DEL I D
Sbjct: 119 GCDELIITD 127
>gi|321455077|gb|EFX66221.1| hypothetical protein DAPPUDRAFT_64901 [Daphnia pulex]
Length = 103
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK +KIPIIIRRYLPD SYEDW
Sbjct: 35 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQKKIPIIIRRYLPDGSYEDW 94
Query: 143 GIDELKIID 151
GIDEL I D
Sbjct: 95 GIDELVIND 103
>gi|221219376|gb|ACM08349.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Salmo
salar]
Length = 127
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 64/69 (92%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKCRKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G DEL I D
Sbjct: 119 GCDELIITD 127
>gi|426394448|ref|XP_004063508.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2, partial [Gorilla gorilla gorilla]
Length = 120
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 52 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 111
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 112 GVDELIITD 120
>gi|225707814|gb|ACO09753.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Osmerus mordax]
Length = 127
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 71/86 (82%), Gaps = 1/86 (1%)
Query: 67 SKNQIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARK 125
+ Q N ++ + + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RK
Sbjct: 42 GEGQQANQKRITTQYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKGRK 101
Query: 126 IPIIIRRYLPDNSYEDWGIDELKIID 151
IPIIIRRYLPD SYEDWG DEL I D
Sbjct: 102 IPIIIRRYLPDASYEDWGCDELIITD 127
>gi|74225195|dbj|BAE38285.1| unnamed protein product [Mus musculus]
Length = 127
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 119 GVDELIISD 127
>gi|225715824|gb|ACO13758.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Esox
lucius]
Length = 127
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 64/69 (92%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKCRKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G DEL I D
Sbjct: 119 GCDELIITD 127
>gi|13786166|ref|NP_112625.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Rattus
norvegicus]
gi|58037181|ref|NP_081507.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Mus
musculus]
gi|311255104|ref|XP_003126077.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like isoform 1 [Sus scrofa]
gi|311255106|ref|XP_003126078.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like isoform 2 [Sus scrofa]
gi|335287648|ref|XP_003355408.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Sus scrofa]
gi|350583791|ref|XP_003481589.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like isoform 1 [Sus scrofa]
gi|350583793|ref|XP_003481590.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like isoform 2 [Sus scrofa]
gi|350583795|ref|XP_003481591.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like isoform 3 [Sus scrofa]
gi|8134658|sp|O88828.1|RPAB2_RAT RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerase II
subunit F; AltName: Full=RPB6 homolog
gi|47117076|sp|P61219.1|RPAB2_MOUSE RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerase II
subunit F; AltName: Full=RPB6 homolog
gi|3650216|dbj|BAA33414.1| RNA polymerase II [Rattus norvegicus]
gi|12841772|dbj|BAB25345.1| unnamed protein product [Mus musculus]
gi|19353493|gb|AAH24419.1| Polymerase (RNA) II (DNA directed) polypeptide F [Mus musculus]
gi|53733956|gb|AAH83552.1| Polymerase (RNA) II (DNA directed) polypeptide F [Rattus
norvegicus]
gi|148672722|gb|EDL04669.1| polymerase (RNA) II (DNA directed) polypeptide F [Mus musculus]
gi|149065948|gb|EDM15821.1| polymerase (RNA) II (DNA directed) polypeptide F [Rattus
norvegicus]
Length = 127
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 119 GVDELIISD 127
>gi|114050977|ref|NP_001040147.1| DNA-directed RNA polymerase subunit 6-like protein [Bombyx mori]
gi|87248209|gb|ABD36157.1| DNA-directed RNA polymerase subunit 6-like protein [Bombyx mori]
Length = 132
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/70 (90%), Positives = 66/70 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK KIPIIIRRYLPD+SYEDW
Sbjct: 63 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKHGKIPIIIRRYLPDHSYEDW 122
Query: 143 GIDELKIIDR 152
IDEL IID+
Sbjct: 123 SIDELIIIDQ 132
>gi|263173307|gb|ACY69907.1| RNA polymerase subunit K [Cimex lectularius]
Length = 120
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/83 (74%), Positives = 72/83 (86%), Gaps = 1/83 (1%)
Query: 71 IKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPII 129
++ N++ K + +YERARVLGTRALQIAMCAP+MVEL G+TDPL+IA KELK RKIPII
Sbjct: 38 VQKANRITTKYMTKYERARVLGTRALQIAMCAPIMVELGGDTDPLEIAKKELKQRKIPII 97
Query: 130 IRRYLPDNSYEDWGIDELKIIDR 152
IRRYLPDNSYEDWGIDEL + DR
Sbjct: 98 IRRYLPDNSYEDWGIDELIVTDR 120
>gi|229366770|gb|ACQ58365.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Anoplopoma fimbria]
Length = 127
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/69 (89%), Positives = 64/69 (92%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK+RKIPIIIRRY PD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYPPDGSYEDW 118
Query: 143 GIDELKIID 151
G DEL I D
Sbjct: 119 GCDELIITD 127
>gi|195054236|ref|XP_001994032.1| GH17834 [Drosophila grimshawi]
gi|193895902|gb|EDV94768.1| GH17834 [Drosophila grimshawi]
Length = 131
Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/69 (85%), Positives = 66/69 (95%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAP+MVEL+GETDPLQIAMKELK +KIPIIIRRYLPD+SYEDW
Sbjct: 62 KYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDW 121
Query: 143 GIDELKIID 151
IDEL ++D
Sbjct: 122 SIDELVMVD 130
>gi|17864588|ref|NP_524910.1| RNA polymerase II 18kD subunit [Drosophila melanogaster]
gi|194898719|ref|XP_001978915.1| GG12771 [Drosophila erecta]
gi|195497311|ref|XP_002096044.1| GE25464 [Drosophila yakuba]
gi|2500630|sp|Q24320.1|RPAB2_DROME RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=RPB6 homolog
gi|717185|emb|CAA87655.1| RNA polymerase subunit [Drosophila melanogaster]
gi|7296761|gb|AAF52039.1| RNA polymerase II 18kD subunit [Drosophila melanogaster]
gi|25012908|gb|AAN71541.1| RH21608p [Drosophila melanogaster]
gi|190650618|gb|EDV47873.1| GG12771 [Drosophila erecta]
gi|194182145|gb|EDW95756.1| GE25464 [Drosophila yakuba]
gi|220950520|gb|ACL87803.1| RpII18-PA [synthetic construct]
gi|220959430|gb|ACL92258.1| RpII18-PA [synthetic construct]
Length = 131
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 59/69 (85%), Positives = 66/69 (95%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAP+MVEL+GETDPLQIAMKELK +KIPIIIRRYLPD+SYEDW
Sbjct: 62 KYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDW 121
Query: 143 GIDELKIID 151
IDEL ++D
Sbjct: 122 SIDELIMVD 130
>gi|229366082|gb|ACQ58021.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Anoplopoma fimbria]
Length = 127
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/69 (88%), Positives = 63/69 (91%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIA CAPVMVELEGETDPLQIAMKELK+RKIP IIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIATCAPVMVELEGETDPLQIAMKELKSRKIPTIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G DEL I D
Sbjct: 119 GCDELVITD 127
>gi|156354426|ref|XP_001623395.1| predicted protein [Nematostella vectensis]
gi|156210090|gb|EDO31295.1| predicted protein [Nematostella vectensis]
Length = 71
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/69 (88%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD S+EDW
Sbjct: 3 KYERARVLGTRALQISMGAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDGSHEDW 62
Query: 143 GIDELKIID 151
GIDEL + D
Sbjct: 63 GIDELIVTD 71
>gi|195152585|ref|XP_002017217.1| GL21641 [Drosophila persimilis]
gi|198453903|ref|XP_001359394.2| GA11109 [Drosophila pseudoobscura pseudoobscura]
gi|194112274|gb|EDW34317.1| GL21641 [Drosophila persimilis]
gi|198132563|gb|EAL28540.2| GA11109 [Drosophila pseudoobscura pseudoobscura]
Length = 131
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 59/69 (85%), Positives = 66/69 (95%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAP+MVEL+GETDPLQIAMKELK +KIPIIIRRYLPD+SYEDW
Sbjct: 62 KYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDW 121
Query: 143 GIDELKIID 151
IDEL ++D
Sbjct: 122 SIDELIMVD 130
>gi|405956092|gb|EKC22908.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Crassostrea gigas]
Length = 128
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/65 (92%), Positives = 63/65 (96%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRR+LPD S+EDW
Sbjct: 60 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRFLPDGSFEDW 119
Query: 143 GIDEL 147
GIDEL
Sbjct: 120 GIDEL 124
>gi|195343629|ref|XP_002038398.1| GM10803 [Drosophila sechellia]
gi|194133419|gb|EDW54935.1| GM10803 [Drosophila sechellia]
Length = 131
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/69 (85%), Positives = 66/69 (95%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAP+MVEL+GETDPLQIAMKELK +KIPIIIRRYLPD+SYEDW
Sbjct: 62 KYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDW 121
Query: 143 GIDELKIID 151
IDEL ++D
Sbjct: 122 SIDELIMVD 130
>gi|194741754|ref|XP_001953352.1| GF17248 [Drosophila ananassae]
gi|190626411|gb|EDV41935.1| GF17248 [Drosophila ananassae]
Length = 131
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/69 (85%), Positives = 66/69 (95%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAP+MVEL+GETDPLQIAMKELK +KIPIIIRRYLPD+SYEDW
Sbjct: 62 KYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDW 121
Query: 143 GIDELKIID 151
IDEL ++D
Sbjct: 122 SIDELIMVD 130
>gi|195444855|ref|XP_002070061.1| GK11847 [Drosophila willistoni]
gi|194166146|gb|EDW81047.1| GK11847 [Drosophila willistoni]
Length = 132
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 66/69 (95%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAP+MVEL+GETDPLQIAMKELK +KIPIIIRR+LPD+SYEDW
Sbjct: 63 KYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRFLPDHSYEDW 122
Query: 143 GIDELKIID 151
IDEL ++D
Sbjct: 123 SIDELIMVD 131
>gi|260818258|ref|XP_002604300.1| hypothetical protein BRAFLDRAFT_115114 [Branchiostoma floridae]
gi|229289626|gb|EEN60311.1| hypothetical protein BRAFLDRAFT_115114 [Branchiostoma floridae]
Length = 129
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/69 (88%), Positives = 64/69 (92%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAM APVMVELEGETDPL IAMKELK RKIPIIIRRYLPD S+EDW
Sbjct: 61 KYERARVLGTRALQIAMGAPVMVELEGETDPLHIAMKELKVRKIPIIIRRYLPDGSFEDW 120
Query: 143 GIDELKIID 151
GIDEL I+D
Sbjct: 121 GIDELIILD 129
>gi|195396256|ref|XP_002056748.1| GJ11106 [Drosophila virilis]
gi|194143457|gb|EDW59860.1| GJ11106 [Drosophila virilis]
Length = 131
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 66/69 (95%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAP+MVEL+GETDPLQIAMKELK +KIPIIIRR+LPD+SYEDW
Sbjct: 62 KYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRFLPDHSYEDW 121
Query: 143 GIDELKIID 151
IDEL ++D
Sbjct: 122 SIDELIMVD 130
>gi|195111658|ref|XP_002000395.1| GI22548 [Drosophila mojavensis]
gi|193916989|gb|EDW15856.1| GI22548 [Drosophila mojavensis]
Length = 131
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 66/69 (95%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAP+MVEL+GETDPLQIAMKELK +KIPIIIRR+LPD+SYEDW
Sbjct: 62 KYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRFLPDHSYEDW 121
Query: 143 GIDELKIID 151
IDEL ++D
Sbjct: 122 SIDELIMVD 130
>gi|440906517|gb|ELR56770.1| hypothetical protein M91_14188 [Bos grunniens mutus]
Length = 128
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/70 (90%), Positives = 65/70 (92%), Gaps = 1/70 (1%)
Query: 83 RYERARVLGTRALQIAM-CAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERARVLGTRALQIAM CAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYED
Sbjct: 59 KYERARVLGTRALQIAMMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYED 118
Query: 142 WGIDELKIID 151
WG+DEL I D
Sbjct: 119 WGVDELIITD 128
>gi|195605420|gb|ACG24540.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Zea mays]
gi|195606438|gb|ACG25049.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Zea mays]
gi|195616336|gb|ACG29998.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Zea mays]
gi|413933719|gb|AFW68270.1| DNA-directed RNA polymerase I, II, and III polypeptide [Zea mays]
Length = 142
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 68/86 (79%)
Query: 66 KSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARK 125
K + + K K +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARK
Sbjct: 48 KEQEKTKRERKTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARK 107
Query: 126 IPIIIRRYLPDNSYEDWGIDELKIID 151
IP IRRYLPD SYEDWG+DEL + D
Sbjct: 108 IPFTIRRYLPDGSYEDWGVDELIVED 133
>gi|194698110|gb|ACF83139.1| unknown [Zea mays]
gi|414871592|tpg|DAA50149.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide isoform
1 [Zea mays]
gi|414871593|tpg|DAA50150.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide isoform
2 [Zea mays]
Length = 142
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 68/86 (79%)
Query: 66 KSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARK 125
K + + K K +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARK
Sbjct: 48 KEQEKTKRERKTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARK 107
Query: 126 IPIIIRRYLPDNSYEDWGIDELKIID 151
IP IRRYLPD SYEDWG+DEL + D
Sbjct: 108 IPFTIRRYLPDGSYEDWGVDELIVED 133
>gi|226507150|ref|NP_001149930.1| LOC100283558 [Zea mays]
gi|195635557|gb|ACG37247.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Zea mays]
Length = 142
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 68/86 (79%)
Query: 66 KSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARK 125
K + + K K +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARK
Sbjct: 48 KEQEKTKRERKTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARK 107
Query: 126 IPIIIRRYLPDNSYEDWGIDELKIID 151
IP IRRYLPD SYEDWG+DEL + D
Sbjct: 108 IPFTIRRYLPDGSYEDWGVDELIVED 133
>gi|226498696|ref|NP_001148912.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Zea mays]
gi|195623208|gb|ACG33434.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Zea mays]
Length = 142
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 68/86 (79%)
Query: 66 KSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARK 125
K + + K K +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARK
Sbjct: 48 KEQEKTKRERKTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARK 107
Query: 126 IPIIIRRYLPDNSYEDWGIDELKIID 151
IP IRRYLPD SYEDWG+DEL + D
Sbjct: 108 IPFTIRRYLPDGSYEDWGVDELIVED 133
>gi|449691499|ref|XP_004212693.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like, partial [Hydra magnipapillata]
Length = 122
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/69 (88%), Positives = 64/69 (92%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APVMVELEGETDPLQIAMKELK RKIPIIIRR+LPD SYEDW
Sbjct: 55 KYERARVLGTRALQISMNAPVMVELEGETDPLQIAMKELKVRKIPIIIRRFLPDGSYEDW 114
Query: 143 GIDELKIID 151
IDEL IID
Sbjct: 115 AIDEL-IID 122
>gi|74151658|dbj|BAE41175.1| unnamed protein product [Mus musculus]
Length = 127
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/69 (88%), Positives = 63/69 (91%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELE ETDPL IAMK LKARKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELELETDPLLIAMKGLKARKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 119 GVDELIISD 127
>gi|125600139|gb|EAZ39715.1| hypothetical protein OsJ_24153 [Oryza sativa Japonica Group]
Length = 177
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 68/86 (79%)
Query: 66 KSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARK 125
K + + K + +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARK
Sbjct: 83 KEQEKTARPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARK 142
Query: 126 IPIIIRRYLPDNSYEDWGIDELKIID 151
IP IRRYLPD SYEDWG+DEL + D
Sbjct: 143 IPFTIRRYLPDGSYEDWGVDELIVED 168
>gi|115453939|ref|NP_001050570.1| Os03g0586600 [Oryza sativa Japonica Group]
gi|50399946|gb|AAT76334.1| putative DNA-directed RNA polymerase II subunit [Oryza sativa
Japonica Group]
gi|108709558|gb|ABF97353.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative, expressed [Oryza sativa Japonica Group]
gi|113549041|dbj|BAF12484.1| Os03g0586600 [Oryza sativa Japonica Group]
gi|125586969|gb|EAZ27633.1| hypothetical protein OsJ_11577 [Oryza sativa Japonica Group]
gi|215678566|dbj|BAG92221.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 142
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 69/86 (80%)
Query: 66 KSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARK 125
K + + + K + +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARK
Sbjct: 48 KEQEKTQRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARK 107
Query: 126 IPIIIRRYLPDNSYEDWGIDELKIID 151
IP IRRYLPD SYEDWG+DEL + D
Sbjct: 108 IPFTIRRYLPDGSYEDWGVDELIVED 133
>gi|125544663|gb|EAY90802.1| hypothetical protein OsI_12404 [Oryza sativa Indica Group]
Length = 143
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 69/86 (80%)
Query: 66 KSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARK 125
K + + + K + +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARK
Sbjct: 49 KEQEKTQRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARK 108
Query: 126 IPIIIRRYLPDNSYEDWGIDELKIID 151
IP IRRYLPD SYEDWG+DEL + D
Sbjct: 109 IPFTIRRYLPDGSYEDWGVDELIVED 134
>gi|115471967|ref|NP_001059582.1| Os07g0463100 [Oryza sativa Japonica Group]
gi|22093730|dbj|BAC07023.1| putative DNA-directed RNA polymerase Iia [Oryza sativa Japonica
Group]
gi|113611118|dbj|BAF21496.1| Os07g0463100 [Oryza sativa Japonica Group]
gi|125558240|gb|EAZ03776.1| hypothetical protein OsI_25904 [Oryza sativa Indica Group]
gi|215768441|dbj|BAH00670.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 142
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 68/86 (79%)
Query: 66 KSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARK 125
K + + K + +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARK
Sbjct: 48 KEQEKTARPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARK 107
Query: 126 IPIIIRRYLPDNSYEDWGIDELKIID 151
IP IRRYLPD SYEDWG+DEL + D
Sbjct: 108 IPFTIRRYLPDGSYEDWGVDELIVED 133
>gi|198438019|ref|XP_002129573.1| PREDICTED: similar to DNA directed RNA polymerase II polypeptide F
[Ciona intestinalis]
Length = 128
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/67 (86%), Positives = 63/67 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQ++M APVMVELEGETDPLQIAMKELKA+KIPIIIRRY+PD SYEDW
Sbjct: 61 KYERARVLGTRALQLSMNAPVMVELEGETDPLQIAMKELKAKKIPIIIRRYMPDGSYEDW 120
Query: 143 GIDELKI 149
IDEL I
Sbjct: 121 AIDELII 127
>gi|302822553|ref|XP_002992934.1| hypothetical protein SELMODRAFT_236641 [Selaginella moellendorffii]
gi|300139279|gb|EFJ06023.1| hypothetical protein SELMODRAFT_236641 [Selaginella moellendorffii]
Length = 141
Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/92 (63%), Positives = 68/92 (73%)
Query: 60 NHYMKVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMK 119
+ + +S+ K +YERARVLGTRALQI+M APVMVELEGETDPL+IAMK
Sbjct: 42 GEFQEAESEQVSDKPRKTTKYMTKYERARVLGTRALQISMNAPVMVELEGETDPLEIAMK 101
Query: 120 ELKARKIPIIIRRYLPDNSYEDWGIDELKIID 151
EL+ RKIP IRRYLPD SYEDWG+DEL + D
Sbjct: 102 ELRERKIPFTIRRYLPDGSYEDWGVDELIVED 133
>gi|242043886|ref|XP_002459814.1| hypothetical protein SORBIDRAFT_02g011150 [Sorghum bicolor]
gi|241923191|gb|EER96335.1| hypothetical protein SORBIDRAFT_02g011150 [Sorghum bicolor]
Length = 143
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 67/86 (77%)
Query: 66 KSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARK 125
K + +I K +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARK
Sbjct: 49 KEQEKIARARKTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARK 108
Query: 126 IPIIIRRYLPDNSYEDWGIDELKIID 151
IP IRRYLPD SYEDW +DEL + D
Sbjct: 109 IPFTIRRYLPDGSYEDWSVDELIVED 134
>gi|326495054|dbj|BAJ85623.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 142
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/69 (81%), Positives = 63/69 (91%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARKIP IRRYLPD SYEDW
Sbjct: 65 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDGSYEDW 124
Query: 143 GIDELKIID 151
G+DEL + D
Sbjct: 125 GVDELIVED 133
>gi|357149556|ref|XP_003575153.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Brachypodium distachyon]
Length = 142
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/69 (81%), Positives = 63/69 (91%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARKIP IRRYLPD SYEDW
Sbjct: 65 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDGSYEDW 124
Query: 143 GIDELKIID 151
G+DEL + D
Sbjct: 125 GVDELIVED 133
>gi|357121247|ref|XP_003562332.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Brachypodium distachyon]
Length = 142
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/69 (81%), Positives = 63/69 (91%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARKIP IRRYLPD SYEDW
Sbjct: 65 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDGSYEDW 124
Query: 143 GIDELKIID 151
G+DEL + D
Sbjct: 125 GVDELIVED 133
>gi|291240385|ref|XP_002740094.1| PREDICTED: DNA directed RNA polymerase II polypeptide F-like
[Saccoglossus kowalevskii]
Length = 131
Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 60/69 (86%), Positives = 64/69 (92%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAM APVMVELEGETDPL+IA KELK RKIPIIIRRY+PD S+EDW
Sbjct: 62 KYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKVRKIPIIIRRYMPDGSHEDW 121
Query: 143 GIDELKIID 151
GIDEL IID
Sbjct: 122 GIDEL-IID 129
>gi|351724737|ref|NP_001236044.1| uncharacterized protein LOC100305739 [Glycine max]
gi|255626491|gb|ACU13590.1| unknown [Glycine max]
Length = 142
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 68/86 (79%)
Query: 66 KSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARK 125
+ + +K K + +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RK
Sbjct: 48 EEEQPVKRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK 107
Query: 126 IPIIIRRYLPDNSYEDWGIDELKIID 151
IP IRRYLPD SYEDWG+DEL + D
Sbjct: 108 IPFTIRRYLPDGSYEDWGVDELIVED 133
>gi|302796521|ref|XP_002980022.1| hypothetical protein SELMODRAFT_111873 [Selaginella moellendorffii]
gi|300152249|gb|EFJ18892.1| hypothetical protein SELMODRAFT_111873 [Selaginella moellendorffii]
Length = 96
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 68/84 (80%), Gaps = 1/84 (1%)
Query: 69 NQIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIP 127
Q+ + + K + +YERARVLGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP
Sbjct: 5 EQVSDKPRKTTKYMTKYERARVLGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIP 64
Query: 128 IIIRRYLPDNSYEDWGIDELKIID 151
IRRYLPD SYEDWG+DEL + D
Sbjct: 65 FTIRRYLPDGSYEDWGVDELIVED 88
>gi|225446748|ref|XP_002282723.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Vitis vinifera]
gi|302143496|emb|CBI22057.3| unnamed protein product [Vitis vinifera]
Length = 141
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%)
Query: 66 KSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARK 125
K + ++ + K + +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RK
Sbjct: 47 KEQVPVERSRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK 106
Query: 126 IPIIIRRYLPDNSYEDWGIDELKIID 151
IP IRRYLPD SYEDWG+DEL + D
Sbjct: 107 IPFTIRRYLPDGSYEDWGVDELIVED 132
>gi|147794797|emb|CAN62586.1| hypothetical protein VITISV_000776 [Vitis vinifera]
Length = 140
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%)
Query: 66 KSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARK 125
K + ++ + K + +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RK
Sbjct: 46 KEQVPVERSRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK 105
Query: 126 IPIIIRRYLPDNSYEDWGIDELKIID 151
IP IRRYLPD SYEDWG+DEL + D
Sbjct: 106 IPFTIRRYLPDGSYEDWGVDELIVED 131
>gi|340379028|ref|XP_003388029.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Amphimedon queenslandica]
Length = 129
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/69 (82%), Positives = 66/69 (95%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APVMVELEGETDPL+IAMKELKA+K+PIIIRR+LP++SYEDW
Sbjct: 62 KYERARVLGTRALQISMGAPVMVELEGETDPLKIAMKELKAKKVPIIIRRFLPNSSYEDW 121
Query: 143 GIDELKIID 151
+DEL IID
Sbjct: 122 AVDEL-IID 129
>gi|224136924|ref|XP_002322450.1| predicted protein [Populus trichocarpa]
gi|222869446|gb|EEF06577.1| predicted protein [Populus trichocarpa]
Length = 143
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 62/70 (88%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYED
Sbjct: 65 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYED 124
Query: 142 WGIDELKIID 151
WG+DEL + D
Sbjct: 125 WGVDELIVED 134
>gi|260941988|ref|XP_002615160.1| hypothetical protein CLUG_05175 [Clavispora lusitaniae ATCC 42720]
gi|238851583|gb|EEQ41047.1| hypothetical protein CLUG_05175 [Clavispora lusitaniae ATCC 42720]
Length = 156
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 77/110 (70%), Gaps = 9/110 (8%)
Query: 49 IKGERALVLILNHYMKVKSKNQIKNNNKLNIKQ---------IRYERARVLGTRALQIAM 99
+K E ++ Y + ++ ++K +L I + +YERARVLGTRALQI++
Sbjct: 45 MKAEDGRTIVHGGYSEADAQVRVKTTKELAIPKEDRTTTPYMTKYERARVLGTRALQISL 104
Query: 100 CAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKI 149
APV+V++EGETDPLQIAMKEL RKIP++IRRYLPD SYEDWG DEL I
Sbjct: 105 NAPVLVDIEGETDPLQIAMKELAQRKIPLVIRRYLPDGSYEDWGCDELII 154
>gi|224284680|gb|ACN40072.1| unknown [Picea sitchensis]
Length = 147
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 62/69 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYEDW
Sbjct: 70 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDW 129
Query: 143 GIDELKIID 151
G+DEL + D
Sbjct: 130 GVDELIVED 138
>gi|4960150|gb|AAD34613.1|AF153277_1 DNA-directed RNA polymerase IIa [Nicotiana tabacum]
gi|4960152|gb|AAD34614.1|AF153278_1 DNA-directed RNA polymerase IIb [Nicotiana tabacum]
Length = 143
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 70/94 (74%)
Query: 58 ILNHYMKVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIA 117
+L + + ++ K + +YERAR+LGTRALQI+M APVMVELEGETDPL+IA
Sbjct: 41 LLGEGEEKTEQEPVERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 100
Query: 118 MKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 151
MKEL+ RKIP IRRYLPD SYEDWG+DEL + D
Sbjct: 101 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 134
>gi|348673189|gb|EGZ13008.1| hypothetical protein PHYSODRAFT_286529 [Phytophthora sojae]
Length = 135
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/67 (83%), Positives = 63/67 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APVMV++EGETDPL+IAMKEL+ RKIPIIIRRYLPDNS+EDW
Sbjct: 68 KYERARVLGTRALQISMNAPVMVDIEGETDPLKIAMKELRERKIPIIIRRYLPDNSFEDW 127
Query: 143 GIDELKI 149
IDEL I
Sbjct: 128 SIDELII 134
>gi|301102317|ref|XP_002900246.1| DNA-directed RNA polymerase I, II, and III subunit RPABC2, putative
[Phytophthora infestans T30-4]
gi|262102398|gb|EEY60450.1| DNA-directed RNA polymerase I, II, and III subunit RPABC2, putative
[Phytophthora infestans T30-4]
Length = 136
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/67 (83%), Positives = 63/67 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APVMV++EGETDPL+IAMKEL+ RKIPIIIRRYLPDNS+EDW
Sbjct: 69 KYERARVLGTRALQISMNAPVMVDIEGETDPLKIAMKELRERKIPIIIRRYLPDNSFEDW 128
Query: 143 GIDELKI 149
IDEL I
Sbjct: 129 SIDELII 135
>gi|225455445|ref|XP_002279544.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 isoform 1 [Vitis vinifera]
gi|297741100|emb|CBI31831.3| unnamed protein product [Vitis vinifera]
Length = 142
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/81 (69%), Positives = 66/81 (81%)
Query: 71 IKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIII 130
++ K + +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP I
Sbjct: 53 VERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTI 112
Query: 131 RRYLPDNSYEDWGIDELKIID 151
RRYLPD SYEDWG+DEL + D
Sbjct: 113 RRYLPDGSYEDWGVDELIVED 133
>gi|116786595|gb|ABK24167.1| unknown [Picea sitchensis]
Length = 147
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 62/69 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYEDW
Sbjct: 70 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDW 129
Query: 143 GIDELKIID 151
G+DEL + D
Sbjct: 130 GVDELIVED 138
>gi|290760634|gb|ADD59902.1| DNA-directed RNA polymerase II polypeptide F [Hemiscyllium
ocellatum]
Length = 110
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/59 (96%), Positives = 58/59 (98%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD SYED
Sbjct: 52 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDGSYED 110
>gi|224120092|ref|XP_002318240.1| predicted protein [Populus trichocarpa]
gi|222858913|gb|EEE96460.1| predicted protein [Populus trichocarpa]
Length = 143
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 68/86 (79%)
Query: 66 KSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARK 125
+ + ++ K + +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RK
Sbjct: 49 EEQEPVERPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK 108
Query: 126 IPIIIRRYLPDNSYEDWGIDELKIID 151
IP IRRYLPD SYEDWG+DEL + D
Sbjct: 109 IPFTIRRYLPDGSYEDWGVDELIVED 134
>gi|449437154|ref|XP_004136357.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Cucumis sativus]
Length = 142
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 62/69 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYEDW
Sbjct: 65 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDW 124
Query: 143 GIDELKIID 151
G+DEL + D
Sbjct: 125 GVDELIVED 133
>gi|294462014|gb|ADE76562.1| unknown [Picea sitchensis]
Length = 147
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 62/69 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYEDW
Sbjct: 70 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDW 129
Query: 143 GIDELKIID 151
G+DEL + D
Sbjct: 130 GVDELIVED 138
>gi|195568410|ref|XP_002102209.1| GD19782 [Drosophila simulans]
gi|194198136|gb|EDX11712.1| GD19782 [Drosophila simulans]
Length = 131
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 63/69 (91%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAP+MVEL+GETDPLQIAMKELK +KIP+I R LPD+SYEDW
Sbjct: 62 KYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKPKKIPLIFRPPLPDHSYEDW 121
Query: 143 GIDELKIID 151
IDEL ++D
Sbjct: 122 SIDELIMVD 130
>gi|356535896|ref|XP_003536478.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Glycine max]
Length = 142
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 68/86 (79%)
Query: 66 KSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARK 125
+ + ++ K + +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RK
Sbjct: 48 EEEQPVERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK 107
Query: 126 IPIIIRRYLPDNSYEDWGIDELKIID 151
IP IRRYLPD SYEDWG+DEL + D
Sbjct: 108 IPFTIRRYLPDGSYEDWGVDELIVED 133
>gi|357509805|ref|XP_003625191.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Medicago truncatula]
gi|124360124|gb|ABN08140.1| DNA-directed RNA polymerase, 14 to 18 kDa subunit [Medicago
truncatula]
gi|355500206|gb|AES81409.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Medicago truncatula]
gi|388508874|gb|AFK42503.1| unknown [Medicago truncatula]
gi|388517849|gb|AFK46986.1| unknown [Medicago truncatula]
Length = 145
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 62/69 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYEDW
Sbjct: 68 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDW 127
Query: 143 GIDELKIID 151
G+DEL + D
Sbjct: 128 GVDELIVED 136
>gi|255539539|ref|XP_002510834.1| DNA-directed RNA polymerase subunit rpb6, putative [Ricinus
communis]
gi|223549949|gb|EEF51436.1| DNA-directed RNA polymerase subunit rpb6, putative [Ricinus
communis]
Length = 124
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 62/69 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYEDW
Sbjct: 47 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDW 106
Query: 143 GIDELKIID 151
G+DEL + D
Sbjct: 107 GVDELIVED 115
>gi|449446057|ref|XP_004140788.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Cucumis sativus]
gi|449485538|ref|XP_004157202.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Cucumis sativus]
Length = 143
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 62/69 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYEDW
Sbjct: 66 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDW 125
Query: 143 GIDELKIID 151
G+DEL + D
Sbjct: 126 GVDELIVED 134
>gi|170593167|ref|XP_001901336.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Brugia malayi]
gi|158591403|gb|EDP30016.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative [Brugia malayi]
gi|402594257|gb|EJW88183.1| DNA-directed RNA polymerase I [Wuchereria bancrofti]
Length = 128
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 62/69 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQIAM APVMVELEGETDPL+IA KELK +KIP+I+RRYLPD S+EDW
Sbjct: 59 KYERARILGTRALQIAMGAPVMVELEGETDPLEIARKELKHQKIPLIVRRYLPDGSFEDW 118
Query: 143 GIDELKIID 151
+DEL + D
Sbjct: 119 SVDELDVTD 127
>gi|393911585|gb|EJD76374.1| hypothetical protein LOAG_16668 [Loa loa]
Length = 128
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 62/69 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQIAM APVMVELEGETDPL+IA KELK +KIP+I+RRYLPD S+EDW
Sbjct: 59 KYERARILGTRALQIAMGAPVMVELEGETDPLEIARKELKHQKIPLIVRRYLPDGSFEDW 118
Query: 143 GIDELKIID 151
+DEL + D
Sbjct: 119 SVDELDVTD 127
>gi|168046743|ref|XP_001775832.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672839|gb|EDQ59371.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 119
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 61/69 (88%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APVMV LEGETDPL+IAMKEL+ RKIP IRRYLPD SYEDW
Sbjct: 44 KYERARVLGTRALQISMNAPVMVNLEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDW 103
Query: 143 GIDELKIID 151
G+DEL + D
Sbjct: 104 GVDELIVED 112
>gi|217071630|gb|ACJ84175.1| unknown [Medicago truncatula]
Length = 145
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/69 (78%), Positives = 61/69 (88%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+ GTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYEDW
Sbjct: 68 KYERARIFGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDW 127
Query: 143 GIDELKIID 151
G+DEL + D
Sbjct: 128 GVDELIVED 136
>gi|17531543|ref|NP_496278.1| Protein RPB-6 [Caenorhabditis elegans]
gi|2500631|sp|Q17684.1|RPAB2_CAEEL RecName: Full=Probable DNA-directed RNA polymerases I, II, and III
subunit RPABC2; Short=RNA polymerases I, II, and III
subunit ABC2; AltName: Full=RPB6 homolog
gi|3874008|emb|CAA90053.1| Protein RPB-6 [Caenorhabditis elegans]
Length = 137
Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 62/69 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAM APVMVELEGETDPL+IA KELK R+IPII+RRYLPD SYEDW
Sbjct: 68 KYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIVRRYLPDGSYEDW 127
Query: 143 GIDELKIID 151
D+L++ D
Sbjct: 128 PTDQLQLAD 136
>gi|320170068|gb|EFW46967.1| RNA polymerase II core subunit [Capsaspora owczarzaki ATCC 30864]
Length = 139
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 52/67 (77%), Positives = 63/67 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M AP+MV+ +GETDPLQIAMKEL+ +KIPIIIRR+LPD SYEDW
Sbjct: 72 KYERARVLGTRALQISMNAPIMVQRDGETDPLQIAMKELREKKIPIIIRRFLPDGSYEDW 131
Query: 143 GIDELKI 149
G+D+L+I
Sbjct: 132 GVDQLEI 138
>gi|254569290|ref|XP_002491755.1| RNA polymerase subunit ABC23, common to RNA polymerases I, II, and
III [Komagataella pastoris GS115]
gi|238031552|emb|CAY69475.1| RNA polymerase subunit ABC23, common to RNA polymerases I, II, and
III [Komagataella pastoris GS115]
gi|328351744|emb|CCA38143.1| DNA-directed RNA Polymerase II subunit F [Komagataella pastoris CBS
7435]
Length = 155
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/69 (78%), Positives = 63/69 (91%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V++EGETDPLQIAMKEL RKIP++IRRYLPD SYEDW
Sbjct: 87 KYERARILGTRALQISMNAPVLVDIEGETDPLQIAMKELSQRKIPLVIRRYLPDGSYEDW 146
Query: 143 GIDELKIID 151
G DEL I+D
Sbjct: 147 GCDEL-IVD 154
>gi|388490954|gb|AFK33543.1| unknown [Lotus japonicus]
Length = 144
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 65/81 (80%)
Query: 71 IKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIII 130
++ K + +YERAR+LGTRALQI+M APVMVEL GETDPL+IAMKEL+ RKIP I
Sbjct: 55 VQRPRKTSKYMTKYERARILGTRALQISMNAPVMVELAGETDPLEIAMKELRERKIPFTI 114
Query: 131 RRYLPDNSYEDWGIDELKIID 151
RRYLPD SYEDWG+DEL + D
Sbjct: 115 RRYLPDGSYEDWGVDELIVED 135
>gi|15224039|ref|NP_178540.1| RNA polymerase Rpb6 [Arabidopsis thaliana]
gi|4544434|gb|AAD22343.1| putative DNA-directed RNA polymerase II subunit [Arabidopsis
thaliana]
gi|33589774|gb|AAQ22653.1| At2g04630 [Arabidopsis thaliana]
gi|110738832|dbj|BAF01339.1| putative DNA-directed RNA polymerase II subunit [Arabidopsis
thaliana]
gi|330250757|gb|AEC05851.1| RNA polymerase Rpb6 [Arabidopsis thaliana]
Length = 144
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/69 (78%), Positives = 62/69 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYE+W
Sbjct: 67 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDMSYEEW 126
Query: 143 GIDELKIID 151
G+DEL + D
Sbjct: 127 GVDELIVED 135
>gi|297792515|ref|XP_002864142.1| hypothetical protein ARALYDRAFT_495261 [Arabidopsis lyrata subsp.
lyrata]
gi|297309977|gb|EFH40401.1| hypothetical protein ARALYDRAFT_495261 [Arabidopsis lyrata subsp.
lyrata]
Length = 144
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 62/69 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD S+E+W
Sbjct: 67 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDGSFEEW 126
Query: 143 GIDELKIID 151
G+DEL + D
Sbjct: 127 GVDELIVED 135
>gi|448090011|ref|XP_004196962.1| Piso0_004196 [Millerozyma farinosa CBS 7064]
gi|448094390|ref|XP_004197993.1| Piso0_004196 [Millerozyma farinosa CBS 7064]
gi|359378384|emb|CCE84643.1| Piso0_004196 [Millerozyma farinosa CBS 7064]
gi|359379415|emb|CCE83612.1| Piso0_004196 [Millerozyma farinosa CBS 7064]
Length = 158
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 63/70 (90%), Gaps = 1/70 (1%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERARVLGTRALQI++ APV+V++EGETDPLQIAMKEL RKIP+++RRYLPD SYED
Sbjct: 89 TKYERARVLGTRALQISLNAPVLVDIEGETDPLQIAMKELSQRKIPLVVRRYLPDGSYED 148
Query: 142 WGIDELKIID 151
WG DEL IID
Sbjct: 149 WGCDEL-IID 157
>gi|297835766|ref|XP_002885765.1| hypothetical protein ARALYDRAFT_899271 [Arabidopsis lyrata subsp.
lyrata]
gi|297331605|gb|EFH62024.1| hypothetical protein ARALYDRAFT_899271 [Arabidopsis lyrata subsp.
lyrata]
Length = 144
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 62/69 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD S+E+W
Sbjct: 67 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDGSFEEW 126
Query: 143 GIDELKIID 151
G+DEL + D
Sbjct: 127 GVDELIVED 135
>gi|268532262|ref|XP_002631259.1| C. briggsae CBR-RPB-6 protein [Caenorhabditis briggsae]
gi|209573629|sp|A8WSV7.1|RPAB2_CAEBR RecName: Full=Probable DNA-directed RNA polymerases I, II, and III
subunit RPABC2; Short=RNA polymerases I, II, and III
subunit ABC2; AltName: Full=RPB6 homolog
Length = 138
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/69 (78%), Positives = 62/69 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAM APVMVELEGETDPL+IA KELK R++PIIIRRYLPD SYEDW
Sbjct: 69 KYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRVPIIIRRYLPDGSYEDW 128
Query: 143 GIDELKIID 151
++L++ D
Sbjct: 129 PTEQLQLAD 137
>gi|15242235|ref|NP_200007.1| RNA polymerase Rpb6 [Arabidopsis thaliana]
gi|13878077|gb|AAK44116.1|AF370301_1 putative DNA-directed RNA polymerase II subunit [Arabidopsis
thaliana]
gi|10177729|dbj|BAB11042.1| DNA-directed RNA polymerase II subunit-like protein [Arabidopsis
thaliana]
gi|17104747|gb|AAL34262.1| putative DNA-directed RNA polymerase II subunit [Arabidopsis
thaliana]
gi|21595784|gb|AAM66131.1| DNA-directed RNA polymerase II subunit-like protein [Arabidopsis
thaliana]
gi|332008765|gb|AED96148.1| RNA polymerase Rpb6 [Arabidopsis thaliana]
Length = 144
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 62/69 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD S+E+W
Sbjct: 67 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDGSFEEW 126
Query: 143 GIDELKIID 151
G+DEL + D
Sbjct: 127 GVDELIVED 135
>gi|312089104|ref|XP_003146119.1| hypothetical protein LOAG_10547 [Loa loa]
Length = 72
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 62/69 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQIAM APVMVELEGETDPL+IA KELK +KIP+I+RRYLPD S+EDW
Sbjct: 3 KYERARILGTRALQIAMGAPVMVELEGETDPLEIARKELKHQKIPLIVRRYLPDGSFEDW 62
Query: 143 GIDELKIID 151
+DEL + D
Sbjct: 63 SVDELDVTD 71
>gi|126136555|ref|XP_001384801.1| subunit common to RNA polymerases I, II, and III [Scheffersomyces
stipitis CBS 6054]
gi|126092023|gb|ABN66772.1| subunit common to RNA polymerases I, II, and III [Scheffersomyces
stipitis CBS 6054]
Length = 157
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 63/71 (88%), Gaps = 1/71 (1%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERARVLGTRALQI++ APV+V++EGETDPLQIAMKEL RKIP++IRRYLPD SYED
Sbjct: 88 TKYERARVLGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKIPLVIRRYLPDGSYED 147
Query: 142 WGIDELKIIDR 152
WG DEL I+D
Sbjct: 148 WGCDEL-IVDH 157
>gi|320582090|gb|EFW96308.1| DNA-directed RNA polymerases I [Ogataea parapolymorpha DL-1]
Length = 151
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 64/70 (91%), Gaps = 1/70 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V++EGETDPLQIA+KEL RKIP+IIRRYLPD SYEDW
Sbjct: 83 KYERARILGTRALQISMNAPVLVDIEGETDPLQIALKELSQRKIPLIIRRYLPDGSYEDW 142
Query: 143 GIDELKIIDR 152
+DEL IID+
Sbjct: 143 SVDEL-IIDQ 151
>gi|440791589|gb|ELR12827.1| RNA polymerase subunit [Acanthamoeba castellanii str. Neff]
Length = 102
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 61/67 (91%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M AP+MVELEGETDPL+IA KEL+ RKIPIIIRRYLPD S+EDW
Sbjct: 35 KYERARVLGTRALQISMNAPIMVELEGETDPLEIAQKELRERKIPIIIRRYLPDGSFEDW 94
Query: 143 GIDELKI 149
IDEL +
Sbjct: 95 SIDELVV 101
>gi|224001376|ref|XP_002290360.1| dna-directed RNA polymerase i [Thalassiosira pseudonana CCMP1335]
gi|220973782|gb|EED92112.1| dna-directed RNA polymerase i, partial [Thalassiosira pseudonana
CCMP1335]
Length = 76
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/69 (81%), Positives = 64/69 (92%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APVMV+LEGETDPL+IA KEL+ RKIPI+IRRYLPD S+EDW
Sbjct: 9 KYERARVLGTRALQISMNAPVMVDLEGETDPLKIAQKELRERKIPIVIRRYLPDGSHEDW 68
Query: 143 GIDELKIID 151
GIDEL I+D
Sbjct: 69 GIDEL-IVD 76
>gi|388514055|gb|AFK45089.1| unknown [Lotus japonicus]
Length = 80
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/69 (78%), Positives = 61/69 (88%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APVMVEL GETDPL+IAMKEL+ RKIP IRRYLPD SYEDW
Sbjct: 3 KYERARILGTRALQISMNAPVMVELAGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDW 62
Query: 143 GIDELKIID 151
G+DEL + D
Sbjct: 63 GVDELIVED 71
>gi|344232897|gb|EGV64770.1| subunit common to RNA polymerases I, II, and [Candida tenuis ATCC
10573]
Length = 154
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 63/69 (91%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI++ APV+V++EGETDPLQIAMKEL RKIP++IRRYLPD SYEDW
Sbjct: 86 KYERARVLGTRALQISLNAPVLVDIEGETDPLQIAMKELSQRKIPLVIRRYLPDGSYEDW 145
Query: 143 GIDELKIID 151
G DEL IID
Sbjct: 146 GCDEL-IID 153
>gi|241955777|ref|XP_002420609.1| RNA polymerase subunit common to RNA polymerases I, II, and III,
putative [Candida dubliniensis CD36]
gi|223643951|emb|CAX41691.1| RNA polymerase subunit common to RNA polymerases I, II, and III,
putative [Candida dubliniensis CD36]
Length = 157
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 64/71 (90%), Gaps = 1/71 (1%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERAR+LGTRALQI++ APV+V++EGETDPLQIAMKEL RKIP++IRRYLPD SYED
Sbjct: 88 TKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKIPLVIRRYLPDGSYED 147
Query: 142 WGIDELKIIDR 152
WG DEL I+D+
Sbjct: 148 WGCDEL-IVDQ 157
>gi|255726938|ref|XP_002548395.1| DNA-directed RNA polymerases I [Candida tropicalis MYA-3404]
gi|240134319|gb|EER33874.1| DNA-directed RNA polymerases I [Candida tropicalis MYA-3404]
Length = 213
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 64/70 (91%), Gaps = 1/70 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI++ APV+V++EGETDPLQIAMKEL RKIP++IRRYLPD SYEDW
Sbjct: 145 KYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKIPLVIRRYLPDGSYEDW 204
Query: 143 GIDELKIIDR 152
G DEL I+D+
Sbjct: 205 GCDEL-IVDQ 213
>gi|344301857|gb|EGW32162.1| hypothetical protein SPAPADRAFT_61250 [Spathaspora passalidarum
NRRL Y-27907]
Length = 161
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/71 (73%), Positives = 64/71 (90%), Gaps = 1/71 (1%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERAR+LGTRALQI++ APV+V++EGETDPLQIAMKEL RK+P++IRRYLPD SYED
Sbjct: 92 TKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKVPLVIRRYLPDGSYED 151
Query: 142 WGIDELKIIDR 152
WG DEL I+D+
Sbjct: 152 WGCDEL-IVDQ 161
>gi|68488173|ref|XP_712047.1| potential subunit common to RNA polymerase I, II and III [Candida
albicans SC5314]
gi|68488216|ref|XP_712026.1| potential subunit common to RNA polymerase I, II and III [Candida
albicans SC5314]
gi|46433385|gb|EAK92827.1| potential subunit common to RNA polymerase I, II and III [Candida
albicans SC5314]
gi|46433408|gb|EAK92849.1| potential subunit common to RNA polymerase I, II and III [Candida
albicans SC5314]
gi|238882727|gb|EEQ46365.1| DNA-directed RNA polymerases I [Candida albicans WO-1]
Length = 157
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 64/71 (90%), Gaps = 1/71 (1%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERAR+LGTRALQI++ APV+V++EGETDPLQIAMKEL RKIP++IRRYLPD SYED
Sbjct: 88 TKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKIPLVIRRYLPDGSYED 147
Query: 142 WGIDELKIIDR 152
WG DEL I+D+
Sbjct: 148 WGCDEL-IVDQ 157
>gi|391331311|ref|XP_003740093.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Metaseiulus occidentalis]
Length = 126
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 59/65 (90%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAM APVMVELEGETDPL+IA KELK RKIPI IRRYLPD S+E W
Sbjct: 57 KYERARVLGTRALQIAMGAPVMVELEGETDPLEIAKKELKVRKIPIKIRRYLPDGSFEVW 116
Query: 143 GIDEL 147
G+DEL
Sbjct: 117 GVDEL 121
>gi|290987692|ref|XP_002676556.1| predicted protein [Naegleria gruberi]
gi|284090159|gb|EFC43812.1| predicted protein [Naegleria gruberi]
Length = 130
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 68/88 (77%)
Query: 62 YMKVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKEL 121
Y+ V K + K K ++E+ARVLGTRALQI+M APV VEL+GETDPLQIA KEL
Sbjct: 40 YLPVDKNKVPKEDRKTTRKMTKFEKARVLGTRALQISMNAPVTVELQGETDPLQIAKKEL 99
Query: 122 KARKIPIIIRRYLPDNSYEDWGIDELKI 149
+ +KIP+IIRRYLPD SYEDW ++EL+I
Sbjct: 100 QQKKIPMIIRRYLPDKSYEDWHVNELEI 127
>gi|325183314|emb|CCA17772.1| DNAdirected RNA polymerase I putative [Albugo laibachii Nc14]
Length = 134
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 62/67 (92%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
++ERARVLGTRALQI+M APVMV++EGETDPL+IA+KEL+ RKIPIIIRRYLPD S+EDW
Sbjct: 67 KFERARVLGTRALQISMNAPVMVDIEGETDPLKIALKELRDRKIPIIIRRYLPDGSFEDW 126
Query: 143 GIDELKI 149
IDEL I
Sbjct: 127 SIDELII 133
>gi|448522466|ref|XP_003868694.1| Rpo26 RNA polymerase subunit [Candida orthopsilosis Co 90-125]
gi|380353034|emb|CCG25790.1| Rpo26 RNA polymerase subunit [Candida orthopsilosis]
Length = 158
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 64/70 (91%), Gaps = 1/70 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI++ APV+V++EGETDPLQIAMKEL RKIP++IRRYLPD SYEDW
Sbjct: 90 KYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELSQRKIPLVIRRYLPDGSYEDW 149
Query: 143 GIDELKIIDR 152
G DEL I+D+
Sbjct: 150 GCDEL-IVDQ 158
>gi|354547934|emb|CCE44669.1| hypothetical protein CPAR2_404730 [Candida parapsilosis]
Length = 162
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 64/70 (91%), Gaps = 1/70 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI++ APV+V++EGETDPLQIAMKEL RKIP++IRRYLPD SYEDW
Sbjct: 94 KYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELSQRKIPLVIRRYLPDGSYEDW 153
Query: 143 GIDELKIIDR 152
G DEL I+D+
Sbjct: 154 GCDEL-IVDQ 162
>gi|149237865|ref|XP_001524809.1| DNA-directed RNA polymerases I [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451406|gb|EDK45662.1| DNA-directed RNA polymerases I [Lodderomyces elongisporus NRRL
YB-4239]
Length = 165
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 63/70 (90%), Gaps = 1/70 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI++ APV+V++EGETDPLQIAMKEL RKIP++IRRYLPD SYEDW
Sbjct: 97 KYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKIPLVIRRYLPDGSYEDW 156
Query: 143 GIDELKIIDR 152
G DEL I+D
Sbjct: 157 GCDEL-IVDH 165
>gi|50422341|ref|XP_459733.1| DEHA2E09812p [Debaryomyces hansenii CBS767]
gi|49655401|emb|CAG87969.1| DEHA2E09812p [Debaryomyces hansenii CBS767]
Length = 158
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 63/70 (90%), Gaps = 1/70 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI++ APV+V++EGETDPLQIAMKEL RKIP+++RRYLPD S+EDW
Sbjct: 90 KYERARVLGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKIPLVVRRYLPDGSFEDW 149
Query: 143 GIDELKIIDR 152
G DEL IID
Sbjct: 150 GCDEL-IIDH 158
>gi|146412868|ref|XP_001482405.1| hypothetical protein PGUG_05425 [Meyerozyma guilliermondii ATCC
6260]
gi|146393169|gb|EDK41327.1| hypothetical protein PGUG_05425 [Meyerozyma guilliermondii ATCC
6260]
Length = 158
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 63/71 (88%), Gaps = 1/71 (1%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERAR+LGTRALQI++ APV+V++EGETDPLQIAMKEL RK+P+++RRYLPD SYED
Sbjct: 89 TKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELTQRKVPLVVRRYLPDGSYED 148
Query: 142 WGIDELKIIDR 152
WG DEL I+D
Sbjct: 149 WGCDEL-IVDH 158
>gi|219111697|ref|XP_002177600.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410485|gb|EEC50414.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 129
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/67 (77%), Positives = 61/67 (91%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APVMV+L+GETDPL+IA KEL+ RKIPIIIRRYLPD S+EDW
Sbjct: 62 KYERARVLGTRALQISMNAPVMVDLDGETDPLRIAEKELRERKIPIIIRRYLPDGSHEDW 121
Query: 143 GIDELKI 149
+DEL +
Sbjct: 122 SVDELVV 128
>gi|406603005|emb|CCH45473.1| DNA-directed RNA polymerase [Wickerhamomyces ciferrii]
Length = 139
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 62/69 (89%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL KIP++IRRYLPD SYEDW
Sbjct: 69 KYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELSQNKIPLVIRRYLPDGSYEDW 128
Query: 143 GIDELKIID 151
G DEL I+D
Sbjct: 129 GCDEL-IVD 136
>gi|196014319|ref|XP_002117019.1| hypothetical protein TRIADDRAFT_50973 [Trichoplax adhaerens]
gi|190580510|gb|EDV20593.1| hypothetical protein TRIADDRAFT_50973 [Trichoplax adhaerens]
Length = 95
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 63/70 (90%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APVMVELEGETDPLQIA+KELKA KIP+I+RR+LPD SYEDW
Sbjct: 26 KYERARILGTRALQISMNAPVMVELEGETDPLQIALKELKANKIPMIVRRFLPDGSYEDW 85
Query: 143 GIDELKIIDR 152
+EL + ++
Sbjct: 86 SCNELIVSEK 95
>gi|19075456|ref|NP_587956.1| DNA-directed RNA polymerase I, II and III subunit Rpb6
[Schizosaccharomyces pombe 972h-]
gi|548818|sp|P36595.1|RPAB2_SCHPO RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerases I, II,
and III 15 kDa polypeptide; AltName: Full=RPC16
gi|256599720|pdb|3H0G|F Chain F, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599732|pdb|3H0G|R Chain R, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|173472|gb|AAA52084.1| RNA polymerase small common phosphorylated subunit
[Schizosaccharomyces pombe]
gi|409477|gb|AAB04116.1| RNA polymerase [Schizosaccharomyces pombe]
gi|3130047|emb|CAA18992.1| DNA-directed RNA polymerase I, II and III subunit Rpb6
[Schizosaccharomyces pombe]
Length = 142
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 69/101 (68%), Gaps = 4/101 (3%)
Query: 51 GERALVLILNHYMKVKS----KNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVE 106
GE + +I K+ K K + +YERAR+LGTRALQI+M APV+V+
Sbjct: 41 GEPSTTVITEDVASSKTAQSGKAVAKEDRTTTPYMTKYERARILGTRALQISMNAPVLVD 100
Query: 107 LEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDEL 147
LEGETDPLQIAMKEL +KIP+++RRYLPD SYEDW + EL
Sbjct: 101 LEGETDPLQIAMKELAQKKIPLLVRRYLPDGSYEDWSVAEL 141
>gi|384250139|gb|EIE23619.1| RNA polymerase Rpb6 [Coccomyxa subellipsoidea C-169]
Length = 133
Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 61/70 (87%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APVMVEL GE+DPL+IAMKEL+ +KIP I+RRYLPD SYEDW
Sbjct: 64 KYERARILGTRALQISMNAPVMVELNGESDPLEIAMKELREKKIPFIVRRYLPDGSYEDW 123
Query: 143 GIDELKIIDR 152
I+EL DR
Sbjct: 124 TIEELIQSDR 133
>gi|400602757|gb|EJP70359.1| RNA polymerase Rpb6 [Beauveria bassiana ARSEF 2860]
Length = 659
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRYLPD YEDW
Sbjct: 86 KYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYLPDGYYEDW 145
Query: 143 GIDEL 147
+EL
Sbjct: 146 TCEEL 150
>gi|367003129|ref|XP_003686298.1| hypothetical protein TPHA_0G00260 [Tetrapisispora phaffii CBS 4417]
gi|357524599|emb|CCE63864.1| hypothetical protein TPHA_0G00260 [Tetrapisispora phaffii CBS 4417]
Length = 159
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 62/69 (89%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLPD S+EDW
Sbjct: 91 KYERARILGTRALQISMNAPVFVDLEGETDPLKIAMKELSEKKIPLVIRRYLPDGSFEDW 150
Query: 143 GIDELKIID 151
++EL I+D
Sbjct: 151 SVEEL-IVD 158
>gi|365990642|ref|XP_003672150.1| hypothetical protein NDAI_0J00150 [Naumovozyma dairenensis CBS 421]
gi|343770925|emb|CCD26907.1| hypothetical protein NDAI_0J00150 [Naumovozyma dairenensis CBS 421]
Length = 162
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 62/70 (88%), Gaps = 1/70 (1%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLPD S+ED
Sbjct: 93 TKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFED 152
Query: 142 WGIDELKIID 151
W ++EL I+D
Sbjct: 153 WSVEEL-IVD 161
>gi|50288735|ref|XP_446797.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526105|emb|CAG59724.1| unnamed protein product [Candida glabrata]
Length = 159
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 82/129 (63%), Gaps = 5/129 (3%)
Query: 27 DENAPTPSKANKWMGD---LNLILGIKGERALVLILNHYMK-VKSKNQIKNNNKLNIKQI 82
++N T + + M D ++ G G + H K +K K K +
Sbjct: 30 EDNVKTEANGGEQMKDEEGRTIVTGGMGPEDYKNVETHRRKTLKEKAIPKEDRTTTPYMT 89
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLPD S+EDW
Sbjct: 90 KYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDW 149
Query: 143 GIDELKIID 151
++EL ++D
Sbjct: 150 SVEEL-VVD 157
>gi|410075760|ref|XP_003955462.1| hypothetical protein KAFR_0B00270 [Kazachstania africana CBS 2517]
gi|372462045|emb|CCF56327.1| hypothetical protein KAFR_0B00270 [Kazachstania africana CBS 2517]
Length = 166
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 62/69 (89%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLPD S+EDW
Sbjct: 98 KYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDW 157
Query: 143 GIDELKIID 151
++EL I+D
Sbjct: 158 SVEEL-IVD 165
>gi|71020411|ref|XP_760436.1| hypothetical protein UM04289.1 [Ustilago maydis 521]
gi|46100105|gb|EAK85338.1| hypothetical protein UM04289.1 [Ustilago maydis 521]
Length = 215
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 60/69 (86%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V EGETDPL+IAMKEL A+KIP+++RRYLPD SYEDW
Sbjct: 70 KYERARILGTRALQISMNAPVLVPTEGETDPLEIAMKELAAKKIPLVVRRYLPDGSYEDW 129
Query: 143 GIDELKIID 151
+ EL + D
Sbjct: 130 TVSELIVSD 138
>gi|213409217|ref|XP_002175379.1| DNA-directed RNA polymerase I, II and III subunit Rpb6
[Schizosaccharomyces japonicus yFS275]
gi|212003426|gb|EEB09086.1| DNA-directed RNA polymerase I, II and III subunit Rpb6
[Schizosaccharomyces japonicus yFS275]
Length = 145
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 59/65 (90%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V+LEGETDPLQIAMKEL +KIP+++RRYLPD SYEDW
Sbjct: 80 KYERARILGTRALQISMNAPVLVDLEGETDPLQIAMKELAQKKIPLLVRRYLPDGSYEDW 139
Query: 143 GIDEL 147
+ EL
Sbjct: 140 SVSEL 144
>gi|255710415|ref|XP_002551491.1| KLTH0A00660p [Lachancea thermotolerans]
gi|238932868|emb|CAR21049.1| KLTH0A00660p [Lachancea thermotolerans CBS 6340]
Length = 155
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 68/92 (73%), Gaps = 1/92 (1%)
Query: 60 NHYMKVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMK 119
N +K K K+ +YERAR+LGTRALQI+M APV V+LEGETDPL+IAMK
Sbjct: 64 NRKRTLKEKAIPKDERTTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMK 123
Query: 120 ELKARKIPIIIRRYLPDNSYEDWGIDELKIID 151
EL +KIP++IRRYLPD S+EDW ++EL I+D
Sbjct: 124 ELAEKKIPLVIRRYLPDGSFEDWSVEEL-IVD 154
>gi|366989393|ref|XP_003674464.1| hypothetical protein NCAS_0A15280 [Naumovozyma castellii CBS 4309]
gi|342300327|emb|CCC68086.1| hypothetical protein NCAS_0A15280 [Naumovozyma castellii CBS 4309]
Length = 157
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 62/69 (89%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLPD S+EDW
Sbjct: 89 KYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDW 148
Query: 143 GIDELKIID 151
++EL I+D
Sbjct: 149 SVEEL-IVD 156
>gi|302847622|ref|XP_002955345.1| hypothetical protein VOLCADRAFT_106747 [Volvox carteri f.
nagariensis]
gi|300259417|gb|EFJ43645.1| hypothetical protein VOLCADRAFT_106747 [Volvox carteri f.
nagariensis]
Length = 132
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/69 (73%), Positives = 59/69 (85%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YE+ARVLGTRALQI+M APVMVEL GETDPL+IAMKEL+ +K+P IRRYLPD SYEDW
Sbjct: 64 KYEKARVLGTRALQISMNAPVMVELSGETDPLEIAMKELREKKVPFTIRRYLPDGSYEDW 123
Query: 143 GIDELKIID 151
I EL + D
Sbjct: 124 SISELVVPD 132
>gi|156848452|ref|XP_001647108.1| hypothetical protein Kpol_1050p110 [Vanderwaltozyma polyspora DSM
70294]
gi|156117791|gb|EDO19250.1| hypothetical protein Kpol_1050p110 [Vanderwaltozyma polyspora DSM
70294]
Length = 153
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 62/76 (81%)
Query: 72 KNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIR 131
KN+ +YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IR
Sbjct: 74 KNDRTTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIR 133
Query: 132 RYLPDNSYEDWGIDEL 147
RYLPD S+EDW ++EL
Sbjct: 134 RYLPDGSFEDWSVEEL 149
>gi|330793050|ref|XP_003284599.1| hypothetical protein DICPUDRAFT_148388 [Dictyostelium purpureum]
gi|325085513|gb|EGC38919.1| hypothetical protein DICPUDRAFT_148388 [Dictyostelium purpureum]
Length = 129
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/67 (76%), Positives = 61/67 (91%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LG+RALQI+M AP+MVELEGETDPLQIA KEL+A+KIP+IIRRYLP+ YEDW
Sbjct: 63 KYERARLLGSRALQISMNAPIMVELEGETDPLQIAWKELRAKKIPLIIRRYLPNGMYEDW 122
Query: 143 GIDELKI 149
+DEL I
Sbjct: 123 SVDELSI 129
>gi|254580974|ref|XP_002496472.1| ZYRO0D00880p [Zygosaccharomyces rouxii]
gi|238939364|emb|CAR27539.1| ZYRO0D00880p [Zygosaccharomyces rouxii]
Length = 165
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 44 NLILGIKGERALVLILNHYMKVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPV 103
N++ G N +K K K+ +YERAR+LGTRALQI+M APV
Sbjct: 58 NIVASNMGGEEFTSEQNRRKTLKEKAIPKDERTTTPYMTKYERARILGTRALQISMNAPV 117
Query: 104 MVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 151
V+LEGETDPL+IAMKEL +KIP++IRRY+PD S+EDW ++EL I+D
Sbjct: 118 FVDLEGETDPLRIAMKELAEKKIPLVIRRYMPDGSFEDWSVEEL-IVD 164
>gi|6325445|ref|NP_015513.1| Rpo26p [Saccharomyces cerevisiae S288c]
gi|133339|sp|P20435.1|RPAB2_YEAST RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=ABC23; AltName: Full=DNA-directed
RNA polymerases I, II, and III 23 kDa polypeptide
gi|14278328|pdb|1I3Q|F Chain F, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278339|pdb|1I50|F Chain F, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278369|pdb|1I6H|F Chain F, Rna Polymerase Ii Elongation Complex
gi|20150717|pdb|1K83|F Chain F, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749621|pdb|1NIK|F Chain F, Wild Type Rna Polymerase Ii
gi|30749742|pdb|1NT9|F Chain F, Complete 12-Subunit Rna Polymerase Ii
gi|34810558|pdb|1PQV|F Chain F, Rna Polymerase Ii-Tfiis Complex
gi|46015419|pdb|1R5U|F Chain F, Rna Polymerase Ii Tfiib Complex
gi|46015784|pdb|1SFO|F Chain F, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965915|pdb|1R9S|F Chain F, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965927|pdb|1R9T|F Chain F, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966111|pdb|1TWA|F Chain F, Rna Polymerase Ii Complexed With Atp
gi|56966125|pdb|1TWC|F Chain F, Rna Polymerase Ii Complexed With Gtp
gi|56966135|pdb|1TWF|F Chain F, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966145|pdb|1TWG|F Chain F, Rna Polymerase Ii Complexed With Ctp
gi|56966155|pdb|1TWH|F Chain F, Rna Polymerase Ii Complexed With 2'datp
gi|58177169|pdb|1WCM|F Chain F, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679449|pdb|1Y1W|F Chain F, Complete Rna Polymerase Ii Elongation Complex
gi|61679466|pdb|1Y77|F Chain F, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679507|pdb|1Y1V|F Chain F, Refined Rna Polymerase Ii-tfiis Complex
gi|61679520|pdb|1Y1Y|F Chain F, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754248|pdb|2B63|F Chain F, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590859|pdb|2B8K|F Chain F, 12-Subunit Rna Polymerase Ii
gi|122920065|pdb|2E2H|F Chain F, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920080|pdb|2E2I|F Chain F, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920095|pdb|2E2J|F Chain F, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921034|pdb|2NVQ|F Chain F, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921070|pdb|2NVT|F Chain F, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921086|pdb|2NVX|F Chain F, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921101|pdb|2NVY|F Chain F, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921113|pdb|2NVZ|F Chain F, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104679|pdb|2JA5|F Chain F, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104694|pdb|2JA6|F Chain F, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104715|pdb|2JA7|F Chain F, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104727|pdb|2JA7|R Chain R, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104739|pdb|2JA8|F Chain F, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387188|pdb|2YU9|F Chain F, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877778|pdb|2R7Z|F Chain F, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172232|pdb|2R92|F Chain F, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172245|pdb|2R93|F Chain F, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613467|pdb|2VUM|F Chain F, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368738|pdb|3CQZ|F Chain F, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983595|pdb|3FKI|F Chain F, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781920|pdb|3GTG|F Chain F, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781933|pdb|3GTJ|F Chain F, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781946|pdb|3GTK|F Chain F, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781959|pdb|3GTL|F Chain F, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781972|pdb|3GTM|F Chain F, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781986|pdb|3GTO|F Chain F, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781999|pdb|3GTP|F Chain F, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782012|pdb|3GTQ|F Chain F, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104516|pdb|3H3V|G Chain G, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839446|pdb|3HOU|F Chain F, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839461|pdb|3HOU|R Chain R, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839476|pdb|3HOV|F Chain F, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839491|pdb|3HOW|F Chain F, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839506|pdb|3HOX|F Chain F, Complete Rna Polymerase Ii Elongation Complex V
gi|254839521|pdb|3HOY|F Chain F, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839536|pdb|3HOZ|F Chain F, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471951|pdb|3I4M|F Chain F, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471966|pdb|3I4N|F Chain F, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618770|pdb|3K1F|F Chain F, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914556|pdb|3K7A|F Chain F, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982479|pdb|3M3Y|F Chain F, Rna Polymerase Ii Elongation Complex C
gi|295982492|pdb|3M4O|F Chain F, Rna Polymerase Ii Elongation Complex B
gi|325053968|pdb|3PO2|F Chain F, Arrested Rna Polymerase Ii Elongation Complex
gi|325053983|pdb|3PO3|F Chain F, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634543|pdb|3QT1|F Chain F, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197460|pdb|3RZD|F Chain F, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197472|pdb|3RZO|F Chain F, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197484|pdb|3S14|F Chain F, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197496|pdb|3S15|F Chain F, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197508|pdb|3S16|F Chain F, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197520|pdb|3S17|F Chain F, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197532|pdb|3S1M|F Chain F, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197544|pdb|3S1N|F Chain F, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197556|pdb|3S1Q|F Chain F, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197568|pdb|3S1R|F Chain F, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197580|pdb|3S2D|F Chain F, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781201|pdb|3S2H|F Chain F, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|357380841|pdb|4A3C|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546295|pdb|4A3B|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546313|pdb|4A3D|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546330|pdb|4A3E|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546347|pdb|4A3F|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546364|pdb|4A3J|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546381|pdb|4A3K|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546397|pdb|4A3L|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546414|pdb|4A3M|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977884|pdb|4A3G|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977899|pdb|4A3I|F Chain F, Rna Polymerase Ii Binary Complex With Dna
gi|380764984|pdb|4A93|F Chain F, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145451|pdb|4BBR|F Chain F, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145464|pdb|4BBS|F Chain F, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|172453|gb|AAA34989.1| RNA polymerase II sixth subunit (RP026) [Saccharomyces cerevisiae]
gi|287824|emb|CAA37382.1| RNA polymerase, RPB6 subunit [Saccharomyces cerevisiae]
gi|786304|gb|AAB64616.1| 23 kD polypeptide of RNA Polymerases I, II, and III (Swiss Prot.
accession number P20435) [Saccharomyces cerevisiae]
gi|151942957|gb|EDN61303.1| ABC23 [Saccharomyces cerevisiae YJM789]
gi|190408109|gb|EDV11374.1| RNA polymerases I [Saccharomyces cerevisiae RM11-1a]
gi|259150344|emb|CAY87147.1| Rpo26p [Saccharomyces cerevisiae EC1118]
gi|285815711|tpg|DAA11603.1| TPA: Rpo26p [Saccharomyces cerevisiae S288c]
gi|392296190|gb|EIW07293.1| Rpo26p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 155
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 62/69 (89%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLPD S+EDW
Sbjct: 87 KYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDW 146
Query: 143 GIDELKIID 151
++EL I+D
Sbjct: 147 SVEEL-IVD 154
>gi|50303495|ref|XP_451689.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640821|emb|CAH02082.1| KLLA0B03476p [Kluyveromyces lactis]
Length = 158
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 65 VKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKAR 124
+K K K + +YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +
Sbjct: 72 LKEKAIAKEDRTTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEK 131
Query: 125 KIPIIIRRYLPDNSYEDWGIDELKIID 151
KIP++IRRYLPD S+EDW ++EL I+D
Sbjct: 132 KIPLVIRRYLPDGSFEDWSVEEL-IVD 157
>gi|349581984|dbj|GAA27141.1| K7_Rpo26p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 155
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 62/69 (89%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLPD S+EDW
Sbjct: 87 KYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDW 146
Query: 143 GIDELKIID 151
++EL I+D
Sbjct: 147 SVEEL-IVD 154
>gi|444316388|ref|XP_004178851.1| hypothetical protein TBLA_0B04970 [Tetrapisispora blattae CBS 6284]
gi|387511891|emb|CCH59332.1| hypothetical protein TBLA_0B04970 [Tetrapisispora blattae CBS 6284]
Length = 160
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 62/69 (89%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLPD S+EDW
Sbjct: 92 KYERARILGTRALQISMNAPVFVDLEGETDPLKIAMKELAEKKIPLVIRRYLPDGSFEDW 151
Query: 143 GIDELKIID 151
++EL I+D
Sbjct: 152 SVEEL-IVD 159
>gi|401887349|gb|EJT51339.1| DNA-directed RNA polymerases I, II, and III polypeptide
[Trichosporon asahii var. asahii CBS 2479]
gi|406696322|gb|EKC99613.1| DNA-directed RNA polymerases I, II, and III polypeptide
[Trichosporon asahii var. asahii CBS 8904]
Length = 136
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 61/65 (93%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APV+V +EGETDPL+IA+KEL A+KIP++IRRYLPDNS+EDW
Sbjct: 68 KYERARVLGTRALQISMNAPVLVPVEGETDPLEIALKELAAKKIPLVIRRYLPDNSFEDW 127
Query: 143 GIDEL 147
++EL
Sbjct: 128 KVEEL 132
>gi|367017198|ref|XP_003683097.1| hypothetical protein TDEL_0H00270 [Torulaspora delbrueckii]
gi|359750761|emb|CCE93886.1| hypothetical protein TDEL_0H00270 [Torulaspora delbrueckii]
Length = 159
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 62/69 (89%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLPD S+EDW
Sbjct: 91 KYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDW 150
Query: 143 GIDELKIID 151
++EL I+D
Sbjct: 151 SVEEL-IVD 158
>gi|45190327|ref|NP_984581.1| AEL279Cp [Ashbya gossypii ATCC 10895]
gi|44983223|gb|AAS52405.1| AEL279Cp [Ashbya gossypii ATCC 10895]
gi|374107796|gb|AEY96703.1| FAEL279Cp [Ashbya gossypii FDAG1]
Length = 154
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 62/69 (89%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV V+LEGETDP++IAMKEL +KIP++IRRYLPD S+EDW
Sbjct: 86 KYERARILGTRALQISMNAPVFVDLEGETDPMRIAMKELAEKKIPLVIRRYLPDGSFEDW 145
Query: 143 GIDELKIID 151
++EL I+D
Sbjct: 146 SVEEL-IVD 153
>gi|281209893|gb|EFA84061.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 133
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/67 (73%), Positives = 62/67 (92%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LG+RALQI+M AP+MVELEGETDPLQIA KEL+A+KIP+IIRR+LP+ +YEDW
Sbjct: 65 KYERARLLGSRALQISMNAPIMVELEGETDPLQIAWKELRAKKIPLIIRRFLPNGAYEDW 124
Query: 143 GIDELKI 149
+DEL +
Sbjct: 125 SVDELVV 131
>gi|121702763|ref|XP_001269646.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus clavatus NRRL 1]
gi|119397789|gb|EAW08220.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus clavatus NRRL 1]
Length = 161
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 75/114 (65%), Gaps = 7/114 (6%)
Query: 41 GDLNLILGIKGERALVL---ILNHYMKVKSKNQIK----NNNKLNIKQIRYERARVLGTR 93
GD + + G+R +V + KV + + K K +YERARVLGTR
Sbjct: 47 GDDSYAPAVNGDRVVVSGDPSAGYSGKVVEQARAKKIPNEERKTTPYMTKYERARVLGTR 106
Query: 94 ALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDEL 147
ALQI+M APV+V+LEGETDPLQIAMKEL +KIP+I+RRYLPD +YEDW +EL
Sbjct: 107 ALQISMNAPVLVDLEGETDPLQIAMKELNQKKIPLIVRRYLPDGTYEDWTCEEL 160
>gi|66803172|ref|XP_635429.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|74851598|sp|Q54FA8.1|RPAB2_DICDI RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
rpabc2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerase II
subunit F; AltName: Full=RPB6 homolog
gi|60463771|gb|EAL61949.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 133
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/67 (74%), Positives = 61/67 (91%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LG+RALQI+M AP+MVELEGETDPLQIA KEL+A+KIP+IIRR+LP+ YEDW
Sbjct: 67 KYERARLLGSRALQISMNAPIMVELEGETDPLQIAWKELRAKKIPLIIRRFLPNGMYEDW 126
Query: 143 GIDELKI 149
+DEL I
Sbjct: 127 SVDELSI 133
>gi|145343764|ref|XP_001416481.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576706|gb|ABO94774.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 81
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 60/65 (92%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V+LEGETDPL+IA KEL+ +++P ++RRY+PD SYEDW
Sbjct: 15 KYERARILGTRALQISMNAPVLVQLEGETDPLEIAGKELREKRVPFVVRRYMPDGSYEDW 74
Query: 143 GIDEL 147
GIDEL
Sbjct: 75 GIDEL 79
>gi|331223153|ref|XP_003324249.1| DNA-directed RNA Polymerase II subunit F [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309303239|gb|EFP79830.1| DNA-directed RNA Polymerase II subunit F [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 153
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 58/66 (87%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERAR+LGTRALQI+M APV+V L+GE+DPL+IAMKEL RKIP+I+RRYLPD SYED
Sbjct: 85 TKYERARILGTRALQISMNAPVLVPLDGESDPLEIAMKELSQRKIPLIVRRYLPDGSYED 144
Query: 142 WGIDEL 147
W + EL
Sbjct: 145 WSVSEL 150
>gi|340518299|gb|EGR48540.1| predicted protein [Trichoderma reesei QM6a]
Length = 151
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 76/126 (60%)
Query: 22 FTLLLDENAPTPSKANKWMGDLNLILGIKGERALVLILNHYMKVKSKNQIKNNNKLNIKQ 81
T + P A GD + I G+ + + VK+K +
Sbjct: 24 ITEFYEPEVPEDEDAEHLNGDDQDNVVISGDPSAAANASKDKSVKNKKIPDDQRTTTPYM 83
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+PD YED
Sbjct: 84 TKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPDGYYED 143
Query: 142 WGIDEL 147
W +EL
Sbjct: 144 WTCEEL 149
>gi|343425318|emb|CBQ68854.1| probable Rpo26-18kD subunit of DNA-directed RNA polymerases I, II,
III [Sporisorium reilianum SRZ2]
Length = 138
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 58/65 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V EGETDPL+IAMKEL A+KIP+++RRYLPD SYEDW
Sbjct: 70 KYERARILGTRALQISMNAPVLVPTEGETDPLEIAMKELSAKKIPLVVRRYLPDGSYEDW 129
Query: 143 GIDEL 147
+ EL
Sbjct: 130 TVSEL 134
>gi|388855621|emb|CCF50844.1| probable Rpo26-18kD subunit of DNA-directed RNA polymerases I, II,
III [Ustilago hordei]
Length = 138
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 58/66 (87%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERAR+LGTRALQI+M APV+V EGETDPL+IAMKEL A+KIP+++RRYLPD SYED
Sbjct: 69 TKYERARILGTRALQISMNAPVLVPTEGETDPLEIAMKELAAKKIPLVVRRYLPDGSYED 128
Query: 142 WGIDEL 147
W + EL
Sbjct: 129 WTVSEL 134
>gi|50555217|ref|XP_505017.1| YALI0F05082p [Yarrowia lipolytica]
gi|49650887|emb|CAG77824.1| YALI0F05082p [Yarrowia lipolytica CLIB122]
Length = 152
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 63/70 (90%), Gaps = 1/70 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M AP++V++E TDPLQIAMKEL+ +KIP++IRRYLPD S+EDW
Sbjct: 84 KYERARVLGTRALQISMNAPILVDIENATDPLQIAMKELQQKKIPLVIRRYLPDGSFEDW 143
Query: 143 GIDELKIIDR 152
G DEL I+D+
Sbjct: 144 GCDEL-IVDQ 152
>gi|452820688|gb|EME27727.1| DNA-directed RNA Polymerase II subunit F [Galdieria sulphuraria]
Length = 144
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERA++LGTRALQI++ APVMV+LEGETDPL+IA KEL+ RKIPI IRRYLPD ++EDW
Sbjct: 78 KYERAKILGTRALQISLGAPVMVDLEGETDPLEIAQKELRERKIPITIRRYLPDGTFEDW 137
Query: 143 GIDEL 147
+DEL
Sbjct: 138 NVDEL 142
>gi|363750227|ref|XP_003645331.1| hypothetical protein Ecym_2818 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888964|gb|AET38514.1| Hypothetical protein Ecym_2818 [Eremothecium cymbalariae
DBVPG#7215]
Length = 154
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 62/69 (89%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV V+LEGETDP++IAMKEL +KIP+++RRYLPD S+EDW
Sbjct: 86 KYERARILGTRALQISMNAPVFVDLEGETDPMRIAMKELAEKKIPLVVRRYLPDGSFEDW 145
Query: 143 GIDELKIID 151
++EL I+D
Sbjct: 146 SVEEL-ILD 153
>gi|353251638|pdb|3J0K|F Chain F, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 84
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 62/69 (89%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLPD S+EDW
Sbjct: 16 KYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDW 75
Query: 143 GIDELKIID 151
++EL I+D
Sbjct: 76 SVEEL-IVD 83
>gi|328873121|gb|EGG21488.1| RNA polymerase II core subunit [Dictyostelium fasciculatum]
Length = 125
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 61/65 (93%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LG+RALQI+M AP+MVELEGETDPLQIA KEL+A+KIP+I+RR+LP+ +YEDW
Sbjct: 58 KYERARLLGSRALQISMNAPIMVELEGETDPLQIAWKELRAKKIPLIVRRFLPNGAYEDW 117
Query: 143 GIDEL 147
+DEL
Sbjct: 118 SVDEL 122
>gi|349952239|dbj|GAA35313.1| DNA-directed RNA polymerases I II and III subunit RPABC2
[Clonorchis sinensis]
Length = 136
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/65 (76%), Positives = 58/65 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLG RALQ++M APVMVEL+GE DPL+IA KEL+A KIPIIIRRYLPD S+EDW
Sbjct: 68 KYERARVLGARALQLSMSAPVMVELDGERDPLKIAEKELRANKIPIIIRRYLPDGSFEDW 127
Query: 143 GIDEL 147
+DEL
Sbjct: 128 SLDEL 132
>gi|430813095|emb|CCJ29538.1| unnamed protein product [Pneumocystis jirovecii]
Length = 161
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 59/65 (90%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YE+AR+LGTR+LQI+M APV+V+LEGETDPLQIAMKEL +KIP+++RRYLPD SYEDW
Sbjct: 94 KYEKARILGTRSLQISMNAPVLVDLEGETDPLQIAMKELSQKKIPLLVRRYLPDGSYEDW 153
Query: 143 GIDEL 147
+ EL
Sbjct: 154 AVSEL 158
>gi|255941144|ref|XP_002561341.1| Pc16g10310 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585964|emb|CAP93701.1| Pc16g10310 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 153
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
Query: 63 MKVKSKNQIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKEL 121
M+ + ++ N+ + + +YERARVLGTRALQI+M APV+V+LEGETDPLQIAMKEL
Sbjct: 67 MEQSREKKVPNDQRTTTPYLTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAMKEL 126
Query: 122 KARKIPIIIRRYLPDNSYEDWGIDEL 147
+KIP+IIRRYLPD YEDW +EL
Sbjct: 127 NQKKIPLIIRRYLPDGWYEDWTCEEL 152
>gi|159130739|gb|EDP55852.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus fumigatus A1163]
Length = 161
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 75/114 (65%), Gaps = 7/114 (6%)
Query: 41 GDLNLILGIKGERALVL------ILNHYMKVKSKNQIKNNN-KLNIKQIRYERARVLGTR 93
GD + + G+R +V L ++ +I N K +YERARVLGTR
Sbjct: 47 GDDHYTPAVNGDRIVVSGDPSAGYLGKVVEQARAKKIPNEERKTTPYMTKYERARVLGTR 106
Query: 94 ALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDEL 147
ALQI+M APV+V+LEGETDPLQIA+KEL +KIP+I+RRYLPD +YEDW +EL
Sbjct: 107 ALQISMNAPVLVDLEGETDPLQIAIKELNQKKIPLIVRRYLPDGTYEDWTCEEL 160
>gi|321261974|ref|XP_003195706.1| DNA-directed RNA polymerases I, II and III polypeptide
[Cryptococcus gattii WM276]
gi|317462180|gb|ADV23919.1| DNA-directed RNA polymerases I, II and III polypeptide, putative
[Cryptococcus gattii WM276]
Length = 149
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 61/65 (93%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APV+V +EGE+DPL+IA+KEL A+KIP++IRRYLPDNS+EDW
Sbjct: 81 KYERARVLGTRALQISMNAPVLVPVEGESDPLEIAIKELAAKKIPLVIRRYLPDNSFEDW 140
Query: 143 GIDEL 147
++EL
Sbjct: 141 KVEEL 145
>gi|405122336|gb|AFR97103.1| DNA-directed RNA polymerase I [Cryptococcus neoformans var. grubii
H99]
Length = 148
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 61/65 (93%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APV+V +EGE+DPL+IA+KEL A+KIP++IRRYLPDNS+EDW
Sbjct: 80 KYERARVLGTRALQISMNAPVLVPVEGESDPLEIAIKELAAKKIPLVIRRYLPDNSFEDW 139
Query: 143 GIDEL 147
++EL
Sbjct: 140 KVEEL 144
>gi|58271020|ref|XP_572666.1| DNA-directed RNA polymerases I, II, and III polypeptide
[Cryptococcus neoformans var. neoformans JEC21]
gi|134114830|ref|XP_773713.1| hypothetical protein CNBH1680 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256341|gb|EAL19066.1| hypothetical protein CNBH1680 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228925|gb|AAW45359.1| DNA-directed RNA polymerases I, II, and III polypeptide, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 148
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 61/65 (93%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APV+V +EGE+DPL+IA+KEL A+KIP++IRRYLPDNS+EDW
Sbjct: 80 KYERARVLGTRALQISMNAPVLVPVEGESDPLEIAIKELAAKKIPLVIRRYLPDNSFEDW 139
Query: 143 GIDEL 147
++EL
Sbjct: 140 KVEEL 144
>gi|392578277|gb|EIW71405.1| hypothetical protein TREMEDRAFT_60336 [Tremella mesenterica DSM
1558]
Length = 147
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 60/65 (92%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APV+V +EGETDPL+IA+KEL +KIP++IRRYLPDNS+EDW
Sbjct: 79 KYERARVLGTRALQISMNAPVLVPVEGETDPLEIALKELAQKKIPLVIRRYLPDNSFEDW 138
Query: 143 GIDEL 147
++EL
Sbjct: 139 KVEEL 143
>gi|353244095|emb|CCA75548.1| probable Rpo26-18kD subunit of DNA-directed RNA polymerases I, II,
III [Piriformospora indica DSM 11827]
Length = 164
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 65/85 (76%), Gaps = 3/85 (3%)
Query: 66 KSKNQIKNNNKLNIKQ---IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK 122
+ N+ + NK+ I +YERAR+LGTRALQI+M AP++V EGETDPLQIA+KEL
Sbjct: 77 QQNNEPRKPNKVRITTPYLTKYERARILGTRALQISMNAPILVPAEGETDPLQIAIKELA 136
Query: 123 ARKIPIIIRRYLPDNSYEDWGIDEL 147
RKIP++IRRYLPD S+EDW + EL
Sbjct: 137 QRKIPLVIRRYLPDGSFEDWSVSEL 161
>gi|56759040|gb|AAW27660.1| SJCHGC05009 protein [Schistosoma japonicum]
Length = 135
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 58/65 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLG RALQ++M APVMVEL+GE DPL+IA KEL+A KIPIIIRR+LPD S+EDW
Sbjct: 67 KYERARVLGARALQLSMSAPVMVELDGERDPLKIAEKELRANKIPIIIRRFLPDGSFEDW 126
Query: 143 GIDEL 147
+DEL
Sbjct: 127 SLDEL 131
>gi|339244629|ref|XP_003378240.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Trichinella spiralis]
gi|316972869|gb|EFV56515.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Trichinella spiralis]
Length = 145
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 67/88 (76%), Gaps = 5/88 (5%)
Query: 69 NQIKNNNKLNIK-----QIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKA 123
+I+ + K I+ +YERARVLGTRALQI+M APV+VELE E D L+IA KELKA
Sbjct: 57 TEIEPDRKAKIRITTPYMTKYERARVLGTRALQISMGAPVLVELEDERDALEIARKELKA 116
Query: 124 RKIPIIIRRYLPDNSYEDWGIDELKIID 151
R+IP+++RRY+PD SYEDW +DEL I D
Sbjct: 117 RRIPLVVRRYMPDGSYEDWRVDELIITD 144
>gi|398412102|ref|XP_003857381.1| hypothetical protein MYCGRDRAFT_33005, partial [Zymoseptoria
tritici IPO323]
gi|339477266|gb|EGP92357.1| hypothetical protein MYCGRDRAFT_33005 [Zymoseptoria tritici IPO323]
Length = 108
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 67/97 (69%), Gaps = 3/97 (3%)
Query: 51 GERALVLILNHYMKVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGE 110
GE LV N +KSK +YERARVLGTRALQI+M APV+V++E E
Sbjct: 14 GEPGLV---NAVKTIKSKKIAAEKRTTTPYMTKYERARVLGTRALQISMGAPVLVDVESE 70
Query: 111 TDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDEL 147
TDPLQIA+KEL+ +KIP+++RRYLPD YEDW +EL
Sbjct: 71 TDPLQIALKELREKKIPLVVRRYLPDGFYEDWTCEEL 107
>gi|328852180|gb|EGG01328.1| hypothetical protein MELLADRAFT_53646 [Melampsora larici-populina
98AG31]
Length = 70
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 58/65 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V L+GE+DPL+IAMKEL RKIP+I+RRYLPD SYEDW
Sbjct: 3 KYERARILGTRALQISMNAPVLVPLDGESDPLEIAMKELSQRKIPLIVRRYLPDGSYEDW 62
Query: 143 GIDEL 147
+ EL
Sbjct: 63 SVSEL 67
>gi|403216566|emb|CCK71063.1| hypothetical protein KNAG_0F03990 [Kazachstania naganishii CBS
8797]
Length = 160
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 77/115 (66%), Gaps = 12/115 (10%)
Query: 48 GIKGERALVLILN---------HYMK--VKSKNQIKNNNKLNIKQIRYERARVLGTRALQ 96
G+KGE ++I + H + +K K ++ +YERAR+LGTRALQ
Sbjct: 46 GVKGEDGKMIIASNADGTAVEEHTRRKTLKEKAIPRDERSTTPYMTKYERARILGTRALQ 105
Query: 97 IAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 151
I+M APV V+LEGETDPL+IA KEL +KIP++IRRYLPD S+EDW ++EL I+D
Sbjct: 106 ISMNAPVFVDLEGETDPLKIATKELMEKKIPLVIRRYLPDGSFEDWTVEEL-IVD 159
>gi|407923999|gb|EKG17060.1| RNA polymerase subunit omega/K/RPABC2 [Macrophomina phaseolina MS6]
Length = 160
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 63 MKVKSKNQIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKEL 121
++ +SK ++ ++ + + +YERARVLGTRALQI+M AP +V+LEGETDPLQIA+KEL
Sbjct: 74 VQEQSKKKVPDDQRTTTPYMTKYERARVLGTRALQISMNAPALVDLEGETDPLQIALKEL 133
Query: 122 KARKIPIIIRRYLPDNSYEDWGIDEL 147
+ +KIP+++RRYLPD YEDW +EL
Sbjct: 134 REKKIPLVVRRYLPDGFYEDWTCEEL 159
>gi|119496755|ref|XP_001265151.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Neosartorya fischeri NRRL 181]
gi|119413313|gb|EAW23254.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Neosartorya fischeri NRRL 181]
Length = 161
Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 64/84 (76%)
Query: 64 KVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKA 123
+ ++K K +YERARVLGTRALQI+M APV+V+LEGETDPLQIA+KEL
Sbjct: 77 QARAKKIPNEERKTTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKELNQ 136
Query: 124 RKIPIIIRRYLPDNSYEDWGIDEL 147
+KIP+I+RRYLPD +YEDW +EL
Sbjct: 137 KKIPLIVRRYLPDGTYEDWTCEEL 160
>gi|70990832|ref|XP_750265.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus fumigatus Af293]
gi|66847897|gb|EAL88227.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus fumigatus Af293]
Length = 161
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 75/114 (65%), Gaps = 7/114 (6%)
Query: 41 GDLNLILGIKGERALVL---ILNHYMKVKSKNQIK----NNNKLNIKQIRYERARVLGTR 93
GD + + G+R +V + KV + + K K +YERARVLGTR
Sbjct: 47 GDDHYTPAVNGDRIVVSGDPSAGYSGKVVEQARAKKIPNEERKTTPYMTKYERARVLGTR 106
Query: 94 ALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDEL 147
ALQI+M APV+V+LEGETDPLQIA+KEL +KIP+I+RRYLPD +YEDW +EL
Sbjct: 107 ALQISMNAPVLVDLEGETDPLQIAIKELNQKKIPLIVRRYLPDGTYEDWTCEEL 160
>gi|346327285|gb|EGX96881.1| DNA-directed RNA polymerases I [Cordyceps militaris CM01]
Length = 153
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRYLPD YEDW
Sbjct: 87 KYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYLPDGYYEDW 146
Query: 143 GIDEL 147
+EL
Sbjct: 147 TCEEL 151
>gi|403411425|emb|CCL98125.1| predicted protein [Fibroporia radiculosa]
Length = 170
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 57/66 (86%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERARVLGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRRYLPD S+ED
Sbjct: 102 TKYERARVLGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLPDGSFED 161
Query: 142 WGIDEL 147
W + EL
Sbjct: 162 WSVSEL 167
>gi|242803045|ref|XP_002484094.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Talaromyces stipitatus ATCC 10500]
gi|218717439|gb|EED16860.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Talaromyces stipitatus ATCC 10500]
Length = 162
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
Query: 63 MKVKSKNQIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKEL 121
M+ + +I N+ + + +YERARVLGTRALQI+M APV+V+LEGETDPLQIA+KEL
Sbjct: 76 MEQPREKKIPNDQRSTTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKEL 135
Query: 122 KARKIPIIIRRYLPDNSYEDWGIDEL 147
+KIP+IIRRYLPD YEDW +EL
Sbjct: 136 NQKKIPLIIRRYLPDGYYEDWTCEEL 161
>gi|326481266|gb|EGE05276.1| hypothetical protein TEQG_04432 [Trichophyton equinum CBS 127.97]
Length = 155
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 78/116 (67%), Gaps = 9/116 (7%)
Query: 33 PSKANKWMGDLNLILGIKGERALVLILNHYMKVKSKNQIKNNNKLNIKQI-RYERARVLG 91
P N GD N+ G +G+ +L + + ++ N+ + + +YERARVLG
Sbjct: 47 PVTTNGENGDPNVSSG-QGQGKTIL-------QQREKKVANDQRTTTPYMTKYERARVLG 98
Query: 92 TRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDEL 147
TRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+IIRRYLPD YEDW +EL
Sbjct: 99 TRALQISMNAPILVDLEGETDPLQIALKELNQKKIPLIIRRYLPDGWYEDWTCEEL 154
>gi|412988852|emb|CCO15443.1| DNA-directed RNA polymerases I [Bathycoccus prasinos]
Length = 150
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 69/101 (68%)
Query: 51 GERALVLILNHYMKVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGE 110
G+R+ L + K K+ +YERAR+LGTRALQI+M APV+V+LEGE
Sbjct: 43 GDRSSSLGAREGGGKRGKAVPKDQRTTTPYMTKYERARILGTRALQISMNAPVLVQLEGE 102
Query: 111 TDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 151
TDPL IA KEL+ +++P +RR++PD S+EDWG+DEL + D
Sbjct: 103 TDPLDIANKELREKRVPFTVRRFMPDGSWEDWGVDELIVED 143
>gi|326476037|gb|EGE00047.1| DNA-directed RNA polymerase I [Trichophyton tonsurans CBS 112818]
Length = 161
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 78/116 (67%), Gaps = 9/116 (7%)
Query: 33 PSKANKWMGDLNLILGIKGERALVLILNHYMKVKSKNQIKNNNKLNIKQI-RYERARVLG 91
P N GD N+ G +G+ +L + + ++ N+ + + +YERARVLG
Sbjct: 53 PVTTNGENGDPNVSSG-QGQGKTIL-------QQREKKVANDQRTTTPYMTKYERARVLG 104
Query: 92 TRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDEL 147
TRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+IIRRYLPD YEDW +EL
Sbjct: 105 TRALQISMNAPILVDLEGETDPLQIALKELNQKKIPLIIRRYLPDGWYEDWTCEEL 160
>gi|256084640|ref|XP_002578535.1| DNA-directed rna polymerase subunit rpb6 [Schistosoma mansoni]
gi|353228703|emb|CCD74874.1| putative DNA-directed rna polymerase subunit rpb6 [Schistosoma
mansoni]
Length = 134
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 58/65 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLG RALQ++M APVMVEL+GE DPL+IA KEL+A KIPIIIRR+LPD S+EDW
Sbjct: 66 KYERARVLGARALQLSMSAPVMVELDGERDPLKIAEKELRANKIPIIIRRFLPDGSFEDW 125
Query: 143 GIDEL 147
+DEL
Sbjct: 126 SLDEL 130
>gi|393218150|gb|EJD03638.1| RNA polymerase Rpb6 [Fomitiporia mediterranea MF3/22]
Length = 127
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 58/65 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APV+V+L+GETD LQIA+KEL RKIP+IIRRYLPD S+EDW
Sbjct: 60 KYERARVLGTRALQISMNAPVLVQLDGETDALQIAIKELSQRKIPLIIRRYLPDGSFEDW 119
Query: 143 GIDEL 147
+ EL
Sbjct: 120 SVAEL 124
>gi|302695611|ref|XP_003037484.1| RNA polymerase Rpb6 [Schizophyllum commune H4-8]
gi|300111181|gb|EFJ02582.1| RNA polymerase Rpb6, partial [Schizophyllum commune H4-8]
Length = 176
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 70/106 (66%), Gaps = 16/106 (15%)
Query: 58 ILNHYMKVKSKNQIKNNNKLNIKQ----------------IRYERARVLGTRALQIAMCA 101
+ +H K+ + +++ K N+ + +YERAR+LGTRALQI+M A
Sbjct: 68 VTDHDTKMGGVEEAEDSRKPNVDEHGERQPNKERVTTPYLTKYERARILGTRALQISMNA 127
Query: 102 PVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDEL 147
PV+V L+GETD LQIA+KEL RKIP+IIRRYLPD S+EDW + EL
Sbjct: 128 PVLVPLDGETDALQIAIKELSQRKIPLIIRRYLPDGSFEDWSVSEL 173
>gi|299756146|ref|XP_001829127.2| subunit common to RNA polymerase I [Coprinopsis cinerea
okayama7#130]
gi|298411543|gb|EAU92762.2| subunit common to RNA polymerase I [Coprinopsis cinerea
okayama7#130]
Length = 163
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 82/144 (56%), Gaps = 10/144 (6%)
Query: 14 YGSWLGWAFT-----LLLDENAPTPSKANKWMGDLNLILGI-KGERALVLILNHYMKVKS 67
YG G F LL ++ + GD + G +G++ + +
Sbjct: 17 YGGGFGEEFADETYDLLAEQQGEGQTNGEAVHGDGQQVNGANEGDQDQEMANGDAAPAAA 76
Query: 68 KNQIKNN-NKLNIKQ---IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKA 123
Q + NK+ + +YERAR+LGTRALQI+M APV+V L+GETD LQIA+KEL
Sbjct: 77 PTQAERQPNKVRVTTPYLTKYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQ 136
Query: 124 RKIPIIIRRYLPDNSYEDWGIDEL 147
RKIP+IIRRYLPD S+EDW + EL
Sbjct: 137 RKIPLIIRRYLPDGSFEDWSVSEL 160
>gi|449550917|gb|EMD41881.1| hypothetical protein CERSUDRAFT_110440 [Ceriporiopsis subvermispora
B]
Length = 170
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 57/65 (87%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRRYLPD S+EDW
Sbjct: 103 KYERARVLGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLPDGSFEDW 162
Query: 143 GIDEL 147
+ EL
Sbjct: 163 SVSEL 167
>gi|453088806|gb|EMF16846.1| RNA polymerase Rpb6 [Mycosphaerella populorum SO2202]
Length = 126
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 65/89 (73%)
Query: 59 LNHYMKVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAM 118
+N V+SK + +YERARVLGTRALQI+M APV+V++E ETDPLQIA+
Sbjct: 37 VNSVKSVRSKKIATDKRTTTPYMTKYERARVLGTRALQISMGAPVLVDVESETDPLQIAL 96
Query: 119 KELKARKIPIIIRRYLPDNSYEDWGIDEL 147
KEL+ +KIP+++RRYLPD YEDW +EL
Sbjct: 97 KELREKKIPLVVRRYLPDGYYEDWTCEEL 125
>gi|255082354|ref|XP_002504163.1| predicted protein [Micromonas sp. RCC299]
gi|226519431|gb|ACO65421.1| predicted protein [Micromonas sp. RCC299]
Length = 138
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 61/69 (88%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V+L+GETDPL+IA KEL+ ++IP +RRYLPD S+EDW
Sbjct: 63 KYERARILGTRALQISMNAPVLVQLDGETDPLEIAGKELREKRIPFTVRRYLPDGSWEDW 122
Query: 143 GIDELKIID 151
G+DEL + D
Sbjct: 123 GVDELIVED 131
>gi|340905234|gb|EGS17602.1| hypothetical protein CTHT_0069410 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 158
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 59/66 (89%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRYLPD YED
Sbjct: 91 TKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYLPDGYYED 150
Query: 142 WGIDEL 147
W +EL
Sbjct: 151 WTCEEL 156
>gi|336376971|gb|EGO05306.1| hypothetical protein SERLA73DRAFT_174398 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390020|gb|EGO31163.1| hypothetical protein SERLADRAFT_455900 [Serpula lacrymans var.
lacrymans S7.9]
Length = 170
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 57/65 (87%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRRYLPD S+EDW
Sbjct: 103 KYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLPDGSFEDW 162
Query: 143 GIDEL 147
+ EL
Sbjct: 163 SVSEL 167
>gi|308799962|ref|XP_003074762.1| RNA polymerase subunit K (ISS) [Ostreococcus tauri]
gi|116061302|emb|CAL52020.1| RNA polymerase subunit K (ISS) [Ostreococcus tauri]
Length = 149
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 61/69 (88%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APV+V+LEGETDPL+IA KEL+ +++P ++RRYLPD SYEDW
Sbjct: 75 KYERARVLGTRALQISMNAPVLVQLEGETDPLEIAGKELREKRVPFVVRRYLPDGSYEDW 134
Query: 143 GIDELKIID 151
I+EL + D
Sbjct: 135 CIEELIVHD 143
>gi|452847500|gb|EME49432.1| hypothetical protein DOTSEDRAFT_68260 [Dothistroma septosporum
NZE10]
Length = 165
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 64/88 (72%)
Query: 60 NHYMKVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMK 119
N VKSK + +YERARVLGTRALQI+M APV+V++E ETDPLQIA+K
Sbjct: 77 NTVKSVKSKKISQEKRTTTPYMTKYERARVLGTRALQISMGAPVLVDVESETDPLQIALK 136
Query: 120 ELKARKIPIIIRRYLPDNSYEDWGIDEL 147
EL+ +KIP+++RRYLPD YEDW +EL
Sbjct: 137 ELREKKIPLVVRRYLPDGYYEDWTCEEL 164
>gi|449298782|gb|EMC94797.1| hypothetical protein BAUCODRAFT_36057 [Baudoinia compniacensis UAMH
10762]
Length = 171
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 64/83 (77%)
Query: 65 VKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKAR 124
VKSK + +YERARVLGTRALQI+M APV+V++EGETDPLQIA+KEL+ +
Sbjct: 87 VKSKKIAADKRTTTPYMTKYERARVLGTRALQISMNAPVLVDVEGETDPLQIAIKELREK 146
Query: 125 KIPIIIRRYLPDNSYEDWGIDEL 147
K+P+++RRYLPD YEDW +EL
Sbjct: 147 KVPLVVRRYLPDGWYEDWTCEEL 169
>gi|327296802|ref|XP_003233095.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
gi|326464401|gb|EGD89854.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
Length = 161
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 77/116 (66%), Gaps = 9/116 (7%)
Query: 33 PSKANKWMGDLNLILGIKGERALVLILNHYMKVKSKNQIKNNNKLNIKQI-RYERARVLG 91
P N GD N G +G+ +L + + ++ N+ + + +YERARVLG
Sbjct: 53 PVTTNGENGDPNASSG-QGQGKTIL-------QQREKKVANDQRTTTPYMTKYERARVLG 104
Query: 92 TRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDEL 147
TRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+IIRRYLPD YEDW +EL
Sbjct: 105 TRALQISMNAPILVDLEGETDPLQIALKELNQKKIPLIIRRYLPDGWYEDWTCEEL 160
>gi|154336273|ref|XP_001564372.1| putative DNA-directed RNA polymerase subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134061407|emb|CAM38432.1| putative DNA-directed RNA polymerase subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 159
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 56/65 (86%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APV V LEGETDPL IA+KEL+ R+ P+IIRR LPDN+YEDW
Sbjct: 80 KYERARVLGTRALQISMNAPVAVALEGETDPLTIAIKELRERRTPLIIRRVLPDNTYEDW 139
Query: 143 GIDEL 147
+ EL
Sbjct: 140 SVSEL 144
>gi|440296096|gb|ELP88937.1| DNA-directed RNA polymerase I, II, and III subunit RPABC2, putative
[Entamoeba invadens IP1]
Length = 125
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 72/96 (75%), Gaps = 5/96 (5%)
Query: 57 LILNHYMKVKSKNQIKNNNKLNIK-QIRYERARVLGTRALQIAMCAPVMVELEGETDPLQ 115
L +++Y++ K +IK N++ K +YE+ARVLGTRALQI+M APV V L G TDPLQ
Sbjct: 34 LGIDNYVETK---EIKGNDRTTTKFMTKYEKARVLGTRALQISMNAPVFVNLNGMTDPLQ 90
Query: 116 IAMKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 151
IAM+ELK +KIP IIRR LP+ SYEDW I EL IID
Sbjct: 91 IAMEELKEKKIPFIIRRRLPNGSYEDWKISEL-IID 125
>gi|342872060|gb|EGU74463.1| hypothetical protein FOXB_15030 [Fusarium oxysporum Fo5176]
Length = 158
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 64/83 (77%)
Query: 65 VKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKAR 124
+K K +N +YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KE++ +
Sbjct: 70 LKDKKIPENERTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKEMREK 129
Query: 125 KIPIIIRRYLPDNSYEDWGIDEL 147
KIP+I+RRY+PD YEDW +EL
Sbjct: 130 KIPLIVRRYMPDGYYEDWTCEEL 152
>gi|392571015|gb|EIW64187.1| RNA polymerase Rpb6 [Trametes versicolor FP-101664 SS1]
Length = 165
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 57/66 (86%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERARVLGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRRYLPD S+ED
Sbjct: 97 TKYERARVLGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLPDGSFED 156
Query: 142 WGIDEL 147
W + EL
Sbjct: 157 WSVSEL 162
>gi|116192063|ref|XP_001221844.1| hypothetical protein CHGG_05749 [Chaetomium globosum CBS 148.51]
gi|88181662|gb|EAQ89130.1| hypothetical protein CHGG_05749 [Chaetomium globosum CBS 148.51]
Length = 160
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 59/66 (89%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YE+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRYLPD YED
Sbjct: 93 TKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYLPDGYYED 152
Query: 142 WGIDEL 147
W +EL
Sbjct: 153 WSCEEL 158
>gi|443918254|gb|ELU38777.1| RNA polymerase rpb6 domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 149
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
Query: 63 MKVKSKNQIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKEL 121
M V + + N ++ + + +YERAR+LGTRALQI+M APV+V L+GE+DPLQIA+KEL
Sbjct: 61 MGVVEQQRQPNKERITTRYLTKYERARILGTRALQISMNAPVLVPLDGESDPLQIAIKEL 120
Query: 122 KARKIPIIIRRYLPDNSYEDWGIDEL 147
+KIP++IRRYLPD S+EDW + EL
Sbjct: 121 AQKKIPLVIRRYLPDGSFEDWSVSEL 146
>gi|315044053|ref|XP_003171402.1| DNA-directed RNA polymerase I [Arthroderma gypseum CBS 118893]
gi|311343745|gb|EFR02948.1| DNA-directed RNA polymerase I [Arthroderma gypseum CBS 118893]
Length = 161
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 58/66 (87%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+IIRRYLPD YED
Sbjct: 95 TKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELNQKKIPLIIRRYLPDGWYED 154
Query: 142 WGIDEL 147
W +EL
Sbjct: 155 WTCEEL 160
>gi|307108763|gb|EFN57002.1| hypothetical protein CHLNCDRAFT_21734 [Chlorella variabilis]
Length = 116
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 60/70 (85%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YE+ARVLGTRALQI+M APVMVE+ ETDPL+IA KEL+ +KIP IIRRYLPDNS+EDW
Sbjct: 47 KYEKARVLGTRALQISMNAPVMVEVGTETDPLEIAYKELREKKIPFIIRRYLPDNSFEDW 106
Query: 143 GIDELKIIDR 152
+ EL I +R
Sbjct: 107 SLAELIIPER 116
>gi|326426823|gb|EGD72393.1| DNA-directed RNA polymerase I [Salpingoeca sp. ATCC 50818]
Length = 115
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/96 (58%), Positives = 73/96 (76%), Gaps = 9/96 (9%)
Query: 65 VKSKNQIKNNNKLNIKQ---IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKEL 121
+ + +++K +K + +YERARVLG RALQI+M AP+MVELEGETDPL+IA KEL
Sbjct: 19 ITTDSEVKKPSKPRVTTRYMTKYERARVLGARALQISMNAPLMVELEGETDPLRIAQKEL 78
Query: 122 KARKIPIIIRRYLPDN-----SYEDWGIDELKIIDR 152
A KIP+IIRRYLPD+ SYEDWG++EL I++R
Sbjct: 79 LAGKIPMIIRRYLPDHTPENPSYEDWGVNEL-IVER 113
>gi|395334449|gb|EJF66825.1| RNA polymerase Rpb6 [Dichomitus squalens LYAD-421 SS1]
Length = 165
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 57/66 (86%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERARVLGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRRYLPD S+ED
Sbjct: 97 TKYERARVLGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLPDGSFED 156
Query: 142 WGIDEL 147
W + EL
Sbjct: 157 WSVSEL 162
>gi|156051800|ref|XP_001591861.1| hypothetical protein SS1G_07307 [Sclerotinia sclerotiorum 1980]
gi|154705085|gb|EDO04824.1| hypothetical protein SS1G_07307 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 165
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 74/105 (70%), Gaps = 8/105 (7%)
Query: 51 GERALVLILNHYMKVKSKNQIKNNNKLNIKQIR--------YERARVLGTRALQIAMCAP 102
GER +V + + ++K+ I +K K+ R YERAR+LGTRALQI+M AP
Sbjct: 59 GERGVVTSGDLHAANRAKSNIAPKDKKIPKEQRTTTPYMTKYERARILGTRALQISMNAP 118
Query: 103 VMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDEL 147
++V+ EGETDPLQIA+KEL+ +KIP+I+RRY+PD YEDW +EL
Sbjct: 119 ILVDQEGETDPLQIAIKELRDKKIPLIVRRYMPDGWYEDWTCEEL 163
>gi|393244461|gb|EJD51973.1| RNA polymerase Rpb6 [Auricularia delicata TFB-10046 SS5]
Length = 110
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 57/65 (87%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APV+V LEGETD LQIA+KEL +KIP+IIRRYLPD S+EDW
Sbjct: 43 KYERARVLGTRALQISMNAPVLVPLEGETDALQIAIKELSQKKIPLIIRRYLPDGSFEDW 102
Query: 143 GIDEL 147
I +L
Sbjct: 103 SIKDL 107
>gi|406858817|gb|EKD11904.1| DNA-directed RNA polymerases I, II, and III [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 167
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 59/66 (89%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+PD YED
Sbjct: 100 TKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPDGMYED 159
Query: 142 WGIDEL 147
W +EL
Sbjct: 160 WTCEEL 165
>gi|425773051|gb|EKV11426.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Penicillium digitatum PHI26]
gi|425782176|gb|EKV20101.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Penicillium digitatum Pd1]
Length = 153
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Query: 63 MKVKSKNQIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKEL 121
M+ + ++ N+ + + +YERARVLGTRALQI+M APV+V+LEGETDPLQIAM EL
Sbjct: 67 MEQSREKKVPNDQRTTTPYLTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAMMEL 126
Query: 122 KARKIPIIIRRYLPDNSYEDWGIDEL 147
+KIP+IIRRYLPD YEDW +EL
Sbjct: 127 NQKKIPLIIRRYLPDGWYEDWTCEEL 152
>gi|367027080|ref|XP_003662824.1| hypothetical protein MYCTH_2138933 [Myceliophthora thermophila ATCC
42464]
gi|347010093|gb|AEO57579.1| hypothetical protein MYCTH_2138933 [Myceliophthora thermophila ATCC
42464]
Length = 159
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
Query: 42 DLNLILGIKGERALVLILNHYMKVKSKNQIKNNNKLNIK-QIRYERARVLGTRALQIAMC 100
D + ++ A + K +I N+ + +YE+AR+LGTRALQI+M
Sbjct: 51 DADHVIASGDPNATANVGKGSEKSHKDKKIPNDQRTTTPFMTKYEKARILGTRALQISMN 110
Query: 101 APVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDEL 147
APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRYLPD YEDW +EL
Sbjct: 111 APVLVDLEGETDPLQIAIKELREKKIPLIVRRYLPDGYYEDWTCEEL 157
>gi|154315392|ref|XP_001557019.1| DNA-directed RNA polymerases I, II, and III [Botryotinia fuckeliana
B05.10]
gi|347839609|emb|CCD54181.1| similar to DNA-directed RNA polymerase I [Botryotinia fuckeliana]
Length = 163
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 74/105 (70%), Gaps = 8/105 (7%)
Query: 51 GERALVLILNHYMKVKSKNQIKNNNKLNIKQIR--------YERARVLGTRALQIAMCAP 102
GER +V + + ++K+ I +K K+ R YERAR+LGTRALQI+M AP
Sbjct: 57 GERGVVTSGDLHAANRAKSNIAPKDKKIPKEQRTTTPYMTKYERARILGTRALQISMNAP 116
Query: 103 VMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDEL 147
++V+ EGETDPLQIA+KEL+ +KIP+I+RRY+PD YEDW +EL
Sbjct: 117 ILVDQEGETDPLQIAIKELRDKKIPLIVRRYMPDGWYEDWTCEEL 161
>gi|392597744|gb|EIW87066.1| RNA polymerase Rpb6 [Coniophora puteana RWD-64-598 SS2]
Length = 113
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 57/65 (87%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRRYLPD S+EDW
Sbjct: 46 KYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLPDGSFEDW 105
Query: 143 GIDEL 147
+ EL
Sbjct: 106 SVSEL 110
>gi|157875592|ref|XP_001686182.1| putative DNA-directed RNA polymerase subunit [Leishmania major
strain Friedlin]
gi|68129256|emb|CAJ07796.1| putative DNA-directed RNA polymerase subunit [Leishmania major
strain Friedlin]
Length = 159
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 56/65 (86%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APV V LEGETDPL IA+KEL+ R+ P+IIRR LPDN+YEDW
Sbjct: 80 KYERARVLGTRALQISMNAPVAVALEGETDPLTIAVKELRERRTPLIIRRVLPDNTYEDW 139
Query: 143 GIDEL 147
+ EL
Sbjct: 140 SVSEL 144
>gi|440636814|gb|ELR06733.1| hypothetical protein GMDG_00350 [Geomyces destructans 20631-21]
Length = 163
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
Query: 64 KVKSKNQIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK 122
K +I N+ + + +YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+
Sbjct: 77 KAPKDKKIANDQRTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELR 136
Query: 123 ARKIPIIIRRYLPDNSYEDWGIDEL 147
+KIP+I+RRY+PD YEDW +EL
Sbjct: 137 EKKIPLIVRRYMPDGWYEDWTCEEL 161
>gi|303281806|ref|XP_003060195.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458850|gb|EEH56147.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 84
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 60/69 (86%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V+L+GETDPL+IA KEL+ ++IP +RRYLPD S+EDW
Sbjct: 9 KYERARILGTRALQISMNAPVLVQLDGETDPLEIAGKELREKRIPFTVRRYLPDGSFEDW 68
Query: 143 GIDELKIID 151
+DEL I D
Sbjct: 69 SVDELIIED 77
>gi|401428389|ref|XP_003878677.1| putative DNA-directed RNA polymerase subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494926|emb|CBZ30229.1| putative DNA-directed RNA polymerase subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 159
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 56/65 (86%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APV V LEGETDPL IA+KEL+ R+ P+IIRR LPDN+YEDW
Sbjct: 80 KYERARVLGTRALQISMNAPVAVALEGETDPLTIAVKELRERRTPLIIRRVLPDNTYEDW 139
Query: 143 GIDEL 147
+ EL
Sbjct: 140 SVSEL 144
>gi|367050762|ref|XP_003655760.1| hypothetical protein THITE_2119818 [Thielavia terrestris NRRL 8126]
gi|347003024|gb|AEO69424.1| hypothetical protein THITE_2119818 [Thielavia terrestris NRRL 8126]
Length = 167
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Query: 64 KVKSKNQIKNNNKLNIK-QIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK 122
K +I N+ + +YE+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+
Sbjct: 81 KSHKDKKIPNDQRTTTPFMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELR 140
Query: 123 ARKIPIIIRRYLPDNSYEDWGIDEL 147
+KIP+I+RRYLPD YEDW +EL
Sbjct: 141 EKKIPLIVRRYLPDGYYEDWTCEEL 165
>gi|296811616|ref|XP_002846146.1| DNA-directed RNA polymerase I [Arthroderma otae CBS 113480]
gi|238843534|gb|EEQ33196.1| DNA-directed RNA polymerase I [Arthroderma otae CBS 113480]
Length = 161
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 58/66 (87%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+IIRRYLPD YED
Sbjct: 95 TKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELNQKKIPLIIRRYLPDGWYED 154
Query: 142 WGIDEL 147
W +EL
Sbjct: 155 WTCEEL 160
>gi|409083797|gb|EKM84154.1| hypothetical protein AGABI1DRAFT_31547 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 99
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 62/79 (78%), Gaps = 3/79 (3%)
Query: 72 KNNNKLNIKQ---IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPI 128
+ NK+ I +YERAR+LGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+
Sbjct: 18 RQPNKVRITTPYLTKYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPL 77
Query: 129 IIRRYLPDNSYEDWGIDEL 147
IIRRYLPD S+EDW + EL
Sbjct: 78 IIRRYLPDGSFEDWSVSEL 96
>gi|426201144|gb|EKV51067.1| hypothetical protein AGABI2DRAFT_61363 [Agaricus bisporus var.
bisporus H97]
Length = 99
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 57/65 (87%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRRYLPD S+EDW
Sbjct: 32 KYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLPDGSFEDW 91
Query: 143 GIDEL 147
+ EL
Sbjct: 92 SVSEL 96
>gi|146098767|ref|XP_001468465.1| putative DNA-directed RNA polymerase subunit [Leishmania infantum
JPCM5]
gi|134072833|emb|CAM71549.1| putative DNA-directed RNA polymerase subunit [Leishmania infantum
JPCM5]
Length = 159
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 56/65 (86%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APV V LEGETDPL IA+KEL+ R+ P+IIRR LPDN+YEDW
Sbjct: 80 KYERARVLGTRALQISMNAPVAVALEGETDPLTIAVKELRERRTPLIIRRVLPDNTYEDW 139
Query: 143 GIDEL 147
+ EL
Sbjct: 140 SVSEL 144
>gi|398022190|ref|XP_003864257.1| DNA-directed RNA polymerase subunit, putative [Leishmania donovani]
gi|322502492|emb|CBZ37575.1| DNA-directed RNA polymerase subunit, putative [Leishmania donovani]
Length = 159
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 56/65 (86%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APV V LEGETDPL IA+KEL+ R+ P+IIRR LPDN+YEDW
Sbjct: 80 KYERARVLGTRALQISMNAPVAVALEGETDPLTIAVKELRERRTPLIIRRVLPDNTYEDW 139
Query: 143 GIDEL 147
+ EL
Sbjct: 140 SVSEL 144
>gi|402077218|gb|EJT72567.1| DNA-directed RNA polymerase I [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 155
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 75/123 (60%), Gaps = 1/123 (0%)
Query: 26 LDENAPTPSKANKWMGDLNLILGIKGERALVLILNHYMKVKSKNQIKNNNKLNIK-QIRY 84
D P + D N+++ A + +K +I N+ + +Y
Sbjct: 31 FDPEVPVSDDEDIGGDDPNVVVSGDPNGAAKRGGGNTLKSHKDKKIPNDKRTTTPFMTKY 90
Query: 85 ERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGI 144
E+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL +KIP+IIRRY+PD YEDW
Sbjct: 91 EKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELAEKKIPLIIRRYMPDGFYEDWTC 150
Query: 145 DEL 147
+EL
Sbjct: 151 EEL 153
>gi|145229113|ref|XP_001388865.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Aspergillus niger CBS 513.88]
gi|134054964|emb|CAK36973.1| unnamed protein product [Aspergillus niger]
gi|350638035|gb|EHA26391.1| hypothetical protein ASPNIDRAFT_36183 [Aspergillus niger ATCC 1015]
gi|358372043|dbj|GAA88648.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus kawachii IFO 4308]
Length = 160
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
Query: 63 MKVKSKNQIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKEL 121
M+ + ++ N+ + + +YERARVLGTRALQI+M APV+V+LEGETDPLQIA+KEL
Sbjct: 74 MEQTREKKVPNDQRQTTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKEL 133
Query: 122 KARKIPIIIRRYLPDNSYEDWGIDEL 147
+KIP+I+RRYLPD YEDW +EL
Sbjct: 134 NQKKIPLIVRRYLPDGWYEDWTCEEL 159
>gi|380487611|emb|CCF37926.1| RNA polymerase Rpb6 [Colletotrichum higginsianum]
Length = 153
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 59/65 (90%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+PD YEDW
Sbjct: 87 KYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPDGYYEDW 146
Query: 143 GIDEL 147
+EL
Sbjct: 147 TCEEL 151
>gi|320587906|gb|EFX00381.1| DNA-directed RNA polymerase and 3 subunit rpb6 [Grosmannia
clavigera kw1407]
Length = 164
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 59/66 (89%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YE+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +K+P+I+RRYLPD YED
Sbjct: 97 TKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKVPLIVRRYLPDGFYED 156
Query: 142 WGIDEL 147
W +EL
Sbjct: 157 WTCEEL 162
>gi|238587830|ref|XP_002391548.1| hypothetical protein MPER_09004 [Moniliophthora perniciosa FA553]
gi|215456356|gb|EEB92478.1| hypothetical protein MPER_09004 [Moniliophthora perniciosa FA553]
Length = 169
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 57/65 (87%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRRYLPD S+EDW
Sbjct: 102 KYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLPDGSFEDW 161
Query: 143 GIDEL 147
+ EL
Sbjct: 162 SVSEL 166
>gi|170084301|ref|XP_001873374.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650926|gb|EDR15166.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 86
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 57/65 (87%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRRYLPD S+EDW
Sbjct: 21 KYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLPDGSFEDW 80
Query: 143 GIDEL 147
+ EL
Sbjct: 81 SVSEL 85
>gi|302406322|ref|XP_003000997.1| DNA-directed RNA polymerases I [Verticillium albo-atrum VaMs.102]
gi|261360255|gb|EEY22683.1| DNA-directed RNA polymerases I [Verticillium albo-atrum VaMs.102]
Length = 149
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 59/65 (90%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YE+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+PD YEDW
Sbjct: 83 KYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPDGYYEDW 142
Query: 143 GIDEL 147
+EL
Sbjct: 143 TCEEL 147
>gi|313236536|emb|CBY11850.1| unnamed protein product [Oikopleura dioica]
Length = 114
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/59 (83%), Positives = 54/59 (91%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERAR+LGTRALQIAM APVMVEL GETDPL IA+KELK +KIPII+RRYLPD SYED
Sbjct: 55 KYERARILGTRALQIAMNAPVMVELRGETDPLAIALKELKVKKIPIIVRRYLPDGSYED 113
>gi|303322929|ref|XP_003071456.1| DNA-directed RNA polymerase subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240111158|gb|EER29311.1| DNA-directed RNA polymerase subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
Length = 158
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 67/100 (67%)
Query: 48 GIKGERALVLILNHYMKVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVEL 107
G G+ A ++ + K + +YERARVLGTRALQI+M AP++V+L
Sbjct: 58 GANGDSAAASKSKVMLQQREKKVPNDQRTTTPYMTKYERARVLGTRALQISMNAPILVDL 117
Query: 108 EGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDEL 147
EGETDPLQIA+KEL +KIP+I+RRYLPD YEDW +EL
Sbjct: 118 EGETDPLQIALKELNQKKIPLIVRRYLPDGWYEDWTCEEL 157
>gi|310793050|gb|EFQ28511.1| RNA polymerase Rpb6 [Glomerella graminicola M1.001]
Length = 152
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 59/66 (89%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+PD YED
Sbjct: 85 TKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPDGYYED 144
Query: 142 WGIDEL 147
W +EL
Sbjct: 145 WTCEEL 150
>gi|346971509|gb|EGY14961.1| DNA-directed RNA polymerases I [Verticillium dahliae VdLs.17]
Length = 149
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 59/65 (90%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YE+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+PD YEDW
Sbjct: 83 KYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPDGYYEDW 142
Query: 143 GIDEL 147
+EL
Sbjct: 143 TCEEL 147
>gi|238486558|ref|XP_002374517.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus flavus NRRL3357]
gi|317144162|ref|XP_003189570.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Aspergillus oryzae RIB40]
gi|220699396|gb|EED55735.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus flavus NRRL3357]
Length = 159
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 76/114 (66%), Gaps = 7/114 (6%)
Query: 41 GDLNLILGIKGERALVL------ILNHYMKVKSKNQIKNNNKLNIKQI-RYERARVLGTR 93
G+ + + G+R +V M+ + ++ N+ + + +YERARVLGTR
Sbjct: 45 GEDHYTPAVNGDRVVVSGDPSAGYSGKVMEQVRERKVPNDQRTTTPYMTKYERARVLGTR 104
Query: 94 ALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDEL 147
ALQI+M APV+V+LEGETDPLQIA+KEL +KIP+I+RRYLPD YEDW +EL
Sbjct: 105 ALQISMNAPVLVDLEGETDPLQIAIKELNQKKIPLIVRRYLPDGWYEDWTCEEL 158
>gi|226292518|gb|EEH47938.1| DNA-directed RNA polymerases I [Paracoccidioides brasiliensis Pb18]
Length = 165
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 58/66 (87%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+I+RRYLPD YED
Sbjct: 99 TKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELAQKKIPLIVRRYLPDGWYED 158
Query: 142 WGIDEL 147
W +EL
Sbjct: 159 WTCEEL 164
>gi|225680818|gb|EEH19102.1| DNA-directed RNA polymerases I [Paracoccidioides brasiliensis Pb03]
Length = 165
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 58/66 (87%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+I+RRYLPD YED
Sbjct: 99 TKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELAQKKIPLIVRRYLPDGWYED 158
Query: 142 WGIDEL 147
W +EL
Sbjct: 159 WTCEEL 164
>gi|390604614|gb|EIN14005.1| subunit common to RNA polymerase I, partial [Punctularia
strigosozonata HHB-11173 SS5]
Length = 144
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 57/65 (87%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRR+LPD S+EDW
Sbjct: 77 KYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRFLPDGSFEDW 136
Query: 143 GIDEL 147
+ EL
Sbjct: 137 SVSEL 141
>gi|452989682|gb|EME89437.1| hypothetical protein MYCFIDRAFT_27771, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 124
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 63/88 (71%)
Query: 60 NHYMKVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMK 119
N VKSK +YERARVLGTRALQI++ APV+V++E ETDPLQIA+K
Sbjct: 36 NTVKGVKSKKIANEKRTTTPYMTKYERARVLGTRALQISLGAPVLVDVESETDPLQIALK 95
Query: 120 ELKARKIPIIIRRYLPDNSYEDWGIDEL 147
EL+ +KIP+++RRYLPD YEDW +EL
Sbjct: 96 ELREKKIPLVVRRYLPDGYYEDWTCEEL 123
>gi|295672808|ref|XP_002796950.1| DNA-directed RNA polymerases I [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282322|gb|EEH37888.1| DNA-directed RNA polymerases I [Paracoccidioides sp. 'lutzii' Pb01]
Length = 165
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 58/66 (87%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+I+RRYLPD YED
Sbjct: 99 TKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELAQKKIPLIVRRYLPDGWYED 158
Query: 142 WGIDEL 147
W +EL
Sbjct: 159 WTCEEL 164
>gi|378727457|gb|EHY53916.1| DNA-directed RNA Polymerase II subunit F [Exophiala dermatitidis
NIH/UT8656]
Length = 152
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 58/66 (87%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERARVLGTRALQI+M APV+V+LEGETDPLQIA+KEL +KIP+++RRYLPD YED
Sbjct: 86 TKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKELNQKKIPLVVRRYLPDGWYED 145
Query: 142 WGIDEL 147
W +EL
Sbjct: 146 WTCEEL 151
>gi|320033471|gb|EFW15419.1| DNA-directed RNA polymerase I [Coccidioides posadasii str.
Silveira]
gi|392868331|gb|EJB11472.1| DNA-directed RNA polymerase I [Coccidioides immitis RS]
Length = 167
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
Query: 63 MKVKSKNQIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKEL 121
M + + ++ N+ + + +YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL
Sbjct: 81 MLQQREKKVPNDQRTTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKEL 140
Query: 122 KARKIPIIIRRYLPDNSYEDWGIDEL 147
+KIP+I+RRYLPD YEDW +EL
Sbjct: 141 NQKKIPLIVRRYLPDGWYEDWTCEEL 166
>gi|325092943|gb|EGC46253.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus H88]
Length = 165
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 58/66 (87%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+I+RRYLPD YED
Sbjct: 99 TKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELAQKKIPLIVRRYLPDGWYED 158
Query: 142 WGIDEL 147
W +EL
Sbjct: 159 WTCEEL 164
>gi|429859788|gb|ELA34554.1| DNA-directed RNA polymerases i [Colletotrichum gloeosporioides Nara
gc5]
Length = 153
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 59/66 (89%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KE++ +KIP+I+RRY+PD YED
Sbjct: 86 TKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKEMREKKIPLIVRRYMPDGYYED 145
Query: 142 WGIDEL 147
W +EL
Sbjct: 146 WTCEEL 151
>gi|408398977|gb|EKJ78102.1| hypothetical protein FPSE_01563 [Fusarium pseudograminearum CS3096]
Length = 201
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 59/65 (90%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KE++ +KIP+I+RRY+PD YEDW
Sbjct: 85 KYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKEMREKKIPLIVRRYMPDGYYEDW 144
Query: 143 GIDEL 147
+EL
Sbjct: 145 TCEEL 149
>gi|261188394|ref|XP_002620612.1| DNA-directed RNA polymerase I [Ajellomyces dermatitidis SLH14081]
gi|239593212|gb|EEQ75793.1| DNA-directed RNA polymerase I [Ajellomyces dermatitidis SLH14081]
gi|239609354|gb|EEQ86341.1| DNA-directed RNA polymerase I [Ajellomyces dermatitidis ER-3]
Length = 162
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 58/66 (87%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+I+RRYLPD YED
Sbjct: 96 TKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELAQKKIPLIVRRYLPDGWYED 155
Query: 142 WGIDEL 147
W +EL
Sbjct: 156 WTCEEL 161
>gi|389630464|ref|XP_003712885.1| DNA-directed RNA polymerase I [Magnaporthe oryzae 70-15]
gi|351645217|gb|EHA53078.1| DNA-directed RNA polymerase I [Magnaporthe oryzae 70-15]
gi|440476364|gb|ELQ44972.1| DNA-directed RNA polymerases I [Magnaporthe oryzae Y34]
gi|440490438|gb|ELQ69995.1| DNA-directed RNA polymerases I [Magnaporthe oryzae P131]
Length = 151
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 58/65 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YE+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL +KIP+IIRRY+PD YEDW
Sbjct: 85 KYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELAEKKIPLIIRRYMPDGYYEDW 144
Query: 143 GIDEL 147
+EL
Sbjct: 145 TCEEL 149
>gi|389751166|gb|EIM92239.1| RNA polymerase Rpb6, partial [Stereum hirsutum FP-91666 SS1]
Length = 84
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 57/65 (87%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M AP++V L+GETD LQIA+KEL RKIP+IIRRYLPD S+EDW
Sbjct: 17 KYERARILGTRALQISMNAPILVPLDGETDALQIAIKELSQRKIPLIIRRYLPDGSFEDW 76
Query: 143 GIDEL 147
+ EL
Sbjct: 77 SVSEL 81
>gi|336469566|gb|EGO57728.1| DNA-directed RNA polymerases I [Neurospora tetrasperma FGSC 2508]
gi|350290786|gb|EGZ72000.1| DNA-directed RNA polymerases I [Neurospora tetrasperma FGSC 2509]
Length = 160
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 59/66 (89%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YE+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+PD YED
Sbjct: 93 TKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPDGYYED 152
Query: 142 WGIDEL 147
W +EL
Sbjct: 153 WTCEEL 158
>gi|336273668|ref|XP_003351588.1| hypothetical protein SMAC_00129 [Sordaria macrospora k-hell]
gi|380095868|emb|CCC05914.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 160
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 59/66 (89%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YE+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+PD YED
Sbjct: 93 TKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPDGFYED 152
Query: 142 WGIDEL 147
W +EL
Sbjct: 153 WTCEEL 158
>gi|119189661|ref|XP_001245437.1| hypothetical protein CIMG_04878 [Coccidioides immitis RS]
Length = 142
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
Query: 63 MKVKSKNQIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKEL 121
M + + ++ N+ + + +YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL
Sbjct: 56 MLQQREKKVPNDQRTTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKEL 115
Query: 122 KARKIPIIIRRYLPDNSYEDWGIDEL 147
+KIP+I+RRYLPD YEDW +EL
Sbjct: 116 NQKKIPLIVRRYLPDGWYEDWTCEEL 141
>gi|164428772|ref|XP_001728485.1| DNA-directed RNA polymerases I [Neurospora crassa OR74A]
gi|157072273|gb|EDO65394.1| DNA-directed RNA polymerases I [Neurospora crassa OR74A]
Length = 160
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 59/66 (89%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YE+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+PD YED
Sbjct: 93 TKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPDGYYED 152
Query: 142 WGIDEL 147
W +EL
Sbjct: 153 WTCEEL 158
>gi|323454986|gb|EGB10855.1| hypothetical protein AURANDRAFT_8009, partial [Aureococcus
anophagefferens]
Length = 77
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/69 (75%), Positives = 61/69 (88%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YE+ARVLGTRALQI+M APVMV++ GETDPL+IA KEL+ RKIP+IIRRYLPD SYEDW
Sbjct: 10 KYEKARVLGTRALQISMNAPVMVDVAGETDPLKIANKELRERKIPLIIRRYLPDGSYEDW 69
Query: 143 GIDELKIID 151
I +L IID
Sbjct: 70 PIRDL-IID 77
>gi|384493039|gb|EIE83530.1| hypothetical protein RO3G_08235 [Rhizopus delemar RA 99-880]
Length = 98
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 71/97 (73%), Gaps = 3/97 (3%)
Query: 51 GERALVLILNHYMKVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGE 110
GE A+ +I + S N+++ K YE+AR+LGTRALQI++ APVMVEL+GE
Sbjct: 2 GEAAIEIIEKGTEEQSSPNKVRQTTPYMTK---YEKARILGTRALQISLNAPVMVELDGE 58
Query: 111 TDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDEL 147
+D L IAMKEL+ +K+P+I+RR+LPDN++EDW + +L
Sbjct: 59 SDALVIAMKELREKKVPLIVRRFLPDNTFEDWDVKDL 95
>gi|328767393|gb|EGF77443.1| hypothetical protein BATDEDRAFT_91671 [Batrachochytrium
dendrobatidis JAM81]
Length = 148
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 59/65 (90%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YE+AR+LGTRALQI+M APVMV+L GE+DPLQIAMKEL+ RK+P+++RR++PD S+EDW
Sbjct: 80 KYEKARILGTRALQISMNAPVMVDLTGESDPLQIAMKELRERKVPLMVRRFMPDGSWEDW 139
Query: 143 GIDEL 147
+ EL
Sbjct: 140 SVQEL 144
>gi|402219908|gb|EJT99980.1| RNA polymerase Rpb6, partial [Dacryopinax sp. DJM-731 SS1]
Length = 82
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 57/66 (86%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQ++M AP +V EGETDPLQIA+KEL +KIP++IRRYLPD S+EDW
Sbjct: 15 KYERARILGTRALQLSMNAPALVNTEGETDPLQIAIKELAEKKIPLVIRRYLPDGSFEDW 74
Query: 143 GIDELK 148
+ EL+
Sbjct: 75 KVTELE 80
>gi|402219913|gb|EJT99985.1| RNA polymerase Rpb6 [Dacryopinax sp. DJM-731 SS1]
Length = 121
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 57/66 (86%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQ++M AP +V EGETDPLQIA+KEL +KIP++IRRYLPD S+EDW
Sbjct: 54 KYERARILGTRALQLSMNAPALVNTEGETDPLQIAIKELAEKKIPLVIRRYLPDGSFEDW 113
Query: 143 GIDELK 148
+ EL+
Sbjct: 114 KVTELE 119
>gi|345564745|gb|EGX47705.1| hypothetical protein AOL_s00083g213 [Arthrobotrys oligospora ATCC
24927]
Length = 170
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 66/83 (79%), Gaps = 1/83 (1%)
Query: 66 KSKNQIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKAR 124
++K +I N+ + + +YERAR+LGTRALQI+M APV+V+ EG+TDPL+IA+KEL +
Sbjct: 87 ENKKKIPNDKRTTTPYMTKYERARLLGTRALQISMNAPVLVDTEGQTDPLKIALKELNEK 146
Query: 125 KIPIIIRRYLPDNSYEDWGIDEL 147
KIP+++RRYLPD YEDW +EL
Sbjct: 147 KIPLVVRRYLPDGYYEDWTCEEL 169
>gi|358060676|dbj|GAA93615.1| hypothetical protein E5Q_00259 [Mixia osmundae IAM 14324]
Length = 147
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/78 (62%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 66 KSKNQIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKAR 124
KS Q N+ ++ + +YE+ARVLGTRALQI+M APV+V LE ETDPL+IAMKEL
Sbjct: 57 KSMPQTANSERITTPYMTKYEKARVLGTRALQISMNAPVLVTLENETDPLEIAMKELAQG 116
Query: 125 KIPIIIRRYLPDNSYEDW 142
KIP+I+RR+LPD SYEDW
Sbjct: 117 KIPLIVRRFLPDGSYEDW 134
>gi|164656523|ref|XP_001729389.1| hypothetical protein MGL_3424 [Malassezia globosa CBS 7966]
gi|159103280|gb|EDP42175.1| hypothetical protein MGL_3424 [Malassezia globosa CBS 7966]
Length = 146
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 57/69 (82%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YE+AR+LGTRALQI+M APV+V EGE DPL IA KEL A+KIP+++RRYLPD ++EDW
Sbjct: 78 KYEKARILGTRALQISMNAPVLVPTEGEMDPLAIAQKELLAKKIPLLVRRYLPDGTFEDW 137
Query: 143 GIDELKIID 151
+ EL I D
Sbjct: 138 SVSELIITD 146
>gi|296414634|ref|XP_002837003.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295632851|emb|CAZ81194.1| unnamed protein product [Tuber melanosporum]
Length = 156
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 56/66 (84%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERARVLGTRALQI+M APV+V+ GETDPL IA+KEL+ +KIP+++RRYLPD YED
Sbjct: 90 TKYERARVLGTRALQISMNAPVLVDTGGETDPLLIALKELQEKKIPLVVRRYLPDGYYED 149
Query: 142 WGIDEL 147
W DEL
Sbjct: 150 WTCDEL 155
>gi|160331075|ref|XP_001712245.1| rpabc6 [Hemiselmis andersenii]
gi|159765692|gb|ABW97920.1| rpabc6 [Hemiselmis andersenii]
Length = 137
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 70/97 (72%), Gaps = 4/97 (4%)
Query: 57 LILNHYMKVKSKNQIKNNNKLNIKQI----RYERARVLGTRALQIAMCAPVMVELEGETD 112
L+ N+Y K KNQ + ++ K + +YE+AR+LG RALQI+M AP+M+E+EGETD
Sbjct: 40 LMENNYFKNFLKNQEETLSQDKRKTLPFLTKYEKARILGARALQISMGAPLMIEIEGETD 99
Query: 113 PLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKI 149
L IA KEL RKIPI +RRYLP+ ++EDW +DEL I
Sbjct: 100 ALDIAAKELLKRKIPITLRRYLPNGTFEDWDLDELII 136
>gi|340053373|emb|CCC47662.1| putative DNA-directed RNA polymerase subunit [Trypanosoma vivax
Y486]
Length = 141
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 56/67 (83%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+M APV+V LEGETDPL IA KEL+ IP+I+RR LPDN+YEDW
Sbjct: 62 KYERARVLGTRALQISMNAPVLVALEGETDPLTIAQKELREGVIPLIVRRVLPDNTYEDW 121
Query: 143 GIDELKI 149
I EL +
Sbjct: 122 RICELDV 128
>gi|294900079|ref|XP_002776889.1| DNA-directed RNA polymerase subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239884090|gb|EER08705.1| DNA-directed RNA polymerase subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 138
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 56/65 (86%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR++GTRALQI+M APVMV+ EGETDP+ IA KEL A+ IP I+RR+LPD +YEDW
Sbjct: 70 KYERARIIGTRALQISMNAPVMVDTEGETDPMAIAEKELVAKVIPFIVRRFLPDGTYEDW 129
Query: 143 GIDEL 147
++EL
Sbjct: 130 KVEEL 134
>gi|449016320|dbj|BAM79722.1| RNA polymerase I, II, III common subunit [Cyanidioschyzon merolae
strain 10D]
Length = 166
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Query: 67 SKNQIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARK 125
SK+Q N++ + +YERARVLG RALQI++ APV+V+LEGE+DPL IA KEL+A+K
Sbjct: 82 SKDQSDLKNRVTTPFLTKYERARVLGARALQISLGAPVLVDLEGESDPLLIAEKELRAKK 141
Query: 126 IPIIIRRYLPDNSYEDWGIDEL 147
IP+ IRR+LP+ +YEDW ++EL
Sbjct: 142 IPLKIRRHLPNGAYEDWSVNEL 163
>gi|72388150|ref|XP_844499.1| DNA-directed RNA polymerase subunit [Trypanosoma brucei TREU927]
gi|72388154|ref|XP_844501.1| DNA-directed RNA polymerase subunit [Trypanosoma brucei TREU927]
gi|62358750|gb|AAX79204.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei]
gi|62358752|gb|AAX79206.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei]
gi|70801032|gb|AAZ10940.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|70801034|gb|AAZ10942.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|90954541|emb|CAJ44465.1| RNA polymerase subunit 2RPB6 [Trypanosoma brucei brucei]
gi|261327672|emb|CBH10649.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei
gambiense DAL972]
Length = 144
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 56/67 (83%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V LEGETDPL IA KEL+ IP+IIRR LPDN+YEDW
Sbjct: 65 KYERARILGTRALQISMNAPVLVALEGETDPLTIAQKELREGVIPLIIRRVLPDNTYEDW 124
Query: 143 GIDELKI 149
I EL +
Sbjct: 125 RICELDV 131
>gi|261327674|emb|CBH10651.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei
gambiense DAL972]
Length = 144
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 56/67 (83%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V LEGETDPL IA KEL+ IP+IIRR LPDN+YEDW
Sbjct: 65 KYERARILGTRALQISMNAPVLVALEGETDPLTIAQKELREGVIPLIIRRVLPDNTYEDW 124
Query: 143 GIDELKI 149
I EL +
Sbjct: 125 RICELDV 131
>gi|343476703|emb|CCD12275.1| hypothetical protein, unlikely [Trypanosoma congolense IL3000]
gi|343476704|emb|CCD12276.1| hypothetical protein, unlikely [Trypanosoma congolense IL3000]
Length = 144
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 77/134 (57%), Gaps = 14/134 (10%)
Query: 19 GWAFTLLLDENAPTPSKANKWMGDLN---LILGIKGERALVLILNHYMKVKSKNQIKNNN 75
G +L + + T S+++ D ++ G+ G R + +V S K
Sbjct: 9 GDRLSLSIGDEQETVSRSDDEQSDAGAGVIVSGVAGGRGAAKRRDDGDRVTSPVLTK--- 65
Query: 76 KLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 135
YERAR+LGTRALQI+M APV+V LEGETDPL IA KEL+ IP+IIRR LP
Sbjct: 66 --------YERARILGTRALQISMNAPVLVALEGETDPLIIAQKELREGVIPLIIRRVLP 117
Query: 136 DNSYEDWGIDELKI 149
DN+YEDW I EL +
Sbjct: 118 DNTYEDWRICELDV 131
>gi|169595038|ref|XP_001790943.1| hypothetical protein SNOG_00252 [Phaeosphaeria nodorum SN15]
gi|111070627|gb|EAT91747.1| hypothetical protein SNOG_00252 [Phaeosphaeria nodorum SN15]
Length = 161
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 59/82 (71%)
Query: 66 KSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARK 125
K K N +YERARVLGTRALQI+ APV++++EG TDPLQIA KEL+ +K
Sbjct: 78 KDKKVAPENRTTTPYMTKYERARVLGTRALQISGNAPVLIDVEGMTDPLQIAAKELQEKK 137
Query: 126 IPIIIRRYLPDNSYEDWGIDEL 147
IP+++RRYLPD YEDW +EL
Sbjct: 138 IPLVVRRYLPDGFYEDWTCEEL 159
>gi|71400730|ref|XP_803144.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|71411599|ref|XP_808042.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|71411605|ref|XP_808045.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|71411609|ref|XP_808047.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|70865825|gb|EAN81698.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
gi|70872164|gb|EAN86191.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
gi|70872167|gb|EAN86194.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
gi|70872169|gb|EAN86196.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
Length = 144
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 64/89 (71%), Gaps = 3/89 (3%)
Query: 64 KVKSKNQIKNNNKLNIKQ---IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKE 120
+ S + ++ + K + +YERAR+LGTRALQI+M APV+V LEGETDPL IA KE
Sbjct: 43 RAASGSAVRRDGKDRVTAPVLTKYERARILGTRALQISMNAPVLVALEGETDPLIIAQKE 102
Query: 121 LKARKIPIIIRRYLPDNSYEDWGIDELKI 149
L+ IP+I+RR LPDN+YEDW I EL I
Sbjct: 103 LREGVIPLIVRRVLPDNTYEDWRICELDI 131
>gi|341888878|gb|EGT44813.1| hypothetical protein CAEBREN_14268 [Caenorhabditis brenneri]
Length = 136
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/69 (81%), Positives = 62/69 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAM APVMVELEGETDPL+IA KELK R+IPIIIRRYLPD SYEDW
Sbjct: 67 KYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIIRRYLPDGSYEDW 126
Query: 143 GIDELKIID 151
D+L++ D
Sbjct: 127 STDQLQLAD 135
>gi|71407638|ref|XP_806275.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|71423247|ref|XP_812392.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|71423251|ref|XP_812394.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|70869970|gb|EAN84424.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
gi|70877167|gb|EAN90541.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
gi|70877169|gb|EAN90543.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
Length = 144
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 56/67 (83%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV+V LEGETDPL IA KEL+ IP+I+RR LPDN+YEDW
Sbjct: 65 KYERARILGTRALQISMNAPVLVALEGETDPLIIAQKELREGVIPLIVRRVLPDNTYEDW 124
Query: 143 GIDELKI 149
I EL I
Sbjct: 125 RICELDI 131
>gi|396469030|ref|XP_003838317.1| hypothetical protein LEMA_P118410.1 [Leptosphaeria maculans JN3]
gi|312214884|emb|CBX94838.1| hypothetical protein LEMA_P118410.1 [Leptosphaeria maculans JN3]
Length = 175
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 56/65 (86%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQI+ APV++++EG TDPLQIA KEL+ +KIP+++RRYLPD YEDW
Sbjct: 109 KYERARVLGTRALQISGNAPVLIDVEGMTDPLQIAAKELQEKKIPLVVRRYLPDGFYEDW 168
Query: 143 GIDEL 147
+EL
Sbjct: 169 TCEEL 173
>gi|388580341|gb|EIM20656.1| RNA polymerase Rpb6 [Wallemia sebi CBS 633.66]
Length = 90
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 57/66 (86%), Gaps = 1/66 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE-GETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERAR+LGTRALQI+M APV+V +E GE+DPLQIA+KEL + K+P+I+RRYLPD S+ED
Sbjct: 22 KYERARILGTRALQISMNAPVLVPIEVGESDPLQIAIKELSSNKVPLIVRRYLPDGSFED 81
Query: 142 WGIDEL 147
W EL
Sbjct: 82 WKCQEL 87
>gi|399949803|gb|AFP65460.1| DNA-directed RNA polymerase I, II, and III 15kDa polypeptide
[Chroomonas mesostigmatica CCMP1168]
Length = 133
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 57/69 (82%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YE+AR+LG RALQ++M AP+M+E EGETD L IA KEL RKIPI IRRYLPD ++EDW
Sbjct: 66 KYEKARILGARALQLSMGAPLMIETEGETDALDIAAKELLKRKIPISIRRYLPDGTFEDW 125
Query: 143 GIDELKIID 151
++EL IID
Sbjct: 126 LLNEL-IID 133
>gi|451997265|gb|EMD89730.1| hypothetical protein COCHEDRAFT_1105445 [Cochliobolus
heterostrophus C5]
Length = 125
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 56/65 (86%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YE+ARVLGTRALQI+ APV++++EG TDPLQIA KEL+ +KIP+++RRYLPD YEDW
Sbjct: 59 KYEKARVLGTRALQISGNAPVLIDVEGMTDPLQIAAKELQEKKIPLVVRRYLPDGFYEDW 118
Query: 143 GIDEL 147
+EL
Sbjct: 119 TCEEL 123
>gi|451852409|gb|EMD65704.1| hypothetical protein COCSADRAFT_87368 [Cochliobolus sativus ND90Pr]
Length = 124
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 56/65 (86%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YE+ARVLGTRALQI+ APV++++EG TDPLQIA KEL+ +KIP+++RRYLPD YEDW
Sbjct: 58 KYEKARVLGTRALQISGNAPVLIDVEGMTDPLQIAAKELQEKKIPLVVRRYLPDGFYEDW 117
Query: 143 GIDEL 147
+EL
Sbjct: 118 TCEEL 122
>gi|209879453|ref|XP_002141167.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Cryptosporidium muris RN66]
gi|209556773|gb|EEA06818.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2,
putative [Cryptosporidium muris RN66]
Length = 132
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 56/65 (86%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
++E+AR++GTRALQI+M APV + L+GETDPL IA KEL A+KIP IIRRYLP+ +YEDW
Sbjct: 65 KFEKARIIGTRALQISMNAPVAIPLDGETDPLIIAEKELYAKKIPFIIRRYLPNGNYEDW 124
Query: 143 GIDEL 147
IDEL
Sbjct: 125 KIDEL 129
>gi|189201986|ref|XP_001937329.1| DNA-directed RNA polymerases I [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187984428|gb|EDU49916.1| DNA-directed RNA polymerases I [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 163
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 56/65 (86%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YE+ARVLGTRALQI+ APV++++EG TDPLQIA KEL+ +KIP+++RRYLPD YEDW
Sbjct: 97 KYEKARVLGTRALQISGNAPVLIDVEGMTDPLQIAAKELQEKKIPLVVRRYLPDGFYEDW 156
Query: 143 GIDEL 147
+EL
Sbjct: 157 TCEEL 161
>gi|330923427|ref|XP_003300236.1| hypothetical protein PTT_11419 [Pyrenophora teres f. teres 0-1]
gi|311325727|gb|EFQ91661.1| hypothetical protein PTT_11419 [Pyrenophora teres f. teres 0-1]
Length = 163
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 56/65 (86%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YE+ARVLGTRALQI+ APV++++EG TDPLQIA KEL+ +KIP+++RRYLPD YEDW
Sbjct: 97 KYEKARVLGTRALQISGNAPVLIDVEGMTDPLQIAAKELQEKKIPLVVRRYLPDGFYEDW 156
Query: 143 GIDEL 147
+EL
Sbjct: 157 TCEEL 161
>gi|67478192|ref|XP_654512.1| DNA-directed RNA polymerases I, II, and III 23 kDa [Entamoeba
histolytica HM-1:IMSS]
gi|56471574|gb|EAL49133.1| DNA-directed RNA polymerases I, II, and III 23 kDa, putative
[Entamoeba histolytica HM-1:IMSS]
gi|449704784|gb|EMD44960.1| DNA-directed RNA polymerases I II and III 23 kDa, putative
[Entamoeba histolytica KU27]
Length = 122
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 67/97 (69%), Gaps = 6/97 (6%)
Query: 57 LILNHYMKVKSKN-----QIKNNNKLNIK-QIRYERARVLGTRALQIAMCAPVMVELEGE 110
L++++Y + N +IK +++ + +YE+ARVLGTRALQI+M APV V L G
Sbjct: 23 LVIDYYDDLGVDNYIEEKEIKGDDRTTTRFMTKYEKARVLGTRALQISMNAPVFVPLNGM 82
Query: 111 TDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDEL 147
TD L+IAM ELKA KIP IIRR LP+ SYEDW + EL
Sbjct: 83 TDALEIAMAELKAGKIPFIIRRRLPNGSYEDWKVSEL 119
>gi|67524579|ref|XP_660351.1| hypothetical protein AN2747.2 [Aspergillus nidulans FGSC A4]
gi|40743999|gb|EAA63181.1| hypothetical protein AN2747.2 [Aspergillus nidulans FGSC A4]
gi|259486339|tpe|CBF84098.1| TPA: DNA-directed RNA polymerase I, II, and III subunit Rpb6
(AFU_orthologue; AFUA_1G05160) [Aspergillus nidulans
FGSC A4]
Length = 198
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 60/75 (80%), Gaps = 1/75 (1%)
Query: 70 QIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPI 128
+I N+ + + +YERARVLGTRALQI++ APV+V+LEGETDPLQIAMKEL +KIP+
Sbjct: 80 KIPNDQRTTTPYMTKYERARVLGTRALQISLNAPVLVDLEGETDPLQIAMKELAQKKIPL 139
Query: 129 IIRRYLPDNSYEDWG 143
I+RRYLPD + +G
Sbjct: 140 IVRRYLPDGTEAAYG 154
>gi|361126023|gb|EHK98039.1| putative DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Glarea lozoyensis 74030]
Length = 150
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/55 (76%), Positives = 52/55 (94%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 136
+YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KE+K RKIP+I+RRY+PD
Sbjct: 95 TKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKEMKERKIPLIVRRYMPD 149
>gi|308509118|ref|XP_003116742.1| CRE-RPB-6 protein [Caenorhabditis remanei]
gi|308241656|gb|EFO85608.1| CRE-RPB-6 protein [Caenorhabditis remanei]
Length = 137
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 62/69 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAM APVMVELEGETDPL+IA KELK R+IPIIIRRYLPD SYEDW
Sbjct: 68 KYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIIRRYLPDGSYEDW 127
Query: 143 GIDELKIID 151
++L++ D
Sbjct: 128 PTEQLQLAD 136
>gi|66363316|ref|XP_628624.1| DNA-directed RNA polymerase subunit [Cryptosporidium parvum Iowa
II]
gi|67621068|ref|XP_667745.1| DNA-directed RNA polymerase IIa [Cryptosporidium hominis TU502]
gi|46229627|gb|EAK90445.1| DNA-directed RNA polymerase subunit [Cryptosporidium parvum Iowa
II]
gi|54658913|gb|EAL37521.1| DNA-directed RNA polymerase IIa [Cryptosporidium hominis]
Length = 129
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 55/65 (84%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
++E+AR++GTRALQI+M APV + L+GETDPL IA KEL +KIP +IRRYLP+ +YEDW
Sbjct: 62 KFEKARIIGTRALQISMNAPVAIPLDGETDPLLIAEKELYTKKIPFVIRRYLPNGNYEDW 121
Query: 143 GIDEL 147
IDEL
Sbjct: 122 KIDEL 126
>gi|300120817|emb|CBK21059.2| unnamed protein product [Blastocystis hominis]
Length = 82
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 56/65 (86%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQ++M AP MVE+ G+TD LQIA++EL+ +KIP+IIRR+LP +EDW
Sbjct: 15 KYERARILGTRALQLSMNAPPMVEVNGQTDTLQIALEELRQKKIPLIIRRFLPSGKFEDW 74
Query: 143 GIDEL 147
+DEL
Sbjct: 75 RLDEL 79
>gi|407042313|gb|EKE41265.1| RNA polymerases K / 14 to 18 kDa subunit domain containing protein
[Entamoeba nuttalli P19]
Length = 122
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 67/97 (69%), Gaps = 6/97 (6%)
Query: 57 LILNHYMKVKSKN-----QIKNNNKLNIK-QIRYERARVLGTRALQIAMCAPVMVELEGE 110
L++++Y + N +IK +++ + +YE+ARVLGTRALQI+M APV V L G
Sbjct: 23 LVIDYYDDLGVDNYIEEKEIKGDDRTTTRFMTKYEKARVLGTRALQISMNAPVFVPLNGM 82
Query: 111 TDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDEL 147
TD L+IAM ELKA KIP IIRR LP+ S+EDW + EL
Sbjct: 83 TDALEIAMAELKAGKIPFIIRRRLPNGSFEDWKVSEL 119
>gi|167390225|ref|XP_001739254.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Entamoeba dispar SAW760]
gi|167394897|ref|XP_001741144.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Entamoeba dispar SAW760]
gi|165894406|gb|EDR22407.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2,
putative [Entamoeba dispar SAW760]
gi|165897105|gb|EDR24371.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2,
putative [Entamoeba dispar SAW760]
Length = 122
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 67/97 (69%), Gaps = 6/97 (6%)
Query: 57 LILNHYMKVKSKN-----QIKNNNKLNIK-QIRYERARVLGTRALQIAMCAPVMVELEGE 110
L++++Y + N +IK +++ + +YE+ARVLGTRALQI+M APV V L G
Sbjct: 23 LVIDYYDDLGVDNYIEEKEIKGDDRTTTRFMTKYEKARVLGTRALQISMNAPVFVPLNGM 82
Query: 111 TDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDEL 147
TD L+IAM ELKA KIP IIRR LP+ S+EDW + EL
Sbjct: 83 TDALEIAMAELKAGKIPFIIRRRLPNGSFEDWKVSEL 119
>gi|428176217|gb|EKX45103.1| hypothetical protein GUITHDRAFT_71663 [Guillardia theta CCMP2712]
Length = 94
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEG-ETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERARVLGTRALQI+M APV+ + G E+DPL+IAMKELK KIP +IRRYLPD S+ED
Sbjct: 26 KYERARVLGTRALQISMNAPVLTSVPGSESDPLRIAMKELKDGKIPFVIRRYLPDGSFED 85
Query: 142 WGIDEL 147
W I +L
Sbjct: 86 WPIADL 91
>gi|322694964|gb|EFY86781.1| DNA-directed RNA polymerases I [Metarhizium acridum CQMa 102]
Length = 141
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/54 (77%), Positives = 52/54 (96%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 136
+YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRYLPD
Sbjct: 87 KYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYLPD 140
>gi|171686806|ref|XP_001908344.1| hypothetical protein [Podospora anserina S mat+]
gi|170943364|emb|CAP69017.1| unnamed protein product [Podospora anserina S mat+]
Length = 153
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 53/57 (92%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNS 138
+YE+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+PD S
Sbjct: 85 TKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPDGS 141
>gi|358392032|gb|EHK41436.1| hypothetical protein TRIATDRAFT_77949 [Trichoderma atroviride IMI
206040]
Length = 126
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 52/54 (96%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 136
+YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+PD
Sbjct: 72 KYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPD 125
>gi|358377941|gb|EHK15624.1| hypothetical protein TRIVIDRAFT_164408 [Trichoderma virens Gv29-8]
Length = 140
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 52/54 (96%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 136
+YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+PD
Sbjct: 86 KYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPD 139
>gi|429964663|gb|ELA46661.1| hypothetical protein VCUG_01887 [Vavraia culicis 'floridensis']
Length = 119
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 54/65 (83%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YE+ R++G RA+Q++M AP +VE+EGETD L+IA KE ARKIP I+RR LPDN+YEDW
Sbjct: 39 KYEKTRIIGMRAMQLSMNAPPLVEIEGETDALRIAEKEFYARKIPFIVRRRLPDNTYEDW 98
Query: 143 GIDEL 147
I+EL
Sbjct: 99 SINEL 103
>gi|322705854|gb|EFY97437.1| DNA-directed RNA polymerases I [Metarhizium anisopliae ARSEF 23]
Length = 141
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 52/54 (96%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 136
+YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+PD
Sbjct: 87 KYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPD 140
>gi|384493789|gb|EIE84280.1| hypothetical protein RO3G_08990 [Rhizopus delemar RA 99-880]
Length = 155
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 70/102 (68%), Gaps = 9/102 (8%)
Query: 58 ILNHYMKVKSKNQIKNNNKLNIKQIR--------YERARVLGTRALQIAMCAPVMVELEG 109
ILN M ++ Q + + N + R YERARVLGTRALQI++ +PVM+EL G
Sbjct: 55 ILNDVMSGGNRRQREQSPDPNERTERLTTPYMTKYERARVLGTRALQISLNSPVMIELNG 114
Query: 110 ETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 151
ETD L IA +EL+ +++P+IIRRY+PD +YEDW + +L I+D
Sbjct: 115 ETDALVIANRELREKRLPLIIRRYMPDGTYEDWKVRDL-IVD 155
>gi|46124611|ref|XP_386859.1| hypothetical protein FG06683.1 [Gibberella zeae PH-1]
Length = 139
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/54 (74%), Positives = 52/54 (96%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 136
+YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KE++ +KIP+I+RRY+PD
Sbjct: 85 KYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKEMREKKIPLIVRRYMPD 138
>gi|237832893|ref|XP_002365744.1| RNA polymerase II subunit RPB6, putative [Toxoplasma gondii ME49]
gi|211963408|gb|EEA98603.1| RNA polymerase II subunit RPB6, putative [Toxoplasma gondii ME49]
gi|221488202|gb|EEE26416.1| conserved hypothetical protein [Toxoplasma gondii GT1]
gi|221508714|gb|EEE34283.1| DNA-directed RNA polymerase IIB, putative [Toxoplasma gondii VEG]
Length = 146
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 55/69 (79%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
++E+ARV+GTRALQI+M AP+ + L+GETDPL IA KEL + IP IRRYLPD SYEDW
Sbjct: 79 KFEKARVIGTRALQISMNAPITIPLDGETDPLIIAEKELYQKTIPFTIRRYLPDGSYEDW 138
Query: 143 GIDELKIID 151
I EL I+D
Sbjct: 139 KIQEL-IVD 146
>gi|401408805|ref|XP_003883851.1| Polymerase (RNA) II (DNA directed) polypeptide F,related [Neospora
caninum Liverpool]
gi|325118268|emb|CBZ53819.1| Polymerase (RNA) II (DNA directed) polypeptide F,related [Neospora
caninum Liverpool]
Length = 146
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 55/69 (79%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
++E+ARV+GTRALQI+M AP+ + L+GETDPL IA KEL + IP IRRYLPD SYEDW
Sbjct: 79 KFEKARVIGTRALQISMNAPITIPLDGETDPLIIAEKELYQKTIPFTIRRYLPDGSYEDW 138
Query: 143 GIDELKIID 151
I EL I+D
Sbjct: 139 KIQEL-IVD 146
>gi|159484600|ref|XP_001700342.1| subunit of DNA-directed RNA polymerase [Chlamydomonas reinhardtii]
gi|158272383|gb|EDO98184.1| subunit of DNA-directed RNA polymerase [Chlamydomonas reinhardtii]
Length = 87
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/54 (77%), Positives = 49/54 (90%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 136
+YE+ARVLGTRALQI+M APVMVEL GETDPL+IAMKEL+ +K+P IRRYLPD
Sbjct: 34 KYEKARVLGTRALQISMNAPVMVELSGETDPLEIAMKELREKKVPFTIRRYLPD 87
>gi|428174548|gb|EKX43443.1| hypothetical protein GUITHDRAFT_73062 [Guillardia theta CCMP2712]
Length = 95
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 54/67 (80%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YER R+LG RALQI+M APVMV ++ ETDPL+IA KEL A K+P IIRR+LP+ S EDW
Sbjct: 19 KYERTRILGIRALQISMNAPVMVPVDKETDPLKIATKELIAGKVPFIIRRHLPNGSSEDW 78
Query: 143 GIDELKI 149
++EL I
Sbjct: 79 AVNELII 85
>gi|440494018|gb|ELQ76432.1| RNA polymerase subunit K [Trachipleistophora hominis]
Length = 119
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 53/65 (81%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YE+ R++G RA+Q++M AP +VE+E ETD L+IA KE ARKIP I+RR LPDN+YEDW
Sbjct: 39 KYEKTRIIGMRAMQLSMNAPPLVEIEAETDALRIAEKEFYARKIPFIVRRRLPDNTYEDW 98
Query: 143 GIDEL 147
++EL
Sbjct: 99 NVNEL 103
>gi|240279812|gb|EER43317.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus H143]
Length = 159
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 54/66 (81%), Gaps = 6/66 (9%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+I+RR YED
Sbjct: 99 TKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELAQKKIPLIVRR------YED 152
Query: 142 WGIDEL 147
W +EL
Sbjct: 153 WTCEEL 158
>gi|225562993|gb|EEH11272.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus G186AR]
Length = 159
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 54/66 (81%), Gaps = 6/66 (9%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+I+RR YED
Sbjct: 99 TKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELAQKKIPLIVRR------YED 152
Query: 142 WGIDEL 147
W +EL
Sbjct: 153 WTCEEL 158
>gi|357017613|gb|AET50835.1| hypothetical protein [Eimeria tenella]
Length = 143
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 54/68 (79%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
++E+ARV+GTRALQ+++ AP+ V EGETDPL +A KEL+ + +P IRRYLPD S+ED
Sbjct: 75 TKFEKARVVGTRALQLSLSAPLTVSAEGETDPLLLAEKELRQKTLPFRIRRYLPDGSFED 134
Query: 142 WGIDELKI 149
W +DEL I
Sbjct: 135 WRLDELLI 142
>gi|29841200|gb|AAP06213.1| similar to NM_080171 RNA polymerase II 18kD subunit in Drosophila
melanogaster [Schistosoma japonicum]
Length = 123
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/54 (77%), Positives = 49/54 (90%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 136
+YERARVLG RALQ++M APVMVEL+GE DPL+IA KEL+A KIPIIIRR+LPD
Sbjct: 67 KYERARVLGARALQLSMSAPVMVELDGERDPLKIAEKELRANKIPIIIRRFLPD 120
>gi|403354386|gb|EJY76747.1| DNA-directed RNA polymerase, subunit K/omega [Oxytricha trifallax]
Length = 134
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVE-LEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 140
+YE+ARVLGTRALQI+ AP+M++ + GE DP ++A +EL RKIP IIRRYLPD +YE
Sbjct: 66 TKYEKARVLGTRALQISKNAPLMIQPMPGEHDPYKLAERELNERKIPFIIRRYLPDGTYE 125
Query: 141 DWGIDEL 147
DW + EL
Sbjct: 126 DWKLSEL 132
>gi|118402103|ref|XP_001033371.1| RNA polymerases K / 14 to 18 kDa subunit family protein
[Tetrahymena thermophila]
gi|89287719|gb|EAR85708.1| RNA polymerases K / 14 to 18 kDa subunit family protein
[Tetrahymena thermophila SB210]
Length = 163
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEG-ETDPLQIAMKELKARKIPIIIRRYLPDNSYE 140
+YE+AR++GTRALQIA +P+ VE + + DP+ IA KE +KIP IIRRYLP+ YE
Sbjct: 93 TKYEKARIIGTRALQIAQNSPIYVETDDKDYDPIAIAEKEFVQKKIPFIIRRYLPNKEYE 152
Query: 141 DWGIDELKIID 151
DW +DEL+++D
Sbjct: 153 DWALDELEVLD 163
>gi|162606202|ref|XP_001713616.1| DNA-DIRECTED RNA POLYMERASES I, II, AND III 15 KD
POLYPEPTIDE(RPABC6) [Guillardia theta]
gi|13794536|gb|AAK39911.1|AF165818_119 DNA-DIRECTED RNA POLYMERASES I, II, AND III 15 KD
POLYPEPTIDE(RPABC6) [Guillardia theta]
Length = 126
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 60/88 (68%), Gaps = 7/88 (7%)
Query: 67 SKNQIKNNNKLNIK-------QIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMK 119
++N K N+KL+I +YE+AR+LG RALQI+M AP++ E+ +D L IA K
Sbjct: 36 NENIFKMNDKLDIDFRMTLPILTKYEKARILGARALQISMGAPILTEVNTLSDSLDIASK 95
Query: 120 ELKARKIPIIIRRYLPDNSYEDWGIDEL 147
EL RKIPI IRRYLP+ YEDW I+EL
Sbjct: 96 ELYERKIPITIRRYLPNGRYEDWKIEEL 123
>gi|115388511|ref|XP_001211761.1| DNA-directed RNA polymerases I [Aspergillus terreus NIH2624]
gi|114195845|gb|EAU37545.1| DNA-directed RNA polymerases I [Aspergillus terreus NIH2624]
Length = 163
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 61/88 (69%), Gaps = 3/88 (3%)
Query: 63 MKVKSKNQIKNNNKLNIKQI-RYERARVLGTRALQIA--MCAPVMVELEGETDPLQIAMK 119
M+ + ++ N+ + + +YERAR+ G L A M APV+V+LEGETDPLQIA+K
Sbjct: 75 MEQTREKKVPNDQRTTTPYMTKYERARLFGGFILTGAASMNAPVLVDLEGETDPLQIAIK 134
Query: 120 ELKARKIPIIIRRYLPDNSYEDWGIDEL 147
EL +KIP+I+RRYLPD YEDW +EL
Sbjct: 135 ELNQKKIPLIVRRYLPDGYYEDWTCEEL 162
>gi|145506493|ref|XP_001439207.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406391|emb|CAK71810.1| unnamed protein product [Paramecium tetraurelia]
Length = 156
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 54/69 (78%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARV+GTRALQI+ +P+ V+ + TDP+Q+A +EL KIP IIRRYLP+ ++EDW
Sbjct: 88 KYERARVIGTRALQISKNSPIYVDPKETTDPIQVAQQELNENKIPFIIRRYLPNGNFEDW 147
Query: 143 GIDELKIID 151
+ EL+ +D
Sbjct: 148 ELQELERLD 156
>gi|340503407|gb|EGR30001.1| RNA polymerases k subunit family protein, putative
[Ichthyophthirius multifiliis]
Length = 159
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 55/70 (78%), Gaps = 1/70 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVEL-EGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YE+AR++GTRALQIA +P+ V+ E + DP+ IA KE +KIP IIRRYLP+ SYED
Sbjct: 90 KYEKARIIGTRALQIAQNSPIYVDTDEKDYDPIAIAEKEFVQKKIPFIIRRYLPNKSYED 149
Query: 142 WGIDELKIID 151
W +D+L+++D
Sbjct: 150 WPLDQLEVLD 159
>gi|330040364|ref|XP_003239876.1| DNA-directed RNA polymerase I, II, and III 15kDa polypeptide
[Cryptomonas paramecium]
gi|327206801|gb|AEA38978.1| DNA-directed RNA polymerase I, II, and III 15kDa polypeptide
[Cryptomonas paramecium]
Length = 130
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 52/67 (77%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
++E+AR+LG RALQ++M AP+ ++ ETD L++A KEL RKIPI IRRYLP+ YEDW
Sbjct: 63 KFEKARILGARALQLSMGAPLTIKTNSETDVLELAAKELVERKIPITIRRYLPNGKYEDW 122
Query: 143 GIDELKI 149
+DEL I
Sbjct: 123 RVDELII 129
>gi|387594090|gb|EIJ89114.1| hypothetical protein NEQG_00933 [Nematocida parisii ERTm3]
gi|387595709|gb|EIJ93332.1| hypothetical protein NEPG_01674 [Nematocida parisii ERTm1]
Length = 122
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 51/65 (78%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
++ERA++LG RA QI+M AP+MVE ETDP++IA KELK +K P+I+ R LPDN+YE W
Sbjct: 53 KFERAKILGIRAQQISMSAPIMVEYGDETDPVEIAKKELKEKKTPLIVLRRLPDNTYEKW 112
Query: 143 GIDEL 147
+ +L
Sbjct: 113 AVKDL 117
>gi|378756013|gb|EHY66038.1| DNA-directed RNA polymerase [Nematocida sp. 1 ERTm2]
Length = 122
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 51/65 (78%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
++ERA++LG RA QI+M AP+MVE ETDP++IA KELK +K P+I+ R LPDN+YE W
Sbjct: 53 KFERAKILGIRAQQISMSAPIMVEYGDETDPVEIAKKELKEKKTPLIVLRRLPDNTYEKW 112
Query: 143 GIDEL 147
+ +L
Sbjct: 113 AVKDL 117
>gi|401827236|ref|XP_003887710.1| DNA-directed RNA polymerase [Encephalitozoon hellem ATCC 50504]
gi|392998717|gb|AFM98729.1| DNA-directed RNA polymerase [Encephalitozoon hellem ATCC 50504]
Length = 116
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 70 QIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPI 128
+IKN+ + + ++ +YE+A V+G RA Q++ AP V++ E++PL IA EL +KIP
Sbjct: 30 KIKNSQRKTLPRMTKYEKAHVIGVRASQLSAGAPPFVDIGNESNPLSIANMELNEKKIPF 89
Query: 129 IIRRYLPDNSYEDWGIDELKI 149
IIRR LPDNS+EDW IDEL I
Sbjct: 90 IIRRRLPDNSFEDWAIDELMI 110
>gi|123504313|ref|XP_001328715.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Trichomonas vaginalis G3]
gi|121911662|gb|EAY16492.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative [Trichomonas vaginalis G3]
Length = 94
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 53/70 (75%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YE+ARVLG RA+QIA APV +++ E DPL IA +ELK +K P+IIRR LPD +YED
Sbjct: 21 KYEKARVLGIRAMQIANGAPVQIDIGSEVDPLNIAEEELKQKKTPLIIRRTLPDGTYEDV 80
Query: 143 GIDELKIIDR 152
++EL +I+
Sbjct: 81 AVNELIVINE 90
>gi|123487982|ref|XP_001325065.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Trichomonas vaginalis G3]
gi|121907958|gb|EAY12842.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative [Trichomonas vaginalis G3]
Length = 94
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 53/70 (75%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YE+ARVLG RA+QIA APV +++ E DPL IA +ELK +K P+IIRR LPD +YED
Sbjct: 21 KYEKARVLGIRAMQIANGAPVQIDIGSEVDPLNIAEEELKQKKTPLIIRRTLPDGTYEDV 80
Query: 143 GIDELKIIDR 152
++EL +I+
Sbjct: 81 AVNELIVINE 90
>gi|296004344|ref|XP_001351108.2| DNA-directed RNA polymerase subunit I, putative [Plasmodium
falciparum 3D7]
gi|225685549|emb|CAB10577.2| DNA-directed RNA polymerase subunit I, putative [Plasmodium
falciparum 3D7]
Length = 153
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 74/126 (58%), Gaps = 23/126 (18%)
Query: 48 GIKGERALVLILNHYMKVKSKNQIKNN--NKLNIK-----QIRYERARVLGTRALQIAMC 100
G E + +I +H +K +K+ +N+ N+ NI+ +YE+AR++GTRALQI+M
Sbjct: 29 GENYENDIDIITDHQIKKDNKSDYENSEANEDNIRITSPYLTKYEKARIIGTRALQISMN 88
Query: 101 APVMVELEGETD---------------PLQIAMKELKARKIPIIIRRYLPDNSYEDWGID 145
AP+ + +E D PL IA KEL + IP I+RRYLP+ SYEDW +D
Sbjct: 89 APLTIPIETSNDMINSKNEYDNYLNNDPLVIAEKELYNKSIPFILRRYLPNGSYEDWRLD 148
Query: 146 ELKIID 151
EL IID
Sbjct: 149 EL-IID 153
>gi|396081832|gb|AFN83446.1| DNA-directed RNA polymerase subunit K [Encephalitozoon romaleae
SJ-2008]
Length = 116
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 70 QIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPI 128
QI+ + + + ++ +YE+A V+G RA Q++ AP V++ E++PL IA EL +KIP
Sbjct: 30 QIRGSERKTLPRMTKYEKAHVIGVRASQLSAGAPPFVDIGNESNPLNIANMELNEKKIPF 89
Query: 129 IIRRYLPDNSYEDWGIDELKI 149
IIRR LPDNS+EDW IDEL I
Sbjct: 90 IIRRRLPDNSFEDWAIDELMI 110
>gi|402465615|gb|EJW01347.1| hypothetical protein EDEG_00472 [Edhazardia aedis USNM 41457]
Length = 110
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 64/94 (68%), Gaps = 6/94 (6%)
Query: 58 ILNHYMKVKSKNQIKN--NNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQ 115
I + + K +KN +N++ +YE+A +LG RALQI+M AP +V++E ETDPL+
Sbjct: 18 IFEEPAQAEFKKTVKNITSNRMT----KYEKAHILGIRALQISMGAPPLVDIEYETDPLK 73
Query: 116 IAMKELKARKIPIIIRRYLPDNSYEDWGIDELKI 149
IA+ EL +K+P +RR LPD SYE+W I+E+ I
Sbjct: 74 IALMELNQKKMPFQLRRRLPDASYEEWDINEMII 107
>gi|303390178|ref|XP_003073320.1| DNA-directed RNA polymerase subunit K [Encephalitozoon intestinalis
ATCC 50506]
gi|303302466|gb|ADM11960.1| DNA-directed RNA polymerase subunit K [Encephalitozoon intestinalis
ATCC 50506]
Length = 116
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 50/70 (71%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSY 139
+ +YE+A V+G RA Q++ AP V++ E++PL IA EL +KIP IIRR LPDNS+
Sbjct: 41 RMTKYEKAHVIGVRASQLSAGAPPFVDIGNESNPLAIANMELNEKKIPFIIRRRLPDNSF 100
Query: 140 EDWGIDELKI 149
EDW IDEL I
Sbjct: 101 EDWAIDELMI 110
>gi|19173358|ref|NP_597161.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
Length = 144
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSY 139
+ +YE+A V+G RA Q++ AP V++ ET+PL IA EL +KIP IIRR LPD+S+
Sbjct: 69 RMTKYEKAHVIGVRATQLSAGAPPFVDIGNETNPLNIANMELSEKKIPFIIRRKLPDSSF 128
Query: 140 EDWGIDELKI 149
EDW +DEL I
Sbjct: 129 EDWAVDELMI 138
>gi|449328894|gb|AGE95170.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi]
Length = 144
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSY 139
+ +YE+A V+G RA Q++ AP V++ ET+PL IA EL +KIP IIRR LPD+S+
Sbjct: 69 RMTKYEKAHVIGVRATQLSAGAPPFVDIGNETNPLNIANMELSEKKIPFIIRRKLPDSSF 128
Query: 140 EDWGIDELKI 149
EDW +DEL I
Sbjct: 129 EDWAVDELMI 138
>gi|154280422|ref|XP_001541024.1| DNA-directed RNA polymerases I [Ajellomyces capsulatus NAm1]
gi|150412967|gb|EDN08354.1| DNA-directed RNA polymerases I [Ajellomyces capsulatus NAm1]
Length = 177
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 53/77 (68%), Gaps = 12/77 (15%)
Query: 83 RYERARVLGTRALQI------------AMCAPVMVELEGETDPLQIAMKELKARKIPIII 130
+YERARV T +L +M AP++V+LEGETDPLQIA+KEL +KIP+I+
Sbjct: 100 KYERARVFHTISLSAWRIVSSVLTRVDSMNAPILVDLEGETDPLQIALKELAQKKIPLIV 159
Query: 131 RRYLPDNSYEDWGIDEL 147
RRYLPD YEDW +EL
Sbjct: 160 RRYLPDGWYEDWTCEEL 176
>gi|225715738|gb|ACO13715.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Esox
lucius]
Length = 98
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/40 (97%), Positives = 40/40 (100%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK 122
+YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK 98
>gi|392512790|emb|CAD26337.2| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
Length = 116
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSY 139
+ +YE+A V+G RA Q++ AP V++ ET+PL IA EL +KIP IIRR LPD+S+
Sbjct: 41 RMTKYEKAHVIGVRATQLSAGAPPFVDIGNETNPLNIANMELSEKKIPFIIRRKLPDSSF 100
Query: 140 EDWGIDELKI 149
EDW +DEL I
Sbjct: 101 EDWAVDELMI 110
>gi|302916149|ref|XP_003051885.1| hypothetical protein NECHADRAFT_79417 [Nectria haematococca mpVI
77-13-4]
gi|256732824|gb|EEU46172.1| hypothetical protein NECHADRAFT_79417 [Nectria haematococca mpVI
77-13-4]
Length = 161
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 51/70 (72%), Gaps = 5/70 (7%)
Query: 83 RYERARVLGTRALQIAMC-----APVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 137
+YERAR+LGTRALQI A L GETDPLQIA+KE++ +KIP+I+RRYLPD
Sbjct: 90 KYERARILGTRALQIRFAFLERDASRPGWLTGETDPLQIAIKEMREKKIPLIVRRYLPDG 149
Query: 138 SYEDWGIDEL 147
YEDW +EL
Sbjct: 150 YYEDWTCEEL 159
>gi|443898341|dbj|GAC75676.1| hypothetical protein PANT_18d00010 [Pseudozyma antarctica T-34]
Length = 218
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 44/53 (83%)
Query: 99 MCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 151
M APV+V EGETDPL+IAMKEL A+KIP+++RRYLPD SYEDW + EL + +
Sbjct: 1 MNAPVLVPTEGETDPLEIAMKELAAKKIPLVVRRYLPDGSYEDWTVSELIVTE 53
>gi|145501822|ref|XP_001436891.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404036|emb|CAK69494.1| unnamed protein product [Paramecium tetraurelia]
Length = 156
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 52/69 (75%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARV+GTRALQI+ +P+ V+ + TDP+ +A +EL KIP IIRRY P+ ++EDW
Sbjct: 88 KYERARVIGTRALQISKNSPIYVDPKETTDPILVAQQELNENKIPFIIRRYWPNGNFEDW 147
Query: 143 GIDELKIID 151
+ EL+ +D
Sbjct: 148 ELQELERLD 156
>gi|14578297|gb|AAF99463.1| PV1H14085_P [Plasmodium vivax]
Length = 157
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 69/117 (58%), Gaps = 22/117 (18%)
Query: 56 VLILNHYMKVKSKNQIKNNNKLNIK-----QIRYERARVLGTRALQIAMCAPVMVELE-- 108
++ N K KS + + N+ NI+ +YE+AR++GTRALQI++ AP+ + +E
Sbjct: 42 IITENQIKKEKSDYEHSDVNEDNIRITSPYLTKYEKARIIGTRALQISLNAPLTIPIETQ 101
Query: 109 -GE-------------TDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 151
GE DPL IA KEL + IP I+RRYLP+ SYEDW +DEL IID
Sbjct: 102 GGEVSNGKNEYDNYLNNDPLVIAEKELHNKSIPFILRRYLPNGSYEDWKLDEL-IID 157
>gi|156094035|ref|XP_001613055.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Plasmodium vivax Sal-1]
gi|148801929|gb|EDL43328.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative [Plasmodium vivax]
Length = 153
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 69/117 (58%), Gaps = 22/117 (18%)
Query: 56 VLILNHYMKVKSKNQIKNNNKLNIK-----QIRYERARVLGTRALQIAMCAPVMVELE-- 108
++ N K KS + + N+ NI+ +YE+AR++GTRALQI++ AP+ + +E
Sbjct: 38 IITENQIKKEKSDYEHSDVNEDNIRITSPYLTKYEKARIIGTRALQISLNAPLTIPIETQ 97
Query: 109 -GE-------------TDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 151
GE DPL IA KEL + IP I+RRYLP+ SYEDW +DEL IID
Sbjct: 98 GGEVSNGKNEYDNYLNNDPLVIAEKELHNKSIPFILRRYLPNGSYEDWKLDEL-IID 153
>gi|159113722|ref|XP_001707087.1| DNA-directed RNA polymerase II RPB6 [Giardia lamblia ATCC 50803]
gi|25140279|gb|AAM77737.2|AF510645_1 RNA polymerase II subunit Rpb6 [Giardia intestinalis]
gi|157435189|gb|EDO79413.1| DNA-directed RNA polymerase II RPB6 [Giardia lamblia ATCC 50803]
gi|308159580|gb|EFO62107.1| DNA-directed RNA polymerase II RPB6 [Giardia lamblia P15]
Length = 104
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE---GETDPLQIAMKELKARKIPIIIRRYLPDNSY 139
++E+AR+LGTRA Q++M AP + + G DPL +A +EL IPIIIRR+LPD +Y
Sbjct: 33 KFEQARILGTRAYQLSMGAPAHITITDKGGHLDPLVLARRELANNAIPIIIRRHLPDGTY 92
Query: 140 EDWGIDELKIID 151
EDW + EL IID
Sbjct: 93 EDWKLSELHIID 104
>gi|403223948|dbj|BAM42078.1| RNA polymerase common subunit [Theileria orientalis strain
Shintoku]
Length = 153
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 65/109 (59%), Gaps = 23/109 (21%)
Query: 65 VKSKNQIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETD----------- 112
++ K Q+ + +++ + +YE+AR++GTRALQI++ AP+ + L+G D
Sbjct: 46 IEYKTQVDSAHRITTPYLTKYEKARIIGTRALQISLNAPITIPLDGAADMNEENVASLGD 105
Query: 113 ----------PLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 151
PL IA KEL + IP IIRRYLP+ SYEDW I+EL IID
Sbjct: 106 FGDTQTAAIDPLIIAEKELYQKTIPFIIRRYLPNGSYEDWKIEEL-IID 153
>gi|253742774|gb|EES99463.1| DNA-directed RNA polymerase II RPB6 [Giardia intestinalis ATCC
50581]
Length = 104
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE---GETDPLQIAMKELKARKIPIIIRRYLPDNSY 139
++E+AR+LGTRA Q++M AP + + G DPL +A +EL IPIIIRR+LPD +Y
Sbjct: 33 KFEQARILGTRAYQLSMGAPAHITITDKGGHLDPLVLARRELANNAIPIIIRRHLPDGTY 92
Query: 140 EDWGIDELKIID 151
EDW + EL IID
Sbjct: 93 EDWKLSELHIID 104
>gi|389583563|dbj|GAB66298.1| DNA-directed RNA polymerases I II and III 14.4 kDa polypeptide,
partial [Plasmodium cynomolgi strain B]
Length = 139
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 67/118 (56%), Gaps = 23/118 (19%)
Query: 56 VLILNHYMKVKSKNQIKNNNKLNIK-----QIRYERARVLGTRALQIAMCAPVMVELEGE 110
++ N K KS + + N NI+ +YE+AR++GTRALQI++ AP+ + +E +
Sbjct: 23 IITENQIKKEKSDYEHSDANDDNIRITSPYLTKYEKARIIGTRALQISLNAPLTIPIETQ 82
Query: 111 -----------------TDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 151
DPL IA KEL + IP I+RRYLP+ SYEDW +DEL IID
Sbjct: 83 GGGDVSNGKNEYDNYLNNDPLVIAEKELHNKSIPFILRRYLPNGSYEDWKLDEL-IID 139
>gi|71028906|ref|XP_764096.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351050|gb|EAN31813.1| hypothetical protein TP04_0461 [Theileria parva]
Length = 391
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 22/90 (24%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGET---------------------DPLQIAMKEL 121
+YE+AR++GTRALQI++ AP+ + ++G + DPL IA KEL
Sbjct: 303 KYEKARIIGTRALQISLNAPITIPIDGPSEATDDGFTTLGDFGDTQTTAIDPLIIAEKEL 362
Query: 122 KARKIPIIIRRYLPDNSYEDWGIDELKIID 151
+ +P I+RRYLP+ SYEDW IDEL IID
Sbjct: 363 YQKTVPFIVRRYLPNGSYEDWKIDEL-IID 391
>gi|84996807|ref|XP_953125.1| RNA polymerase common subunit (Rpb6 homologue) [Theileria annulata
strain Ankara]
gi|65304121|emb|CAI76500.1| RNA polymerase common subunit (Rpb6 homologue), putative [Theileria
annulata]
Length = 153
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 23/106 (21%)
Query: 68 KNQIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGET--------------- 111
K Q+ + +++ + +YE+AR++GTRALQI++ AP+ + ++G +
Sbjct: 49 KTQVDSAHRITSPYLTKYEKARIIGTRALQISLNAPITIPIDGPSEANDDGFTTLGDFGD 108
Query: 112 ------DPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 151
DPL IA KEL + +P I+RRYLP+ SYEDW IDEL IID
Sbjct: 109 TQTTAIDPLIIAEKELYQKTVPFIVRRYLPNGSYEDWKIDEL-IID 153
>gi|221055753|ref|XP_002259015.1| dna-directed rna polymerase subunit i [Plasmodium knowlesi strain
H]
gi|193809085|emb|CAQ39788.1| dna-directed rna polymerase subunit i, putative [Plasmodium
knowlesi strain H]
Length = 158
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 68/117 (58%), Gaps = 22/117 (18%)
Query: 56 VLILNHYMKVKSKNQIKNNNKLNIK-----QIRYERARVLGTRALQIAMCAPVMVELEGE 110
++ N K KS + + N+ NI+ +YE+AR++GTRALQI++ AP+ + +E +
Sbjct: 43 IITENQIKKEKSDYEHSDANEDNIRITSPYLTKYEKARIIGTRALQISLNAPLTIPIETQ 102
Query: 111 ----------------TDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 151
DPL IA +EL + IP I+RRYLP+ SYEDW +DEL IID
Sbjct: 103 GGDVSNGKNEYDNYLNNDPLVIAERELHNKSIPFILRRYLPNGSYEDWKLDEL-IID 158
>gi|449511854|ref|XP_002200177.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like, partial [Taeniopygia guttata]
Length = 93
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/40 (95%), Positives = 39/40 (97%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK 122
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELK
Sbjct: 54 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELK 93
>gi|119580606|gb|EAW60202.1| polymerase (RNA) II (DNA directed) polypeptide F, isoform CRA_a
[Homo sapiens]
Length = 118
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 41/44 (93%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKI 126
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKEL +++
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELNPKRL 102
>gi|397578077|gb|EJK50784.1| hypothetical protein THAOC_30115 [Thalassiosira oceanica]
Length = 137
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/46 (78%), Positives = 41/46 (89%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIP 127
+YERARVLGTRALQI+M APVMV+LEGETDPL+IA KEL+ RK P
Sbjct: 84 TKYERARVLGTRALQISMNAPVMVDLEGETDPLKIAQKELRERKNP 129
>gi|123405874|ref|XP_001302693.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Trichomonas vaginalis G3]
gi|121884007|gb|EAX89763.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative [Trichomonas vaginalis G3]
Length = 85
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 51/67 (76%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTR +QI++ APV ++ TDP+ IA KEL+A ++P+IIRRYLP++ YED
Sbjct: 19 KYERARVLGTRGMQISLGAPVTIDAGDLTDPIAIAEKELEAGQLPLIIRRYLPNHEYEDV 78
Query: 143 GIDELKI 149
+ L I
Sbjct: 79 AVKYLII 85
>gi|70944235|ref|XP_742071.1| DNA-directed RNA polymerase subunit I [Plasmodium chabaudi
chabaudi]
gi|56520843|emb|CAH77951.1| DNA-directed RNA polymerase subunit I, putative [Plasmodium
chabaudi chabaudi]
Length = 156
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 16/84 (19%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETD---------------PLQIAMKELKARKIP 127
+YE+AR++GTRALQI++ AP+ + +E + D PL IA +EL + IP
Sbjct: 74 KYEKARIIGTRALQISLNAPLTIPIETQNDKSNGKSDYDNYLNNDPLVIAERELYNKSIP 133
Query: 128 IIIRRYLPDNSYEDWGIDELKIID 151
I+RRYLP+ SYEDW +DEL IID
Sbjct: 134 FILRRYLPNGSYEDWRLDEL-IID 156
>gi|429329679|gb|AFZ81438.1| DNA-directed RNA polymerase subunit I, putative [Babesia equi]
Length = 151
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 22/105 (20%)
Query: 68 KNQIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELE---------------GET 111
K QI N +++ + +YE+AR++GTRALQI++ AP+ + ++ G+T
Sbjct: 48 KAQIDNAHRITSPYLTKYEKARIIGTRALQISLNAPITIPIDSTDAGDDGMHSVGDFGDT 107
Query: 112 -----DPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 151
DPL IA +EL + +P I+RRYLP+ SYEDW I+EL IID
Sbjct: 108 QTAAIDPLIIAERELYQKTVPFIVRRYLPNGSYEDWRIEEL-IID 151
>gi|82915479|ref|XP_729090.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485934|gb|EAA20655.1| Plasmodium vivax PV1H14085_P [Plasmodium yoelii yoelii]
Length = 137
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 16/84 (19%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETD---------------PLQIAMKELKARKIP 127
+YE+AR++GTRALQI++ AP+ + +E + D PL IA +EL + IP
Sbjct: 55 KYEKARIIGTRALQISLNAPLTIPIETQNDKSNGKSDYDNYLNNDPLVIAERELYNKSIP 114
Query: 128 IIIRRYLPDNSYEDWGIDELKIID 151
I+RRYLP+ SYEDW +DEL IID
Sbjct: 115 FILRRYLPNGSYEDWRLDEL-IID 137
>gi|161899317|ref|XP_001712885.1| DNA-directed RNA polymerase I, II and III [Bigelowiella natans]
gi|75756379|gb|ABA27273.1| DNA-directed RNA polymerase I, II and III [Bigelowiella natans]
Length = 115
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 49/69 (71%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
++E+A++LG RA QI+ P V LEGETDPL IA+KE + KIP+ IRRY D SYED+
Sbjct: 47 KFEKAKLLGVRAKQISNGNPPTVPLEGETDPLLIALKEYRENKIPLKIRRYFSDGSYEDF 106
Query: 143 GIDELKIID 151
+ EL I+
Sbjct: 107 FVWELADIN 115
>gi|399217060|emb|CCF73747.1| unnamed protein product [Babesia microti strain RI]
Length = 151
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 60/97 (61%), Gaps = 16/97 (16%)
Query: 70 QIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELE-GETD-------------PL 114
+ ++N++ + +YE+AR++GTRALQI++ AP+ + + GE D PL
Sbjct: 56 HVSSSNRITSPYLTKYEKARIIGTRALQISLNAPITIPFDFGEQDTIDSASMVDAAIDPL 115
Query: 115 QIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 151
IA KEL + IP IRRYLP+ SYEDW I EL IID
Sbjct: 116 VIAEKELYQKTIPFTIRRYLPNGSYEDWKIQEL-IID 151
>gi|156084340|ref|XP_001609653.1| DNA-directed RNA polymerase subunit I [Babesia bovis T2Bo]
gi|154796905|gb|EDO06085.1| DNA-directed RNA polymerase subunit I, putative [Babesia bovis]
Length = 154
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 24/107 (22%)
Query: 68 KNQIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELE--------------GET- 111
+ +++N +++ + +YE+AR++GTRALQI++ AP+ + ++ GE+
Sbjct: 49 RQRVENAHRITSPYMTKYEKARIIGTRALQISLNAPITIPVDASMDTVDEGITMGFGESV 108
Query: 112 -------DPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 151
DPL IA KEL + +P IIRRYLP+ SYEDW I+EL IID
Sbjct: 109 DTSAAAIDPLVIAEKELYQKSVPFIIRRYLPNGSYEDWKIEEL-IID 154
>gi|212540032|ref|XP_002150171.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Talaromyces marneffei ATCC 18224]
gi|210067470|gb|EEA21562.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Talaromyces marneffei ATCC 18224]
Length = 141
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 63 MKVKSKNQIKNNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKEL 121
M+ + +I N+ + + +YERARVLGTRALQI+M APV+V+LEGETDPLQIA+KEL
Sbjct: 76 MEQPREKKIPNDQRSTTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIALKEL 135
Query: 122 KARK 125
+K
Sbjct: 136 NQKK 139
>gi|327354456|gb|EGE83313.1| DNA-directed RNA polymerase I [Ajellomyces dermatitidis ATCC 18188]
Length = 141
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/45 (73%), Positives = 40/45 (88%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKI 126
+YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +K
Sbjct: 96 TKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELAQKKF 140
>gi|429961647|gb|ELA41192.1| hypothetical protein VICG_01791 [Vittaforma corneae ATCC 50505]
Length = 100
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 46/68 (67%)
Query: 84 YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWG 143
YE+A ++G RA Q+ AP V++ D +QIA KEL RK+P IIRR LPD S+EDW
Sbjct: 30 YEKAHIIGVRAAQLNDDAPPFVDIGDLVDCIQIAKKELAERKLPFIIRRKLPDGSFEDWP 89
Query: 144 IDELKIID 151
IDEL I D
Sbjct: 90 IDELLIPD 97
>gi|38569908|gb|AAR24478.1| predicted DNA-directed RNA polymerase IIb [uncultured crenarchaeote
DeepAnt-EC39]
Length = 168
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVEL-EGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
R+E+AR++G RALQ+++ APV VE+ + T LQIAM+ELK R IPI+I+R LP+ Y++
Sbjct: 102 RFEKARIMGARALQLSLGAPVFVEIPKNTTTSLQIAMEELKKRVIPIVIKRTLPNQDYQN 161
Query: 142 WGIDELK 148
+D+ +
Sbjct: 162 IPLDKFQ 168
>gi|269859947|ref|XP_002649697.1| DNA-directed RNA polymerase, subunit K/omega [Enterocytozoon
bieneusi H348]
gi|220066892|gb|EED44362.1| DNA-directed RNA polymerase, subunit K/omega [Enterocytozoon
bieneusi H348]
Length = 75
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 49/66 (74%)
Query: 84 YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWG 143
YE+A+++G RA Q++ AP +V++ TD ++IA KEL +K+P I+RR LP+ SYEDW
Sbjct: 4 YEKAKIIGVRATQLSDDAPPLVDIGNLTDCIEIAKKELAEKKLPFIVRRVLPNGSYEDWK 63
Query: 144 IDELKI 149
I+EL I
Sbjct: 64 IEELLI 69
>gi|73668948|ref|YP_304963.1| DNA-directed RNA polymerase subunit K [Methanosarcina barkeri str.
Fusaro]
gi|72396110|gb|AAZ70383.1| DNA-directed RNA polymerase, subunit K [Methanosarcina barkeri str.
Fusaro]
Length = 60
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 42/53 (79%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+ERAR++G RALQIAM APV+VE +G DPL +A+KELKA IPI ++R
Sbjct: 5 KYTRFERARIIGARALQIAMGAPVLVEDDGRLDPLNLAIKELKAGVIPITVKR 57
>gi|21227861|ref|NP_633783.1| DNA-directed RNA polymerase subunit K [Methanosarcina mazei Go1]
gi|23822087|sp|Q8PW42.1|RPOK_METMA RecName: Full=DNA-directed RNA polymerase subunit K
gi|20906274|gb|AAM31455.1| DNA-directed RNA polymerase subunit K [Methanosarcina mazei Go1]
Length = 83
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 41/50 (82%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
R+ERAR++G RALQIAM APV+VE +G DPL +A++ELKA IPI ++R
Sbjct: 31 RFERARIVGARALQIAMGAPVLVEDDGRLDPLGVAIEELKAGVIPITVKR 80
>gi|167044366|gb|ABZ09044.1| putative RNA polymerase Rpb6 [uncultured marine crenarchaeote
HF4000_APKG6C9]
Length = 168
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVEL-EGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
R+E+AR++G RALQ+++ APV +E+ + T L+IAM+ELK + IPI+I+R LP+ Y++
Sbjct: 102 RFEKARIMGARALQLSLGAPVFIEIPKNATTSLEIAMEELKQKVIPIVIKRTLPNGDYQN 161
Query: 142 WGID 145
+D
Sbjct: 162 LPLD 165
>gi|302511549|ref|XP_003017726.1| hypothetical protein ARB_04609 [Arthroderma benhamiae CBS 112371]
gi|291181297|gb|EFE37081.1| hypothetical protein ARB_04609 [Arthroderma benhamiae CBS 112371]
Length = 194
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 35/38 (92%)
Query: 99 MCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 136
M AP++V+LEGETDPLQIA+KEL +KIP+IIRRYLPD
Sbjct: 151 MNAPILVDLEGETDPLQIALKELNQKKIPLIIRRYLPD 188
>gi|302666747|ref|XP_003024970.1| hypothetical protein TRV_00891 [Trichophyton verrucosum HKI 0517]
gi|291189048|gb|EFE44359.1| hypothetical protein TRV_00891 [Trichophyton verrucosum HKI 0517]
Length = 194
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 35/38 (92%)
Query: 99 MCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 136
M AP++V+LEGETDPLQIA+KEL +KIP+IIRRYLPD
Sbjct: 151 MNAPILVDLEGETDPLQIALKELNQKKIPLIIRRYLPD 188
>gi|20089488|ref|NP_615563.1| DNA-directed RNA polymerase subunit K [Methanosarcina acetivorans
C2A]
gi|23822097|sp|Q8TT40.1|RPOK_METAC RecName: Full=DNA-directed RNA polymerase subunit K
gi|19914395|gb|AAM04043.1| DNA-directed RNA polymerase, subunit K [Methanosarcina acetivorans
C2A]
Length = 60
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 41/53 (77%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+ERAR++G RALQIAM APV+V+ +G DPL +A+ ELKA IPI ++R
Sbjct: 5 KYTRFERARIVGARALQIAMGAPVLVDDDGRLDPLGVAIAELKAEIIPITVKR 57
>gi|449524488|ref|XP_004169254.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like, partial [Cucumis sativus]
Length = 97
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/33 (84%), Positives = 32/33 (96%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQ 115
+YERAR+LGTRALQI+M APVMVELEGETDPL+
Sbjct: 65 KYERARILGTRALQISMNAPVMVELEGETDPLE 97
>gi|351737357|gb|AEQ60392.1| hypothetical protein [Acanthamoeba castellanii mamavirus]
Length = 387
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 62 YMKVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCA-PVMVELEGETDPLQIAMKE 120
Y K++ K N + + YE R+LGTRA Q A P++ +EG P ++A E
Sbjct: 174 YSKIEYKKIPDNERETDPILTYYEIVRILGTRAQQFNYGAKPLIKGVEG-MHPAKMAFVE 232
Query: 121 LKARKIPIIIRRYLPDNSYEDWGIDELKII 150
L A+ P I+RR+LP YEDW IDEL +I
Sbjct: 233 LTAKMTPFIVRRHLPGKKYEDWRIDELGMI 262
>gi|398257060|gb|EJN40668.1| putative RNA polymerase subunit 6 [Acanthamoeba polyphaga
lentillevirus]
Length = 365
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 62 YMKVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCA-PVMVELEGETDPLQIAMKE 120
Y K++ K N + + YE R+LGTRA Q A P++ +EG P ++A E
Sbjct: 174 YSKIEYKKIPDNERETDPILTYYEIVRILGTRAQQFNYGAKPLIKGVEG-MHPAKMAFVE 232
Query: 121 LKARKIPIIIRRYLPDNSYEDWGIDELKII 150
L A+ P I+RR+LP YEDW IDEL +I
Sbjct: 233 LTAKMTPFIVRRHLPGKKYEDWRIDELGMI 262
>gi|118575501|ref|YP_875244.1| DNA-directed RNA polymerase, subunit K/omega [Cenarchaeum symbiosum
A]
gi|118194022|gb|ABK76940.1| DNA-directed RNA polymerase, subunit K/omega [Cenarchaeum symbiosum
A]
Length = 155
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGET-DPLQIAMKELKARKIPIIIRRYLPDNSYED 141
R+E+AR++G RALQ+++ AP +E+ + L IAM EL+ R IPI+IRR LP+ Y++
Sbjct: 89 RFEKARIMGARALQLSLGAPPFIEIPADARTSLDIAMGELEKRIIPIVIRRVLPNGDYQN 148
Query: 142 WGIDELK 148
I K
Sbjct: 149 IPISYFK 155
>gi|339061142|gb|AEJ34446.1| putative RNA polymerase subunit 6 [Acanthamoeba polyphaga
mimivirus]
Length = 406
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 62 YMKVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCA-PVMVELEGETDPLQIAMKE 120
Y K++ K N + + YE R+LGTRA Q A P++ +EG P ++A E
Sbjct: 184 YSKIEYKKIPDNERETDPILTYYEIVRILGTRAQQFNYGAKPLIKGVEG-MHPAKMAFVE 242
Query: 121 LKARKIPIIIRRYLPDNSYEDWGIDELKII 150
L A+ P I+RR+LP YEDW IDEL +I
Sbjct: 243 LTAKMTPFIVRRHLPGKKYEDWRIDELGMI 272
>gi|311977585|ref|YP_003986705.1| DNA-directed RNA polymerase subunit 6 [Acanthamoeba polyphaga
mimivirus]
gi|308204706|gb|ADO18507.1| DNA-directed RNA polymerase subunit 6 [Acanthamoeba polyphaga
mimivirus]
Length = 396
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 62 YMKVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCA-PVMVELEGETDPLQIAMKE 120
Y K++ K N + + YE R+LGTRA Q A P++ +EG P ++A E
Sbjct: 174 YSKIEYKKIPDNERETDPILTYYEIVRILGTRAQQFNYGAKPLIKGVEG-MHPAKMAFVE 232
Query: 121 LKARKIPIIIRRYLPDNSYEDWGIDELKII 150
L A+ P I+RR+LP YEDW IDEL +I
Sbjct: 233 LTAKMTPFIVRRHLPGKKYEDWRIDELGMI 262
>gi|298674291|ref|YP_003726041.1| RNA polymerase Rpb6 [Methanohalobium evestigatum Z-7303]
gi|298287279|gb|ADI73245.1| RNA polymerase Rpb6 [Methanohalobium evestigatum Z-7303]
Length = 65
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL 134
RYERAR++G RALQI+M AP+++E DPLQ+A++ELK IP+ ++R L
Sbjct: 12 RYERARIIGARALQISMDAPILIENVENLDPLQVAIEELKHGVIPVTVKREL 63
>gi|451927638|gb|AGF85516.1| polymerase Rpb6 [Moumouvirus goulette]
Length = 314
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 40/67 (59%)
Query: 84 YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWG 143
YE R+LGTRA Q A +V+ + P ++A EL A+ P IIRR LP YEDW
Sbjct: 192 YEMVRILGTRAQQFNYSAKPLVQGVSDLHPAKMAYVELMAKMTPFIIRRNLPGKKYEDWK 251
Query: 144 IDELKII 150
I EL+II
Sbjct: 252 ISELEII 258
>gi|371945219|gb|AEX63039.1| DNA-directed RNA polymerase subunit 6 [Moumouvirus Monve]
Length = 341
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 41/67 (61%)
Query: 84 YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWG 143
YE R+LGTRA Q A +V+ + P ++A EL A+ P IIRR LP YEDW
Sbjct: 208 YEMVRILGTRAQQFNYGAKPLVQGVNDLHPAKMAYVELIAKMTPFIIRRNLPGKKYEDWK 267
Query: 144 IDELKII 150
I+EL+II
Sbjct: 268 INELEII 274
>gi|359416630|ref|ZP_09208926.1| DNA-directed RNA polymerase subunit K [Candidatus Haloredivivus sp.
G17]
gi|358032987|gb|EHK01596.1| DNA-directed RNA polymerase subunit K [Candidatus Haloredivivus sp.
G17]
Length = 57
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 37/49 (75%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIR 131
R+ERAR+LG R+LQIAM APV V+ E DP+ IA KEL+ ++PI ++
Sbjct: 9 RFERARILGARSLQIAMGAPVFVDAEDNEDPINIAEKELEQDRLPITVK 57
>gi|441432172|ref|YP_007354214.1| RNA polymerase Rpb6 [Acanthamoeba polyphaga moumouvirus]
gi|440383252|gb|AGC01778.1| RNA polymerase Rpb6 [Acanthamoeba polyphaga moumouvirus]
Length = 336
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 41/67 (61%)
Query: 84 YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWG 143
YE R+LGTRA Q A +V+ + P ++A EL A+ P IIRR LP YEDW
Sbjct: 208 YEMVRILGTRAQQFNYGAKPLVQGVNDLHPAKMAYVELIAKMTPFIIRRNLPGKKYEDWK 267
Query: 144 IDELKII 150
I+EL+II
Sbjct: 268 INELEII 274
>gi|119719208|ref|YP_919703.1| RNA polymerase Rpb6 [Thermofilum pendens Hrk 5]
gi|171704667|sp|A1RWX0.1|RPOK_THEPD RecName: Full=DNA-directed RNA polymerase subunit K
gi|119524328|gb|ABL77700.1| DNA-directed RNA polymerase, subunit K [Thermofilum pendens Hrk 5]
Length = 81
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGE-TDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
R+ERAR++G RALQI++ APV++++ E +DP+ IA KEL+ +PII+ R+ P+ ++
Sbjct: 10 RFERARIIGIRALQISLGAPVLIQVSEELSDPITIAEKELELGLLPIIVVRWTPEGKIQE 69
Query: 142 WGIDELKI 149
I LK+
Sbjct: 70 IPIKYLKL 77
>gi|20095016|ref|NP_614863.1| DNA-directed RNA polymerase subunit K/omega [Methanopyrus kandleri
AV19]
gi|19888279|gb|AAM02793.1| DNA-directed RNA polymerase subunit K/omega [Methanopyrus kandleri
AV19]
Length = 56
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 39/50 (78%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
R+E AR++G RALQIAM +PV+VE+EG+ DPL+IA +E +P+++ R
Sbjct: 6 RFEIARIVGARALQIAMGSPVLVEVEGDEDPLEIAKREFDEGVVPVVVIR 55
>gi|329765266|ref|ZP_08256846.1| RNA polymerase Rpb6 [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329138172|gb|EGG42428.1| RNA polymerase Rpb6 [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 177
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETD-PLQIAMKELKARKIPIIIRRYLPDNSYED 141
R+E+AR++G RALQ+++ AP + + L IAM+EL+ R IPI IRR LP+ Y++
Sbjct: 111 RFEKARIMGARALQLSLGAPTFIPIPKTARISLDIAMEELEQRVIPITIRRVLPNGDYQN 170
Query: 142 WGID 145
ID
Sbjct: 171 IPID 174
>gi|11498731|ref|NP_069960.1| DNA-directed RNA polymerase subunit K [Archaeoglobus fulgidus DSM
4304]
gi|3122771|sp|O29134.1|RPOK_ARCFU RecName: Full=DNA-directed RNA polymerase subunit K
gi|2649464|gb|AAB90119.1| DNA-directed RNA polymerase, subunit K (rpoK) [Archaeoglobus
fulgidus DSM 4304]
Length = 75
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Query: 76 KLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K + R+E+AR++G RALQIAM APV++E + +T+PL+IA++E IPI +RR
Sbjct: 6 KFPFEYTRFEKARIIGARALQIAMGAPVLIETD-KTEPLEIALEEFNRGVIPITVRR 61
>gi|393796172|ref|ZP_10379536.1| RNA polymerase Rpb6 [Candidatus Nitrosoarchaeum limnia BG20]
Length = 177
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETD-PLQIAMKELKARKIPIIIRRYLPDNSYED 141
R+E+AR++G RALQ+++ AP + + L IAM+EL+ R IPI IRR LP+ Y++
Sbjct: 111 RFEKARIMGARALQLSLGAPTFIPIPKTARISLDIAMEELEQRVIPITIRRVLPNGDYQN 170
Query: 142 WGID 145
ID
Sbjct: 171 IPID 174
>gi|327401470|ref|YP_004342309.1| DNA-directed RNA polymerase subunit K [Archaeoglobus veneficus
SNP6]
gi|327316978|gb|AEA47594.1| DNA-directed RNA polymerase subunit K [Archaeoglobus veneficus
SNP6]
Length = 80
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
R+E+AR++G RALQIAM APV++E + TDPL+IA +E + IPI +RR
Sbjct: 18 RFEKARIIGARALQIAMGAPVLIETD-RTDPLEIAREEFEKGIIPITVRR 66
>gi|449525712|ref|XP_004169860.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Cucumis sativus]
Length = 43
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/34 (73%), Positives = 28/34 (82%)
Query: 118 MKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 151
MKEL+ RKIP IRRYLPD SYEDWG+DEL + D
Sbjct: 1 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 34
>gi|330508376|ref|YP_004384804.1| hypothetical protein MCON_2562 [Methanosaeta concilii GP6]
gi|328929184|gb|AEB68986.1| conserved domain protein [Methanosaeta concilii GP6]
Length = 59
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K RYERAR++G RALQ+ M APV+++ TDPL+IA++E++ IPI ++R
Sbjct: 5 KYTRYERARIVGARALQVFMGAPVLID-TNHTDPLEIALEEMRLGVIPITVKR 56
>gi|82000058|sp|Q5UQ32.1|RPO6_MIMIV RecName: Full=DNA-directed RNA polymerase subunit 6
gi|55416832|gb|AAV50482.1| putative RNA polymerase subunit 6 [Acanthamoeba polyphaga
mimivirus]
Length = 396
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 62 YMKVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCA-PVMVELEGETDPLQIAMKE 120
Y K++ K N + + YE R+LGTRA Q A P++ +EG P ++A E
Sbjct: 174 YSKIEYKKIPDNERETDPILTYYEIVRILGTRAQQFNYGAKPLIKGVEG-MHPAKMAFVE 232
Query: 121 LKARKIPIIIRRYLPDNSYEDWGIDELKII 150
L A+ I+RR+LP YEDW IDEL +I
Sbjct: 233 LTAKMTSFIVRRHLPGKKYEDWRIDELGMI 262
>gi|124486059|ref|YP_001030675.1| hypothetical protein Mlab_1239 [Methanocorpusculum labreanum Z]
gi|229564217|sp|A2SSV2.1|RPOK_METLZ RecName: Full=DNA-directed RNA polymerase subunit K
gi|124363600|gb|ABN07408.1| RNA polymerase Rpb6 [Methanocorpusculum labreanum Z]
Length = 62
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYERAR++G RALQI+M APV+V+ + DPL IA++E A ++PI ++R
Sbjct: 5 RYERARIVGARALQISMGAPVLVKTV-KIDPLDIALEEFDADRVPITVKR 53
>gi|408404833|ref|YP_006862816.1| DNA-directed RNA polymerase subunit K [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365429|gb|AFU59159.1| DNA-directed RNA polymerase subunit K [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 157
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVEL-EGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
R+ERAR+ G+R+LQ+++ AP ++++ E + +A++E+ A+ +PI IRR LP+ Y+D
Sbjct: 91 RFERARITGSRSLQLSLGAPPLIKVPEQAKSSIMLAVEEIDAKALPISIRRILPNGVYQD 150
Query: 142 WGIDELK 148
ID +K
Sbjct: 151 IPIDWMK 157
>gi|161528440|ref|YP_001582266.1| RNA polymerase Rpb6 [Nitrosopumilus maritimus SCM1]
gi|160339741|gb|ABX12828.1| RNA polymerase Rpb6 [Nitrosopumilus maritimus SCM1]
Length = 182
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETD-PLQIAMKELKARKIPIIIRRYLPDNSYED 141
R+E+AR++G RALQ+++ AP + + L I+M+EL+ R IPI IRR LP+ Y++
Sbjct: 115 RFEKARIMGARALQLSLGAPPFIPIPKTARISLDISMEELEQRVIPITIRRVLPNGDYQN 174
Query: 142 WGID 145
ID
Sbjct: 175 IPID 178
>gi|386875249|ref|ZP_10117434.1| hypothetical protein BD31_I1999 [Candidatus Nitrosopumilus salaria
BD31]
gi|386806948|gb|EIJ66382.1| hypothetical protein BD31_I1999 [Candidatus Nitrosopumilus salaria
BD31]
Length = 165
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETD-PLQIAMKELKARKIPIIIRRYLPDNSYED 141
R+E+AR++G RALQ+++ AP + + L I+M+EL+ R IPI IRR LP+ Y++
Sbjct: 98 RFEKARIMGARALQLSLGAPPFIPIPKNARISLDISMEELEQRVIPITIRRVLPNGDYQN 157
Query: 142 WGID 145
ID
Sbjct: 158 IPID 161
>gi|288932313|ref|YP_003436373.1| RNA polymerase Rpb6 [Ferroglobus placidus DSM 10642]
gi|288894561|gb|ADC66098.1| RNA polymerase Rpb6 [Ferroglobus placidus DSM 10642]
Length = 73
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
R+E+AR++G RALQIAM APV++E + +TDPL+IA +E + IPI ++R
Sbjct: 11 RFEKARIIGARALQIAMGAPVLIETD-KTDPLEIAKEEFERGVIPITVKR 59
>gi|407462558|ref|YP_006773875.1| RNA polymerase Rpb6 [Candidatus Nitrosopumilus koreensis AR1]
gi|407046180|gb|AFS80933.1| RNA polymerase Rpb6 [Candidatus Nitrosopumilus koreensis AR1]
Length = 169
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETD-PLQIAMKELKARKIPIIIRRYLPDNSYED 141
R+E+AR++G RALQ+++ AP + + L I+M+EL+ R IPI IRR LP+ Y++
Sbjct: 102 RFEKARIMGARALQLSLGAPPFIPIPKTARISLDISMEELEQRVIPITIRRVLPNGDYQN 161
Query: 142 WGID 145
ID
Sbjct: 162 IPID 165
>gi|336476947|ref|YP_004616088.1| RNA polymerase Rpb6 [Methanosalsum zhilinae DSM 4017]
gi|335930328|gb|AEH60869.1| RNA polymerase Rpb6 [Methanosalsum zhilinae DSM 4017]
Length = 65
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
+YERAR++G R+LQIAM APV++ G DPL +AM+EL+ IPI ++R
Sbjct: 8 KYERARIIGARSLQIAMGAPVLINDSG-IDPLYLAMEELEQGVIPITVKR 56
>gi|284161251|ref|YP_003399874.1| RNA polymerase Rpb6 [Archaeoglobus profundus DSM 5631]
gi|284011248|gb|ADB57201.1| RNA polymerase Rpb6 [Archaeoglobus profundus DSM 5631]
Length = 73
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 74 NNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+E+ R++G RALQIA+ APV++E + +TDPL+IA +E + IPI +RR
Sbjct: 2 KRTFPFKYTRFEKVRIIGARALQIALGAPVLIETD-KTDPLEIAREEFERGVIPITVRR 59
>gi|363540693|ref|YP_004894358.1| mg307 gene product [Megavirus chiliensis]
gi|350611858|gb|AEQ33302.1| DNA-directed RNA polymerase subunit 6 [Megavirus chiliensis]
Length = 339
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 84 YERARVLGTRALQIAMCA-PVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
YE R++GTR Q+ A P++ +EG P +IA EL+A+ P II+R +P YE+W
Sbjct: 198 YEMVRIIGTRTQQLNYDAQPLVKGVEG-LPPAKIAYIELQAKMTPFIIKRKMPGKKYEEW 256
Query: 143 GIDELKII 150
IDEL+II
Sbjct: 257 KIDELEII 264
>gi|448825258|ref|YP_007418189.1| DNA-directed RNA polymerase subunit 6 [Megavirus lba]
gi|444236443|gb|AGD92213.1| DNA-directed RNA polymerase subunit 6 [Megavirus lba]
Length = 342
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 84 YERARVLGTRALQIAMCA-PVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
YE R++GTR Q+ A P++ +EG P +IA EL+A+ P II+R +P YE+W
Sbjct: 198 YEMVRIIGTRTQQLNYDAQPLVKGVEG-LPPAKIAYIELQAKMTPFIIKRKMPGKKYEEW 256
Query: 143 GIDELKII 150
IDEL+II
Sbjct: 257 KIDELEII 264
>gi|425701180|gb|AFX92342.1| DNA-directed RNA polymerase subunit 6 [Megavirus courdo11]
Length = 349
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 84 YERARVLGTRALQIAMCA-PVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
YE R++GTR Q+ A P++ +EG P +IA EL+A+ P II+R +P YE+W
Sbjct: 202 YEMVRIIGTRTQQLNYDAQPLVKGVEG-LPPAKIAYIELQAKMTPFIIKRKMPGKKYEEW 260
Query: 143 GIDELKII 150
IDEL+II
Sbjct: 261 KIDELEII 268
>gi|371943582|gb|AEX61410.1| DNA-directed RNA polymerase subunit 6 [Megavirus courdo7]
Length = 349
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 84 YERARVLGTRALQIAMCA-PVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
YE R++GTR Q+ A P++ +EG P +IA EL+A+ P II+R +P YE+W
Sbjct: 202 YEMVRIIGTRTQQLNYEAQPLVKGVEG-LPPAKIAYIELQAKMTPFIIKRKMPGKKYEEW 260
Query: 143 GIDELKII 150
IDEL+II
Sbjct: 261 KIDELEII 268
>gi|355570781|ref|ZP_09042051.1| RNA polymerase Rpb6 [Methanolinea tarda NOBI-1]
gi|354826063|gb|EHF10279.1| RNA polymerase Rpb6 [Methanolinea tarda NOBI-1]
Length = 56
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYERAR++G RALQI+M AP++++ + + DPL+IA++E + IPI ++R
Sbjct: 7 RYERARIIGARALQISMGAPLLIKTD-KIDPLEIALEEFQHNVIPITVKR 55
>gi|407464905|ref|YP_006775787.1| RNA polymerase Rpb6 [Candidatus Nitrosopumilus sp. AR2]
gi|407048093|gb|AFS82845.1| RNA polymerase Rpb6 [Candidatus Nitrosopumilus sp. AR2]
Length = 164
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 73 NNNKLNIKQIR---YERARVLGTRALQIAMCAPVMVELEGETD-PLQIAMKELKARKIPI 128
NK+ I R +E+AR++G RALQ+++ AP + + L I+M+EL+ R IPI
Sbjct: 84 EKNKITIGPPRLTKFEKARIMGARALQLSLGAPPFIPIPKTARISLDISMEELEQRVIPI 143
Query: 129 IIRRYLPDNSYEDWGID 145
IRR LP+ Y++ ID
Sbjct: 144 TIRRVLPNGDYQNIPID 160
>gi|254167851|ref|ZP_04874700.1| RNA polymerases K / 14 to 18 kDa subunit [Aciduliprofundum boonei
T469]
gi|197623142|gb|EDY35708.1| RNA polymerases K / 14 to 18 kDa subunit [Aciduliprofundum boonei
T469]
Length = 57
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVEL-EGETDPLQIAMKELKARKIPIIIRR 132
R+E+AR++G RALQI+M APV++ L E DPL IAM E + IPI ++R
Sbjct: 5 RFEKARIIGARALQISMGAPVLIHLPEDVADPLDIAMYEFEKGVIPITVKR 55
>gi|254167901|ref|ZP_04874750.1| RNA polymerases K / 14 to 18 kDa subunit [Aciduliprofundum boonei
T469]
gi|289596604|ref|YP_003483300.1| RNA polymerase Rpb6 [Aciduliprofundum boonei T469]
gi|197623192|gb|EDY35758.1| RNA polymerases K / 14 to 18 kDa subunit [Aciduliprofundum boonei
T469]
gi|289534391|gb|ADD08738.1| RNA polymerase Rpb6 [Aciduliprofundum boonei T469]
Length = 57
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVEL-EGETDPLQIAMKELKARKIPIIIRR 132
R+E+AR++G RALQI+M APV++ L E DPL IAM E + IPI ++R
Sbjct: 5 RFEKARIIGARALQISMGAPVLIHLPENIVDPLDIAMYEFEKGVIPITVKR 55
>gi|126179751|ref|YP_001047716.1| RNA polymerase Rpb6 [Methanoculleus marisnigri JR1]
gi|125862545|gb|ABN57734.1| DNA-directed RNA polymerase, subunit K [Methanoculleus marisnigri
JR1]
Length = 55
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYERAR++G RALQI+M APV+V+ +T+PL+IA++E IPI ++R
Sbjct: 6 RYERARIIGARALQISMGAPVLVKT-PKTEPLEIALEEYDQDMIPITVKR 54
>gi|383320691|ref|YP_005381532.1| DNA-directed RNA polymerase subunit K [Methanocella conradii HZ254]
gi|379322061|gb|AFD01014.1| DNA-directed RNA polymerase, subunit K [Methanocella conradii
HZ254]
Length = 82
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYERAR++G RALQI+M APV+++ +P+++A+ EL+ IPI ++R
Sbjct: 17 RYERARIVGARALQISMGAPVLIKDVKSVEPIEVALAELERGLIPITVKR 66
>gi|395645089|ref|ZP_10432949.1| RNA polymerase Rpb6 [Methanofollis liminatans DSM 4140]
gi|395441829|gb|EJG06586.1| RNA polymerase Rpb6 [Methanofollis liminatans DSM 4140]
Length = 57
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR++G RALQI+M APV++ G DPL IA++E +IPI +++
Sbjct: 7 RYEKARIVGARALQISMGAPVLIP-TGNVDPLNIALEEFGLDQIPITVKK 55
>gi|432327998|ref|YP_007246142.1| DNA-directed RNA polymerase, subunit K/omega [Aciduliprofundum sp.
MAR08-339]
gi|432134707|gb|AGB03976.1| DNA-directed RNA polymerase, subunit K/omega [Aciduliprofundum sp.
MAR08-339]
Length = 57
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVEL-EGETDPLQIAMKELKARKIPIIIRR 132
R+E+AR++G RALQI+M APV++ L E DPL IAM E + IPI ++R
Sbjct: 5 RFEKARIIGARALQISMGAPVLIHLPEDIVDPLDIAMYEFEKGIIPITVKR 55
>gi|91774301|ref|YP_566993.1| DNA-directed RNA polymerase, subunit K [Methanococcoides burtonii
DSM 6242]
gi|91713316|gb|ABE53243.1| DNA-directed RNA polymerase subunit K [Methanococcoides burtonii
DSM 6242]
Length = 63
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 78 NIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL 134
N K RYERAR++G R+LQIAM AP+++E + TD L +A E + IPI ++R L
Sbjct: 7 NEKYTRYERARIIGARSLQIAMGAPILIE-DDNTDALYLATLEFEKGVIPITVKRNL 62
>gi|154151756|ref|YP_001405374.1| RNA polymerase Rpb6 [Methanoregula boonei 6A8]
gi|154000308|gb|ABS56731.1| RNA polymerase Rpb6 [Methanoregula boonei 6A8]
Length = 57
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYERAR++G RALQI+M AP+++ DPL+IA++E A IPI ++R
Sbjct: 8 RYERARIIGARALQISMGAPLLIS-TSRIDPLEIAIEEFNADIIPITVKR 56
>gi|424814623|ref|ZP_18239801.1| DNA-directed RNA polymerase, subunit K [Candidatus Nanosalina sp.
J07AB43]
gi|339758239|gb|EGQ43496.1| DNA-directed RNA polymerase, subunit K [Candidatus Nanosalina sp.
J07AB43]
Length = 54
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIR 131
RYE+AR+LG R+LQ+A AP VE E PL+I+ +EL K+PI ++
Sbjct: 6 RYEKARILGARSLQLAQGAPAFVEAEEHEKPLEISKRELSQGKLPITVK 54
>gi|147921494|ref|YP_684691.1| DNA-directed RNA polymerase, subunit K [Methanocella arvoryzae
MRE50]
gi|110620087|emb|CAJ35365.1| DNA-directed RNA polymerase, subunit K [Methanocella arvoryzae
MRE50]
Length = 88
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 59 LNHYMKVKSKNQIKNNNK-LNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIA 117
++HY ++K+ +K + + RYERAR++G RALQI+M APV+ + +P+++A
Sbjct: 1 MHHYSPGGVLLELKSTSKEIKDRYTRYERARIIGARALQISMGAPVLAKNPKTVEPIEVA 60
Query: 118 MKELKARKIPIIIRR 132
+ EL+ +PI +R+
Sbjct: 61 LLELEQGLVPITVRK 75
>gi|327198714|emb|CCA61415.1| unnamed protein product [Diadromus pulchellus ascovirus 4a]
Length = 119
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YE+ARVLG R QI A + VE + +A++EL+ RK+P+I+RR++ +NSY D
Sbjct: 53 KYEKARVLGERTKQINAGAQIFVERLCDDSDFDVALRELEQRKMPLIVRRHI-NNSYVDI 111
Query: 143 GIDEL 147
+++L
Sbjct: 112 SVNKL 116
>gi|282164313|ref|YP_003356698.1| DNA-directed RNA polymerase subunit K [Methanocella paludicola
SANAE]
gi|282156627|dbj|BAI61715.1| DNA-directed RNA polymerase subunit K [Methanocella paludicola
SANAE]
Length = 73
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 39/53 (73%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K RYERAR++G RALQI+M APV+++ +P+++A+ EL+ IPI +++
Sbjct: 9 KYTRYERARIVGARALQISMGAPVLMKDANSVEPIEVALAELERGLIPITVKK 61
>gi|27817987|dbj|BAC55751.1| putative DNA-directed RNA polymerase Iia [Oryza sativa Japonica
Group]
Length = 286
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQI 116
+YERAR+L TRALQI+M APVMVELEG T PL++
Sbjct: 93 KYERARILSTRALQISMNAPVMVELEGGTYPLEV 126
>gi|294496194|ref|YP_003542687.1| DNA-directed RNA polymerase, subunit K [Methanohalophilus mahii DSM
5219]
gi|292667193|gb|ADE37042.1| DNA-directed RNA polymerase, subunit K [Methanohalophilus mahii DSM
5219]
Length = 60
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 78 NIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
N K +YERAR++G R+LQIAM APV+++++ D LQIA E + IPI ++R
Sbjct: 3 NEKFTKYERARIIGARSLQIAMEAPVLIDIDS-NDSLQIAKVEFEKGVIPITVKR 56
>gi|222640586|gb|EEE68718.1| hypothetical protein OsJ_27379 [Oryza sativa Japonica Group]
Length = 230
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 82 IRYERARVLGTRALQIAMCAPVMVELEGETDPLQI 116
+YERAR+L TRALQI+M APVMVELEG T PL++
Sbjct: 100 TKYERARILSTRALQISMNAPVMVELEGGTYPLEV 134
>gi|88604127|ref|YP_504305.1| RNA polymerase Rpb6 [Methanospirillum hungatei JF-1]
gi|88189589|gb|ABD42586.1| DNA-directed RNA polymerase, subunit K [Methanospirillum hungatei
JF-1]
Length = 55
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR++G RALQI+M AP+++ DPL+IAM+E IPI ++R
Sbjct: 6 RYEKARIVGARALQISMGAPILIAT-SSIDPLEIAMEEFDREVIPITVKR 54
>gi|148643493|ref|YP_001274006.1| DNA-directed RNA polymerase, subunit K, RpoK [Methanobrevibacter
smithii ATCC 35061]
gi|222445008|ref|ZP_03607523.1| hypothetical protein METSMIALI_00624 [Methanobrevibacter smithii
DSM 2375]
gi|288869703|ref|ZP_05975839.2| RNA polymerase [Methanobrevibacter smithii DSM 2374]
gi|148552510|gb|ABQ87638.1| DNA-directed RNA polymerase, subunit K, RpoK [Methanobrevibacter
smithii ATCC 35061]
gi|222434573|gb|EEE41738.1| RNA polymerases K / 14 to 18 kDa subunit [Methanobrevibacter
smithii DSM 2375]
gi|288861205|gb|EFC93503.1| RNA polymerase [Methanobrevibacter smithii DSM 2374]
Length = 65
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRY 133
R+ERAR+LG RA+QI+M A +VE+ DP+ IA +ELKA +P+ + RY
Sbjct: 13 RFERARLLGARAIQISMGAKPLVEIGDSLDPIDIAYEELKAGVLPLDVIRY 63
>gi|432329925|ref|YP_007248068.1| DNA-directed RNA polymerase, subunit K/omega [Methanoregula
formicicum SMSP]
gi|432136634|gb|AGB01561.1| DNA-directed RNA polymerase, subunit K/omega [Methanoregula
formicicum SMSP]
Length = 57
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYERAR++G RALQI+M AP+++ DPL+IA++E IPI ++R
Sbjct: 8 RYERARIIGARALQISMGAPLLIT-TTRIDPLEIAIEEFTNNTIPITVKR 56
>gi|15790221|ref|NP_280045.1| DNA-directed RNA polymerase subunit K [Halobacterium sp. NRC-1]
gi|169235950|ref|YP_001689150.1| DNA-directed RNA polymerase subunit K [Halobacterium salinarum R1]
gi|15214259|sp|Q9HQJ0.1|RPOK_HALSA RecName: Full=DNA-directed RNA polymerase subunit K
gi|229564216|sp|B0R4Y7.1|RPOK_HALS3 RecName: Full=DNA-directed RNA polymerase subunit K
gi|10580679|gb|AAG19525.1| DNA-directed RNA polymerase subunit K [Halobacterium sp. NRC-1]
gi|167727016|emb|CAP13802.1| DNA-directed RNA polymerase subunit K [Halobacterium salinarum R1]
Length = 60
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR++G RALQ+A APV+V+ + +T+P+ IA +E A +P +RR
Sbjct: 9 RYEKARIIGARALQVAYGAPVLVDTD-QTEPILIAAEEYDADALPFTVRR 57
>gi|116753792|ref|YP_842910.1| RNA polymerase Rpb6 [Methanosaeta thermophila PT]
gi|121694449|sp|A0B6E6.1|RPOK_METTP RecName: Full=DNA-directed RNA polymerase subunit K
gi|116665243|gb|ABK14270.1| DNA-directed RNA polymerase, subunit K [Methanosaeta thermophila
PT]
Length = 60
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+ERAR++G RALQI M APV++ + DPL+IA++E++ IPI ++R
Sbjct: 5 KYTRFERARIVGARALQIFMGAPVLIRTDS-IDPLEIALEEMRLGVIPITVKR 56
>gi|340344966|ref|ZP_08668098.1| RNA polymerase Rpb6 [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339520107|gb|EGP93830.1| RNA polymerase Rpb6 [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 177
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETD-PLQIAMKELKARKIPIIIRRYLPDNSYED 141
R+E+AR++G RALQ+++ AP + + L I+M+EL+ + IPI IRR LP+ Y++
Sbjct: 111 RFEKARIMGARALQLSLGAPPFIPIPKTARISLDISMEELEQKVIPITIRRVLPNGDYQN 170
Query: 142 WGID 145
I+
Sbjct: 171 IPIE 174
>gi|307352917|ref|YP_003893968.1| RNA polymerase Rpb6 [Methanoplanus petrolearius DSM 11571]
gi|307156150|gb|ADN35530.1| RNA polymerase Rpb6 [Methanoplanus petrolearius DSM 11571]
Length = 56
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYERAR++G R+LQI+M AP++V+ + + DPL+IA++E + IPI ++R
Sbjct: 7 RYERARIVGARSLQISMGAPLLVKTD-KIDPLEIALEEYQKGVIPITVKR 55
>gi|124027790|ref|YP_001013110.1| DNA-directed RNA polymerase subunit K [Hyperthermus butylicus DSM
5456]
gi|123978484|gb|ABM80765.1| DNA-directed RNA polymerase subunit K [Hyperthermus butylicus DSM
5456]
Length = 102
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEG-----ETDPLQIAMKELKARKIPIIIRRYLPDN 137
R+ERARV+G RALQI+M APV++++E DP+ IA KEL+ +P+ I RY
Sbjct: 24 RFERARVIGVRALQISMGAPVLIDVEKLPRHVREDPVLIAKKELEIGVLPMTIVRYTRRG 83
Query: 138 SYEDWGIDELKIIDR 152
+ + L ++DR
Sbjct: 84 DVQPIPLKWLVVLDR 98
>gi|15678071|ref|NP_275185.1| DNA-dependent RNA polymerase subunit K [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3122767|sp|O26148.1|RPOK_METTH RecName: Full=DNA-directed RNA polymerase subunit K
gi|2621077|gb|AAB84549.1| DNA-dependent RNA polymerase, subunit K [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 61
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 39/53 (73%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+ERAR++G RALQI+M A +VE++ DP+ IA KEL+ + +P+ +RR
Sbjct: 7 KLTRFERARLIGARALQISMGARPLVEIKESLDPVDIARKELEKKVMPLDVRR 59
>gi|219852952|ref|YP_002467384.1| RNA polymerase Rpb6 [Methanosphaerula palustris E1-9c]
gi|219547211|gb|ACL17661.1| RNA polymerase Rpb6 [Methanosphaerula palustris E1-9c]
Length = 56
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYERAR++G R+LQI+M AP++V ++DPL+IA++E IPI ++R
Sbjct: 6 RYERARIIGARSLQISMGAPILVRTT-KSDPLEIALEEYNQGIIPITVKR 54
>gi|448460448|ref|ZP_21597273.1| DNA-directed RNA polymerase subunit K [Halorubrum lipolyticum DSM
21995]
gi|445807189|gb|EMA57275.1| DNA-directed RNA polymerase subunit K [Halorubrum lipolyticum DSM
21995]
Length = 59
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV++E + +T+P+ +A +E A +P +RR
Sbjct: 8 RYEKARILGARALQVSYGAPVLIETD-QTEPILVAAEEYDAGALPFTVRR 56
>gi|424812142|ref|ZP_18237382.1| DNA-directed RNA polymerase, subunit K [Candidatus Nanosalinarum
sp. J07AB56]
gi|339756364|gb|EGQ39947.1| DNA-directed RNA polymerase, subunit K [Candidatus Nanosalinarum
sp. J07AB56]
Length = 54
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR++G R+LQ+AM AP MV+ + +DP++IA EL+ IPI I++
Sbjct: 6 RYEKARIVGARSLQLAMGAPRMVDTDS-SDPMEIAEHELEEGNIPITIQK 54
>gi|448739239|ref|ZP_21721254.1| DNA-directed RNA polymerase subunit K [Halococcus thailandensis JCM
13552]
gi|445799834|gb|EMA50203.1| DNA-directed RNA polymerase subunit K [Halococcus thailandensis JCM
13552]
Length = 59
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR++G RALQIA APV+VE E T+P+ IA +E A +P ++R
Sbjct: 8 RYEKARIIGARALQIAYGAPVLVETES-TEPILIAAEEYDADVLPFTVKR 56
>gi|323462796|pdb|2Y0S|I Chain I, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462798|pdb|2Y0S|K Chain K, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260750|pdb|4AYB|K Chain K, Rnap At 3.2ang
gi|400260767|pdb|4B1O|K Chain K, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260776|pdb|4B1P|I Chain I, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814445|gb|ACL36496.1| RNA polymerase subunit 6 [Sulfolobus shibatae B12]
Length = 95
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPD 136
K RYE ARV+ RALQ+AM AP ++++ TD + IA +E K +PI IRR LP+
Sbjct: 26 KLTRYEIARVISARALQLAMGAPALIDINNISSTDVISIAEEEFKRGVLPITIRRRLPN 84
>gi|448611947|ref|ZP_21662377.1| DNA-directed RNA polymerase subunit K [Haloferax mucosum ATCC
BAA-1512]
gi|445742708|gb|ELZ94202.1| DNA-directed RNA polymerase subunit K [Haloferax mucosum ATCC
BAA-1512]
Length = 58
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQI+ APV+VE E +T+P+ IA +E A +P ++R
Sbjct: 7 RYEKARILGARALQISYGAPVLVESE-QTEPILIAAEEYDAGVLPFTVKR 55
>gi|435847143|ref|YP_007309393.1| DNA-directed RNA polymerase, subunit K/omega [Natronococcus
occultus SP4]
gi|433673411|gb|AGB37603.1| DNA-directed RNA polymerase, subunit K/omega [Natronococcus
occultus SP4]
Length = 60
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQI+ APV+VE + +++P+ IA +E A +P +RR
Sbjct: 8 RYEKARILGARALQISYGAPVLVETD-QSEPILIAAEEYDAGALPFTVRR 56
>gi|448348759|ref|ZP_21537607.1| RNA polymerase Rpb6 [Natrialba taiwanensis DSM 12281]
gi|448368981|ref|ZP_21555748.1| RNA polymerase Rpb6 [Natrialba aegyptia DSM 13077]
gi|445642420|gb|ELY95488.1| RNA polymerase Rpb6 [Natrialba taiwanensis DSM 12281]
gi|445651524|gb|ELZ04432.1| RNA polymerase Rpb6 [Natrialba aegyptia DSM 13077]
Length = 58
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV++E E +T+P+ IA +E A +P ++R
Sbjct: 8 RYEKARILGARALQVSYGAPVLIETE-QTEPILIAAEEYDAGVLPFTVKR 56
>gi|448361730|ref|ZP_21550343.1| RNA polymerase Rpb6 [Natrialba asiatica DSM 12278]
gi|445649410|gb|ELZ02347.1| RNA polymerase Rpb6 [Natrialba asiatica DSM 12278]
Length = 57
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV++E E +T+P+ IA +E A +P ++R
Sbjct: 7 RYEKARILGARALQVSYGAPVLIETE-QTEPILIAAEEYDAGVLPFTVKR 55
>gi|389848209|ref|YP_006350448.1| DNA-directed RNA polymerase subunit K [Haloferax mediterranei ATCC
33500]
gi|448618417|ref|ZP_21666654.1| DNA-directed RNA polymerase subunit K [Haloferax mediterranei ATCC
33500]
gi|388245515|gb|AFK20461.1| DNA-directed RNA polymerase subunit K [Haloferax mediterranei ATCC
33500]
gi|445746788|gb|ELZ98246.1| DNA-directed RNA polymerase subunit K [Haloferax mediterranei ATCC
33500]
Length = 58
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV+VE E +T+P+ IA +E A +P ++R
Sbjct: 7 RYEKARILGARALQVSYGAPVLVETE-QTEPILIAAEEYDAGVLPFTVKR 55
>gi|355712732|gb|AES04447.1| polymerase II polypeptide F [Mustela putorius furo]
Length = 83
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/25 (96%), Positives = 25/25 (100%)
Query: 83 RYERARVLGTRALQIAMCAPVMVEL 107
+YERARVLGTRALQIAMCAPVMVEL
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVEL 83
>gi|374628600|ref|ZP_09700985.1| DNA-directed RNA polymerase, subunit K [Methanoplanus limicola DSM
2279]
gi|373906713|gb|EHQ34817.1| DNA-directed RNA polymerase, subunit K [Methanoplanus limicola DSM
2279]
Length = 55
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYERAR++G R+LQI+M AP++V+ + DPL+IA++E + IPI ++R
Sbjct: 6 RYERARIVGARSLQISMGAPLLVKTD-RIDPLEIALEEYELGVIPITVKR 54
>gi|435851776|ref|YP_007313362.1| DNA-directed RNA polymerase, subunit K/omega [Methanomethylovorans
hollandica DSM 15978]
gi|433662406|gb|AGB49832.1| DNA-directed RNA polymerase, subunit K/omega [Methanomethylovorans
hollandica DSM 15978]
Length = 62
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYERAR++G R+LQI+M APV+++ G T L IA KEL+ IPI ++R
Sbjct: 8 RYERARIIGARSLQISMGAPVLIDDPG-TQSLYIAKKELELGVIPITVKR 56
>gi|448578445|ref|ZP_21643880.1| DNA-directed RNA polymerase subunit K [Haloferax larsenii JCM
13917]
gi|445726986|gb|ELZ78602.1| DNA-directed RNA polymerase subunit K [Haloferax larsenii JCM
13917]
Length = 57
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV+VE E +T+P+ IA +E A +P ++R
Sbjct: 6 RYEKARILGARALQVSYGAPVLVESE-QTEPILIAAEEYDAGVLPFTVKR 54
>gi|448400366|ref|ZP_21571358.1| RNA polymerase Rpb6 [Haloterrigena limicola JCM 13563]
gi|445667389|gb|ELZ20032.1| RNA polymerase Rpb6 [Haloterrigena limicola JCM 13563]
Length = 61
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV++E E +T+P+ IA +E A +P ++R
Sbjct: 8 RYEKARILGARALQVSYGAPVLIETE-QTEPILIAAEEYDAGVLPFTVKR 56
>gi|409096140|ref|ZP_11216164.1| DNA-directed RNA polymerase subunit K [Thermococcus zilligii AN1]
Length = 57
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
R+E+AR++G RALQIAM APV+V++ PLQ A+ E + IPI + R
Sbjct: 6 RFEKARIIGARALQIAMGAPVLVDVPEGATPLQAAIVEFEMGVIPITVVR 55
>gi|399576708|ref|ZP_10770463.1| DNA-directed RNA polymerase subunit K [Halogranum salarium B-1]
gi|399238152|gb|EJN59081.1| DNA-directed RNA polymerase subunit K [Halogranum salarium B-1]
Length = 60
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV+++ E ET+P+ IA +E A +P ++R
Sbjct: 9 RYEKARILGARALQVSYGAPVLIDTE-ETEPILIAAEEYDAGVLPFTVKR 57
>gi|448465598|ref|ZP_21598864.1| DNA-directed RNA polymerase subunit K [Halorubrum kocurii JCM
14978]
gi|445814930|gb|EMA64878.1| DNA-directed RNA polymerase subunit K [Halorubrum kocurii JCM
14978]
Length = 59
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV++E + +T+P+ +A +E A +P +RR
Sbjct: 8 RYEKARILGARALQVSYGAPVLIETD-QTEPILVAAEEYDAGALPFTVRR 56
>gi|55377004|ref|YP_134854.1| DNA-directed RNA polymerase subunit K [Haloarcula marismortui ATCC
43049]
gi|344211115|ref|YP_004795435.1| DNA-directed RNA polymerase subunit K [Haloarcula hispanica ATCC
33960]
gi|448630475|ref|ZP_21673130.1| DNA-directed RNA polymerase subunit K [Haloarcula vallismortis ATCC
29715]
gi|448640845|ref|ZP_21677632.1| DNA-directed RNA polymerase subunit K [Haloarcula sinaiiensis ATCC
33800]
gi|448651245|ref|ZP_21680314.1| DNA-directed RNA polymerase subunit K [Haloarcula californiae ATCC
33799]
gi|448667515|ref|ZP_21686015.1| DNA-directed RNA polymerase subunit K [Haloarcula amylolytica JCM
13557]
gi|448678700|ref|ZP_21689707.1| DNA-directed RNA polymerase subunit K [Haloarcula argentinensis DSM
12282]
gi|448689113|ref|ZP_21694850.1| DNA-directed RNA polymerase subunit K [Haloarcula japonica DSM
6131]
gi|141414|sp|P29200.1|RPOK_HALMA RecName: Full=DNA-directed RNA polymerase subunit K
gi|148780|gb|AAA73100.1| OrfMNA [Haloarcula marismortui]
gi|55229729|gb|AAV45148.1| DNA-directed RNA polymerase subunit K [Haloarcula marismortui ATCC
43049]
gi|343782470|gb|AEM56447.1| DNA-directed RNA polymerase subunit K [Haloarcula hispanica ATCC
33960]
gi|445756398|gb|EMA07773.1| DNA-directed RNA polymerase subunit K [Haloarcula vallismortis ATCC
29715]
gi|445761370|gb|EMA12618.1| DNA-directed RNA polymerase subunit K [Haloarcula sinaiiensis ATCC
33800]
gi|445770083|gb|EMA21151.1| DNA-directed RNA polymerase subunit K [Haloarcula amylolytica JCM
13557]
gi|445770772|gb|EMA21830.1| DNA-directed RNA polymerase subunit K [Haloarcula californiae ATCC
33799]
gi|445772687|gb|EMA23732.1| DNA-directed RNA polymerase subunit K [Haloarcula argentinensis DSM
12282]
gi|445778983|gb|EMA29925.1| DNA-directed RNA polymerase subunit K [Haloarcula japonica DSM
6131]
Length = 57
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 77 LNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
+N ++ RYE+AR LG RALQ+A APV++E E T P+ IA +E A +P + R
Sbjct: 1 MNAQESRYEKARKLGARALQLAHGAPVLIETE-HTQPILIAAEEYDAGVLPFTVNR 55
>gi|448409414|ref|ZP_21574712.1| RNA polymerase Rpb6 [Halosimplex carlsbadense 2-9-1]
gi|445673017|gb|ELZ25584.1| RNA polymerase Rpb6 [Halosimplex carlsbadense 2-9-1]
Length = 58
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR++G RALQ+A APV+V+ E +T P+ IA +E + +P +RR
Sbjct: 7 RYEKARIIGARALQVAYGAPVLVDTE-QTQPILIAAEEYDSGALPFTVRR 55
>gi|389852935|ref|YP_006355169.1| DNA-directed RNA polymerase subunit K [Pyrococcus sp. ST04]
gi|388250241|gb|AFK23094.1| DNA-directed RNA polymerase subunit K [Pyrococcus sp. ST04]
Length = 57
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+E+AR++G RALQIAM APV++++ T PL+ A+ E + IPI + R
Sbjct: 3 KYTRFEKARIIGARALQIAMGAPVLIDVPEGTTPLEAAILEFEKGIIPITVIR 55
>gi|448474330|ref|ZP_21602189.1| RNA polymerase Rpb6 [Halorubrum aidingense JCM 13560]
gi|445817637|gb|EMA67506.1| RNA polymerase Rpb6 [Halorubrum aidingense JCM 13560]
Length = 59
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV++E +T+P+ +A +E A +P +RR
Sbjct: 8 RYEKARILGARALQVSYGAPVLIET-NQTEPILVAAEEYDAGALPFTVRR 56
>gi|408381883|ref|ZP_11179430.1| DNA-directed RNA polymerase subunit K [Methanobacterium formicicum
DSM 3637]
gi|407815331|gb|EKF85916.1| DNA-directed RNA polymerase subunit K [Methanobacterium formicicum
DSM 3637]
Length = 98
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 9/87 (10%)
Query: 54 ALVLILNHY---MKVKSKNQIKNNNKLNIKQI------RYERARVLGTRALQIAMCAPVM 104
A L+L+ + +K+ +KN I N K K + R+ERAR++G RALQ++M A M
Sbjct: 10 AAPLLLHKFTKKLKISNKNFISPNKKKRRKSMASKKLNRFERARLIGARALQLSMGAKPM 69
Query: 105 VELEGETDPLQIAMKELKARKIPIIIR 131
+++ + DP+ IA+ EL + +P+ +R
Sbjct: 70 IDVTPDMDPIDIAVIELNKKVLPLDVR 96
>gi|257388637|ref|YP_003178410.1| RNA polymerase Rpb6 [Halomicrobium mukohataei DSM 12286]
gi|257170944|gb|ACV48703.1| RNA polymerase Rpb6 [Halomicrobium mukohataei DSM 12286]
Length = 58
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 79 IKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
+++ RYE+AR++G RALQ+A APV+++ + +T P+ IA +E A +P +RR
Sbjct: 3 VQENRYEKARIIGARALQVAFGAPVLIDTD-QTQPILIAAEEYDAGVLPFTVRR 55
>gi|397772876|ref|YP_006540422.1| RNA polymerase Rpb6 [Natrinema sp. J7-2]
gi|448337136|ref|ZP_21526218.1| RNA polymerase Rpb6 [Natrinema pallidum DSM 3751]
gi|448340560|ref|ZP_21529531.1| RNA polymerase Rpb6 [Natrinema gari JCM 14663]
gi|448346275|ref|ZP_21535161.1| RNA polymerase Rpb6 [Natrinema altunense JCM 12890]
gi|397681969|gb|AFO56346.1| RNA polymerase Rpb6 [Natrinema sp. J7-2]
gi|445626482|gb|ELY79825.1| RNA polymerase Rpb6 [Natrinema pallidum DSM 3751]
gi|445629993|gb|ELY83263.1| RNA polymerase Rpb6 [Natrinema gari JCM 14663]
gi|445632864|gb|ELY86070.1| RNA polymerase Rpb6 [Natrinema altunense JCM 12890]
Length = 61
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV++E E +T P+ IA +E A +P ++R
Sbjct: 8 RYEKARILGARALQVSYGAPVLIETE-QTQPILIAAEEYDAGVLPFTVKR 56
>gi|16082173|ref|NP_394616.1| DNA-directed RNA polymerase subunit K [Thermoplasma acidophilum DSM
1728]
gi|13633844|sp|Q9HJ14.1|RPOK_THEAC RecName: Full=DNA-directed RNA polymerase subunit K
gi|10640471|emb|CAC12285.1| probable DNA-directed RNA polymerase, chain K (rpok) [Thermoplasma
acidophilum]
Length = 61
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 79 IKQIRYERARVLGTRALQIAMCAPVMVELEGE-TDPLQIAMKELKARKIPIIIRR 132
+K ++E+AR++G RALQIAM APV++++ DP+ IAM E + IPI I++
Sbjct: 1 MKYTKFEKARIIGARALQIAMGAPVIIDVPKNIIDPVDIAMLEFENNVIPITIKK 55
>gi|433590982|ref|YP_007280478.1| DNA-directed RNA polymerase, subunit K/omega [Natrinema pellirubrum
DSM 15624]
gi|448334515|ref|ZP_21523690.1| RNA polymerase Rpb6 [Natrinema pellirubrum DSM 15624]
gi|448385457|ref|ZP_21563963.1| RNA polymerase Rpb6 [Haloterrigena thermotolerans DSM 11522]
gi|433305762|gb|AGB31574.1| DNA-directed RNA polymerase, subunit K/omega [Natrinema pellirubrum
DSM 15624]
gi|445619847|gb|ELY73364.1| RNA polymerase Rpb6 [Natrinema pellirubrum DSM 15624]
gi|445656952|gb|ELZ09784.1| RNA polymerase Rpb6 [Haloterrigena thermotolerans DSM 11522]
Length = 60
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV++E E +T P+ IA +E A +P ++R
Sbjct: 7 RYEKARILGARALQVSYGAPVLIETE-QTQPILIAAEEYDAGVLPFTVKR 55
>gi|448391694|ref|ZP_21566789.1| RNA polymerase Rpb6 [Haloterrigena salina JCM 13891]
gi|445665106|gb|ELZ17784.1| RNA polymerase Rpb6 [Haloterrigena salina JCM 13891]
Length = 61
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQI+ APV+VE + +++P+ IA +E A +P ++R
Sbjct: 8 RYEKARILGARALQISYGAPVLVETD-QSEPILIAAEEYDAEVLPFTVKR 56
>gi|452207488|ref|YP_007487610.1| DNA-directed RNA polymerase subunit K [Natronomonas moolapensis
8.8.11]
gi|452083588|emb|CCQ36900.1| DNA-directed RNA polymerase subunit K [Natronomonas moolapensis
8.8.11]
Length = 57
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV+++ + +T+P+ +A +E A +P +RR
Sbjct: 6 RYEKARILGARALQVSYGAPVLIDTD-QTEPILVAAEEYDANALPFTVRR 54
>gi|354610850|ref|ZP_09028806.1| DNA-directed RNA polymerase subunit K [Halobacterium sp. DL1]
gi|353195670|gb|EHB61172.1| DNA-directed RNA polymerase subunit K [Halobacterium sp. DL1]
Length = 59
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR++G RALQ++ APV+V+ + +T+P+ IA +E A +P +RR
Sbjct: 9 RYEKARIIGARALQVSYGAPVLVDTD-QTEPILIAAEEYDAEVLPFTVRR 57
>gi|385773256|ref|YP_005645822.1| RNA polymerase Rpb6 [Sulfolobus islandicus HVE10/4]
gi|385775890|ref|YP_005648458.1| RNA polymerase Rpb6 [Sulfolobus islandicus REY15A]
gi|323474638|gb|ADX85244.1| RNA polymerase Rpb6 [Sulfolobus islandicus REY15A]
gi|323477370|gb|ADX82608.1| RNA polymerase Rpb6 [Sulfolobus islandicus HVE10/4]
Length = 87
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPD 136
K RYE ARV+ RALQ+AM AP ++++ TD + IA +E K +PI IRR LP+
Sbjct: 18 KLTRYEIARVISARALQLAMGAPALIDINNISLTDVISIAEEEFKRGVLPITIRRRLPN 76
>gi|448431133|ref|ZP_21584961.1| DNA-directed RNA polymerase subunit K [Halorubrum tebenquichense
DSM 14210]
gi|448491309|ref|ZP_21608250.1| DNA-directed RNA polymerase subunit K [Halorubrum californiensis
DSM 19288]
gi|445688280|gb|ELZ40545.1| DNA-directed RNA polymerase subunit K [Halorubrum tebenquichense
DSM 14210]
gi|445693080|gb|ELZ45242.1| DNA-directed RNA polymerase subunit K [Halorubrum californiensis
DSM 19288]
Length = 58
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV+++ + +T+P+ +A +E A +P +RR
Sbjct: 8 RYEKARILGARALQVSYGAPVLIDTD-QTEPILVAAEEYDAGALPFTVRR 56
>gi|222480236|ref|YP_002566473.1| RNA polymerase Rpb6 [Halorubrum lacusprofundi ATCC 49239]
gi|448440163|ref|ZP_21588411.1| DNA-directed RNA polymerase subunit K [Halorubrum saccharovorum DSM
1137]
gi|254765434|sp|B9LPW5.1|RPOK_HALLT RecName: Full=DNA-directed RNA polymerase subunit K
gi|222453138|gb|ACM57403.1| RNA polymerase Rpb6 [Halorubrum lacusprofundi ATCC 49239]
gi|445690680|gb|ELZ42890.1| DNA-directed RNA polymerase subunit K [Halorubrum saccharovorum DSM
1137]
Length = 59
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV+++ + +T+P+ +A +E A +P +RR
Sbjct: 8 RYEKARILGARALQVSYGAPVLIDTD-QTEPILVAAEEYDAGALPFTVRR 56
>gi|448330857|ref|ZP_21520133.1| RNA polymerase Rpb6 [Natrinema versiforme JCM 10478]
gi|445610693|gb|ELY64462.1| RNA polymerase Rpb6 [Natrinema versiforme JCM 10478]
Length = 61
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQI+ APV+ E E +T P+ IA +E A +P ++R
Sbjct: 8 RYEKARILGARALQISYGAPVLTETE-QTQPILIAAEEYDAGVLPFTVKR 56
>gi|227827586|ref|YP_002829366.1| DNA-directed RNA polymerase subunit K [Sulfolobus islandicus
M.14.25]
gi|229584790|ref|YP_002843292.1| DNA-directed RNA polymerase subunit K [Sulfolobus islandicus
M.16.27]
gi|238619744|ref|YP_002914570.1| DNA-directed RNA polymerase subunit K [Sulfolobus islandicus
M.16.4]
gi|259494221|sp|C3N5H2.1|RPOK_SULIA RecName: Full=DNA-directed RNA polymerase subunit K
gi|259494222|sp|C4KH38.1|RPOK_SULIK RecName: Full=DNA-directed RNA polymerase subunit K
gi|259494223|sp|C3MUV8.1|RPOK_SULIM RecName: Full=DNA-directed RNA polymerase subunit K
gi|227459382|gb|ACP38068.1| RNA polymerase Rpb6 [Sulfolobus islandicus M.14.25]
gi|228019840|gb|ACP55247.1| RNA polymerase Rpb6 [Sulfolobus islandicus M.16.27]
gi|238380814|gb|ACR41902.1| RNA polymerase Rpb6 [Sulfolobus islandicus M.16.4]
Length = 95
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPD 136
K RYE ARV+ RALQ+AM AP ++++ TD + IA +E K +PI IRR LP+
Sbjct: 26 KLTRYEIARVISARALQLAMGAPALIDINNISLTDVISIAEEEFKRGVLPITIRRRLPN 84
>gi|304314292|ref|YP_003849439.1| DNA-directed RNA polymerase subunit K [Methanothermobacter
marburgensis str. Marburg]
gi|302587751|gb|ADL58126.1| DNA-directed RNA polymerase subunit K [Methanothermobacter
marburgensis str. Marburg]
Length = 59
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+ERAR++G RALQI+M A V+++ DP+ IA KEL+ + +P+ +RR
Sbjct: 5 KLTRFERARLIGARALQISMGARPQVDIQESLDPVDIARKELEKKVMPLDVRR 57
>gi|227830274|ref|YP_002832054.1| DNA-directed RNA polymerase subunit K [Sulfolobus islandicus
L.S.2.15]
gi|229579099|ref|YP_002837497.1| DNA-directed RNA polymerase subunit K [Sulfolobus islandicus
Y.G.57.14]
gi|229582160|ref|YP_002840559.1| DNA-directed RNA polymerase subunit K [Sulfolobus islandicus
Y.N.15.51]
gi|284997697|ref|YP_003419464.1| RNA polymerase Rpb6 [Sulfolobus islandicus L.D.8.5]
gi|227456722|gb|ACP35409.1| RNA polymerase Rpb6 [Sulfolobus islandicus L.S.2.15]
gi|228009813|gb|ACP45575.1| RNA polymerase Rpb6 [Sulfolobus islandicus Y.G.57.14]
gi|228012876|gb|ACP48637.1| RNA polymerase Rpb6 [Sulfolobus islandicus Y.N.15.51]
gi|284445592|gb|ADB87094.1| RNA polymerase Rpb6 [Sulfolobus islandicus L.D.8.5]
Length = 87
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPD 136
K RYE ARV+ RALQ+AM AP ++++ TD + IA +E K +PI IRR LP+
Sbjct: 18 KLTRYEIARVISARALQLAMGAPALIDINNISLTDVISIAEEEFKRGVLPITIRRRLPN 76
>gi|333987640|ref|YP_004520247.1| RNA polymerase Rpb6 [Methanobacterium sp. SWAN-1]
gi|333825784|gb|AEG18446.1| RNA polymerase Rpb6 [Methanobacterium sp. SWAN-1]
Length = 57
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+E+ARV+G RALQ++M A V++ DP+ IA ELK K+P+ ++R
Sbjct: 5 KLTRFEKARVIGARALQLSMGAKPQVDVSASIDPIDIATLELKKNKLPLDVKR 57
>gi|448425444|ref|ZP_21582774.1| DNA-directed RNA polymerase subunit K [Halorubrum terrestre JCM
10247]
gi|448453311|ref|ZP_21593754.1| DNA-directed RNA polymerase subunit K [Halorubrum litoreum JCM
13561]
gi|448485421|ref|ZP_21606646.1| DNA-directed RNA polymerase subunit K [Halorubrum arcis JCM 13916]
gi|448504674|ref|ZP_21614015.1| DNA-directed RNA polymerase subunit K [Halorubrum distributum JCM
9100]
gi|448519091|ref|ZP_21617867.1| DNA-directed RNA polymerase subunit K [Halorubrum distributum JCM
10118]
gi|445680515|gb|ELZ32958.1| DNA-directed RNA polymerase subunit K [Halorubrum terrestre JCM
10247]
gi|445701884|gb|ELZ53856.1| DNA-directed RNA polymerase subunit K [Halorubrum distributum JCM
9100]
gi|445704107|gb|ELZ56025.1| DNA-directed RNA polymerase subunit K [Halorubrum distributum JCM
10118]
gi|445807631|gb|EMA57714.1| DNA-directed RNA polymerase subunit K [Halorubrum litoreum JCM
13561]
gi|445818075|gb|EMA67942.1| DNA-directed RNA polymerase subunit K [Halorubrum arcis JCM 13916]
Length = 58
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV+++ + +T+P+ +A +E A +P +RR
Sbjct: 8 RYEKARILGARALQVSYGAPVLIDTD-QTEPILVAAEEYDAGALPFTVRR 56
>gi|237823483|pdb|2WAQ|K Chain K, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823498|pdb|2WB1|I Chain I, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823500|pdb|2WB1|K Chain K, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
Length = 95
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPD 136
RYE ARV+ RALQ+AM AP ++++ TD + IA +E + +PI IRR LP+
Sbjct: 29 RYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPITIRRRLPN 84
>gi|257076296|ref|ZP_05570657.1| DNA-directed RNA polymerase subunit K [Ferroplasma acidarmanus
fer1]
Length = 56
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGE-TDPLQIAMKELKARKIPIIIRR 132
++E+AR++G RALQIAM APV++++ + DP+ IA+ E IPI IRR
Sbjct: 5 KFEKARIIGARALQIAMGAPVILDVSPDMIDPIDIAIFEFDNGVIPITIRR 55
>gi|448592483|ref|ZP_21651590.1| DNA-directed RNA polymerase subunit K [Haloferax elongans ATCC
BAA-1513]
gi|445731488|gb|ELZ83072.1| DNA-directed RNA polymerase subunit K [Haloferax elongans ATCC
BAA-1513]
Length = 57
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV+VE + +T+P+ IA +E A +P ++R
Sbjct: 6 RYEKARILGARALQVSYGAPVLVESD-QTEPILIAAEEYDAGVLPFTVKR 54
>gi|448314279|ref|ZP_21503979.1| DNA-directed RNA polymerase subunit K [Natronolimnobius
innermongolicus JCM 12255]
gi|445595539|gb|ELY49645.1| DNA-directed RNA polymerase subunit K [Natronolimnobius
innermongolicus JCM 12255]
Length = 58
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV+VE + ++ P+ IA +E A +P ++R
Sbjct: 7 RYEKARILGARALQVSYGAPVLVETD-QSQPILIAAEEYDAGALPFTVKR 55
>gi|18285650|sp|Q9YDJ9.2|RPOK_AERPE RecName: Full=DNA-directed RNA polymerase subunit K
Length = 89
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDNSYE 140
+YERAR++G RA Q+++ AP +V+ E G +PL IA E+ +P+ I RYLP +
Sbjct: 10 KYERARIIGVRAFQLSIGAPPLVDPERAGSRNPLDIARYEVDNGILPVSIYRYLPGGGGQ 69
Query: 141 DWGIDEL 147
+ L
Sbjct: 70 SLSLSRL 76
>gi|448583264|ref|ZP_21646620.1| DNA-directed RNA polymerase subunit K [Haloferax gibbonsii ATCC
33959]
gi|445729493|gb|ELZ81088.1| DNA-directed RNA polymerase subunit K [Haloferax gibbonsii ATCC
33959]
Length = 57
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV+V+ E +T+P+ IA +E A +P ++R
Sbjct: 6 RYEKARILGARALQVSYGAPVLVDSE-QTEPILIAAEEYDAGVLPFTVKR 54
>gi|15897794|ref|NP_342399.1| DNA-directed RNA polymerase subunit K [Sulfolobus solfataricus P2]
gi|284175597|ref|ZP_06389566.1| DNA-directed RNA polymerase subunit K [Sulfolobus solfataricus
98/2]
gi|384434343|ref|YP_005643701.1| RNA polymerase Rpb6 [Sulfolobus solfataricus 98/2]
gi|15214257|sp|Q97ZJ9.1|RPOK_SULSO RecName: Full=DNA-directed RNA polymerase subunit K
gi|167744888|pdb|2PMZ|K Chain K, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744899|pdb|2PMZ|W Chain W, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782151|pdb|3HKZ|K Chain K, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782164|pdb|3HKZ|U Chain U, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|13814087|gb|AAK41189.1| DNA-directed RNA polymerase subunit K (rpoK) [Sulfolobus
solfataricus P2]
gi|261602497|gb|ACX92100.1| RNA polymerase Rpb6 [Sulfolobus solfataricus 98/2]
Length = 95
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPD 136
RYE ARV+ RALQ+AM AP ++++ TD + IA +E + +PI IRR LP+
Sbjct: 29 RYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPITIRRRLPN 84
>gi|292656893|ref|YP_003536790.1| DNA-directed RNA polymerase subunit K [Haloferax volcanii DS2]
gi|433418970|ref|ZP_20405129.1| DNA-directed RNA polymerase subunit K [Haloferax sp. BAB2207]
gi|448290893|ref|ZP_21482038.1| DNA-directed RNA polymerase subunit K [Haloferax volcanii DS2]
gi|448546353|ref|ZP_21626517.1| DNA-directed RNA polymerase subunit K [Haloferax sp. ATCC BAA-646]
gi|448548340|ref|ZP_21627607.1| DNA-directed RNA polymerase subunit K [Haloferax sp. ATCC BAA-645]
gi|448557534|ref|ZP_21632723.1| DNA-directed RNA polymerase subunit K [Haloferax sp. ATCC BAA-644]
gi|448568225|ref|ZP_21637802.1| DNA-directed RNA polymerase subunit K [Haloferax lucentense DSM
14919]
gi|448600834|ref|ZP_21656213.1| DNA-directed RNA polymerase subunit K [Haloferax alexandrinus JCM
10717]
gi|448602313|ref|ZP_21656369.1| DNA-directed RNA polymerase subunit K [Haloferax sulfurifontis ATCC
BAA-897]
gi|448622868|ref|ZP_21669517.1| DNA-directed RNA polymerase subunit K [Haloferax denitrificans ATCC
35960]
gi|291371640|gb|ADE03867.1| DNA-directed RNA polymerase subunit K [Haloferax volcanii DS2]
gi|432199578|gb|ELK55739.1| DNA-directed RNA polymerase subunit K [Haloferax sp. BAB2207]
gi|445577946|gb|ELY32366.1| DNA-directed RNA polymerase subunit K [Haloferax volcanii DS2]
gi|445702806|gb|ELZ54746.1| DNA-directed RNA polymerase subunit K [Haloferax sp. ATCC BAA-646]
gi|445714091|gb|ELZ65858.1| DNA-directed RNA polymerase subunit K [Haloferax sp. ATCC BAA-644]
gi|445714435|gb|ELZ66197.1| DNA-directed RNA polymerase subunit K [Haloferax sp. ATCC BAA-645]
gi|445727175|gb|ELZ78789.1| DNA-directed RNA polymerase subunit K [Haloferax lucentense DSM
14919]
gi|445734847|gb|ELZ86403.1| DNA-directed RNA polymerase subunit K [Haloferax alexandrinus JCM
10717]
gi|445747828|gb|ELZ99282.1| DNA-directed RNA polymerase subunit K [Haloferax sulfurifontis ATCC
BAA-897]
gi|445753376|gb|EMA04793.1| DNA-directed RNA polymerase subunit K [Haloferax denitrificans ATCC
35960]
Length = 58
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV+V+ E +T+P+ IA +E A +P ++R
Sbjct: 7 RYEKARILGARALQVSYGAPVLVDSE-QTEPILIAAEEYDAGVLPFTVKR 55
>gi|13542056|ref|NP_111744.1| DNA-directed RNA polymerase subunit K [Thermoplasma volcanium GSS1]
gi|15214256|sp|P58232.1|RPOK_THEVO RecName: Full=DNA-directed RNA polymerase subunit K
gi|14325487|dbj|BAB60391.1| DNA-directed RNA polymerase K [Thermoplasma volcanium GSS1]
Length = 61
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVEL-EGETDPLQIAMKELKARKIPIIIRR 132
K ++E+AR++G RALQIAM APV++++ + DP+ IA E + IPI I+R
Sbjct: 2 KYTKFEKARIIGARALQIAMGAPVIIDIPKNVIDPVDIATIEFENNVIPITIKR 55
>gi|448565314|ref|ZP_21636181.1| DNA-directed RNA polymerase subunit K [Haloferax prahovense DSM
18310]
gi|445715058|gb|ELZ66814.1| DNA-directed RNA polymerase subunit K [Haloferax prahovense DSM
18310]
Length = 58
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV+V+ E +T+P+ IA +E A +P ++R
Sbjct: 7 RYEKARILGARALQVSYGAPVLVDSE-QTEPILIAAEEYDAGVLPFTVKR 55
>gi|76802064|ref|YP_327072.1| DNA-directed RNA polymerase subunit K [Natronomonas pharaonis DSM
2160]
gi|76557929|emb|CAI49513.1| DNA-directed RNA polymerase subunit K [Natronomonas pharaonis DSM
2160]
Length = 57
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV++E + +T+P+ +A +E A +P + R
Sbjct: 6 RYEKARILGARALQVSYGAPVLIETD-QTEPILVAAEEYDADALPFTVHR 54
>gi|322369529|ref|ZP_08044094.1| RNA polymerase Rpb6 [Haladaptatus paucihalophilus DX253]
gi|320551261|gb|EFW92910.1| RNA polymerase Rpb6 [Haladaptatus paucihalophilus DX253]
Length = 60
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV++E + E+ P+ IA +E A +P +RR
Sbjct: 8 RYEKARILGARALQVSYGAPVLIETQ-ESQPILIAAEEYDAGVLPFSVRR 56
>gi|57641433|ref|YP_183911.1| DNA-directed RNA polymerase subunit K [Thermococcus kodakarensis
KOD1]
gi|73917887|sp|Q5JJD0.1|RPOK_PYRKO RecName: Full=DNA-directed RNA polymerase subunit K
gi|57159757|dbj|BAD85687.1| DNA-directed RNA polymerase, subunit K [Thermococcus kodakarensis
KOD1]
Length = 57
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
R+E+AR++G RALQIAM APV++++ PLQ A+ E + IPI + R
Sbjct: 6 RFEKARIIGARALQIAMGAPVLIDVPEGITPLQAALLEFEKGVIPITVIR 55
>gi|284165817|ref|YP_003404096.1| RNA polymerase Rpb6 [Haloterrigena turkmenica DSM 5511]
gi|284015472|gb|ADB61423.1| RNA polymerase Rpb6 [Haloterrigena turkmenica DSM 5511]
Length = 61
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQI+ APV+V+ + +++P+ IA +E A +P ++R
Sbjct: 8 RYEKARILGARALQISYGAPVLVDTD-QSEPILIAAEEYDAGALPFTVKR 56
>gi|14601067|ref|NP_147593.1| DNA-directed RNA polymerase subunit K [Aeropyrum pernix K1]
gi|5104583|dbj|BAA79898.1| DNA-directed RNA polymerase subunit K [Aeropyrum pernix K1]
Length = 103
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDNSYE 140
+YERAR++G RA Q+++ AP +V+ E G +PL IA E+ +P+ I RYLP +
Sbjct: 24 KYERARIIGVRAFQLSIGAPPLVDPERAGSRNPLDIARYEVDNGILPVSIYRYLPGGGGQ 83
Query: 141 DWGIDEL 147
+ L
Sbjct: 84 SLSLSRL 90
>gi|223477708|ref|YP_002582347.1| DNA-directed RNA polymerase subunit K [Thermococcus sp. AM4]
gi|240104018|ref|YP_002960327.1| DNA-directed RNA polymerase subunit K [Thermococcus gammatolerans
EJ3]
gi|259494224|sp|C5A244.1|RPOK_THEGJ RecName: Full=DNA-directed RNA polymerase subunit K
gi|214032934|gb|EEB73762.1| DNA-directed RNA polymerase subunit K [Thermococcus sp. AM4]
gi|239911572|gb|ACS34463.1| DNA-directed RNA polymerase subunit K (rpoK) [Thermococcus
gammatolerans EJ3]
Length = 57
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
R+E+AR++G RALQIA+ APV+V++ + PLQ A+ E + IPI + R
Sbjct: 6 RFEKARIIGARALQIALGAPVLVDVPEGSTPLQAAIIEFEKGIIPITVIR 55
>gi|84489663|ref|YP_447895.1| RpoK [Methanosphaera stadtmanae DSM 3091]
gi|84372982|gb|ABC57252.1| RpoK [Methanosphaera stadtmanae DSM 3091]
Length = 63
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 35/46 (76%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPI 128
R+ERAR++G+RALQI+M A +VE + DP++IA+KE + IP+
Sbjct: 8 RFERARLIGSRALQISMGANPLVEFTPDQDPIKIAIKEYEEGVIPL 53
>gi|300711106|ref|YP_003736920.1| RNA polymerase Rpb6 [Halalkalicoccus jeotgali B3]
gi|448296795|ref|ZP_21486846.1| DNA-directed RNA polymerase subunit K [Halalkalicoccus jeotgali B3]
gi|299124789|gb|ADJ15128.1| RNA polymerase Rpb6 [Halalkalicoccus jeotgali B3]
gi|445580778|gb|ELY35152.1| DNA-directed RNA polymerase subunit K [Halalkalicoccus jeotgali B3]
Length = 59
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV++E + +++P+ IA +E A +P ++R
Sbjct: 8 RYEKARILGARALQVSYGAPVLIETD-QSEPILIAAEEYDAGALPFTVKR 56
>gi|336252147|ref|YP_004595254.1| DNA-directed RNA polymerase subunit K [Halopiger xanaduensis SH-6]
gi|335336136|gb|AEH35375.1| DNA-directed RNA polymerase subunit K [Halopiger xanaduensis SH-6]
Length = 59
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV++E + +T P+ IA +E A +P ++R
Sbjct: 8 RYEKARILGARALQVSYGAPVLIETD-QTQPILIAAEEYDAGVLPFTVKR 56
>gi|448298711|ref|ZP_21488738.1| RNA polymerase Rpb6 [Natronorubrum tibetense GA33]
gi|445591013|gb|ELY45224.1| RNA polymerase Rpb6 [Natronorubrum tibetense GA33]
Length = 61
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV++E + +T+P+ IA +E A +P ++R
Sbjct: 8 RYEKARILGARALQVSYGAPVLIETK-QTEPILIAAEEYDAGVLPFTVKR 56
>gi|14520751|ref|NP_126226.1| DNA-directed RNA polymerase subunit K [Pyrococcus abyssi GE5]
gi|14591752|ref|NP_143483.1| DNA-directed RNA polymerase subunit K [Pyrococcus horikoshii OT3]
gi|48429125|sp|P62014.1|RPOK_PYRAB RecName: Full=DNA-directed RNA polymerase subunit K
gi|48429126|sp|P62015.1|RPOK_PYRHO RecName: Full=DNA-directed RNA polymerase subunit K
gi|5457967|emb|CAB49457.1| rpoK DNA-directed RNA polymerase, subunit K [Pyrococcus abyssi GE5]
gi|380741290|tpe|CCE69924.1| TPA: DNA-directed RNA polymerase subunit K [Pyrococcus abyssi GE5]
Length = 57
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+E+AR++G RALQIAM APV++++ PL+ A+ E + IPI + R
Sbjct: 3 KYTRFEKARIIGARALQIAMGAPVLIDVPEGITPLEAAIMEFEKGVIPITVIR 55
>gi|315425267|dbj|BAJ46935.1| DNA-directed RNA polymerase II subunit F [Candidatus Caldiarchaeum
subterraneum]
gi|343484345|dbj|BAJ49999.1| DNA-directed RNA polymerase subunit K [Candidatus Caldiarchaeum
subterraneum]
Length = 85
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%)
Query: 78 NIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 137
++ +YE+AR++G RALQ+++ A +VE+ + IA +E + +PIIIRR D
Sbjct: 12 QLRLTKYEKARIIGGRALQLSLGAFPLVEVRPGESNIDIAKREFERGVLPIIIRRKRFDG 71
Query: 138 SYEDWGIDEL 147
SY D + EL
Sbjct: 72 SYVDIPLKEL 81
>gi|448727618|ref|ZP_21709967.1| DNA-directed RNA polymerase subunit K [Halococcus morrhuae DSM
1307]
gi|445789604|gb|EMA40283.1| DNA-directed RNA polymerase subunit K [Halococcus morrhuae DSM
1307]
Length = 61
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR++G RALQIA APV+V E T+P+ IA +E A +P ++R
Sbjct: 10 RYEKARIIGARALQIAYGAPVLVGTES-TEPILIAAEEYDADVLPFTVKR 58
>gi|448317553|ref|ZP_21507103.1| DNA-directed RNA polymerase subunit K [Natronococcus jeotgali DSM
18795]
gi|445602944|gb|ELY56914.1| DNA-directed RNA polymerase subunit K [Natronococcus jeotgali DSM
18795]
Length = 60
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQI+ APV++E + ++P+ IA +E A +P +RR
Sbjct: 8 RYEKARILGARALQISYGAPVLIETD-RSEPILIAAEEYDADVLPFTVRR 56
>gi|110668829|ref|YP_658640.1| DNA-directed RNA polymerase subunit K [Haloquadratum walsbyi DSM
16790]
gi|385804347|ref|YP_005840747.1| DNA-directed RNA polymerase subunit K [Haloquadratum walsbyi C23]
gi|109626576|emb|CAJ53040.1| DNA-directed RNA polymerase subunit K [Haloquadratum walsbyi DSM
16790]
gi|339729839|emb|CCC41122.1| DNA-directed RNA polymerase subunit K [Haloquadratum walsbyi C23]
Length = 65
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 5/66 (7%)
Query: 67 SKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKI 126
S +Q N RYE+AR+LG RALQI+ APV+V+ E +++P+ +A +E A +
Sbjct: 2 SHSQTHTQPTYN----RYEKARILGARALQISYGAPVLVDTE-QSEPILVAAEEYDAGVL 56
Query: 127 PIIIRR 132
P +++
Sbjct: 57 PFTVKQ 62
>gi|18313953|ref|NP_560620.1| DNA-directed RNA polymerase subunit K [Pyrobaculum aerophilum str.
IM2]
gi|20178079|sp|Q8ZTF9.1|RPOK_PYRAE RecName: Full=DNA-directed RNA polymerase subunit K
gi|18161525|gb|AAL64802.1| DNA-directed RNA polymerase subunit [Pyrobaculum aerophilum str.
IM2]
Length = 106
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDNSYE 140
+YE AR++G RALQ+AM A +V+++ G DP+ IAM+EL+ + II R +PD
Sbjct: 33 KYETARIIGARALQLAMGAQPLVDIQEVGSVDPVLIAMEELRRGLLDFIIVREMPDGKTM 92
Query: 141 DWGIDELKIIDR 152
+ EL ++R
Sbjct: 93 RIRLKELLELER 104
>gi|448303021|ref|ZP_21492971.1| DNA-directed RNA polymerase subunit K [Natronorubrum sulfidifaciens
JCM 14089]
gi|445594028|gb|ELY48195.1| DNA-directed RNA polymerase subunit K [Natronorubrum sulfidifaciens
JCM 14089]
Length = 59
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQI+ APV+VE +++P+ IA +E A +P ++R
Sbjct: 8 RYEKARILGARALQISYGAPVLVET-NQSEPILIAAEEYDAGVLPFTVKR 56
>gi|345004802|ref|YP_004807655.1| DNA-directed RNA polymerase subunit K [halophilic archaeon DL31]
gi|344320428|gb|AEN05282.1| DNA-directed RNA polymerase subunit K [halophilic archaeon DL31]
Length = 58
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR++G RALQ++ APV+V+ E T+P IA +E A +P +RR
Sbjct: 7 RYEKARIIGARALQLSYGAPVLVDTET-TEPYLIAAEEYDADVLPFTVRR 55
>gi|315427444|dbj|BAJ49050.1| DNA-directed RNA polymerase subunit K [Candidatus Caldiarchaeum
subterraneum]
gi|315427477|dbj|BAJ49081.1| DNA-directed RNA polymerase subunit K [Candidatus Caldiarchaeum
subterraneum]
Length = 85
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YE+AR++G RALQ++ A +VE+ + IA +E + +PIIIRR D SY D
Sbjct: 17 KYEKARIIGGRALQLSFGAFPLVEVRPGESNIDIAKREFERGVLPIIIRRKRFDGSYVDI 76
Query: 143 GIDEL 147
+ EL
Sbjct: 77 PLKEL 81
>gi|409722490|ref|ZP_11269938.1| RNA polymerase Rpb6 [Halococcus hamelinensis 100A6]
gi|448724491|ref|ZP_21706998.1| RNA polymerase Rpb6 [Halococcus hamelinensis 100A6]
gi|445785808|gb|EMA36594.1| RNA polymerase Rpb6 [Halococcus hamelinensis 100A6]
Length = 61
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 77 LNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
+N + RYE+AR++G RALQIA APV+V+ E T+P+ IA +E A +P + R
Sbjct: 4 VNQRYNRYEKARIIGARALQIAYGAPVLVQTES-TEPILIAAEEYDADVLPFTVWR 58
>gi|257053580|ref|YP_003131413.1| RNA polymerase Rpb6 [Halorhabdus utahensis DSM 12940]
gi|335433583|ref|ZP_08558403.1| RNA polymerase Rpb6 [Halorhabdus tiamatea SARL4B]
gi|256692343|gb|ACV12680.1| RNA polymerase Rpb6 [Halorhabdus utahensis DSM 12940]
gi|334898589|gb|EGM36693.1| RNA polymerase Rpb6 [Halorhabdus tiamatea SARL4B]
Length = 58
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ+A APV+++ + +T P+ IA +E A +P + R
Sbjct: 8 RYEKARILGARALQVAYGAPVLIDTD-QTQPILIAAEEYDAGVLPFTVNR 56
>gi|289580112|ref|YP_003478578.1| RNA polymerase Rpb6 [Natrialba magadii ATCC 43099]
gi|448281351|ref|ZP_21472657.1| RNA polymerase Rpb6 [Natrialba magadii ATCC 43099]
gi|448352734|ref|ZP_21541515.1| RNA polymerase Rpb6 [Natrialba hulunbeirensis JCM 10989]
gi|448358764|ref|ZP_21547440.1| RNA polymerase Rpb6 [Natrialba chahannaoensis JCM 10990]
gi|289529665|gb|ADD04016.1| RNA polymerase Rpb6 [Natrialba magadii ATCC 43099]
gi|445578773|gb|ELY33173.1| RNA polymerase Rpb6 [Natrialba magadii ATCC 43099]
gi|445642013|gb|ELY95084.1| RNA polymerase Rpb6 [Natrialba hulunbeirensis JCM 10989]
gi|445644778|gb|ELY97787.1| RNA polymerase Rpb6 [Natrialba chahannaoensis JCM 10990]
Length = 58
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV+ E + +T+P+ IA +E A +P ++R
Sbjct: 8 RYEKARILGARALQVSYGAPVLTESD-QTEPILIAAEEYDAGVLPFTVKR 56
>gi|448306196|ref|ZP_21496105.1| DNA-directed RNA polymerase subunit K [Natronorubrum bangense JCM
10635]
gi|445598610|gb|ELY52665.1| DNA-directed RNA polymerase subunit K [Natronorubrum bangense JCM
10635]
Length = 59
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQI+ APV++E + +++P+ +A +E A +P ++R
Sbjct: 8 RYEKARILGARALQISYGAPVLIETD-QSEPILVAAEEYDAGVLPFTVKR 56
>gi|390960755|ref|YP_006424589.1| DNA-directed RNA polymerase subunit K [Thermococcus sp. CL1]
gi|390519063|gb|AFL94795.1| DNA-directed RNA polymerase subunit K [Thermococcus sp. CL1]
Length = 57
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 79 IKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+E+AR++G RALQIAM AP+++++ PL AM E + IP+ + R
Sbjct: 2 FKYTRFEKARIIGARALQIAMGAPILIDVPEGVTPLDAAMLEFEKGIIPLTVIR 55
>gi|375083500|ref|ZP_09730520.1| DNA-directed RNA polymerase subunit K [Thermococcus litoralis DSM
5473]
gi|374741827|gb|EHR78245.1| DNA-directed RNA polymerase subunit K [Thermococcus litoralis DSM
5473]
Length = 57
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
R+E+AR++G RALQIAM APV++++ PL+ A+ E + IPI + R
Sbjct: 6 RFEKARIIGARALQIAMGAPVLIDVPEGATPLEAAIMEFEKGIIPITVIR 55
>gi|18978014|ref|NP_579371.1| DNA-directed RNA polymerase subunit K [Pyrococcus furiosus DSM
3638]
gi|397652709|ref|YP_006493290.1| DNA-directed RNA polymerase subunit K [Pyrococcus furiosus COM1]
gi|23822103|sp|Q8U0E8.1|RPOK_PYRFU RecName: Full=DNA-directed RNA polymerase subunit K
gi|18893795|gb|AAL81766.1| DNA-directed RNA polymerase subunit k [Pyrococcus furiosus DSM
3638]
gi|393190300|gb|AFN04998.1| DNA-directed RNA polymerase subunit K [Pyrococcus furiosus COM1]
Length = 57
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+E+AR++G RALQI+M APV++++ PL+ A+ E + IPI + R
Sbjct: 3 KYTRFEKARIIGARALQISMGAPVLIDVPPGITPLEAAILEFEKGVIPITVIR 55
>gi|305663583|ref|YP_003859871.1| DNA-directed RNA polymerase subunit K [Ignisphaera aggregans DSM
17230]
gi|304378152|gb|ADM27991.1| DNA-directed RNA polymerase, subunit K [Ignisphaera aggregans DSM
17230]
Length = 117
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRRYLPDNSYE 140
+YE+AR++ RALQ+AM AP ++++ DP+ IA +EL +PI+I+R P+ Y+
Sbjct: 25 KYEKARIVAARALQLAMGAPPLIDISSLQNKDPVIIAERELLLGVLPILIKREKPNGEYQ 84
>gi|296241913|ref|YP_003649400.1| RNA polymerase Rpb6 [Thermosphaera aggregans DSM 11486]
gi|296094497|gb|ADG90448.1| RNA polymerase Rpb6 [Thermosphaera aggregans DSM 11486]
Length = 107
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGET--DPLQIAMKELKARKIPIIIRRYLPDNSYE 140
R+E AR++G RALQ+++ AP ++++ DP+ +A+ EL +P+ IRR + D YE
Sbjct: 19 RFELARIIGARALQLSLGAPTLIDVASLPIKDPVAVAIYELLKTSLPMSIRRRIEDGKYE 78
>gi|448414201|ref|ZP_21577340.1| DNA-directed RNA polymerase, subunit k [Halosarcina pallida JCM
14848]
gi|445682494|gb|ELZ34911.1| DNA-directed RNA polymerase, subunit k [Halosarcina pallida JCM
14848]
Length = 58
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV+++ + +++P+ IA +E A +P +RR
Sbjct: 7 RYEKARILGARALQVSYGAPVLLDTD-QSEPILIAAEEYDAGVLPFTVRR 55
>gi|302796815|ref|XP_002980169.1| hypothetical protein SELMODRAFT_419773 [Selaginella moellendorffii]
gi|300152396|gb|EFJ19039.1| hypothetical protein SELMODRAFT_419773 [Selaginella moellendorffii]
Length = 523
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 5/55 (9%)
Query: 64 KVKSKNQIKNNNKLNIKQIRYERARVLGTRA-LQIAMCAPVMVELEGETDPLQIA 117
++KSK ++ + L +YERARVLGT A M APVM ELEGETDP +IA
Sbjct: 39 RLKSKKTMRKHWNLT----KYERARVLGTWASWSCYMNAPVMAELEGETDPFEIA 89
>gi|341582022|ref|YP_004762514.1| DNA-directed RNA polymerase subunit K [Thermococcus sp. 4557]
gi|340809680|gb|AEK72837.1| DNA-directed RNA polymerase subunit K [Thermococcus sp. 4557]
Length = 57
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+E+AR++G RALQIAM AP+++++ PL AM E + IP+ + R
Sbjct: 3 KYTRFEKARIIGARALQIAMGAPILIDVPEGITPLDAAMLEFEKGIIPLTVIR 55
>gi|448712008|ref|ZP_21701551.1| DNA-directed RNA polymerase subunit K [Halobiforma nitratireducens
JCM 10879]
gi|445791093|gb|EMA41742.1| DNA-directed RNA polymerase subunit K [Halobiforma nitratireducens
JCM 10879]
Length = 58
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV++E + + +P+ IA +E A +P ++R
Sbjct: 7 RYEKARILGARALQVSYGAPVLIETD-QAEPILIAAEEYDAGVLPFTVKR 55
>gi|315229900|ref|YP_004070336.1| DNA-directed RNA polymerase subunit K [Thermococcus barophilus MP]
gi|315182928|gb|ADT83113.1| DNA-directed RNA polymerase subunit K [Thermococcus barophilus MP]
Length = 57
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+E+AR++G RALQIAM APV++++ PL A+ E + IPI + R
Sbjct: 3 KYTRFEKARIIGARALQIAMGAPVLIDVPEGITPLDAAILEFEKGIIPITVIR 55
>gi|374633680|ref|ZP_09706045.1| DNA-directed RNA polymerase, subunit K/omega [Metallosphaera
yellowstonensis MK1]
gi|373523468|gb|EHP68388.1| DNA-directed RNA polymerase, subunit K/omega [Metallosphaera
yellowstonensis MK1]
Length = 96
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 84 YERARVLGTRALQIAMCAPVMVELEGE----TDPLQIAMKELKARKIPIIIRRYLPDNSY 139
YERAR++ RALQ+AM A ++++ + ++IA +ELKAR +PI +RR P+
Sbjct: 28 YERARIVSARALQLAMGAAPLIDVVSSGLVNSSSIRIAEEELKARLLPISVRRRFPNGKI 87
Query: 140 E 140
E
Sbjct: 88 E 88
>gi|385806035|ref|YP_005842433.1| DNA-directed RNA polymerase subunit K [Fervidicoccus fontis Kam940]
gi|383795898|gb|AFH42981.1| DNA-directed RNA polymerase subunit K [Fervidicoccus fontis Kam940]
Length = 98
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 66 KSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEG-ETDPLQIAMKELKAR 124
KS +I KL R+ERAR++G RALQ++M AP +++ DP+ IA KEL+
Sbjct: 7 KSPEEIIPPKKLT----RFERARIIGARALQLSMGAPPFIDVSNLPKDPIIIAEKELEMG 62
Query: 125 KIPIIIRRYL 134
+P+ I R+L
Sbjct: 63 VLPLTIVRWL 72
>gi|212223256|ref|YP_002306492.1| DNA-directed RNA polymerase subunit K [Thermococcus onnurineus NA1]
gi|229564220|sp|B6YSQ8.1|RPOK_THEON RecName: Full=DNA-directed RNA polymerase subunit K
gi|212008213|gb|ACJ15595.1| rpoK DNA-directed RNA polymerase, subunit K [Thermococcus
onnurineus NA1]
Length = 57
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 79 IKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+ERAR++G RALQIAM AP+++++ PL A+ E + IP+ + R
Sbjct: 2 FKYTRFERARIVGARALQIAMGAPILIDVPEGITPLDAALLEFEKGIIPLTVIR 55
>gi|356506604|ref|XP_003522068.1| PREDICTED: uncharacterized protein LOC100820517 [Glycine max]
Length = 210
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 29/37 (78%), Gaps = 1/37 (2%)
Query: 83 RYERARVLGTRALQIAMC-APVMVELEGETDPLQIAM 118
+YE AR+LGT ALQI PVMVELEGETDPL++ +
Sbjct: 65 KYEHARILGTCALQIRFYDVPVMVELEGETDPLEVDL 101
>gi|298205310|ref|YP_003717788.1| DNA-directed RNA polymerase subunit K [Nanoarchaeum equitans
Kin4-M]
Length = 70
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 6/66 (9%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGET------DPLQIAMKELKARKIPIIIRRYLPD 136
+YE+AR++G RA+QIA AP++++++ ET P++IA E + IPI + R +P
Sbjct: 4 KYEKARIIGIRAMQIAQGAPILIKIDKETLKKINYSPIEIAKMEFEKGAIPIKVIRKIPV 63
Query: 137 NSYEDW 142
+ ++
Sbjct: 64 KPHINF 69
>gi|171185975|ref|YP_001794894.1| DNA-directed RNA polymerase subunit K [Pyrobaculum neutrophilum
V24Sta]
gi|170935187|gb|ACB40448.1| RNA polymerase Rpb6 [Pyrobaculum neutrophilum V24Sta]
Length = 109
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDN 137
+YE AR+LG RA+Q+AM A +V++ G TDP+ IA +ELK + II R LPD
Sbjct: 36 KYEIARILGARAMQLAMGAQPLVDVRELGTTDPVLIAAEELKRGLLDFIIVRELPDG 92
>gi|297527158|ref|YP_003669182.1| RNA polymerase Rpb6 [Staphylothermus hellenicus DSM 12710]
gi|297256074|gb|ADI32283.1| RNA polymerase Rpb6 [Staphylothermus hellenicus DSM 12710]
Length = 104
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGET--DPLQIAMKELKARKIPIIIRRYLPDNSYE 140
R+E ARV+G RALQ+++ AP ++ E DP+ IA+ EL +P+ I+R +P+ YE
Sbjct: 16 RFEIARVIGARALQLSLGAPPLINPEEAPVKDPVAIAILELLKGLLPMTIKRMMPNGEYE 75
>gi|374326812|ref|YP_005085012.1| DNA-directed RNA polymerase subunit K [Pyrobaculum sp. 1860]
gi|356642081|gb|AET32760.1| DNA-directed RNA polymerase subunit K [Pyrobaculum sp. 1860]
Length = 109
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDNSYE 140
+YE AR++G RA+Q+AM A +V+++ G TDP+ IAM+EL+ + +I R PD
Sbjct: 36 KYEVARIIGARAIQLAMGAQPLVDVQEVGTTDPVLIAMEELRRGLLDFVIVRETPDGKTT 95
Query: 141 DWGIDEL 147
+ EL
Sbjct: 96 RIRLKEL 102
>gi|332157859|ref|YP_004423138.1| DNA-directed RNA polymerase subunit K [Pyrococcus sp. NA2]
gi|331033322|gb|AEC51134.1| DNA-directed RNA polymerase subunit K [Pyrococcus sp. NA2]
Length = 57
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+E+AR++G RALQIAM AP+++++ PL A+ E + IPI + R
Sbjct: 3 KYTRFEKARIIGARALQIAMGAPILIDVPEGITPLDAAIMEFERGVIPITVIR 55
>gi|337283754|ref|YP_004623228.1| DNA-directed RNA polymerase subunit K [Pyrococcus yayanosii CH1]
gi|334899688|gb|AEH23956.1| DNA-directed RNA polymerase subunit K [Pyrococcus yayanosii CH1]
Length = 57
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+E+AR++G RALQI+M AP+++++ PL+ A+ E + IPI + R
Sbjct: 3 KYTRFEKARIIGARALQISMGAPILIDVPEGITPLEAAILEFEKGVIPITVIR 55
>gi|448733722|ref|ZP_21715964.1| RNA polymerase Rpb6 [Halococcus salifodinae DSM 8989]
gi|445802242|gb|EMA52549.1| RNA polymerase Rpb6 [Halococcus salifodinae DSM 8989]
Length = 58
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR++G RALQIA APV+V + T+P+ IA +E A +P + R
Sbjct: 7 RYEKARIIGARALQIAYGAPVLVGTD-STEPILIAAEEYDAGVLPFTVNR 55
>gi|357289732|gb|AET73045.1| hypothetical protein PGAG_00156 [Phaeocystis globosa virus 12T]
gi|357292532|gb|AET73868.1| hypothetical protein PGBG_00160 [Phaeocystis globosa virus 14T]
Length = 218
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCA-PVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
+YE+ R++G R Q+ A P + E D IA KELK +KIP II+R + +N++E
Sbjct: 150 KYEKTRIIGIRLKQLNNGAEPYIKVAEDIIDNNYIAEKELKLKKIPFIIQRPIANNTFEY 209
Query: 142 WGIDELKII 150
W +++L+I+
Sbjct: 210 WRLEDLEIL 218
>gi|448728481|ref|ZP_21710809.1| RNA polymerase Rpb6 [Halococcus saccharolyticus DSM 5350]
gi|445796963|gb|EMA47448.1| RNA polymerase Rpb6 [Halococcus saccharolyticus DSM 5350]
Length = 58
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR++G RALQIA APV+V + T+P+ IA +E A +P + R
Sbjct: 7 RYEKARIIGARALQIAYGAPVLVGTD-STEPILIAAEEYDAGVLPFTVNR 55
>gi|429192486|ref|YP_007178164.1| DNA-directed RNA polymerase subunit K/omega [Natronobacterium
gregoryi SP2]
gi|448325898|ref|ZP_21515276.1| RNA polymerase Rpb6 [Natronobacterium gregoryi SP2]
gi|429136704|gb|AFZ73715.1| DNA-directed RNA polymerase, subunit K/omega [Natronobacterium
gregoryi SP2]
gi|445613990|gb|ELY67675.1| RNA polymerase Rpb6 [Natronobacterium gregoryi SP2]
Length = 61
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQI+ APV++E + +P+ IA +E A +P ++R
Sbjct: 8 RYEKARILGARALQISYGAPVLIETD-RAEPILIAAEEYDAGVLPFTVKR 56
>gi|383621945|ref|ZP_09948351.1| RNA polymerase Rpb6 [Halobiforma lacisalsi AJ5]
gi|448702870|ref|ZP_21700227.1| RNA polymerase Rpb6 [Halobiforma lacisalsi AJ5]
gi|445776963|gb|EMA27939.1| RNA polymerase Rpb6 [Halobiforma lacisalsi AJ5]
Length = 61
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV++E + +P+ IA +E A +P ++R
Sbjct: 8 RYEKARILGARALQVSYGAPVLIETD-RAEPILIAAEEYDAGVLPFTVKR 56
>gi|298205351|ref|YP_003717803.1| DNA-directed RNA polymerase subunit K [Staphylothermus marinus F1]
Length = 106
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGET--DPLQIAMKELKARKIPIIIRRYLPDNSYE 140
R+E ARV+G RALQ+++ AP ++ + DP+ IA+ EL +P+ I+R +P+ YE
Sbjct: 18 RFEIARVIGARALQLSLGAPPLINPDEAPVKDPVAIAILELLKGLLPMTIKRMMPNGEYE 77
>gi|448322470|ref|ZP_21511940.1| DNA-directed RNA polymerase subunit K [Natronococcus amylolyticus
DSM 10524]
gi|445601228|gb|ELY55217.1| DNA-directed RNA polymerase subunit K [Natronococcus amylolyticus
DSM 10524]
Length = 60
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQI+ APV++E + ++P+ IA +E A +P + R
Sbjct: 8 RYEKARILGARALQISYGAPVLIETD-RSEPILIAAEEYDADVLPFTVNR 56
>gi|242398338|ref|YP_002993762.1| DNA-directed RNA polymerase subunit K [Thermococcus sibiricus MM
739]
gi|242264731|gb|ACS89413.1| DNA-directed RNA polymerase subunit K [Thermococcus sibiricus MM
739]
Length = 77
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
R+E+AR++G RALQIAM APV++ + PL A+ E + IPI + R
Sbjct: 26 RFEKARIIGARALQIAMGAPVLINVPEGASPLDAAIVEFEKGIIPITVIR 75
>gi|340505845|gb|EGR32130.1| zinc ran-binding domain protein 3 [Ichthyophthirius multifiliis]
Length = 464
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEG-ETDPLQIAMKELKARK 125
+YE+ARV+GTRALQIA +P+ V+ E E DP+ IA KE +K
Sbjct: 133 KYEKARVIGTRALQIAQSSPIYVDTEDKEYDPIVIAEKEFALKK 176
>gi|313126012|ref|YP_004036282.1| DNA-directed RNA polymerase subunit k [Halogeometricum borinquense
DSM 11551]
gi|448285852|ref|ZP_21477091.1| DNA-directed RNA polymerase, subunit k [Halogeometricum borinquense
DSM 11551]
gi|312292377|gb|ADQ66837.1| DNA-directed RNA polymerase, subunit K [Halogeometricum borinquense
DSM 11551]
gi|445575882|gb|ELY30345.1| DNA-directed RNA polymerase, subunit k [Halogeometricum borinquense
DSM 11551]
Length = 58
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV+++ + +++P+ IA +E A +P ++R
Sbjct: 7 RYEKARILGARALQVSYGAPVLLDTD-QSEPILIAAEEYDAGVLPFTVQR 55
>gi|332797018|ref|YP_004458518.1| RNA polymerase Rpb6 [Acidianus hospitalis W1]
gi|332694753|gb|AEE94220.1| RNA polymerase Rpb6 [Acidianus hospitalis W1]
Length = 95
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 75 NKLNIKQIR--------YERARVLGTRALQIAMCAPVMVELEG----ETDPLQIAMKELK 122
NKLN+ I YE AR++ RALQ+AM A ++++ G + + + IA +ELK
Sbjct: 8 NKLNVAYIESWKKRLTIYEIARIVSARALQLAMGAVPLIDISGFKPEQLNSISIAEEELK 67
Query: 123 ARKIPIIIRRYLPDNSYEDWGIDEL 147
+PI IRR P+ E + E+
Sbjct: 68 RGVLPITIRRRFPNGKVELISVKEI 92
>gi|310831481|ref|YP_003970124.1| putative DNA-dependent RNA polymerase subunit Rpb6 [Cafeteria
roenbergensis virus BV-PW1]
gi|309386665|gb|ADO67525.1| putative DNA-dependent RNA polymerase subunit Rpb6 [Cafeteria
roenbergensis virus BV-PW1]
Length = 153
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD-NSYED 141
+YE R++GTR Q+++ A M+++EG+ +I +E+K +P+ I+R LPD N E
Sbjct: 81 KYELVRIIGTRRKQLSLGAKPMIKIEGKLSINEIVDEEIKLNMVPLKIKRPLPDSNKVEI 140
Query: 142 WGIDELK 148
W EL+
Sbjct: 141 WEFSELE 147
>gi|410670086|ref|YP_006922457.1| DNA-directed RNA polymerase, subunit K [Methanolobus psychrophilus
R15]
gi|409169214|gb|AFV23089.1| DNA-directed RNA polymerase, subunit K [Methanolobus psychrophilus
R15]
Length = 58
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR++G R+LQI+M APV+++ + T+ L +A +E + PI ++R
Sbjct: 8 RYEKARIIGARSLQISMGAPVLID-DPSTNSLYLAKREFELGATPITVKR 56
>gi|433638718|ref|YP_007284478.1| DNA-directed RNA polymerase, subunit K/omega [Halovivax ruber
XH-70]
gi|448378231|ref|ZP_21560705.1| DNA-directed RNA polymerase subunit K [Halovivax asiaticus JCM
14624]
gi|433290522|gb|AGB16345.1| DNA-directed RNA polymerase, subunit K/omega [Halovivax ruber
XH-70]
gi|445654213|gb|ELZ07067.1| DNA-directed RNA polymerase subunit K [Halovivax asiaticus JCM
14624]
Length = 61
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV++E + T+P+ IA +E +P + R
Sbjct: 8 RYEKARILGARALQVSYGAPVLIETD-RTEPILIAAEEYDEGVLPFTVNR 56
>gi|126460377|ref|YP_001056655.1| DNA-directed RNA polymerase subunit K [Pyrobaculum calidifontis JCM
11548]
gi|126250098|gb|ABO09189.1| DNA-directed RNA polymerase, subunit K [Pyrobaculum calidifontis
JCM 11548]
Length = 110
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDN 137
+YE AR++G RA Q+AM A +V++ G DP+ IAM+EL+ + II R LPD
Sbjct: 37 KYEIARIIGARATQLAMGAQPLVDVRQLGTIDPVLIAMEELRQGLLDFIIVRELPDG 93
>gi|410721679|ref|ZP_11361009.1| DNA-directed RNA polymerase, subunit K/omega [Methanobacterium sp.
Maddingley MBC34]
gi|410598425|gb|EKQ52998.1| DNA-directed RNA polymerase, subunit K/omega [Methanobacterium sp.
Maddingley MBC34]
Length = 58
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 4/58 (6%)
Query: 74 NNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIR 131
+ KLN R+ERAR++G RALQ++M A MV++ + D + IA+ EL + +P+ +R
Sbjct: 3 SKKLN----RFERARLIGARALQLSMGAKPMVDVTPDMDTIDIAVIELDKKVLPLDVR 56
>gi|146304436|ref|YP_001191752.1| DNA-directed RNA polymerase K [Metallosphaera sedula DSM 5348]
gi|145702686|gb|ABP95828.1| DNA-directed RNA polymerase, subunit K [Metallosphaera sedula DSM
5348]
Length = 110
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 8/74 (10%)
Query: 84 YERARVLGTRALQIAMCAPVMVE-----LEGETDPLQIAMKELKARKIPIIIRRYLPDNS 138
YERAR++ RALQ+AM A +++ LEG + ++IA +E ++ +PI +RR P+
Sbjct: 27 YERARIISARALQLAMGASPLIDVSSTGLEGASS-IRIAEEEFRSNLLPISVRRRFPNGK 85
Query: 139 YEDWGIDELKIIDR 152
E + +KII +
Sbjct: 86 VELISV--MKIISK 97
>gi|327311662|ref|YP_004338559.1| DNA-directed RNA polymerase subunit K [Thermoproteus uzoniensis
768-20]
gi|326948141|gb|AEA13247.1| DNA-directed RNA polymerase subunit K [Thermoproteus uzoniensis
768-20]
Length = 112
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDN 137
R+E ARV+ RALQ+AM A +V++ G DP+ IAM+E + K+ I R LPD
Sbjct: 37 RFEVARVVAARALQLAMGAQPLVDINSLGTKDPVLIAMEEFRQGKLNFSIVRQLPDG 93
>gi|307595318|ref|YP_003901635.1| RNA polymerase Rpb6 [Vulcanisaeta distributa DSM 14429]
gi|307550519|gb|ADN50584.1| RNA polymerase Rpb6 [Vulcanisaeta distributa DSM 14429]
Length = 117
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDNSY 139
+YE AR++ RA Q+AM A ++ + G DP+ IAM+E++ +P II R LP+ +
Sbjct: 40 KYELARIVAARAKQLAMGAQPLINPQELGTFDPIDIAMEEVRRGLLPFIIVRTLPNGKH 98
>gi|325958570|ref|YP_004290036.1| DNA-directed RNA polymerase subunit K [Methanobacterium sp. AL-21]
gi|325330002|gb|ADZ09064.1| DNA-directed RNA polymerase subunit K [Methanobacterium sp. AL-21]
Length = 63
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGET--DPLQIAMKELKARKIPIIIRR 132
K R+E+AR++G RALQ++M A V++ DP+ IA+ EL K+P+ +RR
Sbjct: 5 KFTRFEKARIIGARALQLSMGAEPKVDVNDAKSFDPIDIALLELAKNKMPLDVRR 59
>gi|269862226|ref|XP_002650754.1| DNA-directed RNA polymerase, subunit K/omega [Enterocytozoon
bieneusi H348]
gi|220065668|gb|EED43303.1| DNA-directed RNA polymerase, subunit K/omega [Enterocytozoon
bieneusi H348]
Length = 57
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 34/47 (72%)
Query: 84 YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIII 130
YE+A+++G RA Q++ AP +V++ TD ++IA KEL +K+P I+
Sbjct: 4 YEKAKIIGVRATQLSDDAPPLVDIGNLTDCIEIAKKELAEKKLPFIV 50
>gi|159041045|ref|YP_001540297.1| RNA polymerase Rpb6 [Caldivirga maquilingensis IC-167]
gi|157919880|gb|ABW01307.1| RNA polymerase Rpb6 [Caldivirga maquilingensis IC-167]
Length = 104
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDNSYE 140
+YE A+++ R Q+ AP +V + G +DP+ IA +ELK +P II R LP+
Sbjct: 28 KYEFAKIIAVRTRQLMDGAPPLVNPKEIGTSDPVAIAFEELKRGLLPFIIIRRLPNGKRV 87
Query: 141 DWGIDELKIIDR 152
++ + EL+ ++R
Sbjct: 88 EYTLKELQELER 99
>gi|261333898|emb|CBH16892.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei
gambiense DAL972]
Length = 119
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 20/96 (20%)
Query: 74 NNKLNIKQIRYERARVLGTRALQIAMCAPVMVE--------------------LEGETDP 113
+ K ++ +YE AR++G RA QI V++E DP
Sbjct: 15 DRKSSVYLTKYEVARIIGERARQIVNGTSVLLESQNGCGTGNSLELAEGCADPFAASVDP 74
Query: 114 LQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKI 149
+ I EL +IP+I+RR PD E+ ++ELK+
Sbjct: 75 IHITKLELLQGRIPMIVRRTWPDGRTENIPVNELKV 110
>gi|84619254|emb|CAJ43707.1| RNA polymerase I subunit 1RPB6 [Trypanosoma brucei brucei]
Length = 131
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 20/96 (20%)
Query: 74 NNKLNIKQIRYERARVLGTRALQIAMCAPVMVE--------------------LEGETDP 113
+ K ++ +YE AR++G RA QI V++E DP
Sbjct: 27 DRKSSVYLTKYEVARIIGERARQIVNGTSVLLESQNGCGTGNSLELAEGCADPFAASVDP 86
Query: 114 LQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKI 149
+ I EL +IP+I+RR PD E+ ++ELK+
Sbjct: 87 IHITKLELLQGRIPMIVRRTWPDGRTENIPVNELKV 122
>gi|119872016|ref|YP_930023.1| DNA-directed RNA polymerase subunit K [Pyrobaculum islandicum DSM
4184]
gi|119673424|gb|ABL87680.1| DNA-directed RNA polymerase, subunit K [Pyrobaculum islandicum DSM
4184]
Length = 109
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDN 137
+YE AR++G RALQ+AM A +++ G TDP+ IA++E + + II R PD
Sbjct: 36 KYEIARIIGARALQLAMGAQPKIDIRELGTTDPVLIALEEFRRGLLDFIIVREFPDG 92
>gi|333910743|ref|YP_004484476.1| DNA-directed RNA polymerase subunit K [Methanotorris igneus Kol 5]
gi|333751332|gb|AEF96411.1| DNA-directed RNA polymerase subunit K [Methanotorris igneus Kol 5]
Length = 60
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 79 IKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
+K ++E AR+LG RA+QI+ AP+ +E + ++ L+IAM+E+K +P+ ++R
Sbjct: 1 MKLTKFEVARMLGARAMQISEGAPITIETD-KSSTLEIAMEEIKKGTVPLRVKR 53
>gi|170290923|ref|YP_001737739.1| DNA-directed RNA polymerase subunit K [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175003|gb|ACB08056.1| DNA-directed RNA polymerase, subunit K [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 84
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 5/65 (7%)
Query: 73 NNNKLNIKQI-RYERARVLGTRALQIAMCAPVMVE----LEGETDPLQIAMKELKARKIP 127
N++ L K++ ++E+ R++ RA QIA +P+ +E EG TDP+++A EL+ K+P
Sbjct: 2 NSDLLGPKRLTKFEKVRIISVRAQQIATGSPLFLEENEIPEGLTDPIELAKLELEKGKLP 61
Query: 128 IIIRR 132
I+I R
Sbjct: 62 ILIGR 66
>gi|150401516|ref|YP_001325282.1| RNA polymerase Rpb6 [Methanococcus aeolicus Nankai-3]
gi|150014219|gb|ABR56670.1| RNA polymerase Rpb6 [Methanococcus aeolicus Nankai-3]
Length = 61
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 79 IKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 137
+K ++E+AR+LG+RALQI+ A VE E ++ + IAM E K K+P+ +++ L +
Sbjct: 1 MKYTKFEKARLLGSRALQISDGAFATVESEEKSSGV-IAMNEFKQGKLPLKVKKPLKEQ 58
>gi|255513354|gb|EET89620.1| RNA polymerase Rpb6 [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 57
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGE-TDPLQIAMKELKARKIPIIIRR 132
++E+ARV+G RALQ+A AP ++++ E +DPL +A E + IPI I R
Sbjct: 6 KFEKARVIGARALQLAHGAPPLIKVPKEISDPLDLAEIEFEKDIIPITIIR 56
>gi|325969553|ref|YP_004245745.1| DNA-directed RNA polymerase subunit K [Vulcanisaeta moutnovskia
768-28]
gi|323708756|gb|ADY02243.1| DNA-directed RNA polymerase subunit K [Vulcanisaeta moutnovskia
768-28]
Length = 117
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDNSY 139
+YE AR++ RA Q+AM A ++ + G DP+ IA++E++ IP I+ R LP+ +
Sbjct: 40 KYELARIVAARAKQLAMGAQPLINPQEIGTYDPVDIALEEIRRGLIPFIVVRTLPNGRH 98
>gi|320101226|ref|YP_004176818.1| DNA-directed RNA polymerase subunit omega [Desulfurococcus mucosus
DSM 2162]
gi|319753578|gb|ADV65336.1| DNA-directed RNA polymerase, omega subunit [Desulfurococcus mucosus
DSM 2162]
Length = 106
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRR 132
+ R+E ARV+G RALQ++M AP ++++ DP+ IA+KE+ +P+ IRR
Sbjct: 16 RMTRFEVARVVGARALQLSMGAPPVIDVSSLPVKDPVYIAIKEVLTGLLPMSIRR 70
>gi|71754395|ref|XP_828112.1| DNA-directed RNA polymerase subunit [Trypanosoma brucei TREU927]
gi|70833498|gb|EAN79000.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 131
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 20/96 (20%)
Query: 74 NNKLNIKQIRYERARVLGTRALQIAMCAPVMVE--------------------LEGETDP 113
+ K ++ +YE AR++G RA QI V+++ DP
Sbjct: 27 DRKSSVYLTKYEVARIIGERARQIVNGTSVLLDSQNGCGTGNSLELAEGCADPFAASVDP 86
Query: 114 LQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKI 149
+ I EL +IP+I+RR PD E+ ++ELK+
Sbjct: 87 IHITKLELLQGRIPMIVRRTWPDGRTENIPVNELKV 122
>gi|424819346|ref|ZP_18244455.1| RNA polymerase Rpb6 [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
gi|326422438|gb|EGD71837.1| RNA polymerase Rpb6 [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
Length = 60
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDP-LQIAMKELKARKIPIIIRR 132
++ERAR++G RALQ++M AP ++++ + D + IA +EL+ +PI +++
Sbjct: 6 KFERARLVGARALQLSMGAPALIKVNKKEDTYIDIAKRELEKDILPITVKK 56
>gi|389860368|ref|YP_006362607.1| DNA-directed RNA polymerase subunit K [Thermogladius cellulolyticus
1633]
gi|388525271|gb|AFK50469.1| DNA-directed RNA polymerase, subunit K [Thermogladius
cellulolyticus 1633]
Length = 104
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGET--DPLQIAMKELKARKIPIIIRRYLPDN 137
K R+E ARV+G RALQ+A AP + ++ DP+ IA+ EL +P+ I+R D
Sbjct: 13 KLTRFEVARVVGARALQLAYGAPPLFDISSFPIKDPVAIAIAELIRGLLPMSIKRRGIDG 72
Query: 138 SYEDWGIDEL 147
S E +++L
Sbjct: 73 STELVPVNKL 82
>gi|145591904|ref|YP_001153906.1| DNA-directed RNA polymerase subunit K [Pyrobaculum arsenaticum DSM
13514]
gi|145283672|gb|ABP51254.1| DNA-directed RNA polymerase, subunit K [Pyrobaculum arsenaticum DSM
13514]
Length = 109
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDN 137
+YE ARV+G RA+Q+AM A +V+ + G DP+ IAM+E + + I+ R PD
Sbjct: 36 KYEIARVVGARAIQLAMGAQPLVDPQEVGSMDPVIIAMEEFRRGLLDFIVVREYPDG 92
>gi|218884345|ref|YP_002428727.1| DNA-directed RNA polymerase subunit K [Desulfurococcus
kamchatkensis 1221n]
gi|218765961|gb|ACL11360.1| DNA-directed RNA polymerase subunit K [Desulfurococcus
kamchatkensis 1221n]
Length = 106
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRR 132
R+E ARV+G RALQ++M AP ++++ DP+ IA+ EL +P+ IRR
Sbjct: 19 RFEIARVVGARALQLSMGAPPIIDVSNLPVKDPVYIAVNELITGLLPMSIRR 70
>gi|390938858|ref|YP_006402596.1| DNA-directed RNA polymerase subunit K [Desulfurococcus fermentans
DSM 16532]
gi|390191965|gb|AFL67021.1| DNA-directed RNA polymerase, subunit K [Desulfurococcus fermentans
DSM 16532]
Length = 106
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRR 132
R+E ARV+G RALQ++M AP ++++ DP+ IA+ EL +P+ IRR
Sbjct: 19 RFEIARVVGARALQLSMGAPPIIDVSNLPVKDPVYIAVNELITGLLPMSIRR 70
>gi|347524483|ref|YP_004782053.1| RNA polymerase Rpb6 [Pyrolobus fumarii 1A]
gi|343461365|gb|AEM39801.1| RNA polymerase Rpb6 [Pyrolobus fumarii 1A]
Length = 113
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEG-----ETDPLQIAMKELKARKIPIIIRRYLPDN 137
R+ERAR++G RALQ+++ AP +++ DP+ +A EL +PI + RY
Sbjct: 19 RFERARIIGARALQLSLGAPPLIDTSRLHPRIREDPVLVARVELAEGVLPITVLRYTRRG 78
Query: 138 SYE 140
Y+
Sbjct: 79 EYQ 81
>gi|452210337|ref|YP_007490451.1| DNA-directed RNA polymerase subunit K [Methanosarcina mazei Tuc01]
gi|452100239|gb|AGF97179.1| DNA-directed RNA polymerase subunit K [Methanosarcina mazei Tuc01]
Length = 37
Score = 42.0 bits (97), Expect = 0.079, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 99 MCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
M APV+VE +G DPL +A++ELKA IPI ++R
Sbjct: 1 MGAPVLVEDDGRLDPLGVAIEELKAGVIPITVKR 34
>gi|312137114|ref|YP_004004451.1| DNA-directed RNA polymerase, subunit k [Methanothermus fervidus DSM
2088]
gi|311224833|gb|ADP77689.1| DNA-directed RNA polymerase, subunit K [Methanothermus fervidus DSM
2088]
Length = 58
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+E+ R+LG+RALQ+AM A +V+ + + +P+ IA+ ELK IP+ + R
Sbjct: 4 KLTRFEKDRLLGSRALQLAMGAKPLVKTD-KINPVDIAILELKKDVIPLKVVR 55
>gi|150399389|ref|YP_001323156.1| RNA polymerase Rpb6 [Methanococcus vannielii SB]
gi|150012092|gb|ABR54544.1| RNA polymerase Rpb6 [Methanococcus vannielii SB]
Length = 56
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 79 IKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL 134
+K ++E AR++G R+LQI+ AP+ VE + ++ L +A +E+K KIP+ +++ L
Sbjct: 1 MKLTKFETARLVGARSLQISDGAPLTVESD-KSSSLNLAEEEVKQGKIPLCVKKPL 55
>gi|70607127|ref|YP_255997.1| DNA-directed RNA polymerase subunit K [Sulfolobus acidocaldarius
DSM 639]
gi|449067367|ref|YP_007434449.1| DNA-directed RNA polymerase subunit K [Sulfolobus acidocaldarius
N8]
gi|449069637|ref|YP_007436718.1| DNA-directed RNA polymerase subunit K [Sulfolobus acidocaldarius
Ron12/I]
gi|73920768|sp|P39463.2|RPOK_SULAC RecName: Full=DNA-directed RNA polymerase subunit K
gi|68567775|gb|AAY80704.1| DNA-directed RNA polymerase subunit K [Sulfolobus acidocaldarius
DSM 639]
gi|449035875|gb|AGE71301.1| DNA-directed RNA polymerase subunit K [Sulfolobus acidocaldarius
N8]
gi|449038145|gb|AGE73570.1| DNA-directed RNA polymerase subunit K [Sulfolobus acidocaldarius
Ron12/I]
Length = 89
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 63 MKVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKE 120
M + N+I N N K +YE AR++ RALQ++M A +++ D + IA +E
Sbjct: 1 MTIDKINEIFKENWKN-KLTKYEIARIISARALQLSMGALPLIDTSNLKSDDVISIAEEE 59
Query: 121 LKARKIPIIIRRYLPDNSYE 140
LK +PI IRR P+ E
Sbjct: 60 LKRGVLPITIRRIYPNGQVE 79
>gi|150402497|ref|YP_001329791.1| RNA polymerase Rpb6 [Methanococcus maripaludis C7]
gi|150033527|gb|ABR65640.1| RNA polymerase Rpb6 [Methanococcus maripaludis C7]
Length = 58
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 79 IKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 137
+K ++E AR++G R+LQI+ AP+ +E + T L +A E+K K+P+ +++ + N
Sbjct: 1 MKLTKFETARLVGARSLQISDGAPLTIESD-RTSSLNLAEDEIKQGKLPLCVKKQVKKN 58
>gi|15921480|ref|NP_377149.1| DNA-directed RNA polymerase subunit K [Sulfolobus tokodaii str. 7]
gi|20178080|sp|Q972B1.1|RPOK_SULTO RecName: Full=DNA-directed RNA polymerase subunit K
gi|15622266|dbj|BAB66258.1| DNA-directed RNA polymerase subunit K [Sulfolobus tokodaii str. 7]
Length = 86
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRRYLPDNSYE 140
+YE AR++ RALQ+AM A +++ D + IA +ELK +PI +RR P+ E
Sbjct: 17 KYEIARIISARALQLAMGASPLIDTNNLPFNDVISIAEEELKRGVLPITVRRVYPNGKIE 76
>gi|45358890|ref|NP_988447.1| RNA polymerase Rpb6 [Methanococcus maripaludis S2]
gi|340624638|ref|YP_004743091.1| DNA-directed RNA polymerase subunit K [Methanococcus maripaludis
X1]
gi|45047756|emb|CAF30883.1| DNA-directed RNA polymerase, subunit K [Methanococcus maripaludis
S2]
gi|339904906|gb|AEK20348.1| DNA-directed RNA polymerase subunit K [Methanococcus maripaludis
X1]
Length = 57
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 79 IKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
+K ++E AR++G R+LQI+ AP+ +E E +T L +A E+K K+P+ +++
Sbjct: 1 MKLTKFETARLIGARSLQISDGAPLAIESE-KTSSLDLADDEVKQGKLPLCVKK 53
>gi|379003393|ref|YP_005259065.1| DNA-directed RNA polymerase subunit K/omega [Pyrobaculum oguniense
TE7]
gi|375158846|gb|AFA38458.1| DNA-directed RNA polymerase, subunit K/omega [Pyrobaculum oguniense
TE7]
Length = 109
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDN 137
+YE ARV+G RA+Q+AM A +V+ + G DP+ IA++E + + II R PD
Sbjct: 36 KYEIARVVGARAIQLAMGAQPLVDPQEVGSMDPVIIAIEEFRRGLLDFIIVREYPDG 92
>gi|374635690|ref|ZP_09707284.1| RNA polymerase Rpb6 [Methanotorris formicicus Mc-S-70]
gi|373561543|gb|EHP87776.1| RNA polymerase Rpb6 [Methanotorris formicicus Mc-S-70]
Length = 60
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
++E ARVLG RA+QI+ A + +E + ++ L IAM+E+K +P+ ++R P +E+
Sbjct: 5 KFEVARVLGARAMQISEGALITIETD-KSSTLDIAMEEIKKGMVPLRVKR--PKIGFEE 60
>gi|429217392|ref|YP_007175382.1| DNA-directed RNA polymerase subunit K/omega [Caldisphaera
lagunensis DSM 15908]
gi|429133921|gb|AFZ70933.1| DNA-directed RNA polymerase, subunit K/omega [Caldisphaera
lagunensis DSM 15908]
Length = 95
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRY 133
+YE+A+++G R+LQ+ AP +++L+ +DP+ IA E++ +P+ I RY
Sbjct: 24 KYEKAKIIGIRSLQLTKNAPPLIKLDVVKSSDPVSIAKYEVENGILPVSIIRY 76
>gi|134045311|ref|YP_001096797.1| RNA polymerase Rpb6 [Methanococcus maripaludis C5]
gi|132662936|gb|ABO34582.1| RNA polymerase Rpb6 [Methanococcus maripaludis C5]
Length = 58
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 79 IKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
+K ++E AR++G R+LQI+ AP+ +E + +T L +A E+K K+P+ +++
Sbjct: 1 MKLTKFETARLVGARSLQISDGAPLTIESD-KTSSLNLAEDEVKQGKLPLCVKK 53
>gi|222636992|gb|EEE67124.1| hypothetical protein OsJ_24151 [Oryza sativa Japonica Group]
Length = 218
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 94 ALQIAMCAPVMVELEGETDPLQIAMK 119
ALQI+M A VMVEL+GETDPL+I +K
Sbjct: 188 ALQISMNALVMVELDGETDPLEIKIK 213
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 94 ALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNS 138
ALQI+M A VMVEL+GETDPL+ + + + Y D S
Sbjct: 123 ALQISMNALVMVELDGETDPLECLYSRNSNNEDAVYDKEYEKDGS 167
>gi|424819698|ref|ZP_18244765.1| RNA polymerase Rpb6 [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
gi|326422494|gb|EGD71891.1| RNA polymerase Rpb6 [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
Length = 59
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDP-LQIAMKELKARKIPIIIRR 132
++E+AR++G RALQ++ AP ++++ + D + IA +EL+ +PI ++R
Sbjct: 6 KFEKARLVGARALQLSSGAPPLIKINKKEDTYIDIAKRELEKGILPITVKR 56
>gi|291333602|gb|ADD93294.1| DNA directed RNA polymerase subunit K [uncultured archaeon
MedDCM-OCT-S09-C50]
Length = 84
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 22/73 (30%)
Query: 80 KQIRYERARVLGTRALQIAMCAPV--------------MVELEG--------ETDPLQIA 117
+ R+ERAR++G RALQI M AP+ +V L G DPL+IA
Sbjct: 7 QHTRFERARIIGARALQIGMGAPLYATEEVLRDQFKEELVSLYGLEEANIRFVLDPLKIA 66
Query: 118 MKELKARKIPIII 130
+ E + IPI I
Sbjct: 67 LYEYENHLIPIDI 79
>gi|374724099|gb|EHR76179.1| DNA-directed RNA polymerase subunit K [uncultured marine group II
euryarchaeote]
Length = 84
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 22/76 (28%)
Query: 81 QIRYERARVLGTRALQIAMCAPV--------------MVELEG--------ETDPLQIAM 118
R+ERAR++G RALQI M AP+ +V L G DPL+IA+
Sbjct: 8 HTRFERARIIGARALQIGMGAPLYANEEVLREAFREELVSLYGLEEASVRFVLDPLKIAL 67
Query: 119 KELKARKIPIIIRRYL 134
E + IPI I +L
Sbjct: 68 YEYEHELIPIDIDPHL 83
>gi|336121974|ref|YP_004576749.1| RNA polymerase Rpb6 [Methanothermococcus okinawensis IH1]
gi|334856495|gb|AEH06971.1| RNA polymerase Rpb6 [Methanothermococcus okinawensis IH1]
Length = 56
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 79 IKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIR 131
+K ++E+AR++G R+LQI+ A + ++ E + L IAM+E + KIP+ ++
Sbjct: 1 MKCTKFEKARIIGARSLQISDGAFLTIDTE-KYSSLDIAMEEFEKGKIPLKVK 52
>gi|352682887|ref|YP_004893411.1| DNA-directed RNA polymerase subunit K [Thermoproteus tenax Kra 1]
gi|350275686|emb|CCC82333.1| DNA-directed RNA polymerase subunit K [Thermoproteus tenax Kra 1]
Length = 112
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGET--DPLQIAMKELKARKIPIIIRRYLPD 136
R+E ARV+ RA+Q++M A ++++ DP+ IA++E K K+ I R LPD
Sbjct: 37 RFEVARVIAARAIQLSMGAEPLIDISTLQIKDPVIIAIEEFKQGKLNFSIVRELPD 92
>gi|342185146|emb|CCC94629.1| putative DNA-directed RNA polymerase subunit [Trypanosoma
congolense IL3000]
Length = 130
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 20/85 (23%)
Query: 83 RYERARVLGTRALQIAMCAPVMVE-------------LEGET-------DPLQIAMKELK 122
+YE AR+LG RA QI ++++ EG T DP+ I+ EL
Sbjct: 37 KYEVARILGERARQIVNGTSLVLDSNSHRGEMSSLEIAEGCTNPYAAAVDPIYISKVELL 96
Query: 123 ARKIPIIIRRYLPDNSYEDWGIDEL 147
+KIP+I+RR PD E+ + EL
Sbjct: 97 QKKIPMIVRRIWPDGWCENIPVSEL 121
>gi|48477615|ref|YP_023321.1| DNA-directed RNA polymerase subunit K [Picrophilus torridus DSM
9790]
gi|73917884|sp|Q6L1M4.1|RPOK_PICTO RecName: Full=DNA-directed RNA polymerase subunit K
gi|48430263|gb|AAT43128.1| DNA-directed RNA polymerase subunit K [Picrophilus torridus DSM
9790]
Length = 60
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 83 RYERARVLGTRALQIAMCAPV-MVELEGETDPLQIAMKELKARKIPIIIRR 132
++E+AR++G RALQIAM APV + DP+ IAM E + IPI I+R
Sbjct: 8 KFEKARIIGARALQIAMGAPVIIDISPDIIDPIDIAMIEFENNVIPITIKR 58
>gi|159905729|ref|YP_001549391.1| RNA polymerase Rpb6 [Methanococcus maripaludis C6]
gi|159887222|gb|ABX02159.1| RNA polymerase Rpb6 [Methanococcus maripaludis C6]
Length = 59
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 79 IKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL 134
+K ++E AR++G R+LQI+ AP+ +E + T L +A E++ K+P+ +++ +
Sbjct: 1 MKLTKFETARLVGARSLQISDGAPLAIESD-RTSSLNLAEDEVRQGKLPLCVKKQV 55
>gi|288560170|ref|YP_003423656.1| DNA-directed RNA polymerase subunit K RpoK [Methanobrevibacter
ruminantium M1]
gi|288542880|gb|ADC46764.1| DNA-directed RNA polymerase subunit K RpoK [Methanobrevibacter
ruminantium M1]
Length = 72
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGET--------DPLQIAMKELKARKIPIIIR 131
K R+E+ARVLG RA+Q++M A M E E DP+ IA EL+ +P+ +R
Sbjct: 10 KLTRFEKARVLGARAIQLSMGAKPMEHKEIEKFIKNSKSLDPIDIATLELELGILPLDVR 69
>gi|296109375|ref|YP_003616324.1| RNA polymerase Rpb6 [methanocaldococcus infernus ME]
gi|295434189|gb|ADG13360.1| RNA polymerase Rpb6 [Methanocaldococcus infernus ME]
Length = 55
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 79 IKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPI 128
+K ++E AR++G R+LQIA A +++E E L+IA +E K KIP+
Sbjct: 1 MKLTKFEVARIIGARSLQIADGAYSTIDIE-ELSSLKIAFEEFKRGKIPL 49
>gi|289191575|ref|YP_003457516.1| RNA polymerase Rpb6 [Methanocaldococcus sp. FS406-22]
gi|288938025|gb|ADC68780.1| RNA polymerase Rpb6 [Methanocaldococcus sp. FS406-22]
Length = 57
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 79 IKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPI 128
+K ++E AR+LG R+LQI+ A + +E E ++ L+IA +E+K K+P+
Sbjct: 1 MKLTKFEIARILGARSLQISNGAYITIETECDSS-LKIAYEEIKQGKVPL 49
>gi|401423159|ref|XP_003876066.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492307|emb|CBZ27581.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 129
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 22/87 (25%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGET--------------------DPLQIAMKELK 122
++E ARV+G RA QIA A + L G T DP+ +A +L
Sbjct: 36 KFEVARVIGERAKQIASGAAM--SLPGTTSGLDSVETAERCTNPRSLAVDPVMMAKYDLL 93
Query: 123 ARKIPIIIRRYLPDNSYEDWGIDELKI 149
RKI +++RR PD + E ++EL +
Sbjct: 94 QRKIRMLVRRIWPDGAVETIPVNELMV 120
>gi|302348224|ref|YP_003815862.1| DNA-directed RNA polymerase subunit K [Acidilobus saccharovorans
345-15]
gi|302328636|gb|ADL18831.1| DNA-directed RNA polymerase subunit K [Acidilobus saccharovorans
345-15]
Length = 95
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEG---ETDPLQIAMKELKARKIPIIIRRYLPDNSY 139
+YERA+++G RALQ+ A +V+++ D ++IA EL +PI I RY P +
Sbjct: 24 KYERAKIIGLRALQLDSGALPLVDVDKINVRRDSVEIAAYELDHGLLPISIVRYTPSGAV 83
Query: 140 E 140
+
Sbjct: 84 Q 84
>gi|157870432|ref|XP_001683766.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68126833|emb|CAJ04437.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 129
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 18/85 (21%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGE------------------TDPLQIAMKELKAR 124
++E AR++G RA QIA A + + G DP+ +A +L R
Sbjct: 36 KFEVARIIGERAKQIASGAAMSLPGTGSGLDSVETAERCTNPRSLAVDPVMMAKYDLLQR 95
Query: 125 KIPIIIRRYLPDNSYEDWGIDELKI 149
KI +++RR PD + E ++EL +
Sbjct: 96 KIRMLVRRVWPDGAVETIPVNELMV 120
>gi|156936946|ref|YP_001434742.1| DNA-directed RNA polymerase subunit K [Ignicoccus hospitalis
KIN4/I]
gi|156565930|gb|ABU81335.1| DNA-directed RNA polymerase, subunit K [Ignicoccus hospitalis
KIN4/I]
Length = 97
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRR 132
++ERA ++G RALQ+++ AP ++++ + D L IA +EL+ +PI ++R
Sbjct: 16 KFERAVIVGVRALQLSIGAPPLIDISKLPKRDALIIAREELRRGLLPITVKR 67
>gi|218199556|gb|EEC81983.1| hypothetical protein OsI_25903 [Oryza sativa Indica Group]
Length = 147
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 84 YERARVLGT---RALQIAMCAPVMVELEGETDPLQIAMK 119
Y++ RV ALQI+M A VMVEL+GET PL+I +K
Sbjct: 104 YDKIRVCTHPWYTALQISMNALVMVELDGETYPLEIKIK 142
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 20/22 (90%)
Query: 94 ALQIAMCAPVMVELEGETDPLQ 115
ALQI+M A VMVEL+GETDPL+
Sbjct: 68 ALQISMNALVMVELDGETDPLE 89
>gi|325103076|ref|YP_004272730.1| hypothetical protein [Pedobacter saltans DSM 12145]
gi|324971924|gb|ADY50908.1| hypothetical protein Pedsa_0325 [Pedobacter saltans DSM 12145]
Length = 215
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 20 WAFTLLLDENAPTPSKANKWMGDLNLILGIKGERALVLILNHYMKVK 66
WA +L +N KAN W+ +L L K E+ LI NH + VK
Sbjct: 14 WAISLKAQDNTSEQKKANDWVAELKLDNAKKEEKVKALIFNHLVAVK 60
>gi|325972385|ref|YP_004248576.1| 2-dehydropantoate 2-reductase [Sphaerochaeta globus str. Buddy]
gi|324027623|gb|ADY14382.1| 2-dehydropantoate 2-reductase [Sphaerochaeta globus str. Buddy]
Length = 338
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 47 LGIKGERALVLILNHYMKVKSKNQIK----NNNKLNIKQIRYERARVLGTRALQIAMCAP 102
+ I G +L +L Y+ SK I+ + NK ++ ++ + AR++G + + A
Sbjct: 3 IAIYGAGSLGTVLGAYL---SKQGIECDLISRNKSHVTALQQKGARIVGKANFTVPVKAL 59
Query: 103 VMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNS 138
+ ++EG D + + K+L+ RK+ +R YL +
Sbjct: 60 LPDQMEGTYDVIFLLTKQLENRKVATFLRSYLAKDG 95
>gi|319936792|ref|ZP_08011204.1| hypothetical protein HMPREF9488_02038 [Coprobacillus sp. 29_1]
gi|319808060|gb|EFW04632.1| hypothetical protein HMPREF9488_02038 [Coprobacillus sp. 29_1]
Length = 293
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 43 LNLILGIKGERALVLILN----HYMKVKSKNQIKNNNKLNIKQIRYERA--RVLGTRALQ 96
LNLI ++A LI+ H +++ I N K + +I+ + + G +
Sbjct: 113 LNLIHHDSLQKATQLIIKAEYIHMFAIENNLCIAQNFKFKMLRIQKKVSLENTFGNQMYT 172
Query: 97 IAMCAP----VMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWG 143
I +P +++ GET+ L K+LK R IPII+ L DNS + +
Sbjct: 173 IFSSSPHDCAIIISYSGETNSLLRIAKQLKERHIPIIVITSLGDNSLKKYA 223
>gi|367037777|ref|XP_003649269.1| hypothetical protein THITE_2107753 [Thielavia terrestris NRRL 8126]
gi|346996530|gb|AEO62933.1| hypothetical protein THITE_2107753 [Thielavia terrestris NRRL 8126]
Length = 531
Score = 35.8 bits (81), Expect = 5.6, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 11/100 (11%)
Query: 50 KGERALVLILNHYMKVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEG 109
K E+ L+L L ++ K K ++ I + R GTR CA ++ L
Sbjct: 106 KSEKELILTLQETLRAKPKLRL---------SILTDALR--GTREAPNPSCASLLAPLIA 154
Query: 110 ETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKI 149
E P ++ ++ + + +RY+P E WG+ +K+
Sbjct: 155 EFGPDRVEIRMYHTPNLTGLRKRYIPSRINEGWGLQHMKL 194
>gi|15668369|ref|NP_247165.1| DNA-directed RNA polymerase subunit K [Methanocaldococcus
jannaschii DSM 2661]
gi|2500632|sp|Q57650.1|RPOK_METJA RecName: Full=DNA-directed RNA polymerase subunit K
gi|1498971|gb|AAB98177.1| DNA-directed RNA polymerase, subunit K (rpoK) [Methanocaldococcus
jannaschii DSM 2661]
Length = 57
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 79 IKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPI 128
+K ++E AR+LG R+LQI+ A +E + ++ L+IA +E+K K+P+
Sbjct: 1 MKLTKFEIARILGARSLQISSGAYATIETKCDSS-LKIAYEEIKQGKVPL 49
>gi|146088424|ref|XP_001466047.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|398016314|ref|XP_003861345.1| hypothetical protein, conserved [Leishmania donovani]
gi|134070149|emb|CAM68482.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|322499571|emb|CBZ34644.1| hypothetical protein, conserved [Leishmania donovani]
Length = 129
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 22/87 (25%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEG--------ET------------DPLQIAMKELK 122
++E AR++G RA QIA A + L G ET DP+ +A +L
Sbjct: 36 KFEVARIIGERAKQIASGAAM--SLPGTASGLDSVETAERCTNPRSLAVDPVMMAKYDLL 93
Query: 123 ARKIPIIIRRYLPDNSYEDWGIDELKI 149
RKI +++RR PD + E ++EL +
Sbjct: 94 QRKIRMLVRRVWPDGAVETIPVNELMV 120
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,361,550,167
Number of Sequences: 23463169
Number of extensions: 85095664
Number of successful extensions: 208296
Number of sequences better than 100.0: 605
Number of HSP's better than 100.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 207626
Number of HSP's gapped (non-prelim): 607
length of query: 152
length of database: 8,064,228,071
effective HSP length: 115
effective length of query: 37
effective length of database: 9,660,930,932
effective search space: 357454444484
effective search space used: 357454444484
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)