BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8360
(152 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q32PE0|RPAB2_BOVIN DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Bos
taurus GN=POLR2F PE=2 SV=1
Length = 127
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 119 GVDELIITD 127
>sp|Q5R592|RPAB2_PONAB DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Pongo
abelii GN=POLR2F PE=2 SV=1
Length = 127
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 119 GVDELIITD 127
>sp|P61218|RPAB2_HUMAN DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Homo
sapiens GN=POLR2F PE=1 SV=1
Length = 127
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 119 GVDELIITD 127
>sp|P61217|RPAB2_CRIGR DNA-directed RNA polymerases I, II, and III subunit RPABC2
OS=Cricetulus griseus GN=POLR2F PE=2 SV=1
Length = 127
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 119 GVDELIITD 127
>sp|O88828|RPAB2_RAT DNA-directed RNA polymerases I, II, and III subunit RPABC2
OS=Rattus norvegicus GN=Polr2f PE=1 SV=1
Length = 127
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 119 GVDELIISD 127
>sp|P61219|RPAB2_MOUSE DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus
musculus GN=Polr2f PE=2 SV=1
Length = 127
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/69 (91%), Positives = 65/69 (94%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLPD SYEDW
Sbjct: 59 KYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDW 118
Query: 143 GIDELKIID 151
G+DEL I D
Sbjct: 119 GVDELIISD 127
>sp|Q24320|RPAB2_DROME DNA-directed RNA polymerases I, II, and III subunit RPABC2
OS=Drosophila melanogaster GN=RpII18 PE=2 SV=1
Length = 131
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/69 (85%), Positives = 66/69 (95%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAMCAP+MVEL+GETDPLQIAMKELK +KIPIIIRRYLPD+SYEDW
Sbjct: 62 KYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDW 121
Query: 143 GIDELKIID 151
IDEL ++D
Sbjct: 122 SIDELIMVD 130
>sp|Q17684|RPAB2_CAEEL Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2
OS=Caenorhabditis elegans GN=rpb-6 PE=3 SV=1
Length = 137
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 62/69 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAM APVMVELEGETDPL+IA KELK R+IPII+RRYLPD SYEDW
Sbjct: 68 KYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIVRRYLPDGSYEDW 127
Query: 143 GIDELKIID 151
D+L++ D
Sbjct: 128 PTDQLQLAD 136
>sp|A8WSV7|RPAB2_CAEBR Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2
OS=Caenorhabditis briggsae GN=rpb-6 PE=3 SV=1
Length = 138
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/69 (78%), Positives = 62/69 (89%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERARVLGTRALQIAM APVMVELEGETDPL+IA KELK R++PIIIRRYLPD SYEDW
Sbjct: 69 KYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRVPIIIRRYLPDGSYEDW 128
Query: 143 GIDELKIID 151
++L++ D
Sbjct: 129 PTEQLQLAD 137
>sp|P36595|RPAB2_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpb6 PE=1 SV=1
Length = 142
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 69/101 (68%), Gaps = 4/101 (3%)
Query: 51 GERALVLILNHYMKVKS----KNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVE 106
GE + +I K+ K K + +YERAR+LGTRALQI+M APV+V+
Sbjct: 41 GEPSTTVITEDVASSKTAQSGKAVAKEDRTTTPYMTKYERARILGTRALQISMNAPVLVD 100
Query: 107 LEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDEL 147
LEGETDPLQIAMKEL +KIP+++RRYLPD SYEDW + EL
Sbjct: 101 LEGETDPLQIAMKELAQKKIPLLVRRYLPDGSYEDWSVAEL 141
>sp|P20435|RPAB2_YEAST DNA-directed RNA polymerases I, II, and III subunit RPABC2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RPO26 PE=1 SV=1
Length = 155
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 62/69 (89%), Gaps = 1/69 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLPD S+EDW
Sbjct: 87 KYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDW 146
Query: 143 GIDELKIID 151
++EL I+D
Sbjct: 147 SVEEL-IVD 154
>sp|Q54FA8|RPAB2_DICDI DNA-directed RNA polymerases I, II, and III subunit rpabc2
OS=Dictyostelium discoideum GN=polr2f PE=3 SV=1
Length = 133
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/67 (74%), Positives = 61/67 (91%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDW 142
+YERAR+LG+RALQI+M AP+MVELEGETDPLQIA KEL+A+KIP+IIRR+LP+ YEDW
Sbjct: 67 KYERARLLGSRALQISMNAPIMVELEGETDPLQIAWKELRAKKIPLIIRRFLPNGMYEDW 126
Query: 143 GIDELKI 149
+DEL I
Sbjct: 127 SVDELSI 133
>sp|Q8PW42|RPOK_METMA DNA-directed RNA polymerase subunit K OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=rpoK PE=3 SV=1
Length = 83
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 41/50 (82%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
R+ERAR++G RALQIAM APV+VE +G DPL +A++ELKA IPI ++R
Sbjct: 31 RFERARIVGARALQIAMGAPVLVEDDGRLDPLGVAIEELKAGVIPITVKR 80
>sp|Q8TT40|RPOK_METAC DNA-directed RNA polymerase subunit K OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rpoK
PE=3 SV=1
Length = 60
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 41/53 (77%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+ERAR++G RALQIAM APV+V+ +G DPL +A+ ELKA IPI ++R
Sbjct: 5 KYTRFERARIVGARALQIAMGAPVLVDDDGRLDPLGVAIAELKAEIIPITVKR 57
>sp|A1RWX0|RPOK_THEPD DNA-directed RNA polymerase subunit K OS=Thermofilum pendens
(strain Hrk 5) GN=rpoK PE=3 SV=1
Length = 81
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGE-TDPLQIAMKELKARKIPIIIRRYLPDNSYED 141
R+ERAR++G RALQI++ APV++++ E +DP+ IA KEL+ +PII+ R+ P+ ++
Sbjct: 10 RFERARIIGIRALQISLGAPVLIQVSEELSDPITIAEKELELGLLPIIVVRWTPEGKIQE 69
Query: 142 WGIDELKI 149
I LK+
Sbjct: 70 IPIKYLKL 77
>sp|O29134|RPOK_ARCFU DNA-directed RNA polymerase subunit K OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoK PE=3 SV=1
Length = 75
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Query: 76 KLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K + R+E+AR++G RALQIAM APV++E + +T+PL+IA++E IPI +RR
Sbjct: 6 KFPFEYTRFEKARIIGARALQIAMGAPVLIETD-KTEPLEIALEEFNRGVIPITVRR 61
>sp|Q5UQ32|RPO6_MIMIV DNA-directed RNA polymerase subunit 6 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R209 PE=3 SV=1
Length = 396
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 62 YMKVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCA-PVMVELEGETDPLQIAMKE 120
Y K++ K N + + YE R+LGTRA Q A P++ +EG P ++A E
Sbjct: 174 YSKIEYKKIPDNERETDPILTYYEIVRILGTRAQQFNYGAKPLIKGVEG-MHPAKMAFVE 232
Query: 121 LKARKIPIIIRRYLPDNSYEDWGIDELKII 150
L A+ I+RR+LP YEDW IDEL +I
Sbjct: 233 LTAKMTSFIVRRHLPGKKYEDWRIDELGMI 262
>sp|A2SSV2|RPOK_METLZ DNA-directed RNA polymerase subunit K OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpoK
PE=3 SV=1
Length = 62
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYERAR++G RALQI+M APV+V+ + DPL IA++E A ++PI ++R
Sbjct: 5 RYERARIVGARALQISMGAPVLVKTV-KIDPLDIALEEFDADRVPITVKR 53
>sp|Q9HQJ0|RPOK_HALSA DNA-directed RNA polymerase subunit K OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoK PE=3
SV=1
Length = 60
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR++G RALQ+A APV+V+ + +T+P+ IA +E A +P +RR
Sbjct: 9 RYEKARIIGARALQVAYGAPVLVDTD-QTEPILIAAEEYDADALPFTVRR 57
>sp|B0R4Y7|RPOK_HALS3 DNA-directed RNA polymerase subunit K OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoK PE=3 SV=1
Length = 60
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR++G RALQ+A APV+V+ + +T+P+ IA +E A +P +RR
Sbjct: 9 RYEKARIIGARALQVAYGAPVLVDTD-QTEPILIAAEEYDADALPFTVRR 57
>sp|A0B6E6|RPOK_METTP DNA-directed RNA polymerase subunit K OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=rpoK PE=3 SV=1
Length = 60
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+ERAR++G RALQI M APV++ + DPL+IA++E++ IPI ++R
Sbjct: 5 KYTRFERARIVGARALQIFMGAPVLIRTDS-IDPLEIALEEMRLGVIPITVKR 56
>sp|O26148|RPOK_METTH DNA-directed RNA polymerase subunit K OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoK PE=3 SV=1
Length = 61
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 39/53 (73%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+ERAR++G RALQI+M A +VE++ DP+ IA KEL+ + +P+ +RR
Sbjct: 7 KLTRFERARLIGARALQISMGARPLVEIKESLDPVDIARKELEKKVMPLDVRR 59
>sp|P29200|RPOK_HALMA DNA-directed RNA polymerase subunit K OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rpoK PE=3 SV=1
Length = 57
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 77 LNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
+N ++ RYE+AR LG RALQ+A APV++E E T P+ IA +E A +P + R
Sbjct: 1 MNAQESRYEKARKLGARALQLAHGAPVLIETE-HTQPILIAAEEYDAGVLPFTVNR 55
>sp|Q9HJ14|RPOK_THEAC DNA-directed RNA polymerase subunit K OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoK PE=3 SV=1
Length = 61
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 79 IKQIRYERARVLGTRALQIAMCAPVMVELEGE-TDPLQIAMKELKARKIPIIIRR 132
+K ++E+AR++G RALQIAM APV++++ DP+ IAM E + IPI I++
Sbjct: 1 MKYTKFEKARIIGARALQIAMGAPVIIDVPKNIIDPVDIAMLEFENNVIPITIKK 55
>sp|B9LPW5|RPOK_HALLT DNA-directed RNA polymerase subunit K OS=Halorubrum lacusprofundi
(strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34)
GN=rpoK PE=3 SV=1
Length = 59
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
RYE+AR+LG RALQ++ APV+++ + +T+P+ +A +E A +P +RR
Sbjct: 8 RYEKARILGARALQVSYGAPVLIDTD-QTEPILVAAEEYDAGALPFTVRR 56
>sp|C3MUV8|RPOK_SULIM DNA-directed RNA polymerase subunit K OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=rpoK PE=3 SV=1
Length = 95
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPD 136
K RYE ARV+ RALQ+AM AP ++++ TD + IA +E K +PI IRR LP+
Sbjct: 26 KLTRYEIARVISARALQLAMGAPALIDINNISLTDVISIAEEEFKRGVLPITIRRRLPN 84
>sp|C4KH38|RPOK_SULIK DNA-directed RNA polymerase subunit K OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=rpoK PE=3 SV=1
Length = 95
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPD 136
K RYE ARV+ RALQ+AM AP ++++ TD + IA +E K +PI IRR LP+
Sbjct: 26 KLTRYEIARVISARALQLAMGAPALIDINNISLTDVISIAEEEFKRGVLPITIRRRLPN 84
>sp|C3N5H2|RPOK_SULIA DNA-directed RNA polymerase subunit K OS=Sulfolobus islandicus
(strain M.16.27) GN=rpoK PE=3 SV=1
Length = 95
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPD 136
K RYE ARV+ RALQ+AM AP ++++ TD + IA +E K +PI IRR LP+
Sbjct: 26 KLTRYEIARVISARALQLAMGAPALIDINNISLTDVISIAEEEFKRGVLPITIRRRLPN 84
>sp|Q9YDJ9|RPOK_AERPE DNA-directed RNA polymerase subunit K OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rpoK PE=3 SV=2
Length = 89
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDNSYE 140
+YERAR++G RA Q+++ AP +V+ E G +PL IA E+ +P+ I RYLP +
Sbjct: 10 KYERARIIGVRAFQLSIGAPPLVDPERAGSRNPLDIARYEVDNGILPVSIYRYLPGGGGQ 69
Query: 141 DWGIDEL 147
+ L
Sbjct: 70 SLSLSRL 76
>sp|Q97ZJ9|RPOK_SULSO DNA-directed RNA polymerase subunit K OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoK
PE=1 SV=1
Length = 95
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPD 136
RYE ARV+ RALQ+AM AP ++++ TD + IA +E + +PI IRR LP+
Sbjct: 29 RYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPITIRRRLPN 84
>sp|P58232|RPOK_THEVO DNA-directed RNA polymerase subunit K OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=rpoK PE=3 SV=1
Length = 61
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVEL-EGETDPLQIAMKELKARKIPIIIRR 132
K ++E+AR++G RALQIAM APV++++ + DP+ IA E + IPI I+R
Sbjct: 2 KYTKFEKARIIGARALQIAMGAPVIIDIPKNVIDPVDIATIEFENNVIPITIKR 55
>sp|Q5JJD0|RPOK_PYRKO DNA-directed RNA polymerase subunit K OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rpoK PE=3
SV=1
Length = 57
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
R+E+AR++G RALQIAM APV++++ PLQ A+ E + IPI + R
Sbjct: 6 RFEKARIIGARALQIAMGAPVLIDVPEGITPLQAALLEFEKGVIPITVIR 55
>sp|C5A244|RPOK_THEGJ DNA-directed RNA polymerase subunit K OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=rpoK PE=3 SV=1
Length = 57
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
R+E+AR++G RALQIA+ APV+V++ + PLQ A+ E + IPI + R
Sbjct: 6 RFEKARIIGARALQIALGAPVLVDVPEGSTPLQAAIIEFEKGIIPITVIR 55
>sp|P62015|RPOK_PYRHO DNA-directed RNA polymerase subunit K OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=rpoK PE=3 SV=1
Length = 57
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+E+AR++G RALQIAM APV++++ PL+ A+ E + IPI + R
Sbjct: 3 KYTRFEKARIIGARALQIAMGAPVLIDVPEGITPLEAAIMEFEKGVIPITVIR 55
>sp|P62014|RPOK_PYRAB DNA-directed RNA polymerase subunit K OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=rpoK PE=3 SV=1
Length = 57
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+E+AR++G RALQIAM APV++++ PL+ A+ E + IPI + R
Sbjct: 3 KYTRFEKARIIGARALQIAMGAPVLIDVPEGITPLEAAIMEFEKGVIPITVIR 55
>sp|Q8ZTF9|RPOK_PYRAE DNA-directed RNA polymerase subunit K OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rpoK PE=3 SV=1
Length = 106
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDNSYE 140
+YE AR++G RALQ+AM A +V+++ G DP+ IAM+EL+ + II R +PD
Sbjct: 33 KYETARIIGARALQLAMGAQPLVDIQEVGSVDPVLIAMEELRRGLLDFIIVREMPDGKTM 92
Query: 141 DWGIDELKIIDR 152
+ EL ++R
Sbjct: 93 RIRLKELLELER 104
>sp|Q8U0E8|RPOK_PYRFU DNA-directed RNA polymerase subunit K OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpoK
PE=3 SV=1
Length = 57
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 80 KQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+E+AR++G RALQI+M APV++++ PL+ A+ E + IPI + R
Sbjct: 3 KYTRFEKARIIGARALQISMGAPVLIDVPPGITPLEAAILEFEKGVIPITVIR 55
>sp|B6YSQ8|RPOK_THEON DNA-directed RNA polymerase subunit K OS=Thermococcus onnurineus
(strain NA1) GN=rpoK PE=3 SV=1
Length = 57
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 79 IKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
K R+ERAR++G RALQIAM AP+++++ PL A+ E + IP+ + R
Sbjct: 2 FKYTRFERARIVGARALQIAMGAPILIDVPEGITPLDAALLEFEKGIIPLTVIR 55
>sp|P39463|RPOK_SULAC DNA-directed RNA polymerase subunit K OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoK PE=3 SV=2
Length = 89
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 63 MKVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKE 120
M + N+I N N K +YE AR++ RALQ++M A +++ D + IA +E
Sbjct: 1 MTIDKINEIFKENWKN-KLTKYEIARIISARALQLSMGALPLIDTSNLKSDDVISIAEEE 59
Query: 121 LKARKIPIIIRRYLPDNSYE 140
LK +PI IRR P+ E
Sbjct: 60 LKRGVLPITIRRIYPNGQVE 79
>sp|Q972B1|RPOK_SULTO DNA-directed RNA polymerase subunit K OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rpoK
PE=3 SV=1
Length = 86
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRRYLPDNSYE 140
+YE AR++ RALQ+AM A +++ D + IA +ELK +PI +RR P+ E
Sbjct: 17 KYEIARIISARALQLAMGASPLIDTNNLPFNDVISIAEEELKRGVLPITVRRVYPNGKIE 76
>sp|Q6L1M4|RPOK_PICTO DNA-directed RNA polymerase subunit K OS=Picrophilus torridus
(strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC
100828) GN=rpoK PE=3 SV=1
Length = 60
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 83 RYERARVLGTRALQIAMCAPV-MVELEGETDPLQIAMKELKARKIPIIIRR 132
++E+AR++G RALQIAM APV + DP+ IAM E + IPI I+R
Sbjct: 8 KFEKARIIGARALQIAMGAPVIIDISPDIIDPIDIAMIEFENNVIPITIKR 58
>sp|Q57650|RPOK_METJA DNA-directed RNA polymerase subunit K OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoK PE=3 SV=1
Length = 57
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 79 IKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPI 128
+K ++E AR+LG R+LQI+ A +E + ++ L+IA +E+K K+P+
Sbjct: 1 MKLTKFEIARILGARSLQISSGAYATIETKCDSS-LKIAYEEIKQGKVPL 49
>sp|P0C9D9|RPB6_ASFK5 DNA-directed RNA polymerase subunit 6 homolog OS=African swine
fever virus (isolate Pig/Kenya/KEN-50/1950) GN=Ken-081
PE=3 SV=1
Length = 147
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 84 YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL---PDNS-- 138
+E R++ RA Q+A+ M++ + + P+ IA +EL RKIP+++ R + PD
Sbjct: 74 FEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCIKVTPDGQKI 132
Query: 139 YEDWGIDELKI 149
E W E+ I
Sbjct: 133 VEIWNPREMGI 143
>sp|P0C9D8|RPB6_ASFWA DNA-directed RNA polymerase subunit 6 homolog OS=African swine
fever virus (isolate Warthog/Namibia/Wart80/1980)
GN=War-079 PE=3 SV=1
Length = 147
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 84 YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL---PDNS-- 138
+E R++ RA Q+A+ M++ + + P+ IA +EL RKIP+++ R + PD
Sbjct: 74 FEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCIKVTPDGQKI 132
Query: 139 YEDWGIDELKI 149
E W E+ I
Sbjct: 133 VEIWNPREMGI 143
>sp|P0C9D7|RPB6_ASFP4 DNA-directed RNA polymerase subunit 6 homolog OS=African swine
fever virus (isolate Tick/South Africa/Pretoriuskop
Pr4/1996) GN=Pret-081 PE=3 SV=1
Length = 147
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 84 YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL---PDNS-- 138
+E R++ RA Q+A+ M++ + + P+ IA +EL RKIP+++ R + PD
Sbjct: 74 FEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCIKVTPDGQKI 132
Query: 139 YEDWGIDELKI 149
E W E+ I
Sbjct: 133 VEIWNPREMGI 143
>sp|Q08399|RPO6_ASFM2 DNA-directed RNA polymerase subunit 6 homolog OS=African swine
fever virus (isolate Tick/Malawi/Lil 20-1/1983)
GN=PMWK-CL PE=3 SV=1
Length = 139
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 84 YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
+E R++ RA Q+A+ M++ + + P+ IA +EL RKIP+++ R
Sbjct: 78 FEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMR 125
>sp|P42484|RPB6_ASFB7 DNA-directed RNA polymerase subunit 6 homolog OS=African swine
fever virus (strain Badajoz 1971 Vero-adapted)
GN=Ba71V-069 PE=3 SV=1
Length = 147
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 84 YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
+E R++ RA Q+A+ M++ + + P+ IA +EL RKIP+++ R
Sbjct: 74 FEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMR 121
>sp|P0C9D6|RPB6_ASFM2 DNA-directed RNA polymerase subunit 6 homolog OS=African swine
fever virus (isolate Tick/Malawi/Lil 20-1/1983)
GN=Mal-077 PE=3 SV=1
Length = 151
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 84 YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 132
+E R++ RA Q+A+ M++ + + P+ IA +EL RKIP+++ R
Sbjct: 78 FEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMR 125
>sp|B0U6W4|RPOZ_XYLFM DNA-directed RNA polymerase subunit omega OS=Xylella fastidiosa
(strain M12) GN=rpoZ PE=3 SV=1
Length = 98
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 83 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKI 126
R+E + RA Q+A P ++E E P +A++E+ ARKI
Sbjct: 16 RFELVMMASKRARQLANGVPPLIENNSEDKPTVLALREIAARKI 59
>sp|P10688|PLCD1_RAT 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1
OS=Rattus norvegicus GN=Plcd1 PE=1 SV=1
Length = 756
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 26 LDENAPTPSKANKWMGDLNLILGIKGERALVLILNHYMKVKSKNQIKN-NNKLNIKQIR 83
LD AP+P+ A W+ L I+ G L H++ + KN +NK+N K+++
Sbjct: 108 LDLIAPSPADAQHWVQGLRKIIHHSGSMDQRQKLQHWIHSCLRKADKNKDNKMNFKELK 166
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,798,360
Number of Sequences: 539616
Number of extensions: 2046280
Number of successful extensions: 5200
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 5139
Number of HSP's gapped (non-prelim): 56
length of query: 152
length of database: 191,569,459
effective HSP length: 107
effective length of query: 45
effective length of database: 133,830,547
effective search space: 6022374615
effective search space used: 6022374615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)