RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8360
         (152 letters)



>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 127

 Score =  123 bits (310), Expect = 8e-38
 Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 4/94 (4%)

Query: 58  ILNHYMKVKSKNQIKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIA 117
           IL    + ++  +      +     +YERARVLGTRALQIAMCAPVMVELEGETDPL IA
Sbjct: 38  ILPSGERPQANQKRITTPYMT----KYERARVLGTRALQIAMCAPVMVELEGETDPLLIA 93

Query: 118 MKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 151
           MKELKARKIPIIIRRYLPD SYEDWG+DEL I D
Sbjct: 94  MKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127


>d1twff_ a.143.1.2 (F:) RPB6 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 84

 Score =  115 bits (289), Expect = 4e-35
 Identities = 49/79 (62%), Positives = 62/79 (78%)

Query: 71  IKNNNKLNIKQIRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIII 130
            K+         +YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL  +KIP++I
Sbjct: 4   PKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVI 63

Query: 131 RRYLPDNSYEDWGIDELKI 149
           RRYLPD S+EDW ++EL +
Sbjct: 64  RRYLPDGSFEDWSVEELIV 82


>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus)
          [TaxId: 9031]}
          Length = 158

 Score = 25.5 bits (56), Expect = 2.4
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 11/75 (14%)

Query: 36 ANKWMGDLNLILGIKGERALVLILNHYMKVKSKNQIKNNNKL-----NIKQIRYE----R 86
          A +W+ +  +     G+ A+  ++    ++ +         L      + Q+  +     
Sbjct: 12 AQRWIDNPTVDDRGVGQAAIRGLVAEGRRLANVMMGPYRQDLLAKCDRVDQLAAQLADLA 71

Query: 87 ARVLGTR--ALQIAM 99
          AR  G    A  IA 
Sbjct: 72 ARGEGESPQARAIAA 86


>d1rh1a1 b.110.1.1 (A:10-312) Colicin B N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 303

 Score = 25.7 bits (56), Expect = 2.9
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 101 APVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE--DW 142
           AP M    G+  P  IA+  +++   P IIRR + D   E  DW
Sbjct: 33  APSMPPGWGDYSPQGIAL--VQSVLFPGIIRRIILDKELEEGDW 74


>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of
           imidazoleglycerolphosphate synthase HisF {Baker's yeast
           (Saccharomyces cerevisiae), His7 [TaxId: 4932]}
          Length = 323

 Score = 24.0 bits (51), Expect = 9.5
 Identities = 4/13 (30%), Positives = 7/13 (53%)

Query: 139 YEDWGIDELKIID 151
           Y   G DE+  ++
Sbjct: 57  YYQQGADEVTFLN 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 598,825
Number of extensions: 26187
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 12
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.2 bits)