BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8363
(536 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5TP13|MED15_ANOGA Mediator of RNA polymerase II transcription subunit 15 OS=Anopheles
gambiae GN=MED15 PE=3 SV=3
Length = 762
Score = 311 bits (797), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 166/314 (52%), Positives = 216/314 (68%), Gaps = 24/314 (7%)
Query: 1 MVASPALVPSPSAPLSQSMPGQMRSVGMAPSPSGSLNTPGQ-AQPTSSPCPTQEDQVYRD 59
M+ SPAL+PSP+ M G + + SP GSLNTPGQ SP Q++Q+YR+
Sbjct: 446 MIPSPALIPSPNP----HMGGVAQRSTIGQSPGGSLNTPGQPGGAVPSPLNPQDEQLYRE 501
Query: 60 KIRQLSKYIEPLRRMIARAANDDIEKTTKMKKLLEILQSPNKRMPLETLLKCEHVLEKLD 119
K R L+KYIEPL+RMIA+ NDDI+K KMK+LLEIL +P+ R+PLETL KCE L
Sbjct: 502 KYRALTKYIEPLKRMIAKMENDDIDKIAKMKRLLEILSNPSVRIPLETLHKCEAALTS-- 559
Query: 120 FKHSSLLRD---HHPLLEAVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKR 176
+R+ ++PL+EAVS +LQ++ NHTLQRTF PCLE L GP IK+LP P + R
Sbjct: 560 --QLGSIRETPTNNPLVEAVSSSLQAATGNHTLQRTFRPCLEALFGPDIKNLPPPAKQSR 617
Query: 177 VE---------EPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPC 227
+ ++P +LQGEIARLDQ+FKVSLD SG++ I+L+CWLDD++LPC
Sbjct: 618 LALDDTGAAVGTGGGEIPHILQGEIARLDQKFKVSLDQCAISGTRTIKLICWLDDKNLPC 677
Query: 228 VPPIQVSIPEDYPSHPPRCTM-GHEHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWE 286
VPP+ V+IPEDYPS P C++ E+N TPFL V+ +L +RI KLP +++S LLDTWE
Sbjct: 678 VPPVAVTIPEDYPSTAPSCSLIEQEYNATPFLILVQKSLMARICKLPGLFTLSHLLDTWE 737
Query: 287 MSVRQACAPTRNPT 300
MSVRQAC+P NPT
Sbjct: 738 MSVRQACSP--NPT 749
Score = 125 bits (314), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 84/125 (67%), Gaps = 10/125 (8%)
Query: 422 PPRKDLPLPVNRKRVE---------EPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKA 472
P K+LP P + R+ ++P +LQGEIARLDQ+FKVSLD SG++
Sbjct: 604 PDIKNLPPPAKQSRLALDDTGAAVGTGGGEIPHILQGEIARLDQKFKVSLDQCAISGTRT 663
Query: 473 IQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTM-GHEHNTTPFLTSVKNALESRIKKL 531
I+L+CWLDD++LPCVPP+ V+IPEDYPS P C++ E+N TPFL V+ +L +RI KL
Sbjct: 664 IKLICWLDDKNLPCVPPVAVTIPEDYPSTAPSCSLIEQEYNATPFLILVQKSLMARICKL 723
Query: 532 PLKYS 536
P ++
Sbjct: 724 PGLFT 728
>sp|Q17BA4|MED15_AEDAE Mediator of RNA polymerase II transcription subunit 15 OS=Aedes
aegypti GN=MED15 PE=3 SV=1
Length = 779
Score = 306 bits (785), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 164/309 (53%), Positives = 214/309 (69%), Gaps = 21/309 (6%)
Query: 1 MVASPALVPSPSAPLSQSMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYRDK 60
M+ SPAL+PSPS +S ++P R++G SP SLNTPGQA SP QE+ +Y++K
Sbjct: 464 MIPSPALIPSPSPQVSSNIPAP-RNIGQ--SPGQSLNTPGQAA-APSPLNPQEEHLYKEK 519
Query: 61 IRQLSKYIEPLRRMIARAANDDIEKTTKMKKLLEILQSPNKRMPLETLLKCEHVLEKLDF 120
R L KYIEPL+RMIA+ +DD++K KMK+LL+IL +P R+PLETL KCE L
Sbjct: 520 YRSLQKYIEPLKRMIAKMEHDDVDKMGKMKRLLDILCNPTCRIPLETLYKCEAALTS--- 576
Query: 121 KHSSLLRD---HHPLLEAVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKR- 176
+R+ ++PL+EAVS LQS NHTLQRTF PCLE L GP IK+LP P + R
Sbjct: 577 -QLGTIREPPLNNPLVEAVSANLQSPLGNHTLQRTFRPCLEALFGPDIKNLPTPAKQPRL 635
Query: 177 -VEEPA-------DDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCV 228
++EP+ ++P +LQGEIARLDQ+FKVSLDP +K I+L+CWLDD+HLPCV
Sbjct: 636 AIDEPSTSGSTGSQEIPHILQGEIARLDQKFKVSLDPCAIGDTKTIKLICWLDDKHLPCV 695
Query: 229 PPIQVSIPEDYPSHPPRCTM-GHEHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEM 287
PP+ V+IPE+YP P C++ E+N TPFL V+ + +RI KLP +S+S LLDTWEM
Sbjct: 696 PPVAVTIPEEYPFTSPSCSLIEQEYNATPFLIQVQKSFLARICKLPEMFSLSHLLDTWEM 755
Query: 288 SVRQACAPT 296
SVRQAC+P
Sbjct: 756 SVRQACSPN 764
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 85/125 (68%), Gaps = 10/125 (8%)
Query: 422 PPRKDLPLPVNRKR--VEEPA-------DDVPEVLQGEIARLDQRFKVSLDPTQQSGSKA 472
P K+LP P + R ++EP+ ++P +LQGEIARLDQ+FKVSLDP +K
Sbjct: 621 PDIKNLPTPAKQPRLAIDEPSTSGSTGSQEIPHILQGEIARLDQKFKVSLDPCAIGDTKT 680
Query: 473 IQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTM-GHEHNTTPFLTSVKNALESRIKKL 531
I+L+CWLDD+HLPCVPP+ V+IPE+YP P C++ E+N TPFL V+ + +RI KL
Sbjct: 681 IKLICWLDDKHLPCVPPVAVTIPEEYPFTSPSCSLIEQEYNATPFLIQVQKSFLARICKL 740
Query: 532 PLKYS 536
P +S
Sbjct: 741 PEMFS 745
>sp|Q9Y149|MED15_DROME Mediator of RNA polymerase II transcription subunit 15
OS=Drosophila melanogaster GN=MED15 PE=2 SV=1
Length = 749
Score = 275 bits (702), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 164/309 (53%), Positives = 212/309 (68%), Gaps = 14/309 (4%)
Query: 1 MVASPALVPSPSAPLSQSMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYRDK 60
M+ SPALVP S+P M R++ SPS S+NTPGQ +SP QE+ +YR+K
Sbjct: 433 MIPSPALVPQ-SSPQMMQMQNSQRNI-RQQSPSASINTPGQVT-GNSPFNPQEEALYREK 489
Query: 61 IRQLSKYIEPLRRMIARAAND--DIEKTTKMKKLLEILQSPNKRMPLETLLKCEHVLEKL 118
+QL+KYIEPL+RM+A+ +ND ++EK TKM KLLEIL +P +R+PLETLLKCE LEK+
Sbjct: 490 YKQLTKYIEPLKRMLAKISNDGTNVEKMTKMSKLLEILCNPTQRVPLETLLKCEKALEKM 549
Query: 119 D---FKHSSLLRDHHPLLEAVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRK 175
D + + +PLLE ++ LQS ANHTL RTF P LE+L G I P+P R
Sbjct: 550 DLISYSGQQFGKSSNPLLEVINTTLQSPVANHTLYRTFRPTLELLFGTDIT-APVPAKRP 608
Query: 176 RVEEPA----DDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPI 231
RVEE + +VP VLQGEIARLD +FKV LD T Q +KAI+L+C LDD+ LP VPP+
Sbjct: 609 RVEEKSTSFEQEVPHVLQGEIARLDTKFKVKLDTTSQINNKAIRLICCLDDKRLPSVPPV 668
Query: 232 QVSIPEDYPSHPPRCTMG-HEHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVR 290
VS+PE+YP P C++ E++ TPFL +V+ AL +RI KLP YS+S LLDTWEM+VR
Sbjct: 669 SVSVPEEYPWQAPDCSLAEQEYSATPFLQTVQQALIARISKLPKNYSLSHLLDTWEMAVR 728
Query: 291 QACAPTRNP 299
QAC+P P
Sbjct: 729 QACSPQSKP 737
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 80/114 (70%), Gaps = 5/114 (4%)
Query: 428 PLPVNRKRVEEPA----DDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRH 483
P+P R RVEE + +VP VLQGEIARLD +FKV LD T Q +KAI+L+C LDD+
Sbjct: 602 PVPAKRPRVEEKSTSFEQEVPHVLQGEIARLDTKFKVKLDTTSQINNKAIRLICCLDDKR 661
Query: 484 LPCVPPIQVSIPEDYPSHPPRCTMG-HEHNTTPFLTSVKNALESRIKKLPLKYS 536
LP VPP+ VS+PE+YP P C++ E++ TPFL +V+ AL +RI KLP YS
Sbjct: 662 LPSVPPVSVSVPEEYPWQAPDCSLAEQEYSATPFLQTVQQALIARISKLPKNYS 715
>sp|Q7ZVN7|MED15_DANRE Mediator of RNA polymerase II transcription subunit 15 OS=Danio
rerio GN=med15 PE=2 SV=1
Length = 809
Score = 214 bits (546), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 127/285 (44%), Positives = 171/285 (60%), Gaps = 25/285 (8%)
Query: 30 PSPSGSLNTPGQAQPTSSPCPTQ--EDQVYRDKIRQLSKYIEPLRRMIARA-ANDDIEKT 86
PSP G LNTPG SP EDQ+Y DK+RQLSKYIEPLRRMI + N+D +K
Sbjct: 526 PSP-GPLNTPGNPSSVMSPAGASQSEDQLYMDKLRQLSKYIEPLRRMINKIDKNEDRKKD 584
Query: 87 -TKMKKLLEILQSPNKRMPLETLLKCEHVLEKLDFKHSSLLRDH------------HPLL 133
+KMK LL IL PN R PL+TL KCE LEKL + P+L
Sbjct: 585 LSKMKSLLNILTDPNTRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPCTKKQYLCQPIL 644
Query: 134 EAVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKRVEEPADD----VPEVLQ 189
+AV ++S NH+L RTF P + + GP I +P ++++E DD +P +LQ
Sbjct: 645 DAVLANIRSPVFNHSLYRTFAPAMTAIHGPQITGPSIPSRKRKLE---DDERQAIPNILQ 701
Query: 190 GEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRC-TM 248
GE+ARL+ +F V+LDP+ S + + L+C LDD++LP VPP+Q+SIP DYP P
Sbjct: 702 GEVARLNSKFLVNLDPSFCSNNGMVHLICKLDDKNLPSVPPLQLSIPADYPDQSPHWEDD 761
Query: 249 GHEHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQAC 293
G ++ PFL +V + S++ +LP K+SV+ LL+TW SVRQAC
Sbjct: 762 GQQYEANPFLRTVHKNMTSKLLQLPDKHSVTALLNTWAQSVRQAC 806
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 433 RKRVEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQV 492
RK ++ +P +LQGE+ARL+ +F V+LDP+ S + + L+C LDD++LP VPP+Q+
Sbjct: 686 RKLEDDERQAIPNILQGEVARLNSKFLVNLDPSFCSNNGMVHLICKLDDKNLPSVPPLQL 745
Query: 493 SIPEDYPSHPPRC-TMGHEHNTTPFLTSVKNALESRIKKLPLKYS 536
SIP DYP P G ++ PFL +V + S++ +LP K+S
Sbjct: 746 SIPADYPDQSPHWEDDGQQYEANPFLRTVHKNMTSKLLQLPDKHS 790
>sp|Q6NS15|MED15_XENLA Mediator of RNA polymerase II transcription subunit 15 OS=Xenopus
laevis GN=med15 PE=1 SV=1
Length = 777
Score = 208 bits (530), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 122/282 (43%), Positives = 166/282 (58%), Gaps = 19/282 (6%)
Query: 30 PSPSGSLNTPGQAQPTSSPCPTQ--EDQVYRDKIRQLSKYIEPLRRMIARAANDDIEKT- 86
PSP G LNTPG SP E+Q Y DK++QLSKYIEPLRRMI + ++ K
Sbjct: 493 PSP-GPLNTPGNPNSVMSPASNNQSEEQQYLDKLKQLSKYIEPLRRMINKIDKNEERKKD 551
Query: 87 -TKMKKLLEILQSPNKRMPLETLLKCEHVLEKLDFKHSSLLRDH------------HPLL 133
+KMK LL+IL PNKR PL+TL KCE LEKL + PLL
Sbjct: 552 LSKMKSLLDILTDPNKRCPLKTLQKCEIALEKLKNDMAVPTPPPPTVPSTKQQYLCQPLL 611
Query: 134 EAVSGALQSSNANHTLQRTFGPCLEILSG-PLIKDLPLPVNRKRVEEPADDVPEVLQGEI 192
+AV ++S NH+L RTF P + + G P+ L +P RK E+ +P VLQGE+
Sbjct: 612 DAVLANIRSPVFNHSLYRTFMPAMTAIHGQPIASQLVVPRKRKFEEDERQSIPNVLQGEV 671
Query: 193 ARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTMG-HE 251
A+L +F V+LDP+ S + + L+C LDD++LP VPP+Q+S+P DYP P +
Sbjct: 672 AKLHSKFLVNLDPSHCSNNGTVYLICKLDDKNLPSVPPLQLSVPADYPDQSPLWMDNPRD 731
Query: 252 HNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQAC 293
+ PFL SV + S++ +LP K+S++ LL+TW S+RQAC
Sbjct: 732 YEANPFLQSVYRYMTSKLLQLPDKHSLTALLNTWAQSIRQAC 773
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 422 PPRKDLPLPVNRKRVEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDD 481
P L +P RK E+ +P VLQGE+A+L +F V+LDP+ S + + L+C LDD
Sbjct: 642 PIASQLVVPRKRKFEEDERQSIPNVLQGEVAKLHSKFLVNLDPSHCSNNGTVYLICKLDD 701
Query: 482 RHLPCVPPIQVSIPEDYPSHPPRCTMG-HEHNTTPFLTSVKNALESRIKKLPLKYS 536
++LP VPP+Q+S+P DYP P ++ PFL SV + S++ +LP K+S
Sbjct: 702 KNLPSVPPLQLSVPADYPDQSPLWMDNPRDYEANPFLQSVYRYMTSKLLQLPDKHS 757
>sp|Q96RN5|MED15_HUMAN Mediator of RNA polymerase II transcription subunit 15 OS=Homo
sapiens GN=MED15 PE=1 SV=2
Length = 788
Score = 202 bits (513), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 128/285 (44%), Positives = 170/285 (59%), Gaps = 25/285 (8%)
Query: 30 PSPSGSLNTPGQAQPTSSPCPTQ--EDQVYRDKIRQLSKYIEPLRRMIARA-ANDDIEKT 86
PSP G LNTP SP + E+Q Y DK++QLSKYIEPLRRMI + N+D +K
Sbjct: 504 PSP-GPLNTPVNPSSVMSPAGSSQAEEQQYLDKLKQLSKYIEPLRRMINKIDKNEDRKKD 562
Query: 87 -TKMKKLLEILQSPNKRMPLETLLKCEHVLEKLDFKHSSLLRDH------------HPLL 133
+KMK LL+IL P+KR PL+TL KCE LEKL + PLL
Sbjct: 563 LSKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPPTKQQYLCQPLL 622
Query: 134 EAVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKRVEEPADD----VPEVLQ 189
+AV ++S NH+L RTF P + + GP I P+ RKR E DD +P VLQ
Sbjct: 623 DAVLANIRSPVFNHSLYRTFVPAMTAIHGPPIT-APVVCTRKRRLE--DDERQSIPSVLQ 679
Query: 190 GEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPP-RCTM 248
GE+ARLD +F V+LDP+ S + + L+C LDD+ LP VPP+++S+P DYP+ P
Sbjct: 680 GEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYPAQSPLWIDR 739
Query: 249 GHEHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQAC 293
+++ PFL SV + SR+ +LP K+SV+ LL+TW SV QAC
Sbjct: 740 QWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQAC 784
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 72/114 (63%), Gaps = 7/114 (6%)
Query: 428 PLPVNRKRVEEPADD----VPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRH 483
P+ RKR E DD +P VLQGE+ARLD +F V+LDP+ S + + L+C LDD+
Sbjct: 657 PVVCTRKRRLE--DDERQSIPSVLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKD 714
Query: 484 LPCVPPIQVSIPEDYPSHPP-RCTMGHEHNTTPFLTSVKNALESRIKKLPLKYS 536
LP VPP+++S+P DYP+ P +++ PFL SV + SR+ +LP K+S
Sbjct: 715 LPSVPPLELSVPADYPAQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHS 768
>sp|Q924H2|MED15_MOUSE Mediator of RNA polymerase II transcription subunit 15 OS=Mus
musculus GN=Med15 PE=2 SV=2
Length = 792
Score = 199 bits (506), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 126/286 (44%), Positives = 170/286 (59%), Gaps = 24/286 (8%)
Query: 30 PSPSGSLNTPGQAQPTSSPCPTQ--EDQVYRDKIRQLSKYIEPLRRMIARA-ANDDIEKT 86
PSP G LNTP SP + E+Q Y DK++QLSKYIEPLRRMI + N+D +K
Sbjct: 505 PSP-GPLNTPVNPSSVMSPAGSSQAEEQQYLDKLKQLSKYIEPLRRMINKIDKNEDRKKD 563
Query: 87 -TKMKKLLEILQSPNKRMPLETLLKCEHVLEKLDFKHSSLLRDH------------HPLL 133
+KMK LL+IL P+KR PL+TL KCE LEKL + PLL
Sbjct: 564 LSKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVLPTKQQDLCQPLL 623
Query: 134 EAVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRK----RVEEPA-DDVPEVL 188
+AV ++S NH+L RTF P + + GP I P+ +RK R EE +P VL
Sbjct: 624 DAVLANIRSPVFNHSLYRTFVPAMMAIHGPPIVS-PVVCSRKSPVRRFEEDERQSIPNVL 682
Query: 189 QGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCT- 247
QGE+ARLD +F V+LDP+ S + + L+C LDD+ LP VPP+++S+P DYP+ P
Sbjct: 683 QGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYPAQSPMWID 742
Query: 248 MGHEHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQAC 293
+++ PFL SV + SR+ +LP K+SV+ LL+TW S+ QAC
Sbjct: 743 RQWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSIHQAC 788
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 433 RKRVEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQV 492
R+ E+ +P VLQGE+ARLD +F V+LDP+ S + + L+C LDD+ LP VPP+++
Sbjct: 668 RRFEEDERQSIPNVLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLEL 727
Query: 493 SIPEDYPSHPPRCT-MGHEHNTTPFLTSVKNALESRIKKLPLKYS 536
S+P DYP+ P +++ PFL SV + SR+ +LP K+S
Sbjct: 728 SVPADYPAQSPMWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHS 772
>sp|P17078|RL35_RAT 60S ribosomal protein L35 OS=Rattus norvegicus GN=Rpl35 PE=1 SV=3
Length = 123
Score = 145 bits (367), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 80/118 (67%), Positives = 96/118 (81%), Gaps = 2/118 (1%)
Query: 308 KVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+K +LR K K+ELLKQL++LK EL+ LRVAKVTGGAASKLSKIRVVRK+I RV V++
Sbjct: 3 KIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVIN 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
Q QKEN+R + KKYKPLDLRPKKTRA+RRRLTKHE KLKT K+ R+ + +P RK
Sbjct: 63 QTQKENLRKFYK--GKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRK 118
>sp|Q6ZWV7|RL35_MOUSE 60S ribosomal protein L35 OS=Mus musculus GN=Rpl35 PE=2 SV=1
Length = 123
Score = 145 bits (367), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 80/118 (67%), Positives = 96/118 (81%), Gaps = 2/118 (1%)
Query: 308 KVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+K +LR K K+ELLKQL++LK EL+ LRVAKVTGGAASKLSKIRVVRK+I RV V++
Sbjct: 3 KIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVIN 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
Q QKEN+R + KKYKPLDLRPKKTRA+RRRLTKHE KLKT K+ R+ + +P RK
Sbjct: 63 QTQKENLRKFYK--GKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRK 118
>sp|Q69CJ9|RL35_OPHHA 60S ribosomal protein L35 OS=Ophiophagus hannah GN=RPL35 PE=2 SV=3
Length = 123
Score = 145 bits (366), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 79/119 (66%), Positives = 95/119 (79%), Gaps = 2/119 (1%)
Query: 307 VKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVM 366
K+K +LR K K+ELLKQL++LK EL+ LRVAKVTGGAASKLSKIRVVRK+I RV V+
Sbjct: 2 AKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVI 61
Query: 367 HQKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
+Q QKEN+R + KKYKPLDLRPKKTRA+RRRL KHE LKT K+ R+ + +PPRK
Sbjct: 62 NQTQKENLRKFYK--GKKYKPLDLRPKKTRAMRRRLNKHEEGLKTKKQQRKERLYPPRK 118
>sp|Q29361|RL35_PIG 60S ribosomal protein L35 OS=Sus scrofa GN=RPL35 PE=2 SV=3
Length = 123
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/118 (66%), Positives = 94/118 (79%), Gaps = 2/118 (1%)
Query: 308 KVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+K +LR K K+ELLKQLE+LK EL+ LRVAKVTGGAASKLSKIRVVRK+I RV V++
Sbjct: 3 KIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVIN 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
Q QKEN+R + KKYKPLDLRPKKTRA+RRRL KHE LKT K+ R+ + +P RK
Sbjct: 63 QTQKENLRKFYK--GKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRK 118
>sp|Q3MHM7|RL35_BOVIN 60S ribosomal protein L35 OS=Bos taurus GN=RPL35 PE=2 SV=3
Length = 123
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/119 (66%), Positives = 94/119 (78%), Gaps = 2/119 (1%)
Query: 307 VKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVM 366
K+K +LR K K+ELLKQLE+LK EL+ LRVAKVTGGAASKLSKIRVVRK+I RV V+
Sbjct: 2 AKIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVI 61
Query: 367 HQKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
+Q QKEN+R + KKYKPLDLRPKKTRA+RRRL KHE LKT K+ R+ + +P RK
Sbjct: 62 NQTQKENLRKFYK--GKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRK 118
>sp|Q98TF7|RL35_CHICK 60S ribosomal protein L35 OS=Gallus gallus GN=RPL35 PE=2 SV=3
Length = 123
Score = 142 bits (358), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 78/118 (66%), Positives = 94/118 (79%), Gaps = 2/118 (1%)
Query: 308 KVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+K +LR K K+ELLKQL++LK EL+ LRVAKVTGGAASKLSKIRVVRK+I RV V++
Sbjct: 3 KIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVIN 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
Q QKEN+R + KKYKPLDLRPKKTRA+RRRL KHE LKT K+ R+ + +P RK
Sbjct: 63 QTQKENLRKFYK--GKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPVRK 118
>sp|P42766|RL35_HUMAN 60S ribosomal protein L35 OS=Homo sapiens GN=RPL35 PE=1 SV=2
Length = 123
Score = 142 bits (357), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 78/119 (65%), Positives = 94/119 (78%), Gaps = 2/119 (1%)
Query: 307 VKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVM 366
K+K +LR K K+ELLKQL++LK EL+ LRVAKVTGGAASKLSKIRVVRK+I RV V+
Sbjct: 2 AKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVI 61
Query: 367 HQKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
+Q QKEN+R + KKYKPLDLRPKKTRA+RRRL KHE LKT K+ R+ + +P RK
Sbjct: 62 NQTQKENLRKFYK--GKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRK 118
>sp|Q6PBC1|RL35_XENTR 60S ribosomal protein L35 OS=Xenopus tropicalis GN=rpl35 PE=2 SV=3
Length = 123
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/119 (65%), Positives = 93/119 (78%), Gaps = 2/119 (1%)
Query: 307 VKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVM 366
K+K +LR K K+ELLKQL++LK EL+ LRVAKVTGGAASKLSKIRVVRK+I RV V+
Sbjct: 2 AKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVI 61
Query: 367 HQKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
+Q QKEN+R + KKYKPLDLRPKKTRALRRRL KHE L+T K+ R+ + F RK
Sbjct: 62 NQTQKENLRKFYK--GKKYKPLDLRPKKTRALRRRLNKHEEGLRTKKQQRKDRLFSARK 118
>sp|Q6UZF7|RL35_HIPCM 60S ribosomal protein L35 OS=Hippocampus comes GN=rpl35 PE=2 SV=3
Length = 123
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/119 (64%), Positives = 91/119 (76%), Gaps = 2/119 (1%)
Query: 307 VKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVM 366
K+K +LR K K+ELLKQL++LK EL+ LRVAKVTGGAASKLSKIRVVRK+I RV V+
Sbjct: 2 AKIKARDLRGKKKEELLKQLDDLKNELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVI 61
Query: 367 HQKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
Q QKEN+R + KKYKPLDLRPKKTRALRRRL KHE L+T K+ R+ + RK
Sbjct: 62 TQTQKENLRKFYK--GKKYKPLDLRPKKTRALRRRLNKHEESLRTKKQQRKDLLYSIRK 118
>sp|Q8JHJ1|RL35_DANRE 60S ribosomal protein L35 OS=Danio rerio GN=rpl35 PE=2 SV=3
Length = 123
Score = 135 bits (341), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 76/118 (64%), Positives = 92/118 (77%), Gaps = 2/118 (1%)
Query: 308 KVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+K +LR K K+ELLKQL++LK EL+ LRVAKVTGGAASKLSKIRVVRK+I RV V++
Sbjct: 3 KIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVIN 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
Q QKEN+R + KKYKPLDLRPKKTRA+RR+LTKHE L T K R+ + + RK
Sbjct: 63 QTQKENLRKFYK--GKKYKPLDLRPKKTRAIRRQLTKHEENLMTKKMQRKSRLYSIRK 118
>sp|Q90YT4|RL35_ICTPU 60S ribosomal protein L35 OS=Ictalurus punctatus GN=rpl35 PE=2 SV=3
Length = 123
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/118 (62%), Positives = 92/118 (77%), Gaps = 2/118 (1%)
Query: 308 KVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+K +LR K K+ELLK +++LK EL+ LRVAKVTGGAASKLSKIRVVRK+I RV V++
Sbjct: 3 KIKARDLRGKKKEELLKHVDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVIN 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
Q QKEN+R + KKYKPLDLRP+KTRA+RR+LTKHE+ L T K RR + + RK
Sbjct: 63 QTQKENLRKFY--KGKKYKPLDLRPRKTRAIRRQLTKHEQGLMTKKMQRRSRLYSMRK 118
>sp|Q5DVH6|RL35_PLAFE 60S ribosomal protein L35 OS=Platichthys flesus GN=rpl35 PE=2 SV=3
Length = 123
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 90/119 (75%), Gaps = 2/119 (1%)
Query: 307 VKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVM 366
K+K +LR K K+ELLKQL++LK E + LRVAKVTGGAASKL+KI VVRK+I RV V+
Sbjct: 2 AKIKARDLRGKKKEELLKQLDDLKNEPSQLRVAKVTGGAASKLTKICVVRKSIARVLTVI 61
Query: 367 HQKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
+Q QKEN+R + KKYKPLDLRP+KTRALRRRL KHE L+T K+ R+ + RK
Sbjct: 62 NQTQKENLRKFYK--GKKYKPLDLRPRKTRALRRRLNKHEESLRTKKQQRKDLLYSIRK 118
>sp|Q9M5L0|RL35_EUPES 60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1
Length = 123
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/118 (59%), Positives = 89/118 (75%), Gaps = 2/118 (1%)
Query: 308 KVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
++K ELR K K ELL QL++LK ELA LRVAKVTGGA +KLSKI+VVR +I +V V+
Sbjct: 3 RIKVHELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVIS 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
QKQK +R + +KK+ PLDLRPKKTRA+RRRLTKH++ LKT +E ++ FP RK
Sbjct: 63 QKQKLALREAYK--NKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRK 118
>sp|Q9M3D2|RL353_ARATH 60S ribosomal protein L35-3 OS=Arabidopsis thaliana GN=RPL35C PE=1
SV=1
Length = 123
Score = 119 bits (297), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 70/118 (59%), Positives = 87/118 (73%), Gaps = 2/118 (1%)
Query: 308 KVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
++K ELR K K +L QL+ELK ELA+LRVAKVTGGA +KLSKI+VVRK+I +V V
Sbjct: 3 RIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSS 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
QKQK +R + +KK PLDLRPKKTRA+RRRLTKH+ LKT +E ++ FP RK
Sbjct: 63 QKQKSALREAYK--NKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRK 118
>sp|Q9LZ41|RL354_ARATH 60S ribosomal protein L35-4 OS=Arabidopsis thaliana GN=RPL35D PE=2
SV=1
Length = 123
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/118 (58%), Positives = 86/118 (72%), Gaps = 2/118 (1%)
Query: 308 KVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
++K ELR K K +L QL+E K ELA LRVAKVTGGA +KLSKI+VVRK+I +V V+
Sbjct: 3 RIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVIS 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
QKQK +R + +KK PLDLRPKKTRA+RRRLTKH+ LKT +E ++ FP RK
Sbjct: 63 QKQKSALREAYK--NKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRK 118
>sp|Q9SF53|RL351_ARATH 60S ribosomal protein L35-1 OS=Arabidopsis thaliana GN=RPL35A PE=1
SV=1
Length = 123
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/118 (59%), Positives = 86/118 (72%), Gaps = 2/118 (1%)
Query: 308 KVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
++K ELR K K +L QL+ELK ELA LRVAKVTGGA +KLSKI+VVRK+I +V V
Sbjct: 3 RIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSS 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
QKQK +R + +KK PLDLRPKKTRA+RRRLTKH+ LKT +E ++ FP RK
Sbjct: 63 QKQKSALREAYK--NKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRK 118
>sp|O80626|RL352_ARATH 60S ribosomal protein L35-2 OS=Arabidopsis thaliana GN=RPL35B PE=2
SV=1
Length = 123
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/118 (58%), Positives = 86/118 (72%), Gaps = 2/118 (1%)
Query: 308 KVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
++K ELR K K +L QL+E K ELA LRVAKVTGGA +KLSKI+VVRK+I +V V+
Sbjct: 3 RIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVIS 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
QKQK +R + +KK PLDLRPKKTRA+RRRLTKH+ LKT +E ++ FP RK
Sbjct: 63 QKQKSALREAYK--NKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRK 118
>sp|P34662|RL35_CAEEL 60S ribosomal protein L35 OS=Caenorhabditis elegans GN=rpl-35 PE=3
SV=1
Length = 123
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 81/107 (75%), Gaps = 2/107 (1%)
Query: 308 KVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+KC LR + K L K+L+E KTELA LRV+KVTGGAASKLSKIRVVRK I R+ V++
Sbjct: 3 KLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTVIN 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKE 414
Q QK+ +R +H KYKP+DLR KKTRA+RRRLT HE L++ K+
Sbjct: 63 QTQKQELRKFY-ADH-KYKPIDLRLKKTRAIRRRLTAHELSLRSAKQ 107
>sp|O74904|RL35_SCHPO 60S ribosomal protein L35 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl35 PE=1 SV=1
Length = 122
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 82/117 (70%), Gaps = 2/117 (1%)
Query: 309 VKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQ 368
+K ELR + ++ L +QL+EL+ ELA+LRV K+ GG+ SKLSKI+ RK I R+ V+++
Sbjct: 3 LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINE 62
Query: 369 KQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
+ R + +KKY PLDLR KKTRA+RR LT +E+ KTLK+I++ + FP RK
Sbjct: 63 SNRLAAREAYK--NKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKKERYFPLRK 117
>sp|Q54J23|RL35_DICDI 60S ribosomal protein L35 OS=Dictyostelium discoideum GN=rpl35 PE=3
SV=1
Length = 126
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 78/117 (66%)
Query: 308 KVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K K ELRTK+K +LL+ L+EL+TEL++LRVA+V SKL+KI VRKAI RV V +
Sbjct: 4 KTKAFELRTKNKTQLLEHLKELRTELSSLRVAQVKSPNPSKLAKIGTVRKAIARVLTVFN 63
Query: 368 QKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPR 424
Q QK ++R + K+ P DLR KKTRA+RRRLT + K+ TL+ + FP R
Sbjct: 64 QTQKNHLRAVYSKKSSSKIPTDLRYKKTRAIRRRLTNKQSKVVTLRVSKTATNFPQR 120
>sp|P52817|RL35_BABBO 60S ribosomal protein L35 OS=Babesia bovis GN=RPL35 PE=2 SV=1
Length = 123
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 81/120 (67%), Gaps = 6/120 (5%)
Query: 308 KVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+K ELR K ELLKQLE+LK E A++RV KVT + SKLS+I V+RKAI +V V +
Sbjct: 3 KIKVYELRNKTDAELLKQLEDLKQEYASMRVQKVTVTSTSKLSQIGVIRKAIAKVLTVYN 62
Query: 368 QKQKENMRNLIRKEHKKYK--PLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
Q+++E RK++ K PL++RPK TRA RR LT + LKT+K+ ++ + FP RK
Sbjct: 63 QRKREEA----RKQYTKISEMPLNMRPKLTRAKRRALTPKQLHLKTIKQRKKCENFPKRK 118
>sp|Q8L805|RL35_WHEAT 60S ribosomal protein L35 OS=Triticum aestivum GN=RPL35 PE=1 SV=1
Length = 124
Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 80/121 (66%), Gaps = 5/121 (4%)
Query: 306 SVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIV 365
S KVK EL K K +L KQL ELKTEL LR+ KV + SKL++I +RK+I RV V
Sbjct: 3 SGKVKAGELWNKSKDDLTKQLAELKTELGQLRIQKV-ASSGSKLNRIHDIRKSIARVLTV 61
Query: 366 MHQKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQA-FPPR 424
++ KQ+ +R + +KKY PLDLR K+TRA+RRRL+ E K + L++ ++R FP R
Sbjct: 62 INAKQRAQLRLFYK--NKKYAPLDLRAKQTRAIRRRLSPDE-KSRVLEKTKKRTVHFPQR 118
Query: 425 K 425
K
Sbjct: 119 K 119
>sp|P0DJ51|RL35_TETTS 60S ribosomal protein L35 OS=Tetrahymena thermophila (strain SB210)
GN=RPL35 PE=1 SV=1
Length = 124
Score = 87.4 bits (215), Expect = 2e-16, Method: Composition-based stats.
Identities = 47/117 (40%), Positives = 83/117 (70%), Gaps = 2/117 (1%)
Query: 309 VKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQ 368
V+ +LRT+ +++L+ +L +L+TEL+ LR+AK+ GG A+KL +I +VRKAI + ++++
Sbjct: 5 VRVFKLRTQTEEQLVGELGKLQTELSQLRIAKIAGGTANKLGRIGIVRKAIAKYLTIINE 64
Query: 369 KQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
K+++ +++ + K KPLD+R KKTRA+RR+LTK +R+ +K ++ F RK
Sbjct: 65 KRRQAVKDQFKG--KSLKPLDIRVKKTRAIRRKLTKKQREAVLVKTQKKLNNFGLRK 119
>sp|P0CX85|RL35B_YEAST 60S ribosomal protein L35-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL35B PE=1 SV=1
Length = 120
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 79/117 (67%), Gaps = 5/117 (4%)
Query: 309 VKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQ 368
VK ELRTK K++L QL +LK ELA L+V K++ + L KI+ VRK+I V V+++
Sbjct: 4 VKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRPS---LPKIKTVRKSIACVLTVINE 60
Query: 369 KQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
+Q+E +R L + KKY+P DLR KKTRALRR LTK E T K+ +++ AFP RK
Sbjct: 61 QQREAVRQLYK--GKKYQPKDLRAKKTRALRRALTKFEASQVTEKQRKKQIAFPQRK 115
>sp|P0CX84|RL35A_YEAST 60S ribosomal protein L35-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL35A PE=1 SV=1
Length = 120
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 79/117 (67%), Gaps = 5/117 (4%)
Query: 309 VKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQ 368
VK ELRTK K++L QL +LK ELA L+V K++ + L KI+ VRK+I V V+++
Sbjct: 4 VKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRPS---LPKIKTVRKSIACVLTVINE 60
Query: 369 KQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
+Q+E +R L + KKY+P DLR KKTRALRR LTK E T K+ +++ AFP RK
Sbjct: 61 QQREAVRQLYK--GKKYQPKDLRAKKTRALRRALTKFEASQVTEKQRKKQIAFPQRK 115
>sp|Q4UIF8|RL35_THEAN 60S ribosomal protein L35 OS=Theileria annulata GN=RPL35 PE=3 SV=1
Length = 142
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 80/127 (62%), Gaps = 12/127 (9%)
Query: 304 SISVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVY 363
+ + K++ ELR K ELLK L++LK ELA RV+KVT SKLSKI +VRKA+ +V
Sbjct: 18 NFTEKLRVFELRDKSDAELLKLLDDLKQELATFRVSKVTATGTSKLSKITLVRKAVAKVL 77
Query: 364 IVMHQKQKENMRNLIRKEHKKYK-----PLDLRPKKTRALRRRLTKHERKLKTLKEIRRR 418
V +Q++KE R KKYK PL+LRPK TRA R+ LT + +KT+KE +R
Sbjct: 78 TVYNQRKKEEAR-------KKYKKLSKTPLNLRPKLTRAKRKGLTTKQLTMKTIKERKRA 130
Query: 419 QAFPPRK 425
+ P RK
Sbjct: 131 ENLPKRK 137
>sp|Q2VA69|RL36_THELE 60S ribosomal protein L35 OS=Theileria lestoquardi GN=RPL35 PE=2
SV=1
Length = 123
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 78/123 (63%), Gaps = 12/123 (9%)
Query: 308 KVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K++ ELR K ELLK L++LK ELA RV+KVT SKLSKI +VRKA+ +V V +
Sbjct: 3 KLRVFELRDKSDAELLKLLDDLKQELATFRVSKVTATGTSKLSKITLVRKAVAKVLTVYN 62
Query: 368 QKQKENMRNLIRKEHKKYK-----PLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFP 422
Q++KE R KKYK PL+LRPK TRA R+ LT + +KT+KE +R + P
Sbjct: 63 QRKKEEAR-------KKYKKLSKTPLNLRPKLTRAKRKALTTKQLTMKTIKERKRAENLP 115
Query: 423 PRK 425
RK
Sbjct: 116 KRK 118
>sp|Q4N756|RL35_THEPA 60S ribosomal protein L35 OS=Theileria parva GN=RPL35 PE=3 SV=1
Length = 123
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 78/123 (63%), Gaps = 12/123 (9%)
Query: 308 KVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K++ ELR K ELLK L++LK ELA RV+KVT SKLSKI +VRKA+ +V V +
Sbjct: 3 KLRVFELREKSDAELLKLLDDLKQELATFRVSKVTATGTSKLSKITLVRKAVAKVLTVYN 62
Query: 368 QKQKENMRNLIRKEHKKYK-----PLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFP 422
Q++KE R KKYK PL+LRPK TRA R+ LT + +KT+KE +R + P
Sbjct: 63 QRKKEEAR-------KKYKKLSKTPLNLRPKLTRAKRKALTTKQLTMKTIKERKRAENLP 115
Query: 423 PRK 425
RK
Sbjct: 116 KRK 118
>sp|B1MGE2|RL29_MYCA9 50S ribosomal protein L29 OS=Mycobacterium abscessus (strain ATCC
19977 / DSM 44196) GN=rpmC PE=3 SV=1
Length = 78
Score = 46.2 bits (108), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 305 ISVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYI 364
++V + ELR ++EL+ +L E K EL NLR TG A+ ++R VR+ I R+Y
Sbjct: 1 MTVGISAGELRESTEEELITKLRESKEELFNLRFQMATGQLANN-RRLRAVRQEIARIYT 59
Query: 365 VMHQKQ 370
VM +++
Sbjct: 60 VMRERE 65
>sp|Q9L0D2|RL29_STRCO 50S ribosomal protein L29 OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=rpmC PE=3 SV=1
Length = 74
Score = 45.8 bits (107), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 305 ISVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYI 364
+S K SELR +ELL +L E K EL NLR TG + +++ VRK I R+Y
Sbjct: 1 MSAGTKASELRELGNEELLAKLREAKEELFNLRFQAATGQLENH-GRLKAVRKDIARIYT 59
Query: 365 VMHQKQ 370
+M +++
Sbjct: 60 LMRERE 65
>sp|Q82DN7|RL29_STRAW 50S ribosomal protein L29 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=rpmC PE=3 SV=1
Length = 74
Score = 45.8 bits (107), Expect = 0.001, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 305 ISVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYI 364
+S K SELR +ELL +L E K EL NLR TG + +++ VRK I R+Y
Sbjct: 1 MSAGTKASELRELGDEELLAKLREAKEELFNLRFQAATGQLENH-GRLKAVRKDIARIYT 59
Query: 365 VMHQKQ 370
+M +++
Sbjct: 60 LMRERE 65
>sp|B1W3Z9|RL29_STRGG 50S ribosomal protein L29 OS=Streptomyces griseus subsp. griseus
(strain JCM 4626 / NBRC 13350) GN=rpmC PE=3 SV=1
Length = 74
Score = 45.1 bits (105), Expect = 0.001, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 305 ISVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYI 364
+S K SELR +ELL +L E K EL NLR TG + +++ VRK I R+Y
Sbjct: 1 MSAGTKASELRELGDEELLNKLREAKEELFNLRFQAATGQLENH-GRLKSVRKDIARIYT 59
Query: 365 VMHQKQ 370
+M +++
Sbjct: 60 LMRERE 65
>sp|A4TEB6|RL29_MYCGI 50S ribosomal protein L29 OS=Mycobacterium gilvum (strain PYR-GCK)
GN=rpmC PE=3 SV=1
Length = 77
Score = 43.9 bits (102), Expect = 0.003, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 305 ISVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYI 364
++V ELR EL +L E K EL NLR TG A+ ++RVVR+ I RVY
Sbjct: 1 MAVGTTTGELRELSDDELTDKLRESKEELFNLRFQMATGQLANN-RRLRVVRQEIARVYT 59
Query: 365 VMHQKQ 370
V+ +++
Sbjct: 60 VLRERE 65
>sp|Q1BD99|RL29_MYCSS 50S ribosomal protein L29 OS=Mycobacterium sp. (strain MCS) GN=rpmC
PE=3 SV=1
Length = 77
Score = 43.5 bits (101), Expect = 0.004, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 305 ISVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYI 364
++V V ELR EL+++L E K EL NLR TG ++ ++RVVR+ I RVY
Sbjct: 1 MAVGVSPGELRELSDDELIERLRESKEELFNLRFQMATGQLSNN-RRLRVVRQEIARVYT 59
Query: 365 VMHQKQ 370
V+ +++
Sbjct: 60 VLRERE 65
>sp|A1UBP4|RL29_MYCSK 50S ribosomal protein L29 OS=Mycobacterium sp. (strain KMS) GN=rpmC
PE=3 SV=1
Length = 77
Score = 43.5 bits (101), Expect = 0.004, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 305 ISVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYI 364
++V V ELR EL+++L E K EL NLR TG ++ ++RVVR+ I RVY
Sbjct: 1 MAVGVSPGELRELSDDELIERLRESKEELFNLRFQMATGQLSNN-RRLRVVRQEIARVYT 59
Query: 365 VMHQKQ 370
V+ +++
Sbjct: 60 VLRERE 65
>sp|A3PVC9|RL29_MYCSJ 50S ribosomal protein L29 OS=Mycobacterium sp. (strain JLS) GN=rpmC
PE=3 SV=1
Length = 77
Score = 43.5 bits (101), Expect = 0.004, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 305 ISVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYI 364
++V V ELR EL+++L E K EL NLR TG ++ ++RVVR+ I RVY
Sbjct: 1 MAVGVSPGELRELSDDELIERLRESKEELFNLRFQMATGQLSNN-RRLRVVRQEIARVYT 59
Query: 365 VMHQKQ 370
V+ +++
Sbjct: 60 VLRERE 65
>sp|A1T4P7|RL29_MYCVP 50S ribosomal protein L29 OS=Mycobacterium vanbaalenii (strain DSM
7251 / PYR-1) GN=rpmC PE=3 SV=1
Length = 77
Score = 42.7 bits (99), Expect = 0.007, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 305 ISVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYI 364
++V ELR +EL +L E K EL NLR TG A+ ++RVVR+ I R+Y
Sbjct: 1 MAVGTTTGELRELTDEELTDKLRESKEELFNLRFQMATGQLANN-RRLRVVRQEIARLYT 59
Query: 365 VMHQKQ 370
V+ +++
Sbjct: 60 VLRERE 65
>sp|Q0RRR3|RL29_FRAAA 50S ribosomal protein L29 OS=Frankia alni (strain ACN14a) GN=rpmC
PE=3 SV=1
Length = 89
Score = 42.0 bits (97), Expect = 0.013, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 313 ELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQ 370
ELR+ EL+ +L E K EL NLR TG ++ ++R VR+ I ++Y VM +++
Sbjct: 9 ELRSLSGDELVDKLREAKEELFNLRFQAATGQLSNN-RRLRAVRRDIAKIYTVMRERE 65
>sp|A6VGZ1|RL29_METM7 50S ribosomal protein L29P OS=Methanococcus maripaludis (strain C7
/ ATCC BAA-1331) GN=rpl29p PE=3 SV=1
Length = 71
Score = 41.6 bits (96), Expect = 0.015, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 309 VKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQ 368
+K SE+R +E+ ++ ELK EL V K TGGA S KI +++ I R+ +M++
Sbjct: 4 LKASEIRELSAEEMKGKIAELKRELMKEGVNKSTGGAPSNPGKISEIKRTIARILTIMNE 63
Query: 369 KQKE 372
K+ +
Sbjct: 64 KEAQ 67
>sp|A4FWB5|RL29_METM5 50S ribosomal protein L29P OS=Methanococcus maripaludis (strain C5
/ ATCC BAA-1333) GN=rpl29p PE=3 SV=1
Length = 71
Score = 41.6 bits (96), Expect = 0.015, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 309 VKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQ 368
+K SE+R +E+ ++ ELK EL V K TGGA S KI +++ I R+ +M++
Sbjct: 4 LKASEIRELSAEEMKGKIAELKRELMKEGVNKSTGGAPSNPGKISEIKRTIARILTIMNE 63
Query: 369 KQKE 372
K+ +
Sbjct: 64 KEAQ 67
>sp|O32989|RL29_MYCLE 50S ribosomal protein L29 OS=Mycobacterium leprae (strain TN)
GN=rpmC PE=3 SV=1
Length = 80
Score = 41.2 bits (95), Expect = 0.019, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 305 ISVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYI 364
++V + ELR +EL+++L E K EL NLR TG + ++R VR I RVY
Sbjct: 1 MAVGISPGELRELTDEELIERLRESKEELFNLRFQMATGQLNNN-RRLRTVRHEIARVYT 59
Query: 365 VMHQKQ 370
V+ +++
Sbjct: 60 VLRERE 65
>sp|Q47LK1|RL29_THEFY 50S ribosomal protein L29 OS=Thermobifida fusca (strain YX) GN=rpmC
PE=3 SV=1
Length = 85
Score = 41.2 bits (95), Expect = 0.020, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 312 SELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQ 370
+ELR KEL ++L+E K EL NLR TG + S++R+V++ I R+Y V+ + +
Sbjct: 8 AELRGYSVKELTEKLKEAKEELFNLRFQAATGQLDNN-SRLRIVKREIARIYTVLREHE 65
>sp|Q6A6N4|RL29_PROAC 50S ribosomal protein L29 OS=Propionibacterium acnes (strain
KPA171202 / DSM 16379) GN=rpmC PE=3 SV=1
Length = 77
Score = 40.8 bits (94), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 308 KVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+ +ELR +EL ++ ELK EL LR T G +++R VRK I RVY V+
Sbjct: 3 KLSAAELRQLSGEELRNKVRELKEELFGLRFQSAT-GQLENTARLREVRKDIARVYTVLQ 61
Query: 368 QK 369
++
Sbjct: 62 ER 63
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,274,528
Number of Sequences: 539616
Number of extensions: 8541268
Number of successful extensions: 35314
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 515
Number of HSP's that attempted gapping in prelim test: 34790
Number of HSP's gapped (non-prelim): 876
length of query: 536
length of database: 191,569,459
effective HSP length: 122
effective length of query: 414
effective length of database: 125,736,307
effective search space: 52054831098
effective search space used: 52054831098
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)