Query psy8363
Match_columns 536
No_of_seqs 316 out of 1128
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 16:46:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8363.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8363hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_U RPL35, 60S ribosomal pr 100.0 1.1E-46 3.7E-51 338.0 11.8 123 305-429 1-123 (124)
2 3u5e_h 60S ribosomal protein L 100.0 6.2E-45 2.1E-49 325.1 10.9 119 306-429 1-119 (120)
3 2zkr_v 60S ribosomal protein L 100.0 2.6E-45 8.9E-50 328.7 7.2 122 306-429 1-122 (123)
4 3iz5_c 60S ribosomal protein L 100.0 1.6E-45 5.4E-50 330.5 3.2 120 307-429 4-123 (124)
5 1vq8_V 50S ribosomal protein L 99.8 9.2E-22 3.1E-26 161.4 6.6 68 306-373 1-68 (71)
6 3j21_W 50S ribosomal protein L 99.8 4.9E-21 1.7E-25 157.6 9.5 71 309-379 1-71 (72)
7 3jyw_X 60S ribosomal protein L 99.8 1.5E-22 5.3E-27 171.7 -0.0 70 307-379 1-70 (86)
8 3v2d_2 50S ribosomal protein L 99.8 1.3E-20 4.6E-25 155.0 6.9 65 307-372 6-70 (72)
9 1r73_A TM1492, 50S ribosomal p 99.8 1.2E-20 4.1E-25 152.8 6.4 63 309-372 1-63 (66)
10 2zjr_V 50S ribosomal protein L 99.8 2.2E-20 7.5E-25 151.7 6.3 63 309-372 1-63 (67)
11 3r8s_Y 50S ribosomal protein L 99.8 2.1E-20 7.3E-25 150.1 4.2 61 309-370 1-61 (63)
12 3bbo_Z Ribosomal protein L29; 99.8 2.3E-20 7.8E-25 174.8 4.6 81 294-375 48-130 (173)
13 2day_A Ring finger protein 25; 79.5 5.1 0.00017 34.4 7.2 62 231-296 63-125 (128)
14 2yz0_A Serine/threonine-protei 74.9 5.8 0.0002 34.6 6.4 64 231-295 66-133 (138)
15 1ukx_A GCN2, GCN2 EIF2alpha ki 73.7 13 0.00046 32.1 8.3 55 231-286 67-126 (137)
16 2ebm_A RWD domain-containing p 70.4 6.8 0.00023 33.6 5.6 59 231-289 59-121 (128)
17 2ebk_A RWD domain-containing p 66.3 11 0.00038 32.4 6.1 19 231-249 60-78 (128)
18 2dax_A Protein C21ORF6; RWD do 66.2 3.2 0.00011 37.1 2.8 59 231-289 77-139 (152)
19 2ebk_A RWD domain-containing p 59.8 15 0.00052 31.6 5.8 19 490-508 60-78 (128)
20 2daw_A RWD domain containing p 57.0 26 0.00088 31.5 7.0 57 231-288 79-140 (154)
21 3twe_A Alpha4H; unknown functi 56.5 11 0.00036 25.3 3.2 23 319-341 3-25 (27)
22 2day_A Ring finger protein 25; 48.3 23 0.00079 30.2 5.0 17 490-506 63-79 (128)
23 1ukx_A GCN2, GCN2 EIF2alpha ki 46.7 27 0.00093 30.1 5.3 38 490-527 67-105 (137)
24 1vf6_A PALS-1, PALS1-associate 43.6 3.3 0.00011 35.0 -1.0 35 113-147 7-42 (83)
25 3obq_A Tumor susceptibility ge 41.7 9.7 0.00033 34.8 1.6 60 183-247 20-89 (146)
26 2awf_A Ubiquitin-conjugating e 40.3 41 0.0014 30.9 5.7 19 231-249 69-87 (172)
27 3r3q_A Suppressor protein STP2 38.7 11 0.00039 34.9 1.6 65 185-249 30-103 (162)
28 2yz0_A Serine/threonine-protei 37.1 58 0.002 28.1 5.9 39 490-528 66-105 (138)
29 2ebm_A RWD domain-containing p 35.2 22 0.00076 30.3 2.9 18 490-507 59-76 (128)
30 1y8x_A Ubiquitin-conjugating e 34.1 38 0.0013 30.7 4.3 59 445-505 9-70 (160)
31 3o2u_A NEDD8-conjugating enzym 33.9 65 0.0022 30.1 6.0 19 231-249 84-102 (190)
32 1c4z_D UBCH7, ubiquitin conjug 29.8 58 0.002 29.0 4.8 16 490-505 53-68 (154)
33 2nvu_C NEDD8-conjugating enzym 29.7 40 0.0014 31.3 3.8 60 445-506 29-91 (180)
34 1y8x_A Ubiquitin-conjugating e 29.3 63 0.0021 29.3 4.9 61 186-249 9-73 (160)
35 2dax_A Protein C21ORF6; RWD do 28.0 44 0.0015 29.6 3.6 18 490-507 77-94 (152)
36 3s9g_A Protein hexim1; cyclin 27.7 1.9E+02 0.0066 25.2 7.3 53 309-364 22-79 (104)
37 3obq_A Tumor susceptibility ge 27.6 18 0.00062 33.0 1.0 57 444-505 22-88 (146)
38 3r3q_A Suppressor protein STP2 27.6 18 0.00062 33.5 1.0 49 458-506 47-101 (162)
39 2z6o_A UFM1-conjugating enzyme 25.8 33 0.0011 32.4 2.5 20 230-249 86-105 (172)
40 2oa5_A Hypothetical protein BQ 25.6 42 0.0014 29.7 2.9 27 316-342 7-33 (110)
41 2nvu_C NEDD8-conjugating enzym 24.8 68 0.0023 29.7 4.4 61 186-249 29-93 (180)
42 3hnw_A Uncharacterized protein 24.5 1.8E+02 0.0063 26.0 7.0 96 254-372 26-125 (138)
43 2daw_A RWD domain containing p 23.9 50 0.0017 29.6 3.2 17 490-506 79-95 (154)
44 2r2v_A GCN4 leucine zipper; co 23.6 55 0.0019 23.5 2.6 27 310-337 2-28 (34)
45 4dac_A Computationally designe 23.1 23 0.0008 23.9 0.6 9 446-454 19-27 (28)
46 3sja_C Golgi to ER traffic pro 23.0 2.9E+02 0.01 22.2 7.1 49 322-370 4-52 (65)
47 2fo3_A Ubiquitin-conjugating e 21.4 39 0.0013 29.3 1.9 19 231-249 57-75 (125)
48 2z6o_A UFM1-conjugating enzyme 21.3 21 0.0007 33.8 0.1 30 477-506 74-103 (172)
49 2fo3_A Ubiquitin-conjugating e 21.2 43 0.0015 29.0 2.1 17 490-506 57-73 (125)
50 2h2y_A Ubiquitin-conjugating e 21.2 39 0.0013 29.8 1.9 19 231-249 71-89 (136)
51 2a7l_A Hypothetical ubiquitin- 21.1 38 0.0013 30.1 1.8 17 490-506 75-91 (136)
52 2a7l_A Hypothetical ubiquitin- 21.1 38 0.0013 30.1 1.8 19 231-249 75-93 (136)
53 2e2c_A Ubiquitin conjugating e 20.9 47 0.0016 29.8 2.4 83 231-330 60-149 (156)
54 2r0j_A Ubiquitin carrier prote 20.8 48 0.0016 29.5 2.4 20 230-249 51-70 (149)
55 2ucz_A UBC7, ubiquitin conjuga 20.8 49 0.0017 29.9 2.5 19 231-249 56-74 (165)
56 1z2u_A Ubiquitin-conjugating e 20.8 48 0.0016 29.5 2.4 20 230-249 54-73 (150)
57 2h2y_A Ubiquitin-conjugating e 20.6 45 0.0015 29.4 2.2 17 490-506 71-87 (136)
58 1jat_A Ubiquitin-conjugating e 20.6 48 0.0016 29.7 2.4 20 230-249 55-74 (155)
59 1fxt_A Ubiquitin-conjugating e 20.5 49 0.0017 29.4 2.4 20 230-249 52-71 (149)
60 1jat_B Ubiquitin-conjugating e 20.4 51 0.0018 29.0 2.5 19 231-249 61-79 (138)
61 2bep_A Ubiquitin-conjugating e 20.3 49 0.0017 29.8 2.4 20 230-249 61-80 (159)
62 2r0j_A Ubiquitin carrier prote 20.3 45 0.0015 29.7 2.1 16 490-505 52-67 (149)
63 1jat_A Ubiquitin-conjugating e 20.2 45 0.0015 29.9 2.1 16 490-505 56-71 (155)
64 2ucz_A UBC7, ubiquitin conjuga 20.1 46 0.0016 30.1 2.2 16 490-505 56-71 (165)
No 1
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=100.00 E-value=1.1e-46 Score=338.03 Aligned_cols=123 Identities=38% Similarity=0.619 Sum_probs=119.5
Q ss_pred ccccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHhhhHHHHHHHHhHHHHHHHHHHHHhccCc
Q psy8363 305 ISVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKENMRNLIRKEHKK 384 (536)
Q Consensus 305 ~m~kmKa~ELR~kS~eEL~kqL~eLK~EL~~LR~qkvtG~al~k~skIr~vRK~IARVlTVlnqkqr~~lr~~yk~k~kk 384 (536)
||++||+.|||++|.+||.++|.||+.|||+||||++|||.++|+++|+.|||+||||+||++|+++++||+||+ |||
T Consensus 1 M~~~mKa~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atggqlen~~rIr~vRRdIARi~Tvl~er~~~~lr~~yk--~kk 78 (124)
T 4a17_U 1 MDKSVRVFKLRTQTEEQLVGELGKLQTELSQLRIAKIAGGTANKLGRIGIVRKAIAKYLTIINEKRRQAVKDQFK--GKS 78 (124)
T ss_dssp -CCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCS
T ss_pred CCcccCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCC
Confidence 789999999999999999999999999999999999999669999999999999999999999999999999996 999
Q ss_pred cCCCCCCchhhHHHHhhcChhHHhhhhHHHHHHhhcCCCCcccCC
Q psy8363 385 YKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRKDLPL 429 (536)
Q Consensus 385 ~~PlDLRpKkTRA~Rr~Ltk~e~~~kt~kq~kk~~~fp~rk~~p~ 429 (536)
|+|+||||||||||||+||+||++++|.||+||+.+||.|+|++.
T Consensus 79 ~~P~dlr~kktra~rr~Lt~~e~~~kt~k~~~k~~~fp~rk~avk 123 (124)
T 4a17_U 79 LKPLDIRVKKTRAIRRKLTKKQREAVLVKTQKKLNNFGLRKFALK 123 (124)
T ss_dssp SCCTTTSCCSCHHHHHSCCHHHHHCCCHHHHHHHHHTCCCCCCCC
T ss_pred CCCcccCchHHHHHHHHcCHHHHhhhhHHHHHHHHhCCchheeec
Confidence 999999999999999999999999999999999999999999875
No 2
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=100.00 E-value=6.2e-45 Score=325.12 Aligned_cols=119 Identities=49% Similarity=0.639 Sum_probs=115.7
Q ss_pred cccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHhhhHHHHHHHHhHHHHHHHHHHHHhccCcc
Q psy8363 306 SVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKENMRNLIRKEHKKY 385 (536)
Q Consensus 306 m~kmKa~ELR~kS~eEL~kqL~eLK~EL~~LR~qkvtG~al~k~skIr~vRK~IARVlTVlnqkqr~~lr~~yk~k~kk~ 385 (536)
|++||+.|||++|.+||.++|.||+.|||+||||++||+ + +++|+.|||+||||+||++|++++++|+||+ ||||
T Consensus 1 Ma~mK~~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atgq-l--~~~Ir~vRR~IARi~Tvl~er~~~~lr~~yk--~kk~ 75 (120)
T 3u5e_h 1 MAGVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRP-S--LPKIKTVRKSIACVLTVINEQQREAVRQLYK--GKKY 75 (120)
T ss_dssp -CCCCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTSS-C--CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SSSC
T ss_pred CCcCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC-c--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCC
Confidence 789999999999999999999999999999999999999 5 9999999999999999999999999999995 9999
Q ss_pred CCCCCCchhhHHHHhhcChhHHhhhhHHHHHHhhcCCCCcccCC
Q psy8363 386 KPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRKDLPL 429 (536)
Q Consensus 386 ~PlDLRpKkTRA~Rr~Ltk~e~~~kt~kq~kk~~~fp~rk~~p~ 429 (536)
+|+||||||||||||+||+||++++|.||++|+.+||.|+|++.
T Consensus 76 ~p~dlr~kktra~rr~Lt~~~~~~kt~k~~~k~~~~p~r~~avk 119 (120)
T 3u5e_h 76 QPKDLRAKKTRALRRALTKFEASQVTEKQRKKQIAFPQRKYAIK 119 (120)
T ss_dssp CCTTTSCCSCHHHHSSCCSHHHHCCCHHHHHHHHHSCCCCEEEC
T ss_pred CCcccCchHHHHHHHHcCHHHHhhhhHHHHHHHHhCCchheeec
Confidence 99999999999999999999999999999999999999999865
No 3
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.6e-45 Score=328.75 Aligned_cols=122 Identities=64% Similarity=0.891 Sum_probs=60.0
Q ss_pred cccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHhhhHHHHHHHHhHHHHHHHHHHHHhccCcc
Q psy8363 306 SVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKENMRNLIRKEHKKY 385 (536)
Q Consensus 306 m~kmKa~ELR~kS~eEL~kqL~eLK~EL~~LR~qkvtG~al~k~skIr~vRK~IARVlTVlnqkqr~~lr~~yk~k~kk~ 385 (536)
|++||+.|||++|.+||.++|.||+.|||+||||++|||.++|+++|+.|||+||||+||++|++++++|+||+ |+||
T Consensus 1 Ma~mK~~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atgq~len~~rir~vRrdIARI~Tvl~er~~~~lr~~yk--~kk~ 78 (123)
T 2zkr_v 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYK--GKKY 78 (123)
T ss_dssp ---CCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred CCCCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCC
Confidence 67899999999999999999999999999999999999768999999999999999999999999999999996 9999
Q ss_pred CCCCCCchhhHHHHhhcChhHHhhhhHHHHHHhhcCCCCcccCC
Q psy8363 386 KPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRKDLPL 429 (536)
Q Consensus 386 ~PlDLRpKkTRA~Rr~Ltk~e~~~kt~kq~kk~~~fp~rk~~p~ 429 (536)
+|+||||||||||||+||+||++++|.||++|+.+||.|+|++.
T Consensus 79 ~p~dlr~k~tra~rr~Lt~~~~~~kt~k~~~k~~~~p~rk~a~k 122 (123)
T 2zkr_v 79 KPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVK 122 (123)
T ss_dssp --------------------------------------------
T ss_pred CCcccchHHHHHHHHHcCHHHHhhccHHHHHHHHhCchhhhhcc
Confidence 99999999999999999999999999999999999999999874
No 4
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=100.00 E-value=1.6e-45 Score=330.48 Aligned_cols=120 Identities=48% Similarity=0.649 Sum_probs=117.5
Q ss_pred ccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHhhhHHHHHHHHhHHHHHHHHHHHHhccCccC
Q psy8363 307 VKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKENMRNLIRKEHKKYK 386 (536)
Q Consensus 307 ~kmKa~ELR~kS~eEL~kqL~eLK~EL~~LR~qkvtG~al~k~skIr~vRK~IARVlTVlnqkqr~~lr~~yk~k~kk~~ 386 (536)
++||+.|||++|.+||.++|.||+.|||+||||++||+ ++|+++|+.|||+||||+|||+|+++++||+||+ ||||+
T Consensus 4 ~~mKa~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atgq-len~~rIr~vRRdIARi~Tvl~er~~~~lr~~yk--~kk~~ 80 (124)
T 3iz5_c 4 GKVKAGELWNKSKDDLTKQLAELKTELGQLRIQKVASS-GSKLNRIHDIRKSIARVLTVINAKQRAQLRLFYK--NKKYA 80 (124)
T ss_dssp CCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSCCC
T ss_pred ccCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCC
Confidence 68999999999999999999999999999999999998 8999999999999999999999999999999995 99999
Q ss_pred CCCCCchhhHHHHhhcChhHHhhhhHHHHHHhhcCCCCcccCC
Q psy8363 387 PLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRKDLPL 429 (536)
Q Consensus 387 PlDLRpKkTRA~Rr~Ltk~e~~~kt~kq~kk~~~fp~rk~~p~ 429 (536)
|+||||||||||||+||+||++++|.||+||+.+||.|+|++.
T Consensus 81 P~dlr~kktra~rr~Lt~~e~~~kt~k~~~k~~~~p~rk~avk 123 (124)
T 3iz5_c 81 PLDLRAKQTRAIRRRLSPDEKSRVLEKTKKRTVHFPQRKFAIK 123 (124)
T ss_dssp SSHHHHHHCSHHHHHTCSCCHHHHTCSSSCSSCSCCCSHHHHC
T ss_pred CcccCchHHHHHHHHcCHHHHhhhhHHHHHHHHhCCchheeec
Confidence 9999999999999999999999999999999999999999864
No 5
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=99.85 E-value=9.2e-22 Score=161.45 Aligned_cols=68 Identities=29% Similarity=0.427 Sum_probs=62.6
Q ss_pred cccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHhhhHHHHHHHHhHHHHHH
Q psy8363 306 SVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKEN 373 (536)
Q Consensus 306 m~kmKa~ELR~kS~eEL~kqL~eLK~EL~~LR~qkvtG~al~k~skIr~vRK~IARVlTVlnqkqr~~ 373 (536)
|++||++|||++|.+||.++|.+||+|||+||||++|||.++|+++|+.|||+||||+||++|+++++
T Consensus 1 Ma~mk~~elr~~s~~EL~~~l~elk~ELf~LR~q~atggql~n~~~ir~vRr~IARi~Tvl~er~~~~ 68 (71)
T 1vq8_V 1 MTVLHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGEEGDLQ 68 (71)
T ss_dssp -CCSCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68899999999999999999999999999999999996559999999999999999999999998654
No 6
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.84 E-value=4.9e-21 Score=157.55 Aligned_cols=71 Identities=25% Similarity=0.351 Sum_probs=68.3
Q ss_pred ccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHhhhHHHHHHHHhHHHHHHHHHHHH
Q psy8363 309 VKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKENMRNLIR 379 (536)
Q Consensus 309 mKa~ELR~kS~eEL~kqL~eLK~EL~~LR~qkvtG~al~k~skIr~vRK~IARVlTVlnqkqr~~lr~~yk 379 (536)
||+.|||++|.+||.++|.+|++|||+||||++||++++|+++|+.+||+||||+||++|++.+..+...+
T Consensus 1 MK~~elr~~s~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~er~~~~~~~~~~ 71 (72)
T 3j21_W 1 MKPSEIREMSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKEKLREREKGKVK 71 (72)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 78999999999999999999999999999999999988999999999999999999999999999888764
No 7
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.84 E-value=1.5e-22 Score=171.67 Aligned_cols=70 Identities=41% Similarity=0.527 Sum_probs=68.1
Q ss_pred ccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHhhhHHHHHHHHhHHHHHHHHHHHH
Q psy8363 307 VKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKENMRNLIR 379 (536)
Q Consensus 307 ~kmKa~ELR~kS~eEL~kqL~eLK~EL~~LR~qkvtG~al~k~skIr~vRK~IARVlTVlnqkqr~~lr~~yk 379 (536)
++||++|||+||.+||.++|.|||+|||+||||++||+ + +++|+.+||+||||+||++|++++++|++|+
T Consensus 1 ~~MKa~ELR~~S~eEL~~~L~eLK~ELf~LRfq~atgq-l--p~rIr~vRRdIARikTvl~er~~~~lr~~y~ 70 (86)
T 3jyw_X 1 AGVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRP-S--LPKIKTVRKSIACVLTVINEQQAAAAAAAAA 70 (86)
T ss_dssp CCSCHHHHHTSCHHHHHHHHHHHTTTHHHHHHHHHTCC-C--HHHHTCCSTTTHHHHTTTTHHHHHHHSSCCC
T ss_pred CCCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC-C--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999 5 9999999999999999999999999999996
No 8
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=99.81 E-value=1.3e-20 Score=154.97 Aligned_cols=65 Identities=32% Similarity=0.428 Sum_probs=62.2
Q ss_pred ccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHhhhHHHHHHHHhHHHHH
Q psy8363 307 VKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKE 372 (536)
Q Consensus 307 ~kmKa~ELR~kS~eEL~kqL~eLK~EL~~LR~qkvtG~al~k~skIr~vRK~IARVlTVlnqkqr~ 372 (536)
+.||++|||++|.+||.++|.+|++|||+||||++||+ ++|+++|+.+||+||||+||++|++++
T Consensus 6 ~~mK~~elr~~s~eEL~~~L~elk~ELf~LR~q~atgq-l~n~~~ir~vRr~IARi~Tvl~er~~~ 70 (72)
T 3v2d_2 6 VRKQLEEARKLSPVELEKLVREKKRELMELRFQASIGQ-LSQNHKIRDLKRQIARLLTVLNEKRRQ 70 (72)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45999999999999999999999999999999999999 799999999999999999999999864
No 9
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=99.81 E-value=1.2e-20 Score=152.78 Aligned_cols=63 Identities=30% Similarity=0.445 Sum_probs=60.8
Q ss_pred ccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHhhhHHHHHHHHhHHHHH
Q psy8363 309 VKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKE 372 (536)
Q Consensus 309 mKa~ELR~kS~eEL~kqL~eLK~EL~~LR~qkvtG~al~k~skIr~vRK~IARVlTVlnqkqr~ 372 (536)
||++|||++|.+||.++|.+|++|||+||||++||+ ++|+++|+.+||+||||+||++|++.+
T Consensus 1 MK~~elr~~s~~EL~~~l~elk~ELf~LR~q~atgq-l~n~~~ir~vRr~IARi~Tvl~er~~~ 63 (66)
T 1r73_A 1 MKASELRNYTDEELKNLLEEKKRQLMELRFQLAMGQ-LKNTSLIKLTKRDIARIKTILRERELG 63 (66)
T ss_dssp CCCSHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHccC-ccCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 789999999999999999999999999999999998 899999999999999999999999863
No 10
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=99.81 E-value=2.2e-20 Score=151.68 Aligned_cols=63 Identities=22% Similarity=0.404 Sum_probs=60.8
Q ss_pred ccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHhhhHHHHHHHHhHHHHH
Q psy8363 309 VKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKE 372 (536)
Q Consensus 309 mKa~ELR~kS~eEL~kqL~eLK~EL~~LR~qkvtG~al~k~skIr~vRK~IARVlTVlnqkqr~ 372 (536)
||++|||++|.+||.++|.+|++|||+|||+++||+ ++|+++|+.|||+||||+||++|++++
T Consensus 1 Mk~~elr~~s~~EL~~~l~elk~ELf~LR~q~atgq-l~n~~~ir~vRr~IARi~Tvl~er~~~ 63 (67)
T 2zjr_V 1 MKPSEMRNLQATDFAKEIDARKKELMELRFQAAAGQ-LAQPHRVRQLRREVAQLNTVKAELARK 63 (67)
T ss_dssp CCSTTTTTSCHHHHHHHHHTHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999998 899999999999999999999998764
No 11
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=99.79 E-value=2.1e-20 Score=150.09 Aligned_cols=61 Identities=31% Similarity=0.437 Sum_probs=59.4
Q ss_pred ccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHhhhHHHHHHHHhHHH
Q psy8363 309 VKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQ 370 (536)
Q Consensus 309 mKa~ELR~kS~eEL~kqL~eLK~EL~~LR~qkvtG~al~k~skIr~vRK~IARVlTVlnqkq 370 (536)
||++|||++|.+||.++|.+|++|||+||||+++|+ ++|+++|+.+||+||||+||++|++
T Consensus 1 MK~~elr~~s~~EL~~~l~elk~Elf~LR~q~atgq-l~n~~~ir~vRr~IARi~Tvl~er~ 61 (63)
T 3r8s_Y 1 MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQ-LQQSHLLKQVRRDVARVKTLLNEKA 61 (63)
T ss_dssp CCGGGTTSCHHHHHHHHHHHHTHHHHHHHHHHHTTC-CSCGGGTHHHHHHHHHHHHTTTSST
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCC-CcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 799999999999999999999999999999999998 8999999999999999999999975
No 12
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.79 E-value=2.3e-20 Score=174.81 Aligned_cols=81 Identities=25% Similarity=0.344 Sum_probs=62.1
Q ss_pred cCCCCCCCCCCcccc--ccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHhhhHHHHHHHHhHHHH
Q psy8363 294 APTRNPTSSPSISVK--VKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQK 371 (536)
Q Consensus 294 ~~~~~~~ap~t~m~k--mKa~ELR~kS~eEL~kqL~eLK~EL~~LR~qkvtG~al~k~skIr~vRK~IARVlTVlnqkqr 371 (536)
+.+++....+.||++ +|++|||+||.+||.++|.|||+|||+||||++||+ ++|+++||.+||+||||+||+||+++
T Consensus 48 ~~~~~~~~~~vmMAK~~~Ka~ELR~lS~eEL~ekL~eLKkELFnLRfQkATGQ-LeNpsrIR~VRRdIARIkTVLrErel 126 (173)
T 3bbo_Z 48 ISSSSPKPSVVMMSKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARN-EFKSSDFRRMKKQVARMLTVKREREI 126 (173)
T ss_dssp --------------CCSSCHHHHHHSCHHHHHHHHHHHTTHHHHHHHHHHHCC-CSCHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred ccCCccccchhccccccCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667899998 899999999999999999999999999999999999 89999999999999999999999987
Q ss_pred HHHH
Q psy8363 372 ENMR 375 (536)
Q Consensus 372 ~~lr 375 (536)
++.-
T Consensus 127 ~~~~ 130 (173)
T 3bbo_Z 127 KEGI 130 (173)
T ss_dssp ----
T ss_pred Hhcc
Confidence 6553
No 13
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=79.54 E-value=5.1 Score=34.42 Aligned_cols=62 Identities=11% Similarity=0.162 Sum_probs=34.2
Q ss_pred eEeecCCCCCCCCCccccCC-cCCCCchHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhcCC
Q psy8363 231 IQVSIPEDYPSHPPRCTMGH-EHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQACAPT 296 (536)
Q Consensus 231 l~v~vP~dYP~~sP~~~~~~-~y~~t~FL~~v~~~~~sRL~~lP~~~SvT~lL~tWe~SvrQac~~~ 296 (536)
|.|..|++||..+|...... ..-...-+..+.+.+........+.. ++=+|...++.+....
T Consensus 63 L~~~~p~~YP~~~P~i~~~~~~~L~~~~~~~L~~~L~~~~~e~~G~~----mif~lv~~lqe~l~~~ 125 (128)
T 2day_A 63 LVLQVPAEYPHEVPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTA----MLYELIEKGKEILSGP 125 (128)
T ss_dssp EEEEECSSTTSSCCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTTSC----CHHHHHHHHHHHHCCC
T ss_pred EEEEcCCCCCCCCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCE----EhHHHHHHHHHHHHhc
Confidence 44667999999999865441 11122334555555555544444421 3446666666655443
No 14
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=74.89 E-value=5.8 Score=34.55 Aligned_cols=64 Identities=11% Similarity=0.197 Sum_probs=41.8
Q ss_pred eEeecCCCCCCCCCccccCCcCC-CCchHHHHHHHHHHHHhh---CCCcccHHHHHHHHHHHHHHHhcC
Q psy8363 231 IQVSIPEDYPSHPPRCTMGHEHN-TTPFLTSVKNALESRIKK---LPLKYSVSQLLDTWEMSVRQACAP 295 (536)
Q Consensus 231 l~v~vP~dYP~~sP~~~~~~~y~-~t~FL~~v~~~~~sRL~~---lP~~~SvT~lL~tWe~SvrQac~~ 295 (536)
|.+..|.+||..+|........+ ...-+..+.+.+..-... +|=-|++-+.+..|-..+ |+=+.
T Consensus 66 L~~~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~-q~~~~ 133 (138)
T 2yz0_A 66 LHFAMTPMYPYTAPEIEFKNVQNVMDSQLQMLKSEFKKIHNTSRGQEIIFEITSFTQEKLDEF-QNVVN 133 (138)
T ss_dssp EEEECCSSTTSSCCEEEEECCCSCCSHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHHH-HHSCC
T ss_pred EEEECCCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHhCCCEEHHHHHHHHHHHHHHH-HHhhh
Confidence 45667999999999876542222 234456666666655443 344688888888888777 66543
No 15
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=73.69 E-value=13 Score=32.05 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=31.5
Q ss_pred eEeecCCCCCCCCCccccC--CcCCCCchHHHHHHHHHHHHhh---CCCcccHHHHHHHHH
Q psy8363 231 IQVSIPEDYPSHPPRCTMG--HEHNTTPFLTSVKNALESRIKK---LPLKYSVSQLLDTWE 286 (536)
Q Consensus 231 l~v~vP~dYP~~sP~~~~~--~~y~~t~FL~~v~~~~~sRL~~---lP~~~SvT~lL~tWe 286 (536)
|.|..|++||..+|..... ...+ ..-+..+++.+..-... +|=-|++-+.|..|-
T Consensus 67 L~v~~p~~YP~~~P~i~l~~~~~L~-~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l 126 (137)
T 1ukx_A 67 LRVKCPPTYPDVVPEIDLKNAKGLS-NESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFL 126 (137)
T ss_dssp EEECCCTTTTSSCCCCEEEEEESSS-SSHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCcEEEecCCCCC-HHHHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHH
Confidence 4555799999999987652 2222 34456666666555433 333455555444443
No 16
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.37 E-value=6.8 Score=33.60 Aligned_cols=59 Identities=10% Similarity=0.218 Sum_probs=33.3
Q ss_pred eEeecCCCCCCCCCccccC-CcCCCCchHHHHHHHHHHHHh---hCCCcccHHHHHHHHHHHH
Q psy8363 231 IQVSIPEDYPSHPPRCTMG-HEHNTTPFLTSVKNALESRIK---KLPLKYSVSQLLDTWEMSV 289 (536)
Q Consensus 231 l~v~vP~dYP~~sP~~~~~-~~y~~t~FL~~v~~~~~sRL~---~lP~~~SvT~lL~tWe~Sv 289 (536)
|.|..|++||..+|.+... ...-....+..+.+.+..-.. -+|=-|++-+.+..|-..+
T Consensus 59 L~v~~p~~YP~~~P~i~l~~~~~l~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~e~ 121 (128)
T 2ebm_A 59 LKFTYSEKYPDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEI 121 (128)
T ss_dssp EEEECCSSTTTSCCEEEEEEESSCCHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCEEHHHHHHHHHHHHHHH
Confidence 5667899999999987654 111122233444444444332 3344566666666665443
No 17
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.27 E-value=11 Score=32.39 Aligned_cols=19 Identities=26% Similarity=0.628 Sum_probs=15.1
Q ss_pred eEeecCCCCCCCCCccccC
Q psy8363 231 IQVSIPEDYPSHPPRCTMG 249 (536)
Q Consensus 231 l~v~vP~dYP~~sP~~~~~ 249 (536)
|.+..|.+||..+|.....
T Consensus 60 L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 60 LVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp EEEEECSSTTSSCCCCCCC
T ss_pred EEEECCCCCCCCCCeEEEE
Confidence 4566799999999987655
No 18
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=66.24 E-value=3.2 Score=37.10 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=32.9
Q ss_pred eEeecCCCCCCCCCccccC-CcCC--CCchHHH-HHHHHHHHHhhCCCcccHHHHHHHHHHHH
Q psy8363 231 IQVSIPEDYPSHPPRCTMG-HEHN--TTPFLTS-VKNALESRIKKLPLKYSVSQLLDTWEMSV 289 (536)
Q Consensus 231 l~v~vP~dYP~~sP~~~~~-~~y~--~t~FL~~-v~~~~~sRL~~lP~~~SvT~lL~tWe~Sv 289 (536)
|.|..|.+||..+|..... ...+ ....|.. +...+.+...-++--|++.+.|..|...+
T Consensus 77 L~v~lP~~YP~~~P~i~l~~~~l~~~~~~~L~~~L~~~~~~~~~G~~mif~lv~~lqe~l~~~ 139 (152)
T 2dax_A 77 LACILPFKYPAVLPEITVRSVLLSRSQQTQLNTDLTAFLQKHCHGDVCILNATEWVREHASGY 139 (152)
T ss_dssp EEEEECSSTTSSCCCCEEECTTSCHHHHHHHHHHHHHHHHHSSCSSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCeEEEEcccCCHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 4566899999999998655 2221 1122222 33333322334555677777666665443
No 19
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.75 E-value=15 Score=31.55 Aligned_cols=19 Identities=26% Similarity=0.628 Sum_probs=15.0
Q ss_pred ceeecCCCCCCCCCCCccC
Q psy8363 490 IQVSIPEDYPSHPPRCTMG 508 (536)
Q Consensus 490 i~v~vP~dYP~~sp~~~~~ 508 (536)
++|..|++||..+|.....
T Consensus 60 L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 60 LVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp EEEEECSSTTSSCCCCCCC
T ss_pred EEEECCCCCCCCCCeEEEE
Confidence 4567799999999987543
No 20
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=57.00 E-value=26 Score=31.54 Aligned_cols=57 Identities=21% Similarity=0.178 Sum_probs=32.0
Q ss_pred eEeecCCCCCCCCCccccC-CcCCCCchHHHHHHHHHHHHhhC--CC--cccHHHHHHHHHHH
Q psy8363 231 IQVSIPEDYPSHPPRCTMG-HEHNTTPFLTSVKNALESRIKKL--PL--KYSVSQLLDTWEMS 288 (536)
Q Consensus 231 l~v~vP~dYP~~sP~~~~~-~~y~~t~FL~~v~~~~~sRL~~l--P~--~~SvT~lL~tWe~S 288 (536)
|+|..|.+||..+|..... ..++ ..-...+.+.+.+-+... .. .|++-+.|..|...
T Consensus 79 L~v~lP~~YP~~~P~i~l~~~~l~-~~~~~~L~~~L~~~l~~~~lG~~mif~lve~lqe~~~~ 140 (154)
T 2daw_A 79 LQVTMPHSYPYLALQLFGRSSELD-RHQQLLLNKGLTSYIGTFDPGELCVCAAIQWLQDNSAS 140 (154)
T ss_dssp EEEEECSSTTSSCCEEEEECSSSC-HHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHHHHTTHH
T ss_pred EEEEcCCCCCCCCCcEEEEeCCCC-HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 5666799999999987655 2222 122344555555555433 22 45555555555433
No 21
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=56.46 E-value=11 Score=25.32 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8363 319 KKELLKQLEELKTELANLRVAKV 341 (536)
Q Consensus 319 ~eEL~kqL~eLK~EL~~LR~qkv 341 (536)
.+||.++|++|+..|-.||-...
T Consensus 3 adelykeledlqerlrklrkklr 25 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999888886544
No 22
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=48.31 E-value=23 Score=30.22 Aligned_cols=17 Identities=24% Similarity=0.784 Sum_probs=13.6
Q ss_pred ceeecCCCCCCCCCCCc
Q psy8363 490 IQVSIPEDYPSHPPRCT 506 (536)
Q Consensus 490 i~v~vP~dYP~~sp~~~ 506 (536)
+.|..|++||..+|...
T Consensus 63 L~~~~p~~YP~~~P~i~ 79 (128)
T 2day_A 63 LVLQVPAEYPHEVPQIS 79 (128)
T ss_dssp EEEEECSSTTSSCCEEE
T ss_pred EEEEcCCCCCCCCCCeE
Confidence 45677999999999764
No 23
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=46.70 E-value=27 Score=30.06 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=22.2
Q ss_pred ceeecCCCCCCCCCCCcc-CccCCCCchHHHHHHHHHHH
Q psy8363 490 IQVSIPEDYPSHPPRCTM-GHEHNTTPFLTSVKNALESR 527 (536)
Q Consensus 490 i~v~vP~dYP~~sp~~~~-~~~Y~a~pFl~~v~~~l~sr 527 (536)
+.|..|++||..+|.... ....-...-+..+.+.|...
T Consensus 67 L~v~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~~~L~~~ 105 (137)
T 1ukx_A 67 LRVKCPPTYPDVVPEIDLKNAKGLSNESVNLLKSHLEEL 105 (137)
T ss_dssp EEECCCTTTTSSCCCCEEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCcEEEecCCCCCHHHHHHHHHHHHHH
Confidence 456669999999997653 22222234455555555443
No 24
>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Homo sapiens} SCOP: a.194.1.1
Probab=43.61 E-value=3.3 Score=34.98 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=23.1
Q ss_pred HHHhhhhccccccccc-cchHHHHHHHhhcCCCccc
Q psy8363 113 HVLEKLDFKHSSLLRD-HHPLLEAVSGALQSSNANH 147 (536)
Q Consensus 113 ~~LeKl~~~~~~~~~~-~~PLLdaV~ani~SP~~NH 147 (536)
.|||+|+.+-...-.. +.-=|..+.+.++||+|||
T Consensus 7 q~leRLQ~KL~erGd~s~~ekLs~lk~~LqSPLF~q 42 (83)
T 1vf6_A 7 QVLDRLKMKLQEKGDTSQNEKLSMFYETLKSPLFNQ 42 (83)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHccccchHhHHHHHHHHHhCHHHHH
Confidence 4678777665431111 1234788889999999999
No 25
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=41.74 E-value=9.7 Score=34.82 Aligned_cols=60 Identities=22% Similarity=0.368 Sum_probs=34.3
Q ss_pred CchhhhhHHHhhccCCc---ccccCCCCCCCCCcEEEEEEecCCCCCC-------CCCeEeecCCCCCCCCCccc
Q psy8363 183 DVPEVLQGEIARLDQRF---KVSLDPTQQSGSKAIQLVCWLDDRHLPC-------VPPIQVSIPEDYPSHPPRCT 247 (536)
Q Consensus 183 ~ip~vlQgEiarLd~kF---~V~lDp~~~~~~~~i~LiC~LdDk~LP~-------VPPl~v~vP~dYP~~sP~~~ 247 (536)
.-++....||+++-..| ..+.|.-. ..+..|+|+-.- +|- -=||.|.+|.+||..+|.|-
T Consensus 20 ~~~d~t~~dv~~vl~~yp~L~p~~~~y~---G~~~~LL~l~Gt--Ipv~y~g~~y~iPi~Iwlp~~YP~~pP~vf 89 (146)
T 3obq_A 20 KYRDLTVRETVNVITLYKDLKPVLDSYG---TGSRELMNLTGT--IPVPYRGNTYNIPICLWLLDTYPYNPPICF 89 (146)
T ss_dssp SSHHHHHHHHHHHHHHCTTEEEEEEESS---STTCEEEEEEEE--EEEECSSCEEEEEEEEECCTTTTTSCCEEE
T ss_pred CCcchhHHHHHHHHHhCCCCceEeeeee---CChheEEEEEEE--eeeeecCccccceEEEEeCccCCCCCCEEE
Confidence 34555667777776655 33333333 233444444221 121 12678889999999999883
No 26
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=40.29 E-value=41 Score=30.87 Aligned_cols=19 Identities=32% Similarity=0.812 Sum_probs=15.8
Q ss_pred eEeecCCCCCCCCCccccC
Q psy8363 231 IQVSIPEDYPSHPPRCTMG 249 (536)
Q Consensus 231 l~v~vP~dYP~~sP~~~~~ 249 (536)
+.|.+|.|||..+|.+...
T Consensus 69 ~~i~fp~~YP~~PP~v~F~ 87 (172)
T 2awf_A 69 AHLTFPKDYPLRPPKMKFI 87 (172)
T ss_dssp EEEECCTTTTSSCCEEEEC
T ss_pred EEEECCcccCCCCCccccc
Confidence 6788899999999987654
No 27
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=38.71 E-value=11 Score=34.90 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=35.3
Q ss_pred hhhhhHHHhhccC---CcccccCCCCCCCCCcEEEEEEecCCCCC---CC---CCeEeecCCCCCCCCCccccC
Q psy8363 185 PEVLQGEIARLDQ---RFKVSLDPTQQSGSKAIQLVCWLDDRHLP---CV---PPIQVSIPEDYPSHPPRCTMG 249 (536)
Q Consensus 185 p~vlQgEiarLd~---kF~V~lDp~~~~~~~~i~LiC~LdDk~LP---~V---PPl~v~vP~dYP~~sP~~~~~ 249 (536)
++....|++.+=. -|..+.|.--.+++.+-.|.|+-.-...+ .+ =||.|.+|.+||..+|.|-..
T Consensus 30 ~~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~ 103 (162)
T 3r3q_A 30 GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISIN 103 (162)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEEC
T ss_pred hhHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEE
Confidence 3444455554433 34455444434433344455543222111 12 468888999999999998554
No 28
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=37.05 E-value=58 Score=28.10 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=22.8
Q ss_pred ceeecCCCCCCCCCCCccC-ccCCCCchHHHHHHHHHHHH
Q psy8363 490 IQVSIPEDYPSHPPRCTMG-HEHNTTPFLTSVKNALESRI 528 (536)
Q Consensus 490 i~v~vP~dYP~~sp~~~~~-~~Y~a~pFl~~v~~~l~srl 528 (536)
+.|..|++||..+|..... ...-...-+..+.+.|....
T Consensus 66 L~~~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~ 105 (138)
T 2yz0_A 66 LHFAMTPMYPYTAPEIEFKNVQNVMDSQLQMLKSEFKKIH 105 (138)
T ss_dssp EEEECCSSTTSSCCEEEEECCCSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 4566799999999976542 22122344555555555443
No 29
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.22 E-value=22 Score=30.32 Aligned_cols=18 Identities=22% Similarity=0.623 Sum_probs=14.8
Q ss_pred ceeecCCCCCCCCCCCcc
Q psy8363 490 IQVSIPEDYPSHPPRCTM 507 (536)
Q Consensus 490 i~v~vP~dYP~~sp~~~~ 507 (536)
++|..|++||..+|.+..
T Consensus 59 L~v~~p~~YP~~~P~i~l 76 (128)
T 2ebm_A 59 LKFTYSEKYPDEAPLYEI 76 (128)
T ss_dssp EEEECCSSTTTSCCEEEE
T ss_pred EEEEeCCCCCCCCceEEE
Confidence 567779999999998753
No 30
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=34.08 E-value=38 Score=30.73 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=30.1
Q ss_pred hhhhhhhhhcccccccccCccCCCCCCcEEEEEeecCCCCC---CCCCceeecCCCCCCCCCCC
Q psy8363 445 EVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLP---CVPPIQVSIPEDYPSHPPRC 505 (536)
Q Consensus 445 ~vlqgEiArLd~kF~V~ld~~~~s~~~~v~LiC~LdDk~LP---~vPpi~v~vP~dYP~~sp~~ 505 (536)
.-|+.|++.|+.--.+.+.. .+.+.-.+..|.+--..=| .+=.+.|.+|++||..+|..
T Consensus 9 ~RL~kEl~~l~~~~~~~~~~--~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~PP~v 70 (160)
T 1y8x_A 9 LRIQKDINELNLPKTCDISF--SDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKV 70 (160)
T ss_dssp HHHHHHHHTCCCCTTEEEEC--SSTTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHhcCCCCCeEEEe--ccCCccceEEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCEE
Confidence 34677777775322222220 1122233444555211100 11236788999999999975
No 31
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=33.92 E-value=65 Score=30.08 Aligned_cols=19 Identities=26% Similarity=0.551 Sum_probs=15.9
Q ss_pred eEeecCCCCCCCCCccccC
Q psy8363 231 IQVSIPEDYPSHPPRCTMG 249 (536)
Q Consensus 231 l~v~vP~dYP~~sP~~~~~ 249 (536)
+.|.+|.|||..+|.+...
T Consensus 84 ~~i~fp~~YP~~PP~v~f~ 102 (190)
T 3o2u_A 84 FNLDFNEVYPIEPPKVVCL 102 (190)
T ss_dssp EEEECCTTTTTSCCEEEEC
T ss_pred EEEECCCCCCCCCceeEEe
Confidence 7888999999999987544
No 32
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=29.81 E-value=58 Score=29.04 Aligned_cols=16 Identities=38% Similarity=1.061 Sum_probs=13.6
Q ss_pred ceeecCCCCCCCCCCC
Q psy8363 490 IQVSIPEDYPSHPPRC 505 (536)
Q Consensus 490 i~v~vP~dYP~~sp~~ 505 (536)
+.|.+|++||..+|..
T Consensus 53 ~~i~fp~~YP~~PP~v 68 (154)
T 1c4z_D 53 IEINFPAEYPFKPPKI 68 (154)
T ss_dssp EEEECCTTTTTSCCEE
T ss_pred EEEEeCCCCCCCCCEE
Confidence 5788899999999875
No 33
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=29.66 E-value=40 Score=31.29 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=33.2
Q ss_pred hhhhhhhhhcccccccccCccCCCCCCcEEEEEeecCCCCC---CCCCceeecCCCCCCCCCCCc
Q psy8363 445 EVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLP---CVPPIQVSIPEDYPSHPPRCT 506 (536)
Q Consensus 445 ~vlqgEiArLd~kF~V~ld~~~~s~~~~v~LiC~LdDk~LP---~vPpi~v~vP~dYP~~sp~~~ 506 (536)
.-|+.|++.|+.--.+.+.. .+.+.-.+..|.+--..-| .+=.+.|.+|+|||..+|...
T Consensus 29 ~RL~kEl~~l~~~~~i~~~~--p~~~nl~~W~~~igP~~tpYegg~f~~~i~fp~~YP~~PP~v~ 91 (180)
T 2nvu_C 29 LRIQKDINELNLPKTCDISF--SDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVK 91 (180)
T ss_dssp HHHHHHHHTCCCCTTEEEEC--SSTTCTTEEEEEECCCSGGGTTBCEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHhcCCCCCeEEEe--cccccccceEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCcCc
Confidence 46889999996433333320 1122234445555211100 122367899999999999753
No 34
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=29.31 E-value=63 Score=29.25 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=32.4
Q ss_pred hhhhHHHhhccCCcccccC-CCCCCCCCcEEEEEEecCCCCC---CCCCeEeecCCCCCCCCCccccC
Q psy8363 186 EVLQGEIARLDQRFKVSLD-PTQQSGSKAIQLVCWLDDRHLP---CVPPIQVSIPEDYPSHPPRCTMG 249 (536)
Q Consensus 186 ~vlQgEiarLd~kF~V~lD-p~~~~~~~~i~LiC~LdDk~LP---~VPPl~v~vP~dYP~~sP~~~~~ 249 (536)
.-|+.|+..|+.--.+.+. |. .+.-.+..|.+.-..=| .+=-+.|.+|.+||..+|.+...
T Consensus 9 ~RL~kEl~~l~~~~~~~~~~~~---~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 73 (160)
T 1y8x_A 9 LRIQKDINELNLPKTCDISFSD---PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 73 (160)
T ss_dssp HHHHHHHHTCCCCTTEEEECSS---TTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTSCCEEEEC
T ss_pred HHHHHHHHhcCCCCCeEEEecc---CCccceEEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEe
Confidence 3477888888653333332 22 11112233334211101 12247888999999999987554
No 35
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=27.97 E-value=44 Score=29.65 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=14.4
Q ss_pred ceeecCCCCCCCCCCCcc
Q psy8363 490 IQVSIPEDYPSHPPRCTM 507 (536)
Q Consensus 490 i~v~vP~dYP~~sp~~~~ 507 (536)
+.|+.|++||..+|....
T Consensus 77 L~v~lP~~YP~~~P~i~l 94 (152)
T 2dax_A 77 LACILPFKYPAVLPEITV 94 (152)
T ss_dssp EEEEECSSTTSSCCCCEE
T ss_pred EEEECCCCCCCCCCeEEE
Confidence 456779999999998753
No 36
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=27.75 E-value=1.9e+02 Score=25.23 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=40.4
Q ss_pred ccchhhhcCCHHHHHHHHHHHHHHHHHH-----HHHHHhcCCCCCchhHHHHhhhHHHHHH
Q psy8363 309 VKCSELRTKDKKELLKQLEELKTELANL-----RVAKVTGGAASKLSKIRVVRKAILRVYI 364 (536)
Q Consensus 309 mKa~ELR~kS~eEL~kqL~eLK~EL~~L-----R~qkvtG~al~k~skIr~vRK~IARVlT 364 (536)
.-+.-|-+||+.||..+-.+|.+.+.++ |++..... -.++|+.+--.|-|+.+
T Consensus 22 ~h~ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~---~~~~v~eLe~everL~~ 79 (104)
T 3s9g_A 22 YHTESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLESKR---LDARVRELELELDRLRA 79 (104)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---chhhHHHHHHHHHHHHH
Confidence 3456689999999999999999999888 55554333 14788888888887755
No 37
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=27.60 E-value=18 Score=33.00 Aligned_cols=57 Identities=23% Similarity=0.402 Sum_probs=32.9
Q ss_pred hhhhhhhhhhccccc---ccccCccCCCCCCcEEEEEeecCCCCCC-------CCCceeecCCCCCCCCCCC
Q psy8363 444 PEVLQGEIARLDQRF---KVSLDPTQQSGSKAIQLVCWLDDRHLPC-------VPPIQVSIPEDYPSHPPRC 505 (536)
Q Consensus 444 p~vlqgEiArLd~kF---~V~ld~~~~s~~~~v~LiC~LdDk~LP~-------vPpi~v~vP~dYP~~sp~~ 505 (536)
++....||+.+-+.| ....|.-. .++..|+|+-- .+|- -=||.|.+|++||..+|.|
T Consensus 22 ~d~t~~dv~~vl~~yp~L~p~~~~y~---G~~~~LL~l~G--tIpv~y~g~~y~iPi~Iwlp~~YP~~pP~v 88 (146)
T 3obq_A 22 RDLTVRETVNVITLYKDLKPVLDSYG---TGSRELMNLTG--TIPVPYRGNTYNIPICLWLLDTYPYNPPIC 88 (146)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEESS---STTCEEEEEEE--EEEEECSSCEEEEEEEEECCTTTTTSCCEE
T ss_pred cchhHHHHHHHHHhCCCCceEeeeee---CChheEEEEEE--EeeeeecCccccceEEEEeCccCCCCCCEE
Confidence 344455666665555 33333333 34456666532 2221 0257899999999999987
No 38
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=27.59 E-value=18 Score=33.55 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=28.7
Q ss_pred cccccCccCCCCCCcEEEEEeecCCCCC---CC---CCceeecCCCCCCCCCCCc
Q psy8363 458 FKVSLDPTQQSGSKAIQLVCWLDDRHLP---CV---PPIQVSIPEDYPSHPPRCT 506 (536)
Q Consensus 458 F~V~ld~~~~s~~~~v~LiC~LdDk~LP---~v---Ppi~v~vP~dYP~~sp~~~ 506 (536)
|....|.--.+++.+-.|+|.--=.-.+ .+ =||.|.+|++||..+|.|-
T Consensus 47 L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~ 101 (162)
T 3r3q_A 47 LRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFIS 101 (162)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEE
T ss_pred CceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEE
Confidence 4455554434444445666653221111 12 3588999999999999874
No 39
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=25.83 E-value=33 Score=32.42 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=16.8
Q ss_pred CeEeecCCCCCCCCCccccC
Q psy8363 230 PIQVSIPEDYPSHPPRCTMG 249 (536)
Q Consensus 230 Pl~v~vP~dYP~~sP~~~~~ 249 (536)
.|++.+|++||..+|.+.+.
T Consensus 86 ~L~~~fPe~YP~~PPeV~F~ 105 (172)
T 2z6o_A 86 DIEFDIPITYPTTAPEIAVP 105 (172)
T ss_dssp EEEEECCTTTTTSCCCCBCG
T ss_pred EEEEECCCCCCCCCCeeeeC
Confidence 45777899999999999773
No 40
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=25.56 E-value=42 Score=29.72 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=22.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8363 316 TKDKKELLKQLEELKTELANLRVAKVT 342 (536)
Q Consensus 316 ~kS~eEL~kqL~eLK~EL~~LR~qkvt 342 (536)
+++.|||.++|..|+-|=..||=+-..
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999866543
No 41
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=24.77 E-value=68 Score=29.70 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=33.3
Q ss_pred hhhhHHHhhccCCcccccC-CCCCCCCCcEEEEEEecCCCCC---CCCCeEeecCCCCCCCCCccccC
Q psy8363 186 EVLQGEIARLDQRFKVSLD-PTQQSGSKAIQLVCWLDDRHLP---CVPPIQVSIPEDYPSHPPRCTMG 249 (536)
Q Consensus 186 ~vlQgEiarLd~kF~V~lD-p~~~~~~~~i~LiC~LdDk~LP---~VPPl~v~vP~dYP~~sP~~~~~ 249 (536)
.-|+.|+..|+.--.+.+. |. .+.-.+..|.+.-..-| .+=-+.|.+|.|||..+|.+...
T Consensus 29 ~RL~kEl~~l~~~~~i~~~~p~---~~nl~~W~~~igP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~ 93 (180)
T 2nvu_C 29 LRIQKDINELNLPKTCDISFSD---PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 93 (180)
T ss_dssp HHHHHHHHTCCCCTTEEEECSS---TTCTTEEEEEECCCSGGGTTBCEEEEEECCTTTTTSCCEEEEC
T ss_pred HHHHHHHHhcCCCCCeEEEecc---cccccceEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCcCcee
Confidence 4578999999654333333 22 11112233333111100 12237888999999999987554
No 42
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=24.54 E-value=1.8e+02 Score=26.04 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=56.0
Q ss_pred CCchHHHHHHHHHHHHhhCCCc--ccHHHHHHHHHHHHHHHhcCCCCCCCCCCccccccchhhhcC--CHHHHHHHHHHH
Q psy8363 254 TTPFLTSVKNALESRIKKLPLK--YSVSQLLDTWEMSVRQACAPTRNPTSSPSISVKVKCSELRTK--DKKELLKQLEEL 329 (536)
Q Consensus 254 ~t~FL~~v~~~~~sRL~~lP~~--~SvT~lL~tWe~SvrQac~~~~~~~ap~t~m~kmKa~ELR~k--S~eEL~kqL~eL 329 (536)
.-..|..|-..++.||..+-.. +... ++=..+| |.+--=++|+-.+ ..++|..+++++
T Consensus 26 ~ee~L~~vA~~vd~km~ei~~~~~~~~l---~~~r~aV---------------LaALNiadEl~k~~~~~~~L~~~l~~~ 87 (138)
T 3hnw_A 26 SEEYLQRVASYINNKITEFNKEESYRRM---SAELRTD---------------MMYLNIADDYFKAKKMADSLSLDIENK 87 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCHHHHTS---CHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCCC---CHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888889999998877643 2211 1111111 1111112333221 366777788888
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHhhhHHHHHHHHhHHHHH
Q psy8363 330 KTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKE 372 (536)
Q Consensus 330 K~EL~~LR~qkvtG~al~k~skIr~vRK~IARVlTVlnqkqr~ 372 (536)
.+|+..|+-..+.-+ .++..+++.+..+.--+++-+++
T Consensus 88 ~kE~~~lK~el~~~~-----~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQ-----IKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777776544 66777777777776666554443
No 43
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=23.92 E-value=50 Score=29.59 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=12.8
Q ss_pred ceeecCCCCCCCCCCCc
Q psy8363 490 IQVSIPEDYPSHPPRCT 506 (536)
Q Consensus 490 i~v~vP~dYP~~sp~~~ 506 (536)
++|+.|++||..+|...
T Consensus 79 L~v~lP~~YP~~~P~i~ 95 (154)
T 2daw_A 79 LQVTMPHSYPYLALQLF 95 (154)
T ss_dssp EEEEECSSTTSSCCEEE
T ss_pred EEEEcCCCCCCCCCcEE
Confidence 35566999999988754
No 44
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=23.60 E-value=55 Score=23.48 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=20.0
Q ss_pred cchhhhcCCHHHHHHHHHHHHHHHHHHH
Q psy8363 310 KCSELRTKDKKELLKQLEELKTELANLR 337 (536)
Q Consensus 310 Ka~ELR~kS~eEL~kqL~eLK~EL~~LR 337 (536)
++..|-+| .|||..+..+|..|+..||
T Consensus 2 RMnQledK-vEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADK-LEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHH-HHHHHHHhHHHHHHHHHHH
Confidence 44566664 7888888888888887665
No 45
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=23.12 E-value=23 Score=23.86 Aligned_cols=9 Identities=67% Similarity=1.051 Sum_probs=6.6
Q ss_pred hhhhhhhhc
Q psy8363 446 VLQGEIARL 454 (536)
Q Consensus 446 vlqgEiArL 454 (536)
-|+||||||
T Consensus 19 klegevarl 27 (28)
T 4dac_A 19 KLEGEVARL 27 (28)
T ss_dssp HHHHHTTTC
T ss_pred hhhhhhhhc
Confidence 367888876
No 46
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=23.02 E-value=2.9e+02 Score=22.25 Aligned_cols=49 Identities=12% Similarity=0.016 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHhhhHHHHHHHHhHHH
Q psy8363 322 LLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQ 370 (536)
Q Consensus 322 L~kqL~eLK~EL~~LR~qkvtG~al~k~skIr~vRK~IARVlTVlnqkq 370 (536)
+.++...|+.|+.+|+-....-.+-++.++--.+||.+..+..-|.+..
T Consensus 4 ~~~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~ 52 (65)
T 3sja_C 4 LSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLK 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888887766667899999999999999987776543
No 47
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=21.42 E-value=39 Score=29.28 Aligned_cols=19 Identities=32% Similarity=0.765 Sum_probs=15.0
Q ss_pred eEeecCCCCCCCCCccccC
Q psy8363 231 IQVSIPEDYPSHPPRCTMG 249 (536)
Q Consensus 231 l~v~vP~dYP~~sP~~~~~ 249 (536)
+.|.+|.|||..+|.+...
T Consensus 57 ~~i~fp~~YP~~PP~v~f~ 75 (125)
T 2fo3_A 57 LKIIFPDDYPLKPPIVYFL 75 (125)
T ss_dssp EEEECCTTTTTSCCEEEEC
T ss_pred EEEEcCCCCCCCCCEEEEe
Confidence 5677899999999887554
No 48
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=21.35 E-value=21 Score=33.84 Aligned_cols=30 Identities=30% Similarity=0.625 Sum_probs=22.6
Q ss_pred EeecCCCCCCCCCceeecCCCCCCCCCCCc
Q psy8363 477 CWLDDRHLPCVPPIQVSIPEDYPSHPPRCT 506 (536)
Q Consensus 477 C~LdDk~LP~vPpi~v~vP~dYP~~sp~~~ 506 (536)
||.-+..+=.+=.|++.+|++||..+|.+.
T Consensus 74 cw~~~~~~~y~F~L~~~fPe~YP~~PPeV~ 103 (172)
T 2z6o_A 74 CWYIHDLLKYEFDIEFDIPITYPTTAPEIA 103 (172)
T ss_dssp EEEEETTEEEEEEEEEECCTTTTTSCCCCB
T ss_pred ccccccccceEEEEEEECCCCCCCCCCeee
Confidence 555444444455678999999999999986
No 49
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=21.22 E-value=43 Score=29.02 Aligned_cols=17 Identities=35% Similarity=0.909 Sum_probs=13.1
Q ss_pred ceeecCCCCCCCCCCCc
Q psy8363 490 IQVSIPEDYPSHPPRCT 506 (536)
Q Consensus 490 i~v~vP~dYP~~sp~~~ 506 (536)
+.|.+|+|||..+|...
T Consensus 57 ~~i~fp~~YP~~PP~v~ 73 (125)
T 2fo3_A 57 LKIIFPDDYPLKPPIVY 73 (125)
T ss_dssp EEEECCTTTTTSCCEEE
T ss_pred EEEEcCCCCCCCCCEEE
Confidence 45677999999988753
No 50
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=21.22 E-value=39 Score=29.79 Aligned_cols=19 Identities=32% Similarity=0.742 Sum_probs=15.3
Q ss_pred eEeecCCCCCCCCCccccC
Q psy8363 231 IQVSIPEDYPSHPPRCTMG 249 (536)
Q Consensus 231 l~v~vP~dYP~~sP~~~~~ 249 (536)
+.|.+|.|||..+|.+...
T Consensus 71 ~~i~fp~~YP~~PP~v~f~ 89 (136)
T 2h2y_A 71 IKIIFPDNYPLKPPIVYFL 89 (136)
T ss_dssp EEEECCTTTTTSCCEEEEC
T ss_pred EEEEeCCCCCCCCCEEEEe
Confidence 6777899999999887554
No 51
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=21.09 E-value=38 Score=30.13 Aligned_cols=17 Identities=18% Similarity=0.483 Sum_probs=13.1
Q ss_pred ceeecCCCCCCCCCCCc
Q psy8363 490 IQVSIPEDYPSHPPRCT 506 (536)
Q Consensus 490 i~v~vP~dYP~~sp~~~ 506 (536)
+.|.+|+|||..+|...
T Consensus 75 l~i~fp~~YP~~PP~v~ 91 (136)
T 2a7l_A 75 LLFKFSSRYPFDSPQVM 91 (136)
T ss_dssp EEEEECTTTTTSCCEEE
T ss_pred EEEECCCCCCCCCCEEE
Confidence 45677999999988754
No 52
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=21.09 E-value=38 Score=30.07 Aligned_cols=19 Identities=16% Similarity=0.441 Sum_probs=14.5
Q ss_pred eEeecCCCCCCCCCccccC
Q psy8363 231 IQVSIPEDYPSHPPRCTMG 249 (536)
Q Consensus 231 l~v~vP~dYP~~sP~~~~~ 249 (536)
+.|.+|+|||..+|.+...
T Consensus 75 l~i~fp~~YP~~PP~v~F~ 93 (136)
T 2a7l_A 75 LLFKFSSRYPFDSPQVMFT 93 (136)
T ss_dssp EEEEECTTTTTSCCEEEEE
T ss_pred EEEECCCCCCCCCCEEEEe
Confidence 5677788888888877544
No 53
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=20.91 E-value=47 Score=29.79 Aligned_cols=83 Identities=22% Similarity=0.338 Sum_probs=43.7
Q ss_pred eEeecCCCCCCCCCccccC-CcCC------CCchHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy8363 231 IQVSIPEDYPSHPPRCTMG-HEHN------TTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQACAPTRNPTSSP 303 (536)
Q Consensus 231 l~v~vP~dYP~~sP~~~~~-~~y~------~t~FL~~v~~~~~sRL~~lP~~~SvT~lL~tWe~SvrQac~~~~~~~ap~ 303 (536)
+.|.+|.+||..+|.+... .-|- +.--|.-+. . .=-| .+||.++|- +|+. ++..+..-.|
T Consensus 60 ~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~iCl~iL~----~--~W~p-~~~i~~vL~----si~~-ll~~pn~~~p- 126 (156)
T 2e2c_A 60 LTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILK----E--NWTA-SYDVRTILL----SLQS-LLGEPNNASP- 126 (156)
T ss_dssp EEEECCTTTTSSCCEEEESSCCCBTTBCTTCBBCCGGGT----T--TCCT-TCCHHHHHH----HHHH-HTTSCCCSSC-
T ss_pred EEEECCCCCCCCCCEEEEeCCcccCCCccCceEECcccc----c--cCCC-CCcHHHHHH----HHHH-HHhCCCCCCH-
Confidence 5677899999998887544 2222 211111111 0 0123 388999884 4544 4434433333
Q ss_pred CccccccchhhhcCCHHHHHHHHHHHH
Q psy8363 304 SISVKVKCSELRTKDKKELLKQLEELK 330 (536)
Q Consensus 304 t~m~kmKa~ELR~kS~eEL~kqL~eLK 330 (536)
....+.++- .+.++-.+...+.-
T Consensus 127 ---~n~~aa~~~-~d~~~y~~~~~~~~ 149 (156)
T 2e2c_A 127 ---LNAQAADMW-SNQTEYKKVLHEKY 149 (156)
T ss_dssp ---SCHHHHHHT-TCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHh-cCHHHHHHHHHHHH
Confidence 334455555 46776666555443
No 54
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=20.79 E-value=48 Score=29.52 Aligned_cols=20 Identities=30% Similarity=0.785 Sum_probs=15.8
Q ss_pred CeEeecCCCCCCCCCccccC
Q psy8363 230 PIQVSIPEDYPSHPPRCTMG 249 (536)
Q Consensus 230 Pl~v~vP~dYP~~sP~~~~~ 249 (536)
-+.|.+|.|||..+|.+...
T Consensus 51 ~~~i~fp~~YP~~PP~v~f~ 70 (149)
T 2r0j_A 51 KLELFLPEQYPMEPPKVRFL 70 (149)
T ss_dssp EEEEECCTTTTTSCCEEEEC
T ss_pred EEEEeCCcccCCCCCeeEec
Confidence 36778899999999887554
No 55
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=20.77 E-value=49 Score=29.87 Aligned_cols=19 Identities=37% Similarity=0.871 Sum_probs=15.4
Q ss_pred eEeecCCCCCCCCCccccC
Q psy8363 231 IQVSIPEDYPSHPPRCTMG 249 (536)
Q Consensus 231 l~v~vP~dYP~~sP~~~~~ 249 (536)
+.|.+|.+||..+|.+...
T Consensus 56 ~~i~fp~~YP~~PP~v~f~ 74 (165)
T 2ucz_A 56 AKLEFPKDYPLSPPKLTFT 74 (165)
T ss_dssp EEEECCTTTTTSCCEEEES
T ss_pred EEEECCccCCCCCCEEEEe
Confidence 5677899999999887654
No 56
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=20.77 E-value=48 Score=29.49 Aligned_cols=20 Identities=30% Similarity=0.788 Sum_probs=15.7
Q ss_pred CeEeecCCCCCCCCCccccC
Q psy8363 230 PIQVSIPEDYPSHPPRCTMG 249 (536)
Q Consensus 230 Pl~v~vP~dYP~~sP~~~~~ 249 (536)
-+.|.+|.+||..+|.....
T Consensus 54 ~~~i~fp~~YP~~PP~v~f~ 73 (150)
T 1z2u_A 54 FLTIHFPTDYPFKPPKVAFT 73 (150)
T ss_dssp EEEEECCTTTTSSCCEEEES
T ss_pred EEEEECCCCCCCCCcEEEEe
Confidence 36788899999999987544
No 57
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=20.64 E-value=45 Score=29.41 Aligned_cols=17 Identities=35% Similarity=0.884 Sum_probs=13.5
Q ss_pred ceeecCCCCCCCCCCCc
Q psy8363 490 IQVSIPEDYPSHPPRCT 506 (536)
Q Consensus 490 i~v~vP~dYP~~sp~~~ 506 (536)
+.|.+|+|||..+|...
T Consensus 71 ~~i~fp~~YP~~PP~v~ 87 (136)
T 2h2y_A 71 IKIIFPDNYPLKPPIVY 87 (136)
T ss_dssp EEEECCTTTTTSCCEEE
T ss_pred EEEEeCCCCCCCCCEEE
Confidence 46778999999998753
No 58
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=20.64 E-value=48 Score=29.69 Aligned_cols=20 Identities=25% Similarity=0.728 Sum_probs=16.0
Q ss_pred CeEeecCCCCCCCCCccccC
Q psy8363 230 PIQVSIPEDYPSHPPRCTMG 249 (536)
Q Consensus 230 Pl~v~vP~dYP~~sP~~~~~ 249 (536)
.+.|.+|.+||..+|.+...
T Consensus 55 ~~~i~fp~~YP~~PP~v~f~ 74 (155)
T 1jat_A 55 ELELYLPDDYPMEAPKVRFL 74 (155)
T ss_dssp EEEEECCTTTTTSCCEEEEC
T ss_pred EEEEEcCCCCCCCCCcceee
Confidence 36788899999999987544
No 59
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=20.51 E-value=49 Score=29.40 Aligned_cols=20 Identities=25% Similarity=0.813 Sum_probs=15.7
Q ss_pred CeEeecCCCCCCCCCccccC
Q psy8363 230 PIQVSIPEDYPSHPPRCTMG 249 (536)
Q Consensus 230 Pl~v~vP~dYP~~sP~~~~~ 249 (536)
-+.|.+|.+||..+|.....
T Consensus 52 ~~~i~fp~~YP~~PP~v~f~ 71 (149)
T 1fxt_A 52 VVDIEVPMEYPFKPPKMQFD 71 (149)
T ss_dssp EEEEECCTTTTSSCCEEEES
T ss_pred EEEEECCCCCCCCCCEEEEe
Confidence 36777899999999887544
No 60
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=20.43 E-value=51 Score=28.99 Aligned_cols=19 Identities=26% Similarity=0.681 Sum_probs=15.3
Q ss_pred eEeecCCCCCCCCCccccC
Q psy8363 231 IQVSIPEDYPSHPPRCTMG 249 (536)
Q Consensus 231 l~v~vP~dYP~~sP~~~~~ 249 (536)
+.|.+|.+||..+|.+...
T Consensus 61 ~~i~fp~~YP~~PP~v~f~ 79 (138)
T 1jat_B 61 LSIDCGPNYPDSPPKVTFI 79 (138)
T ss_dssp EEEECCTTTTTSCCEEEES
T ss_pred EEEECCCCCCCCCCceEEE
Confidence 5677899999999987554
No 61
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=20.34 E-value=49 Score=29.76 Aligned_cols=20 Identities=35% Similarity=0.855 Sum_probs=16.1
Q ss_pred CeEeecCCCCCCCCCccccC
Q psy8363 230 PIQVSIPEDYPSHPPRCTMG 249 (536)
Q Consensus 230 Pl~v~vP~dYP~~sP~~~~~ 249 (536)
.+.|.+|.|||..+|.+...
T Consensus 61 ~~~i~fp~~YP~~PP~v~f~ 80 (159)
T 2bep_A 61 QLEIKIPETYPFNPPKVRFI 80 (159)
T ss_dssp EEEEECCTTTTSSCCEEEES
T ss_pred EEEEeCCCcCCCCCCEEEee
Confidence 36788899999999987554
No 62
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=20.29 E-value=45 Score=29.69 Aligned_cols=16 Identities=38% Similarity=1.055 Sum_probs=13.3
Q ss_pred ceeecCCCCCCCCCCC
Q psy8363 490 IQVSIPEDYPSHPPRC 505 (536)
Q Consensus 490 i~v~vP~dYP~~sp~~ 505 (536)
+.|.+|+|||..+|..
T Consensus 52 ~~i~fp~~YP~~PP~v 67 (149)
T 2r0j_A 52 LELFLPEQYPMEPPKV 67 (149)
T ss_dssp EEEECCTTTTTSCCEE
T ss_pred EEEeCCcccCCCCCee
Confidence 5678899999999875
No 63
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=20.18 E-value=45 Score=29.87 Aligned_cols=16 Identities=31% Similarity=0.982 Sum_probs=13.6
Q ss_pred ceeecCCCCCCCCCCC
Q psy8363 490 IQVSIPEDYPSHPPRC 505 (536)
Q Consensus 490 i~v~vP~dYP~~sp~~ 505 (536)
+.|.+|++||..+|..
T Consensus 56 ~~i~fp~~YP~~PP~v 71 (155)
T 1jat_A 56 LELYLPDDYPMEAPKV 71 (155)
T ss_dssp EEEECCTTTTTSCCEE
T ss_pred EEEEcCCCCCCCCCcc
Confidence 5678899999999975
No 64
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=20.13 E-value=46 Score=30.05 Aligned_cols=16 Identities=38% Similarity=0.972 Sum_probs=12.3
Q ss_pred ceeecCCCCCCCCCCC
Q psy8363 490 IQVSIPEDYPSHPPRC 505 (536)
Q Consensus 490 i~v~vP~dYP~~sp~~ 505 (536)
+.|.+|++||..+|..
T Consensus 56 ~~i~fp~~YP~~PP~v 71 (165)
T 2ucz_A 56 AKLEFPKDYPLSPPKL 71 (165)
T ss_dssp EEEECCTTTTTSCCEE
T ss_pred EEEECCccCCCCCCEE
Confidence 3567799999988875
Done!