Your job contains 1 sequence.
>psy8363
MVASPALVPSPSAPLSQSMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYRDK
IRQLSKYIEPLRRMIARAANDDIEKTTKMKKLLEILQSPNKRMPLETLLKCEHVLEKLDF
KHSSLLRDHHPLLEAVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKRVEEP
ADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYP
SHPPRCTMGHEHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQACAPTRNPT
SSPSISVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAIL
RVYIVMHQKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQA
FPPRKDLPLPVNRKRVEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLD
DRHLPCVPPIQVSIPEDYPSHPPRCTMGHEHNTTPFLTSVKNALESRIKKLPLKYS
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8363
(536 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0027592 - symbol:MED15 "Mediator complex subunit 1... 745 8.4e-74 1
UNIPROTKB|A5PKJ6 - symbol:MED15 "MED15 protein" species:9... 516 1.8e-52 2
UNIPROTKB|D4A3J8 - symbol:Med15 "Protein Med15" species:1... 515 2.3e-52 2
UNIPROTKB|F1RK85 - symbol:MED15 "Uncharacterized protein"... 510 3.7e-52 2
UNIPROTKB|I3LL78 - symbol:MED15 "Uncharacterized protein"... 510 3.7e-52 2
UNIPROTKB|F1M6N5 - symbol:Med15 "Protein Med15" species:1... 515 4.2e-52 2
UNIPROTKB|G3V1P5 - symbol:MED15 "PC2 (Positive cofactor 2... 510 9.9e-52 2
UNIPROTKB|F5GZU5 - symbol:MED15 "Mediator of RNA polymera... 510 9.9e-52 2
UNIPROTKB|J9P5D1 - symbol:MED15 "Uncharacterized protein"... 509 1.3e-51 2
RGD|1307560 - symbol:Med15 "mediator complex subunit 15" ... 515 1.7e-51 2
UNIPROTKB|F1PKU5 - symbol:MED15 "Uncharacterized protein"... 509 1.9e-51 2
UNIPROTKB|Q96RN5 - symbol:MED15 "Mediator of RNA polymera... 510 8.0e-51 2
ZFIN|ZDB-GENE-040426-2032 - symbol:med15 "mediator comple... 532 8.1e-51 1
UNIPROTKB|F1P1D8 - symbol:Gga.39500 "Uncharacterized prot... 511 1.4e-50 2
MGI|MGI:2137379 - symbol:Med15 "mediator complex subunit ... 412 7.3e-40 2
FB|FBgn0029785 - symbol:RpL35 "Ribosomal protein L35" spe... 283 2.4e-24 1
RGD|1303007 - symbol:Rpl35 "ribosomal protein L35" specie... 226 4.5e-18 1
UNIPROTKB|F1NYC0 - symbol:RPL35 "60S ribosomal protein L3... 221 1.6e-17 1
UNIPROTKB|Q98TF7 - symbol:RPL35 "60S ribosomal protein L3... 221 1.6e-17 1
UNIPROTKB|Q3MHM7 - symbol:RPL35 "60S ribosomal protein L3... 220 2.0e-17 1
UNIPROTKB|E2RPE5 - symbol:RPL35 "Uncharacterized protein"... 220 2.0e-17 1
UNIPROTKB|P42766 - symbol:RPL35 "60S ribosomal protein L3... 220 2.0e-17 1
UNIPROTKB|Q29361 - symbol:RPL35 "60S ribosomal protein L3... 220 2.0e-17 1
UNIPROTKB|E1BFM3 - symbol:Bt.62501 "Uncharacterized prote... 214 9.2e-17 1
RGD|1586622 - symbol:LOC686074 "similar to 60S ribosomal ... 213 1.2e-16 1
RGD|1589358 - symbol:LOC681918 "similar to 60S ribosomal ... 213 1.2e-16 1
UNIPROTKB|F1M6G3 - symbol:F1M6G3 "Uncharacterized protein... 205 8.8e-16 1
ZFIN|ZDB-GENE-020419-2 - symbol:rpl35 "ribosomal protein ... 202 1.9e-15 1
RGD|1563157 - symbol:RGD1563157 "similar to 60S ribosomal... 189 4.8e-14 1
TAIR|locus:2100686 - symbol:AT3G55170 species:3702 "Arabi... 182 2.8e-13 1
WB|WBGene00004449 - symbol:rpl-35 species:6239 "Caenorhab... 182 2.8e-13 1
TAIR|locus:2039802 - symbol:AT2G39390 species:3702 "Arabi... 181 3.6e-13 1
TAIR|locus:2074974 - symbol:AT3G09500 species:3702 "Arabi... 178 7.5e-13 1
UNIPROTKB|F1LUA5 - symbol:F1LUA5 "Uncharacterized protein... 169 7.1e-12 1
RGD|1564550 - symbol:RGD1564550 "similar to 60S ribosomal... 168 9.1e-12 1
POMBASE|SPCC613.05c - symbol:rpl35 "60S ribosomal protein... 156 1.8e-10 1
ASPGD|ASPL0000059648 - symbol:AN1228 species:162425 "Emer... 155 2.3e-10 1
UNIPROTKB|F2Z388 - symbol:RPL35 "60S ribosomal protein L3... 155 2.3e-10 1
UNIPROTKB|H0Y3A0 - symbol:RPL35 "60S ribosomal protein L3... 155 2.3e-10 1
RGD|1593195 - symbol:LOC367050 "similar to 60S ribosomal ... 141 7.5e-09 1
GENEDB_PFALCIPARUM|PF11_0260 - symbol:PF11_0260 "ribosoma... 130 1.2e-07 1
UNIPROTKB|Q8IIB4 - symbol:PF11_0260 "60S ribosomal protei... 130 1.2e-07 1
DICTYBASE|DDB_G0288349 - symbol:rpl35 "S60 ribosomal prot... 128 1.9e-07 1
SGD|S000002350 - symbol:RPL35A "Ribosomal 60S subunit pro... 117 2.9e-06 1
SGD|S000002295 - symbol:RPL35B "Ribosomal 60S subunit pro... 117 2.9e-06 1
UNIPROTKB|G4MSD2 - symbol:MGG_04455 "60S ribosomal protei... 102 0.00012 1
>FB|FBgn0027592 [details] [associations]
symbol:MED15 "Mediator complex subunit 15" species:7227
"Drosophila melanogaster" [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=ISS] [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA;ISS]
[GO:0016592 "mediator complex" evidence=IEA;ISS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR019087 Pfam:PF09606 EMBL:AE014134
GO:GO:0006367 GO:GO:0016592 GO:GO:0001104
GeneTree:ENSGT00670000098037 CTD:51586 KO:K15157 EMBL:AF145620
RefSeq:NP_608528.1 UniGene:Dm.3163 ProteinModelPortal:Q9Y149
SMR:Q9Y149 IntAct:Q9Y149 MINT:MINT-1559001 PaxDb:Q9Y149
PRIDE:Q9Y149 EnsemblMetazoa:FBtr0078062 GeneID:33223
KEGG:dme:Dmel_CG4184 FlyBase:FBgn0027592 eggNOG:NOG261210
InParanoid:Q9Y149 OMA:HLLDTWE OrthoDB:EOG4Z34W2 PhylomeDB:Q9Y149
ChiTaRS:MED15 GenomeRNAi:33223 NextBio:782520 Bgee:Q9Y149
Uniprot:Q9Y149
Length = 749
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 156/298 (52%), Positives = 204/298 (68%)
Query: 19 MPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYRDKIRQLSKYIEPLRRMIARA 78
M R++ SPS S+NTPGQ +SP QE+ +YR+K +QL+KYIEPL+RM+A+
Sbjct: 450 MQNSQRNIRQQ-SPSASINTPGQVTG-NSPFNPQEEALYREKYKQLTKYIEPLKRMLAKI 507
Query: 79 AND--DIEKTTKMKKLLEILQSPNKRMPLETLLKCEHVLEKLD---FKHSSLLRDHHPLL 133
+ND ++EK TKM KLLEIL +P +R+PLETLLKCE LEK+D + + +PLL
Sbjct: 508 SNDGTNVEKMTKMSKLLEILCNPTQRVPLETLLKCEKALEKMDLISYSGQQFGKSSNPLL 567
Query: 134 EAVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKRVEEPA----DDVPEVLQ 189
E ++ LQS ANHTL RTF P LE+L G I P+P R RVEE + +VP VLQ
Sbjct: 568 EVINTTLQSPVANHTLYRTFRPTLELLFGTDIT-APVPAKRPRVEEKSTSFEQEVPHVLQ 626
Query: 190 GEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTMG 249
GEIARLD +FKV LD T Q +KAI+L+C LDD+ LP VPP+ VS+PE+YP P C++
Sbjct: 627 GEIARLDTKFKVKLDTTSQINNKAIRLICCLDDKRLPSVPPVSVSVPEEYPWQAPDCSLA 686
Query: 250 H-EHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQACAPTRNPTSSPSIS 306
E++ TPFL +V+ AL +RI KLP YS+S LLDTWEM+VRQAC+P P + +S
Sbjct: 687 EQEYSATPFLQTVQQALIARISKLPKNYSLSHLLDTWEMAVRQACSPQSKPRAVCELS 744
Score = 312 (114.9 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 62/114 (54%), Positives = 80/114 (70%)
Query: 428 PLPVNRKRVEEPA----DDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRH 483
P+P R RVEE + +VP VLQGEIARLD +FKV LD T Q +KAI+L+C LDD+
Sbjct: 602 PVPAKRPRVEEKSTSFEQEVPHVLQGEIARLDTKFKVKLDTTSQINNKAIRLICCLDDKR 661
Query: 484 LPCVPPIQVSIPEDYPSHPPRCTMGH-EHNTTPFLTSVKNALESRIKKLPLKYS 536
LP VPP+ VS+PE+YP P C++ E++ TPFL +V+ AL +RI KLP YS
Sbjct: 662 LPSVPPVSVSVPEEYPWQAPDCSLAEQEYSATPFLQTVQQALIARISKLPKNYS 715
Score = 45 (20.9 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 17 QSMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYRD-KIRQLSKYIEPL 71
Q PG VG+ G PGQ SSP P Q+ + +++Q+ + + L
Sbjct: 363 QMFPGNRGGVGVG----GQ--QPGQPFMRSSPSPADAQQLQQQAQLQQMQQQQQQL 412
>UNIPROTKB|A5PKJ6 [details] [associations]
symbol:MED15 "MED15 protein" species:9913 "Bos taurus"
[GO:0019827 "stem cell maintenance" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IEA] [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA] InterPro:IPR019087 Pfam:PF09606
GO:GO:0005794 GO:GO:0016592 GO:GO:0001104
GeneTree:ENSGT00670000098037 eggNOG:NOG244847 CTD:51586 KO:K15157
OrthoDB:EOG4NGGMT OMA:QETDWRS HOGENOM:HOG000113523
EMBL:DAAA02045744 EMBL:DAAA02045745 EMBL:DAAA02045746
EMBL:DAAA02045747 EMBL:DAAA02045748 EMBL:BC142512 IPI:IPI00854427
RefSeq:NP_001092645.1 UniGene:Bt.10890 SMR:A5PKJ6 STRING:A5PKJ6
Ensembl:ENSBTAT00000029374 GeneID:618232 KEGG:bta:618232
HOVERGEN:HBG066558 InParanoid:A5PKJ6 NextBio:20901072
Uniprot:A5PKJ6
Length = 711
Score = 516 (186.7 bits), Expect = 1.8e-52, Sum P(2) = 1.8e-52
Identities = 121/282 (42%), Positives = 168/282 (59%)
Query: 29 APSPSGSLNTPGQAQPTSSPCPTQEDQVYRDKIRQLSKYIEPLRRMIARA-ANDDIEKT- 86
+P P + P + +E Q Y DK++QLSKYIEPLRRMI + N+D +K
Sbjct: 428 SPGPLNTPVNPSSVMSPAGSSQAEEQQ-YLDKLKQLSKYIEPLRRMINKIDKNEDRKKDL 486
Query: 87 TKMKKLLEILQSPNKRMPLETLLKCEHVLEKL--DFKHSSL-------LRDHH---PLLE 134
+KMK LL+IL P+KR PL+TL KCE LEKL D + + + PLL+
Sbjct: 487 SKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPPTKQQYLCQPLLD 546
Query: 135 AVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKRV--EEPADDVPEVLQGEI 192
AV ++S NH+L RTF P + + GP I P+ RKR E+ +P VLQGE+
Sbjct: 547 AVLANIRSPVFNHSLYRTFVPAMTAIHGPPIT-APVVSTRKRKFEEDERQTIPNVLQGEV 605
Query: 193 ARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPR-CTMGHE 251
ARLD +F V+LDP+ S + A+ L+C LDD+ LP VPP+++S+P DYP+ P +
Sbjct: 606 ARLDPKFLVNLDPSHCSSNGAVHLICKLDDKDLPSVPPLELSVPADYPAQSPLWINRQWQ 665
Query: 252 HNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQAC 293
++ PFL SV + SR+ +LP K+SV+ LL+TW SV QAC
Sbjct: 666 YDANPFLQSVHQCMTSRLLQLPDKHSVTALLNTWAQSVHQAC 707
Score = 244 (91.0 bits), Expect = 5.0e-20, Sum P(2) = 5.0e-20
Identities = 49/112 (43%), Positives = 72/112 (64%)
Query: 428 PLPVNRKRV--EEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLP 485
P+ RKR E+ +P VLQGE+ARLD +F V+LDP+ S + A+ L+C LDD+ LP
Sbjct: 580 PVVSTRKRKFEEDERQTIPNVLQGEVARLDPKFLVNLDPSHCSSNGAVHLICKLDDKDLP 639
Query: 486 CVPPIQVSIPEDYPSHPPR-CTMGHEHNTTPFLTSVKNALESRIKKLPLKYS 536
VPP+++S+P DYP+ P +++ PFL SV + SR+ +LP K+S
Sbjct: 640 SVPPLELSVPADYPAQSPLWINRQWQYDANPFLQSVHQCMTSRLLQLPDKHS 691
Score = 69 (29.3 bits), Expect = 5.0e-20, Sum P(2) = 5.0e-20
Identities = 32/112 (28%), Positives = 51/112 (45%)
Query: 18 SMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYR-DKIRQLSKYIEPLRRMIA 76
S P S G APSPS L +P QP+ SP + Q + L+ + P +++
Sbjct: 386 SQPNSNVSSGPAPSPSSFLPSPSP-QPSQSPVTARTPQNFSVPSPGPLNTPVNP-SSVMS 443
Query: 77 RAANDDIEKTTKMKKLLEILQ--SPNKRMPLETLLKCEHVLEKLDFKHSSLL 126
A + E+ + KL ++ + P +RM + + K E + L K SLL
Sbjct: 444 PAGSSQAEEQQYLDKLKQLSKYIEPLRRM-INKIDKNEDRKKDLS-KMKSLL 493
Score = 45 (20.9 bits), Expect = 1.8e-52, Sum P(2) = 1.8e-52
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 29 APSPSGSLNTPGQAQPTSSPCP 50
+PSP ++TP P P P
Sbjct: 358 SPSPGQQVHTPQSMPPPPQPSP 379
Score = 43 (20.2 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 15/56 (26%), Positives = 22/56 (39%)
Query: 189 QGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPP 244
Q + +L Q+ + + Q +QL + L PPIQ P P PP
Sbjct: 208 QQHLIKLHQQNQQQMQQQQLQRMAQLQLQQQQQQQALQAQPPIQQP-PLQQPPPPP 262
>UNIPROTKB|D4A3J8 [details] [associations]
symbol:Med15 "Protein Med15" species:10116 "Rattus
norvegicus" [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IEA] InterPro:IPR019087 Pfam:PF09606 RGD:1307560
GO:GO:0016592 GO:GO:0001104 IPI:IPI00392631
Ensembl:ENSRNOT00000028947 ArrayExpress:D4A3J8 Uniprot:D4A3J8
Length = 596
Score = 515 (186.3 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 121/282 (42%), Positives = 170/282 (60%)
Query: 29 APSPSGSLNTPGQAQPTSSPCPTQEDQVYRDKIRQLSKYIEPLRRMIARA-ANDDIEKT- 86
+P P + P + +E Q Y DK++QLSKYIEPLRRMI + N+D +K
Sbjct: 313 SPGPLNTPVNPSSVMSPAGSSQAEEQQ-YLDKLKQLSKYIEPLRRMINKIDKNEDRKKDL 371
Query: 87 TKMKKLLEILQSPNKRMPLETLLKCEHVLEKL--DFKHSS-----LL----RDH-HPLLE 134
+KMK LL+IL P+KR PL+TL KCE LEKL D + +L +D PLL+
Sbjct: 372 SKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVLPTKQQDLCQPLLD 431
Query: 135 AVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKR--VEEPADDVPEVLQGEI 192
AV ++S NH+L RTF P + + GP I P+ +RKR E+ +P VLQGE+
Sbjct: 432 AVLANIRSPVFNHSLYRTFVPAMMAIHGPPIVS-PVVCSRKRRFEEDERQSIPNVLQGEV 490
Query: 193 ARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTMGH-E 251
ARLD +F V+LDP+ S + + L+C LDD+ LP VPP+++S+P DYP+ P +
Sbjct: 491 ARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYPAQSPMWVDRQWQ 550
Query: 252 HNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQAC 293
++ PFL SV + SR+ +LP K+SV+ LL+TW S+ QAC
Sbjct: 551 YDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSIHQAC 592
Score = 243 (90.6 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 48/112 (42%), Positives = 72/112 (64%)
Query: 428 PLPVNRKR--VEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLP 485
P+ +RKR E+ +P VLQGE+ARLD +F V+LDP+ S + + L+C LDD+ LP
Sbjct: 465 PVVCSRKRRFEEDERQSIPNVLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLP 524
Query: 486 CVPPIQVSIPEDYPSHPPRCTMGH-EHNTTPFLTSVKNALESRIKKLPLKYS 536
VPP+++S+P DYP+ P +++ PFL SV + SR+ +LP K+S
Sbjct: 525 SVPPLELSVPADYPAQSPMWVDRQWQYDANPFLQSVHRCMTSRLLQLPDKHS 576
Score = 69 (29.3 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 32/112 (28%), Positives = 51/112 (45%)
Query: 18 SMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYR-DKIRQLSKYIEPLRRMIA 76
S P S G APSPS L +P QP+ SP + Q + L+ + P +++
Sbjct: 271 SQPNSNVSSGPAPSPSSFLPSPSP-QPSQSPVTARTPQNFSVPSPGPLNTPVNP-SSVMS 328
Query: 77 RAANDDIEKTTKMKKLLEILQ--SPNKRMPLETLLKCEHVLEKLDFKHSSLL 126
A + E+ + KL ++ + P +RM + + K E + L K SLL
Sbjct: 329 PAGSSQAEEQQYLDKLKQLSKYIEPLRRM-INKIDKNEDRKKDLS-KMKSLL 378
Score = 45 (20.9 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 29 APSPSGSLNTPGQAQPTSSPCPTQEDQ 55
+PSP + TP P P P Q
Sbjct: 246 SPSPGQQVQTPQSMPPPPQPSPQPGSQ 272
>UNIPROTKB|F1RK85 [details] [associations]
symbol:MED15 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0016592 "mediator
complex" evidence=IEA] [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=IEA] InterPro:IPR019087 Pfam:PF09606
GO:GO:0005794 GO:GO:0016592 GO:GO:0001104
GeneTree:ENSGT00670000098037 EMBL:CU607059
Ensembl:ENSSSCT00000011068 Uniprot:F1RK85
Length = 710
Score = 510 (184.6 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
Identities = 119/282 (42%), Positives = 167/282 (59%)
Query: 29 APSPSGSLNTPGQAQPTSSPCPTQEDQVYRDKIRQLSKYIEPLRRMIARA-ANDDIEKT- 86
+P P + P + +E Q Y DK++QLSKYIEPLRRMI + N+D +K
Sbjct: 427 SPGPLNTPVNPSSVMSPAGSSQAEEQQ-YLDKLKQLSKYIEPLRRMINKIDKNEDRKKDL 485
Query: 87 TKMKKLLEILQSPNKRMPLETLLKCEHVLEKL--DFKHSSL-------LRDHH---PLLE 134
+KMK LL+IL P+KR PL+TL KCE LEKL D + + + PLL+
Sbjct: 486 SKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPPTKQQYLCQPLLD 545
Query: 135 AVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKR--VEEPADDVPEVLQGEI 192
AV ++S NH+L RTF P + + GP I P+ RKR E+ +P VLQGE+
Sbjct: 546 AVLANIRSPVFNHSLYRTFVPAMTAIHGPPIT-APVVCARKRRFEEDERQSIPNVLQGEV 604
Query: 193 ARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPR-CTMGHE 251
ARLD +F V+LDP+ S + + L+C LDD+ LP VPP+++S+P DYP+ P +
Sbjct: 605 ARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYPAQSPLWIDRQWQ 664
Query: 252 HNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQAC 293
++ PFL SV + SR+ +LP K+SV+ LL+TW S+ QAC
Sbjct: 665 YDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSIHQAC 706
Score = 239 (89.2 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 48/112 (42%), Positives = 71/112 (63%)
Query: 428 PLPVNRKR--VEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLP 485
P+ RKR E+ +P VLQGE+ARLD +F V+LDP+ S + + L+C LDD+ LP
Sbjct: 579 PVVCARKRRFEEDERQSIPNVLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLP 638
Query: 486 CVPPIQVSIPEDYPSHPPR-CTMGHEHNTTPFLTSVKNALESRIKKLPLKYS 536
VPP+++S+P DYP+ P +++ PFL SV + SR+ +LP K+S
Sbjct: 639 SVPPLELSVPADYPAQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHS 690
Score = 65 (27.9 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 31/112 (27%), Positives = 50/112 (44%)
Query: 18 SMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYR-DKIRQLSKYIEPLRRMIA 76
S P S G PSPS L +P QP+ SP + Q + L+ + P +++
Sbjct: 385 SQPNSNVSSGPTPSPSSFLPSPSP-QPSQSPVTARTPQNFSVPSPGPLNTPVNP-SSVMS 442
Query: 77 RAANDDIEKTTKMKKLLEILQ--SPNKRMPLETLLKCEHVLEKLDFKHSSLL 126
A + E+ + KL ++ + P +RM + + K E + L K SLL
Sbjct: 443 PAGSSQAEEQQYLDKLKQLSKYIEPLRRM-INKIDKNEDRKKDLS-KMKSLL 492
Score = 48 (22.0 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 29 APSPSGSLNTPGQAQPTSSPCP 50
+PSPS + TP P P P
Sbjct: 357 SPSPSQQVQTPQSMPPPPQPSP 378
Score = 39 (18.8 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 17 QSMPGQMRSVGMAPSPSGSLNTPGQAQPTSSP 48
QSMP + PS N+ + PT SP
Sbjct: 368 QSMPPPPQPSPQPGPPSSQPNSNVSSGPTPSP 399
Score = 37 (18.1 bits), Expect = 5.4e-51, Sum P(2) = 5.4e-51
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 30 PSPSGSLNTPGQAQPTSSPCP 50
P P + N P Q P S P
Sbjct: 265 PQPPVAQNQPSQLPPQSQTQP 285
Score = 37 (18.1 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 188 LQGEIARLDQRFKVSLDPTQQ 208
LQ + + + Q+F+V++ QQ
Sbjct: 155 LQAQQSAMQQQFQVAVQQQQQ 175
>UNIPROTKB|I3LL78 [details] [associations]
symbol:MED15 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016592 "mediator complex" evidence=IEA] [GO:0001104
"RNA polymerase II transcription cofactor activity" evidence=IEA]
InterPro:IPR019087 Pfam:PF09606 GO:GO:0016592 GO:GO:0001104
GeneTree:ENSGT00670000098037 OMA:QETDWRS EMBL:CU607059
Ensembl:ENSSSCT00000028715 Uniprot:I3LL78
Length = 710
Score = 510 (184.6 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
Identities = 119/282 (42%), Positives = 167/282 (59%)
Query: 29 APSPSGSLNTPGQAQPTSSPCPTQEDQVYRDKIRQLSKYIEPLRRMIARA-ANDDIEKT- 86
+P P + P + +E Q Y DK++QLSKYIEPLRRMI + N+D +K
Sbjct: 427 SPGPLNTPVNPSSVMSPAGSSQAEEQQ-YLDKLKQLSKYIEPLRRMINKIDKNEDRKKDL 485
Query: 87 TKMKKLLEILQSPNKRMPLETLLKCEHVLEKL--DFKHSSL-------LRDHH---PLLE 134
+KMK LL+IL P+KR PL+TL KCE LEKL D + + + PLL+
Sbjct: 486 SKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPPTKQQYLCQPLLD 545
Query: 135 AVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKR--VEEPADDVPEVLQGEI 192
AV ++S NH+L RTF P + + GP I P+ RKR E+ +P VLQGE+
Sbjct: 546 AVLANIRSPVFNHSLYRTFVPAMTAIHGPPIT-APVVCARKRRFEEDERQSIPNVLQGEV 604
Query: 193 ARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPR-CTMGHE 251
ARLD +F V+LDP+ S + + L+C LDD+ LP VPP+++S+P DYP+ P +
Sbjct: 605 ARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYPAQSPLWIDRQWQ 664
Query: 252 HNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQAC 293
++ PFL SV + SR+ +LP K+SV+ LL+TW S+ QAC
Sbjct: 665 YDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSIHQAC 706
Score = 239 (89.2 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 48/112 (42%), Positives = 71/112 (63%)
Query: 428 PLPVNRKR--VEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLP 485
P+ RKR E+ +P VLQGE+ARLD +F V+LDP+ S + + L+C LDD+ LP
Sbjct: 579 PVVCARKRRFEEDERQSIPNVLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLP 638
Query: 486 CVPPIQVSIPEDYPSHPPR-CTMGHEHNTTPFLTSVKNALESRIKKLPLKYS 536
VPP+++S+P DYP+ P +++ PFL SV + SR+ +LP K+S
Sbjct: 639 SVPPLELSVPADYPAQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHS 690
Score = 65 (27.9 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 31/112 (27%), Positives = 50/112 (44%)
Query: 18 SMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYR-DKIRQLSKYIEPLRRMIA 76
S P S G PSPS L +P QP+ SP + Q + L+ + P +++
Sbjct: 385 SQPNSNVSSGPTPSPSSFLPSPSP-QPSQSPVTARTPQNFSVPSPGPLNTPVNP-SSVMS 442
Query: 77 RAANDDIEKTTKMKKLLEILQ--SPNKRMPLETLLKCEHVLEKLDFKHSSLL 126
A + E+ + KL ++ + P +RM + + K E + L K SLL
Sbjct: 443 PAGSSQAEEQQYLDKLKQLSKYIEPLRRM-INKIDKNEDRKKDLS-KMKSLL 492
Score = 48 (22.0 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 29 APSPSGSLNTPGQAQPTSSPCP 50
+PSPS + TP P P P
Sbjct: 357 SPSPSQQVQTPQSMPPPPQPSP 378
Score = 39 (18.8 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 17 QSMPGQMRSVGMAPSPSGSLNTPGQAQPTSSP 48
QSMP + PS N+ + PT SP
Sbjct: 368 QSMPPPPQPSPQPGPPSSQPNSNVSSGPTPSP 399
Score = 37 (18.1 bits), Expect = 5.4e-51, Sum P(2) = 5.4e-51
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 30 PSPSGSLNTPGQAQPTSSPCP 50
P P + N P Q P S P
Sbjct: 242 PQPPVAQNQPSQLPPQSQTQP 262
Score = 37 (18.1 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 188 LQGEIARLDQRFKVSLDPTQQ 208
LQ + + + Q+F+V++ QQ
Sbjct: 153 LQAQQSAMQQQFQVAVQQQQQ 173
>UNIPROTKB|F1M6N5 [details] [associations]
symbol:Med15 "Protein Med15" species:10116 "Rattus
norvegicus" [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IEA] InterPro:IPR019087 Pfam:PF09606 RGD:1307560
GO:GO:0016592 GO:GO:0001104 IPI:IPI00950512
Ensembl:ENSRNOT00000064480 ArrayExpress:F1M6N5 Uniprot:F1M6N5
Length = 744
Score = 515 (186.3 bits), Expect = 4.2e-52, Sum P(2) = 4.2e-52
Identities = 121/282 (42%), Positives = 170/282 (60%)
Query: 29 APSPSGSLNTPGQAQPTSSPCPTQEDQVYRDKIRQLSKYIEPLRRMIARA-ANDDIEKT- 86
+P P + P + +E Q Y DK++QLSKYIEPLRRMI + N+D +K
Sbjct: 461 SPGPLNTPVNPSSVMSPAGSSQAEEQQ-YLDKLKQLSKYIEPLRRMINKIDKNEDRKKDL 519
Query: 87 TKMKKLLEILQSPNKRMPLETLLKCEHVLEKL--DFKHSS-----LL----RDH-HPLLE 134
+KMK LL+IL P+KR PL+TL KCE LEKL D + +L +D PLL+
Sbjct: 520 SKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVLPTKQQDLCQPLLD 579
Query: 135 AVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKR--VEEPADDVPEVLQGEI 192
AV ++S NH+L RTF P + + GP I P+ +RKR E+ +P VLQGE+
Sbjct: 580 AVLANIRSPVFNHSLYRTFVPAMMAIHGPPIVS-PVVCSRKRRFEEDERQSIPNVLQGEV 638
Query: 193 ARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTMGH-E 251
ARLD +F V+LDP+ S + + L+C LDD+ LP VPP+++S+P DYP+ P +
Sbjct: 639 ARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYPAQSPMWVDRQWQ 698
Query: 252 HNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQAC 293
++ PFL SV + SR+ +LP K+SV+ LL+TW S+ QAC
Sbjct: 699 YDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSIHQAC 740
Score = 243 (90.6 bits), Expect = 7.7e-20, Sum P(2) = 7.7e-20
Identities = 48/112 (42%), Positives = 72/112 (64%)
Query: 428 PLPVNRKR--VEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLP 485
P+ +RKR E+ +P VLQGE+ARLD +F V+LDP+ S + + L+C LDD+ LP
Sbjct: 613 PVVCSRKRRFEEDERQSIPNVLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLP 672
Query: 486 CVPPIQVSIPEDYPSHPPRCTMGH-EHNTTPFLTSVKNALESRIKKLPLKYS 536
VPP+++S+P DYP+ P +++ PFL SV + SR+ +LP K+S
Sbjct: 673 SVPPLELSVPADYPAQSPMWVDRQWQYDANPFLQSVHRCMTSRLLQLPDKHS 724
Score = 69 (29.3 bits), Expect = 7.7e-20, Sum P(2) = 7.7e-20
Identities = 32/112 (28%), Positives = 51/112 (45%)
Query: 18 SMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYR-DKIRQLSKYIEPLRRMIA 76
S P S G APSPS L +P QP+ SP + Q + L+ + P +++
Sbjct: 419 SQPNSNVSSGPAPSPSSFLPSPSP-QPSQSPVTARTPQNFSVPSPGPLNTPVNP-SSVMS 476
Query: 77 RAANDDIEKTTKMKKLLEILQ--SPNKRMPLETLLKCEHVLEKLDFKHSSLL 126
A + E+ + KL ++ + P +RM + + K E + L K SLL
Sbjct: 477 PAGSSQAEEQQYLDKLKQLSKYIEPLRRM-INKIDKNEDRKKDLS-KMKSLL 526
Score = 45 (20.9 bits), Expect = 4.2e-52, Sum P(2) = 4.2e-52
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 29 APSPSGSLNTPGQAQPTSSPCPTQEDQ 55
+PSP + TP P P P Q
Sbjct: 394 SPSPGQQVQTPQSMPPPPQPSPQPGSQ 420
Score = 38 (18.4 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 278 VSQLLDTWEMSVRQACAPTRNPTSSPSISVKV 309
+++ L M VR PT ++ PS S+ +
Sbjct: 345 IAEALAQGGMHVRARFPPTSTMSAGPSSSISL 376
>UNIPROTKB|G3V1P5 [details] [associations]
symbol:MED15 "PC2 (Positive cofactor 2, multiprotein
complex) glutamine/Q-rich-associated protein, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR019087 Pfam:PF09606 GO:GO:0005634 GO:GO:0005794
EMBL:CH471176 GO:GO:0016592 GO:GO:0001104 EMBL:AC007731
ChiTaRS:MED15 UniGene:Hs.517421 HGNC:HGNC:14248 EMBL:AC007050
EMBL:AC004033 EMBL:AC005500 SMR:G3V1P5 Ensembl:ENST00000406969
Ensembl:ENST00000541476 Uniprot:G3V1P5
Length = 722
Score = 510 (184.6 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
Identities = 119/282 (42%), Positives = 167/282 (59%)
Query: 29 APSPSGSLNTPGQAQPTSSPCPTQEDQVYRDKIRQLSKYIEPLRRMIARA-ANDDIEKT- 86
+P P + P + +E Q Y DK++QLSKYIEPLRRMI + N+D +K
Sbjct: 439 SPGPLNTPVNPSSVMSPAGSSQAEEQQ-YLDKLKQLSKYIEPLRRMINKIDKNEDRKKDL 497
Query: 87 TKMKKLLEILQSPNKRMPLETLLKCEHVLEKL--DFKHSSL-------LRDHH---PLLE 134
+KMK LL+IL P+KR PL+TL KCE LEKL D + + + PLL+
Sbjct: 498 SKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPPTKQQYLCQPLLD 557
Query: 135 AVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKR--VEEPADDVPEVLQGEI 192
AV ++S NH+L RTF P + + GP I P+ RKR ++ +P VLQGE+
Sbjct: 558 AVLANIRSPVFNHSLYRTFVPAMTAIHGPPIT-APVVCTRKRRLEDDERQSIPSVLQGEV 616
Query: 193 ARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPR-CTMGHE 251
ARLD +F V+LDP+ S + + L+C LDD+ LP VPP+++S+P DYP+ P +
Sbjct: 617 ARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYPAQSPLWIDRQWQ 676
Query: 252 HNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQAC 293
++ PFL SV + SR+ +LP K+SV+ LL+TW SV QAC
Sbjct: 677 YDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQAC 718
Score = 238 (88.8 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 47/112 (41%), Positives = 71/112 (63%)
Query: 428 PLPVNRKR--VEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLP 485
P+ RKR ++ +P VLQGE+ARLD +F V+LDP+ S + + L+C LDD+ LP
Sbjct: 591 PVVCTRKRRLEDDERQSIPSVLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLP 650
Query: 486 CVPPIQVSIPEDYPSHPPR-CTMGHEHNTTPFLTSVKNALESRIKKLPLKYS 536
VPP+++S+P DYP+ P +++ PFL SV + SR+ +LP K+S
Sbjct: 651 SVPPLELSVPADYPAQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHS 702
Score = 69 (29.3 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 32/112 (28%), Positives = 51/112 (45%)
Query: 18 SMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYR-DKIRQLSKYIEPLRRMIA 76
S P S G APSPS L +P QP+ SP + Q + L+ + P +++
Sbjct: 397 SQPNSNVSSGPAPSPSSFLPSPSP-QPSQSPVTARTPQNFSVPSPGPLNTPVNP-SSVMS 454
Query: 77 RAANDDIEKTTKMKKLLEILQ--SPNKRMPLETLLKCEHVLEKLDFKHSSLL 126
A + E+ + KL ++ + P +RM + + K E + L K SLL
Sbjct: 455 PAGSSQAEEQQYLDKLKQLSKYIEPLRRM-INKIDKNEDRKKDLS-KMKSLL 504
Score = 44 (20.5 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 29 APSPSGSLNTPGQAQPTSSPCP 50
+PSP + TP P P P
Sbjct: 369 SPSPGQQVQTPQSMPPPPQPSP 390
Score = 38 (18.4 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 19/110 (17%), Positives = 49/110 (44%)
Query: 21 GQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYRDKIRQLSKYIEPLRRMIARAAN 80
GQ S+ P P S P S+ P + Q+ + ++Q + + ++ +AA
Sbjct: 94 GQPMSLSGQPPPGTSGMAPHSMAVVSTATPQTQLQLQQVALQQQQQQQQFQQQQ--QAAL 151
Query: 81 DDIEKTTKMKKLLEILQSPNKRMPLETLLKCEHVLEKLDFKHSSLLRDHH 130
++ + ++ + QS ++ + +++ + L++ + L++ HH
Sbjct: 152 QQ-QQQQQQQQQFQAQQSAMQQQ-FQAVVQQQQQLQQQQQQQQHLIKLHH 199
>UNIPROTKB|F5GZU5 [details] [associations]
symbol:MED15 "Mediator of RNA polymerase II transcription
subunit 15" species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] InterPro:IPR019087 Pfam:PF09606
GO:GO:0016592 GO:GO:0001104 EMBL:AC007731 ChiTaRS:MED15
IPI:IPI00554734 HGNC:HGNC:14248 EMBL:AC007050 EMBL:AC004033
EMBL:AC005500 ProteinModelPortal:F5GZU5 SMR:F5GZU5
Ensembl:ENST00000425759 ArrayExpress:F5GZU5 Bgee:F5GZU5
Uniprot:F5GZU5
Length = 637
Score = 510 (184.6 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
Identities = 119/282 (42%), Positives = 167/282 (59%)
Query: 29 APSPSGSLNTPGQAQPTSSPCPTQEDQVYRDKIRQLSKYIEPLRRMIARA-ANDDIEKT- 86
+P P + P + +E Q Y DK++QLSKYIEPLRRMI + N+D +K
Sbjct: 354 SPGPLNTPVNPSSVMSPAGSSQAEEQQ-YLDKLKQLSKYIEPLRRMINKIDKNEDRKKDL 412
Query: 87 TKMKKLLEILQSPNKRMPLETLLKCEHVLEKL--DFKHSSL-------LRDHH---PLLE 134
+KMK LL+IL P+KR PL+TL KCE LEKL D + + + PLL+
Sbjct: 413 SKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPPTKQQYLCQPLLD 472
Query: 135 AVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKR--VEEPADDVPEVLQGEI 192
AV ++S NH+L RTF P + + GP I P+ RKR ++ +P VLQGE+
Sbjct: 473 AVLANIRSPVFNHSLYRTFVPAMTAIHGPPIT-APVVCTRKRRLEDDERQSIPSVLQGEV 531
Query: 193 ARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPR-CTMGHE 251
ARLD +F V+LDP+ S + + L+C LDD+ LP VPP+++S+P DYP+ P +
Sbjct: 532 ARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYPAQSPLWIDRQWQ 591
Query: 252 HNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQAC 293
++ PFL SV + SR+ +LP K+SV+ LL+TW SV QAC
Sbjct: 592 YDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQAC 633
Score = 238 (88.8 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 47/112 (41%), Positives = 71/112 (63%)
Query: 428 PLPVNRKR--VEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLP 485
P+ RKR ++ +P VLQGE+ARLD +F V+LDP+ S + + L+C LDD+ LP
Sbjct: 506 PVVCTRKRRLEDDERQSIPSVLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLP 565
Query: 486 CVPPIQVSIPEDYPSHPPR-CTMGHEHNTTPFLTSVKNALESRIKKLPLKYS 536
VPP+++S+P DYP+ P +++ PFL SV + SR+ +LP K+S
Sbjct: 566 SVPPLELSVPADYPAQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHS 617
Score = 69 (29.3 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 32/112 (28%), Positives = 51/112 (45%)
Query: 18 SMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYR-DKIRQLSKYIEPLRRMIA 76
S P S G APSPS L +P QP+ SP + Q + L+ + P +++
Sbjct: 312 SQPNSNVSSGPAPSPSSFLPSPSP-QPSQSPVTARTPQNFSVPSPGPLNTPVNP-SSVMS 369
Query: 77 RAANDDIEKTTKMKKLLEILQ--SPNKRMPLETLLKCEHVLEKLDFKHSSLL 126
A + E+ + KL ++ + P +RM + + K E + L K SLL
Sbjct: 370 PAGSSQAEEQQYLDKLKQLSKYIEPLRRM-INKIDKNEDRKKDLS-KMKSLL 419
Score = 44 (20.5 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 29 APSPSGSLNTPGQAQPTSSPCP 50
+PSP + TP P P P
Sbjct: 284 SPSPGQQVQTPQSMPPPPQPSP 305
>UNIPROTKB|J9P5D1 [details] [associations]
symbol:MED15 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016592 "mediator complex" evidence=IEA]
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] InterPro:IPR019087 Pfam:PF09606 GO:GO:0016592
GO:GO:0001104 GeneTree:ENSGT00670000098037 EMBL:AAEX03014886
EMBL:AAEX03014885 Ensembl:ENSCAFT00000043769 Uniprot:J9P5D1
Length = 553
Score = 509 (184.2 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 118/282 (41%), Positives = 167/282 (59%)
Query: 29 APSPSGSLNTPGQAQPTSSPCPTQEDQVYRDKIRQLSKYIEPLRRMIARA-ANDDIEKT- 86
+P P + P + +E Q Y DK++QLSKYIEPLRRMI + N+D +K
Sbjct: 270 SPGPLNTPVNPSSVMSPAGSSQAEEQQ-YLDKLKQLSKYIEPLRRMINKIDKNEDRKKDL 328
Query: 87 TKMKKLLEILQSPNKRMPLETLLKCEHVLEKL--DFKHSSL-------LRDHH---PLLE 134
+KMK LL+IL P+KR PL+TL KCE LEKL D + + + PLL+
Sbjct: 329 SKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPPTKQQYLCQPLLD 388
Query: 135 AVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKR--VEEPADDVPEVLQGEI 192
AV ++S NH+L RTF P + + GP I P+ RKR ++ +P VLQGE+
Sbjct: 389 AVLANIRSPVFNHSLYRTFVPAMTAIHGPPIT-APVVCTRKRRFEDDERQSIPNVLQGEV 447
Query: 193 ARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPR-CTMGHE 251
ARLD +F V+LDP+ S + + L+C LDD+ LP VPP+++S+P DYP+ P +
Sbjct: 448 ARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYPAQSPLWIDRQWQ 507
Query: 252 HNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQAC 293
++ PFL SV + SR+ +LP K+SV+ LL+TW S+ QAC
Sbjct: 508 YDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSIHQAC 549
Score = 238 (88.8 bits), Expect = 8.7e-20, Sum P(2) = 8.7e-20
Identities = 47/112 (41%), Positives = 71/112 (63%)
Query: 428 PLPVNRKR--VEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLP 485
P+ RKR ++ +P VLQGE+ARLD +F V+LDP+ S + + L+C LDD+ LP
Sbjct: 422 PVVCTRKRRFEDDERQSIPNVLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLP 481
Query: 486 CVPPIQVSIPEDYPSHPPR-CTMGHEHNTTPFLTSVKNALESRIKKLPLKYS 536
VPP+++S+P DYP+ P +++ PFL SV + SR+ +LP K+S
Sbjct: 482 SVPPLELSVPADYPAQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHS 533
Score = 69 (29.3 bits), Expect = 8.7e-20, Sum P(2) = 8.7e-20
Identities = 32/112 (28%), Positives = 51/112 (45%)
Query: 18 SMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYR-DKIRQLSKYIEPLRRMIA 76
S P S G APSPS L +P QP+ SP + Q + L+ + P +++
Sbjct: 228 SQPNSNVSSGPAPSPSSFLPSPSP-QPSQSPVTARTPQNFSVPSPGPLNTPVNP-SSVMS 285
Query: 77 RAANDDIEKTTKMKKLLEILQ--SPNKRMPLETLLKCEHVLEKLDFKHSSLL 126
A + E+ + KL ++ + P +RM + + K E + L K SLL
Sbjct: 286 PAGSSQAEEQQYLDKLKQLSKYIEPLRRM-INKIDKNEDRKKDLS-KMKSLL 335
Score = 44 (20.5 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 29 APSPSGSLNTPGQAQPTSSPCP 50
+PSP + TP P P P
Sbjct: 200 SPSPGQQVQTPQSMPPPPQPSP 221
Score = 38 (18.4 bits), Expect = 5.4e-51, Sum P(2) = 5.4e-51
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 17 QSMPGQMRSVGMAPSPSGSLNTPGQAQPTSSP 48
Q+ P + P P S P Q QP P
Sbjct: 64 QAQPPLQQPPMQQPQPPPSQALPQQLQPMHHP 95
>RGD|1307560 [details] [associations]
symbol:Med15 "mediator complex subunit 15" species:10116 "Rattus
norvegicus" [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0016592 "mediator complex" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA;ISO] InterPro:IPR019087 Pfam:PF09606
RGD:1307560 GO:GO:0016592 GO:GO:0001104 EMBL:CH473999
GeneTree:ENSGT00670000098037 CTD:51586 KO:K15157
RefSeq:NP_001101795.1 UniGene:Rn.6342 Ensembl:ENSRNOT00000002568
GeneID:360743 KEGG:rno:360743 NextBio:673959 Uniprot:G3V684
Length = 790
Score = 515 (186.3 bits), Expect = 1.7e-51, Sum P(2) = 1.7e-51
Identities = 121/282 (42%), Positives = 170/282 (60%)
Query: 29 APSPSGSLNTPGQAQPTSSPCPTQEDQVYRDKIRQLSKYIEPLRRMIARA-ANDDIEKT- 86
+P P + P + +E Q Y DK++QLSKYIEPLRRMI + N+D +K
Sbjct: 507 SPGPLNTPVNPSSVMSPAGSSQAEEQQ-YLDKLKQLSKYIEPLRRMINKIDKNEDRKKDL 565
Query: 87 TKMKKLLEILQSPNKRMPLETLLKCEHVLEKL--DFKHSS-----LL----RDH-HPLLE 134
+KMK LL+IL P+KR PL+TL KCE LEKL D + +L +D PLL+
Sbjct: 566 SKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVLPTKQQDLCQPLLD 625
Query: 135 AVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKR--VEEPADDVPEVLQGEI 192
AV ++S NH+L RTF P + + GP I P+ +RKR E+ +P VLQGE+
Sbjct: 626 AVLANIRSPVFNHSLYRTFVPAMMAIHGPPIVS-PVVCSRKRRFEEDERQSIPNVLQGEV 684
Query: 193 ARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTMGH-E 251
ARLD +F V+LDP+ S + + L+C LDD+ LP VPP+++S+P DYP+ P +
Sbjct: 685 ARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYPAQSPMWVDRQWQ 744
Query: 252 HNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQAC 293
++ PFL SV + SR+ +LP K+SV+ LL+TW S+ QAC
Sbjct: 745 YDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSIHQAC 786
Score = 243 (90.6 bits), Expect = 9.5e-20, Sum P(2) = 9.5e-20
Identities = 48/112 (42%), Positives = 72/112 (64%)
Query: 428 PLPVNRKR--VEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLP 485
P+ +RKR E+ +P VLQGE+ARLD +F V+LDP+ S + + L+C LDD+ LP
Sbjct: 659 PVVCSRKRRFEEDERQSIPNVLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLP 718
Query: 486 CVPPIQVSIPEDYPSHPPRCTMGH-EHNTTPFLTSVKNALESRIKKLPLKYS 536
VPP+++S+P DYP+ P +++ PFL SV + SR+ +LP K+S
Sbjct: 719 SVPPLELSVPADYPAQSPMWVDRQWQYDANPFLQSVHRCMTSRLLQLPDKHS 770
Score = 69 (29.3 bits), Expect = 9.5e-20, Sum P(2) = 9.5e-20
Identities = 32/112 (28%), Positives = 51/112 (45%)
Query: 18 SMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYR-DKIRQLSKYIEPLRRMIA 76
S P S G APSPS L +P QP+ SP + Q + L+ + P +++
Sbjct: 465 SQPNSNVSSGPAPSPSSFLPSPSP-QPSQSPVTARTPQNFSVPSPGPLNTPVNP-SSVMS 522
Query: 77 RAANDDIEKTTKMKKLLEILQ--SPNKRMPLETLLKCEHVLEKLDFKHSSLL 126
A + E+ + KL ++ + P +RM + + K E + L K SLL
Sbjct: 523 PAGSSQAEEQQYLDKLKQLSKYIEPLRRM-INKIDKNEDRKKDLS-KMKSLL 572
Score = 45 (20.9 bits), Expect = 1.7e-51, Sum P(2) = 1.7e-51
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 29 APSPSGSLNTPGQAQPTSSPCPTQEDQ 55
+PSP + TP P P P Q
Sbjct: 440 SPSPGQQVQTPQSMPPPPQPSPQPGSQ 466
Score = 38 (18.4 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 278 VSQLLDTWEMSVRQACAPTRNPTSSPSISVKV 309
+++ L M VR PT ++ PS S+ +
Sbjct: 391 IAEALAQGGMHVRARFPPTSTMSAGPSSSISL 422
>UNIPROTKB|F1PKU5 [details] [associations]
symbol:MED15 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016592 "mediator complex" evidence=IEA]
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] InterPro:IPR019087 Pfam:PF09606 GO:GO:0016592
GO:GO:0001104 GeneTree:ENSGT00670000098037 OMA:QETDWRS
EMBL:AAEX03014886 EMBL:AAEX03014885 Ensembl:ENSCAFT00000023707
Uniprot:F1PKU5
Length = 731
Score = 509 (184.2 bits), Expect = 1.9e-51, Sum P(2) = 1.9e-51
Identities = 118/282 (41%), Positives = 167/282 (59%)
Query: 29 APSPSGSLNTPGQAQPTSSPCPTQEDQVYRDKIRQLSKYIEPLRRMIARA-ANDDIEKT- 86
+P P + P + +E Q Y DK++QLSKYIEPLRRMI + N+D +K
Sbjct: 448 SPGPLNTPVNPSSVMSPAGSSQAEEQQ-YLDKLKQLSKYIEPLRRMINKIDKNEDRKKDL 506
Query: 87 TKMKKLLEILQSPNKRMPLETLLKCEHVLEKL--DFKHSSL-------LRDHH---PLLE 134
+KMK LL+IL P+KR PL+TL KCE LEKL D + + + PLL+
Sbjct: 507 SKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPPTKQQYLCQPLLD 566
Query: 135 AVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKR--VEEPADDVPEVLQGEI 192
AV ++S NH+L RTF P + + GP I P+ RKR ++ +P VLQGE+
Sbjct: 567 AVLANIRSPVFNHSLYRTFVPAMTAIHGPPIT-APVVCTRKRRFEDDERQSIPNVLQGEV 625
Query: 193 ARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPR-CTMGHE 251
ARLD +F V+LDP+ S + + L+C LDD+ LP VPP+++S+P DYP+ P +
Sbjct: 626 ARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYPAQSPLWIDRQWQ 685
Query: 252 HNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQAC 293
++ PFL SV + SR+ +LP K+SV+ LL+TW S+ QAC
Sbjct: 686 YDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSIHQAC 727
Score = 238 (88.8 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 47/112 (41%), Positives = 71/112 (63%)
Query: 428 PLPVNRKR--VEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLP 485
P+ RKR ++ +P VLQGE+ARLD +F V+LDP+ S + + L+C LDD+ LP
Sbjct: 600 PVVCTRKRRFEDDERQSIPNVLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLP 659
Query: 486 CVPPIQVSIPEDYPSHPPR-CTMGHEHNTTPFLTSVKNALESRIKKLPLKYS 536
VPP+++S+P DYP+ P +++ PFL SV + SR+ +LP K+S
Sbjct: 660 SVPPLELSVPADYPAQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHS 711
Score = 69 (29.3 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 32/112 (28%), Positives = 51/112 (45%)
Query: 18 SMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYR-DKIRQLSKYIEPLRRMIA 76
S P S G APSPS L +P QP+ SP + Q + L+ + P +++
Sbjct: 406 SQPNSNVSSGPAPSPSSFLPSPSP-QPSQSPVTARTPQNFSVPSPGPLNTPVNP-SSVMS 463
Query: 77 RAANDDIEKTTKMKKLLEILQ--SPNKRMPLETLLKCEHVLEKLDFKHSSLL 126
A + E+ + KL ++ + P +RM + + K E + L K SLL
Sbjct: 464 PAGSSQAEEQQYLDKLKQLSKYIEPLRRM-INKIDKNEDRKKDLS-KMKSLL 513
Score = 44 (20.5 bits), Expect = 1.9e-51, Sum P(2) = 1.9e-51
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 29 APSPSGSLNTPGQAQPTSSPCP 50
+PSP + TP P P P
Sbjct: 378 SPSPGQQVQTPQSMPPPPQPSP 399
Score = 38 (18.4 bits), Expect = 8.1e-51, Sum P(2) = 8.1e-51
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 17 QSMPGQMRSVGMAPSPSGSLNTPGQAQPTSSP 48
Q+ P + P P S P Q QP P
Sbjct: 242 QAQPPLQQPPMQQPQPPPSQALPQQLQPMHHP 273
>UNIPROTKB|Q96RN5 [details] [associations]
symbol:MED15 "Mediator of RNA polymerase II transcription
subunit 15" species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR019087 Pfam:PF09606
GO:GO:0005794 Reactome:REACT_111045 GO:GO:0005654 EMBL:CH471176
Pathway_Interaction_DB:smad2_3nuclearpathway GO:GO:0006367
GO:GO:0016592 GO:GO:0001104 CTD:51586 KO:K15157 eggNOG:NOG261210
ChiTaRS:MED15 EMBL:AF056191 EMBL:AF328769 EMBL:AK074268
EMBL:AK090465 EMBL:CR456537 EMBL:BC007529 EMBL:BC013985 EMBL:U80745
IPI:IPI00107693 IPI:IPI00220307 IPI:IPI00554734
RefSeq:NP_001003891.1 RefSeq:NP_056973.2 UniGene:Hs.517421 PDB:2GUT
PDBsum:2GUT ProteinModelPortal:Q96RN5 SMR:Q96RN5 DIP:DIP-32908N
IntAct:Q96RN5 MINT:MINT-243991 STRING:Q96RN5 PhosphoSite:Q96RN5
DMDM:27734440 PaxDb:Q96RN5 PRIDE:Q96RN5 DNASU:51586
Ensembl:ENST00000263205 Ensembl:ENST00000292733
Ensembl:ENST00000382974 GeneID:51586 KEGG:hsa:51586 UCSC:uc002zsp.3
UCSC:uc002zsq.3 GeneCards:GC22P020850 HGNC:HGNC:14248 HPA:HPA003179
MIM:607372 neXtProt:NX_Q96RN5 PharmGKB:PA33088 HOVERGEN:HBG053529
InParanoid:Q96RN5 OMA:QETDWRS PhylomeDB:Q96RN5
EvolutionaryTrace:Q96RN5 GenomeRNAi:51586 NextBio:55423
ArrayExpress:Q96RN5 Bgee:Q96RN5 CleanEx:HS_MED15
Genevestigator:Q96RN5 GermOnline:ENSG00000099917 Uniprot:Q96RN5
Length = 788
Score = 510 (184.6 bits), Expect = 8.0e-51, Sum P(2) = 8.0e-51
Identities = 119/282 (42%), Positives = 167/282 (59%)
Query: 29 APSPSGSLNTPGQAQPTSSPCPTQEDQVYRDKIRQLSKYIEPLRRMIARA-ANDDIEKT- 86
+P P + P + +E Q Y DK++QLSKYIEPLRRMI + N+D +K
Sbjct: 505 SPGPLNTPVNPSSVMSPAGSSQAEEQQ-YLDKLKQLSKYIEPLRRMINKIDKNEDRKKDL 563
Query: 87 TKMKKLLEILQSPNKRMPLETLLKCEHVLEKL--DFKHSSL-------LRDHH---PLLE 134
+KMK LL+IL P+KR PL+TL KCE LEKL D + + + PLL+
Sbjct: 564 SKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPPTKQQYLCQPLLD 623
Query: 135 AVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKR--VEEPADDVPEVLQGEI 192
AV ++S NH+L RTF P + + GP I P+ RKR ++ +P VLQGE+
Sbjct: 624 AVLANIRSPVFNHSLYRTFVPAMTAIHGPPIT-APVVCTRKRRLEDDERQSIPSVLQGEV 682
Query: 193 ARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPR-CTMGHE 251
ARLD +F V+LDP+ S + + L+C LDD+ LP VPP+++S+P DYP+ P +
Sbjct: 683 ARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYPAQSPLWIDRQWQ 742
Query: 252 HNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQAC 293
++ PFL SV + SR+ +LP K+SV+ LL+TW SV QAC
Sbjct: 743 YDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSVHQAC 784
Score = 238 (88.8 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
Identities = 47/112 (41%), Positives = 71/112 (63%)
Query: 428 PLPVNRKR--VEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLP 485
P+ RKR ++ +P VLQGE+ARLD +F V+LDP+ S + + L+C LDD+ LP
Sbjct: 657 PVVCTRKRRLEDDERQSIPSVLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLP 716
Query: 486 CVPPIQVSIPEDYPSHPPR-CTMGHEHNTTPFLTSVKNALESRIKKLPLKYS 536
VPP+++S+P DYP+ P +++ PFL SV + SR+ +LP K+S
Sbjct: 717 SVPPLELSVPADYPAQSPLWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHS 768
Score = 69 (29.3 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
Identities = 32/112 (28%), Positives = 51/112 (45%)
Query: 18 SMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYR-DKIRQLSKYIEPLRRMIA 76
S P S G APSPS L +P QP+ SP + Q + L+ + P +++
Sbjct: 463 SQPNSNVSSGPAPSPSSFLPSPSP-QPSQSPVTARTPQNFSVPSPGPLNTPVNP-SSVMS 520
Query: 77 RAANDDIEKTTKMKKLLEILQ--SPNKRMPLETLLKCEHVLEKLDFKHSSLL 126
A + E+ + KL ++ + P +RM + + K E + L K SLL
Sbjct: 521 PAGSSQAEEQQYLDKLKQLSKYIEPLRRM-INKIDKNEDRKKDLS-KMKSLL 570
Score = 44 (20.5 bits), Expect = 8.0e-51, Sum P(2) = 8.0e-51
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 29 APSPSGSLNTPGQAQPTSSPCP 50
+PSP + TP P P P
Sbjct: 435 SPSPGQQVQTPQSMPPPPQPSP 456
Score = 38 (18.4 bits), Expect = 5.9e-16, Sum P(2) = 5.9e-16
Identities = 19/110 (17%), Positives = 49/110 (44%)
Query: 21 GQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYRDKIRQLSKYIEPLRRMIARAAN 80
GQ S+ P P S P S+ P + Q+ + ++Q + + ++ +AA
Sbjct: 120 GQPMSLSGQPPPGTSGMAPHSMAVVSTATPQTQLQLQQVALQQQQQQQQFQQQQ--QAAL 177
Query: 81 DDIEKTTKMKKLLEILQSPNKRMPLETLLKCEHVLEKLDFKHSSLLRDHH 130
++ + ++ + QS ++ + +++ + L++ + L++ HH
Sbjct: 178 QQ-QQQQQQQQQFQAQQSAMQQQ-FQAVVQQQQQLQQQQQQQQHLIKLHH 225
>ZFIN|ZDB-GENE-040426-2032 [details] [associations]
symbol:med15 "mediator complex subunit 15"
species:7955 "Danio rerio" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR019087 Pfam:PF09606
ZFIN:ZDB-GENE-040426-2032 GO:GO:0005737 GO:GO:0016592 GO:GO:0001104
eggNOG:NOG244847 EMBL:BC045472 IPI:IPI00491253 RefSeq:NP_998238.2
UniGene:Dr.78410 ProteinModelPortal:Q7ZVN7 SMR:Q7ZVN7 STRING:Q7ZVN7
PRIDE:Q7ZVN7 GeneID:406346 KEGG:dre:406346 CTD:51586
InParanoid:Q7ZVN7 KO:K15157 OrthoDB:EOG4NGGMT NextBio:20817965
ArrayExpress:Q7ZVN7 Uniprot:Q7ZVN7
Length = 809
Score = 532 (192.3 bits), Expect = 8.1e-51, P = 8.1e-51
Identities = 124/293 (42%), Positives = 175/293 (59%)
Query: 17 QSMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYRDKIRQLSKYIEPLRRMIA 76
QS P Q+ S G +P + A + S EDQ+Y DK+RQLSKYIEPLRRMI
Sbjct: 519 QSYPLQVPSPGPLNTPGNPSSVMSPAGASQS-----EDQLYMDKLRQLSKYIEPLRRMIN 573
Query: 77 RA-ANDDIEKT-TKMKKLLEILQSPNKRMPLETLLKCEHVLEKL--DFKHSS-------L 125
+ N+D +K +KMK LL IL PN R PL+TL KCE LEKL D +
Sbjct: 574 KIDKNEDRKKDLSKMKSLLNILTDPNTRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPC 633
Query: 126 LRDHH---PLLEAVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKRVEEPAD 182
+ + P+L+AV ++S NH+L RTF P + + GP I +P ++++E+
Sbjct: 634 TKKQYLCQPILDAVLANIRSPVFNHSLYRTFAPAMTAIHGPQITGPSIPSRKRKLEDDER 693
Query: 183 D-VPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPS 241
+P +LQGE+ARL+ +F V+LDP+ S + + L+C LDD++LP VPP+Q+SIP DYP
Sbjct: 694 QAIPNILQGEVARLNSKFLVNLDPSFCSNNGMVHLICKLDDKNLPSVPPLQLSIPADYPD 753
Query: 242 HPPRCTM-GHEHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQAC 293
P G ++ PFL +V + S++ +LP K+SV+ LL+TW SVRQAC
Sbjct: 754 QSPHWEDDGQQYEANPFLRTVHKNMTSKLLQLPDKHSVTALLNTWAQSVRQAC 806
Score = 233 (87.1 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 44/110 (40%), Positives = 72/110 (65%)
Query: 429 LPVNRKRVEEPADD-VPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCV 487
+P ++++E+ +P +LQGE+ARL+ +F V+LDP+ S + + L+C LDD++LP V
Sbjct: 681 IPSRKRKLEDDERQAIPNILQGEVARLNSKFLVNLDPSFCSNNGMVHLICKLDDKNLPSV 740
Query: 488 PPIQVSIPEDYPSHPPRCTM-GHEHNTTPFLTSVKNALESRIKKLPLKYS 536
PP+Q+SIP DYP P G ++ PFL +V + S++ +LP K+S
Sbjct: 741 PPLQLSIPADYPDQSPHWEDDGQQYEANPFLRTVHKNMTSKLLQLPDKHS 790
Score = 59 (25.8 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 18 SMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVY 57
S P + S G PSP G +P QP+ SP ++ Q Y
Sbjct: 484 SQPNSVSS-GPTPSPGGFQPSPSP-QPSQSPASSRTPQSY 521
Score = 55 (24.4 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 17 QSMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQ 52
Q Q SV P+PS PG QP+ SP P+Q
Sbjct: 480 QPPSSQPNSVSSGPTPS-----PGGFQPSPSPQPSQ 510
Score = 46 (21.3 bits), Expect = 3.5e-16, Sum P(2) = 3.5e-16
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 17 QSMPGQMRSVGMAPSP-----SGSLNTPGQAQPTSSPCPTQEDQV 56
Q MP Q + + +PSP S+ P Q QP+ P +Q + V
Sbjct: 446 QQMP-QAQQMMSSPSPVQVQTPQSMPPPPQPQPSPQPPSSQPNSV 489
Score = 38 (18.4 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 230 PIQVSIPEDYPSHPPR 245
P+QV P+ P PP+
Sbjct: 460 PVQVQTPQSMPP-PPQ 474
>UNIPROTKB|F1P1D8 [details] [associations]
symbol:Gga.39500 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0019827 "stem cell maintenance" evidence=IEA]
InterPro:IPR019087 Pfam:PF09606 GO:GO:0005794 GO:GO:0016592
GO:GO:0001104 GeneTree:ENSGT00670000098037 OMA:QETDWRS
EMBL:AADN02043237 IPI:IPI00575101 Ensembl:ENSGALT00000010381
Uniprot:F1P1D8
Length = 781
Score = 511 (184.9 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
Identities = 120/282 (42%), Positives = 170/282 (60%)
Query: 29 APSPSGSLNTPGQAQPTSSPCPTQEDQVYRDKIRQLSKYIEPLRRMIARA-ANDDIEKT- 86
+P P + P +S ++E Q Y +K++QLSKYIEPLRRMI + N+D +K
Sbjct: 498 SPGPLNTPGNPNSVMSPASSSQSEEQQ-YLEKLKQLSKYIEPLRRMINKIDKNEDRKKDL 556
Query: 87 TKMKKLLEILQSPNKRMPLETLLKCEHVLEKL--DFKHSSL-------LRDHH---PLLE 134
+KMK LL+IL P+KR PL+TL KCE LEKL D + + + PLL+
Sbjct: 557 SKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPPTKQQYLCQPLLD 616
Query: 135 AVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRKRVEEPAD--DVPEVLQGEI 192
AV ++S NH+L RTF P + + GP I P+ +RKR E D +P VLQGE+
Sbjct: 617 AVLANIRSPVFNHSLYRTFMPAMTAIHGPPIT-APVISSRKRKYEEDDRQTIPNVLQGEV 675
Query: 193 ARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPRCTMG-HE 251
ARL+ +F V+LDP+ S + + L+C LDD++LP VPP+Q+S+P DYP P +
Sbjct: 676 ARLNPKFLVNLDPSHCSNNGTVHLICKLDDKNLPNVPPLQLSVPADYPDQSPLWIKNPRQ 735
Query: 252 HNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQAC 293
+ PFL SV + S++ +LP K+SV+ LL+TW S+RQAC
Sbjct: 736 YAANPFLQSVYQYMTSKLLQLPDKHSVTALLNTWAQSIRQAC 777
Score = 231 (86.4 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 48/112 (42%), Positives = 71/112 (63%)
Query: 428 PLPVNRKRVEEPAD--DVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLP 485
P+ +RKR E D +P VLQGE+ARL+ +F V+LDP+ S + + L+C LDD++LP
Sbjct: 650 PVISSRKRKYEEDDRQTIPNVLQGEVARLNPKFLVNLDPSHCSNNGTVHLICKLDDKNLP 709
Query: 486 CVPPIQVSIPEDYPSHPPRCTMG-HEHNTTPFLTSVKNALESRIKKLPLKYS 536
VPP+Q+S+P DYP P ++ PFL SV + S++ +LP K+S
Sbjct: 710 NVPPLQLSVPADYPDQSPLWIKNPRQYAANPFLQSVYQYMTSKLLQLPDKHS 761
Score = 66 (28.3 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 32/112 (28%), Positives = 52/112 (46%)
Query: 18 SMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYR-DKIRQLSKYIEPLRRMIA 76
S P S G APSPS L +P QP+ SP + Q + L+ P +++
Sbjct: 456 SQPNSNVSSGPAPSPSSFLPSPSP-QPSQSPAAARTPQNFSVPSPGPLNTPGNP-NSVMS 513
Query: 77 RAANDDIEKTTKMKKLLEILQ--SPNKRMPLETLLKCEHVLEKLDFKHSSLL 126
A++ E+ ++KL ++ + P +RM + + K E + L K SLL
Sbjct: 514 PASSSQSEEQQYLEKLKQLSKYIEPLRRM-INKIDKNEDRKKDLS-KMKSLL 563
Score = 40 (19.1 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 29 APSPSGSLNTPGQAQPTSSPCPTQE 53
+PSP TP P P P+ +
Sbjct: 426 SPSPVQQAQTPQSMPPPPQPQPSPQ 450
Score = 37 (18.1 bits), Expect = 2.9e-50, Sum P(2) = 2.9e-50
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 32 PSGS-LNTPGQAQPTSS 47
P G ++ PGQ QP S
Sbjct: 143 PMGQQMSLPGQQQPPGS 159
>MGI|MGI:2137379 [details] [associations]
symbol:Med15 "mediator complex subunit 15" species:10090
"Mus musculus" [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IBA] [GO:0019827 "stem cell maintenance" evidence=IMP]
InterPro:IPR019087 Pfam:PF09606 MGI:MGI:2137379 GO:GO:0005737
GO:GO:0005654 Reactome:REACT_127416 GO:GO:0019827
Reactome:REACT_27166 GO:GO:0016592 GO:GO:0001104 eggNOG:NOG261210
ChiTaRS:MED15 HOVERGEN:HBG053529 EMBL:AF328770 IPI:IPI00125670
UniGene:Mm.208970 ProteinModelPortal:Q924H2 SMR:Q924H2
DIP:DIP-59237N IntAct:Q924H2 STRING:Q924H2 PhosphoSite:Q924H2
PaxDb:Q924H2 PRIDE:Q924H2 HOGENOM:HOG000113523 InParanoid:Q924H2
CleanEx:MM_MED15 Genevestigator:Q924H2
GermOnline:ENSMUSG00000012114 Uniprot:Q924H2
Length = 792
Score = 412 (150.1 bits), Expect = 7.3e-40, Sum P(2) = 7.3e-40
Identities = 98/225 (43%), Positives = 137/225 (60%)
Query: 87 TKMKKLLEILQSPNKRMPLETLLKCEHVLEKL--DFKHSS-----LL----RDH-HPLLE 134
+KMK LL+IL P+KR PL+TL KCE LEKL D + +L +D PLL+
Sbjct: 565 SKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVLPTKQQDLCQPLLD 624
Query: 135 AVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRK----RVEEPA-DDVPEVLQ 189
AV ++S NH+L RTF P + + GP I P+ +RK R EE +P VLQ
Sbjct: 625 AVLANIRSPVFNHSLYRTFVPAMMAIHGPPIVS-PVVCSRKSPVRRFEEDERQSIPNVLQ 683
Query: 190 GEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVSIPEDYPSHPPR-CTM 248
GE+ARLD +F V+LDP+ S + + L+C LDD+ LP VPP+++S+P DYP+ P
Sbjct: 684 GEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPPLELSVPADYPAQSPMWIDR 743
Query: 249 GHEHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQAC 293
+++ PFL SV + SR+ +LP K+SV+ LL+TW S+ QAC
Sbjct: 744 QWQYDANPFLQSVHRCMTSRLLQLPDKHSVTALLNTWAQSIHQAC 788
Score = 260 (96.6 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
Identities = 74/162 (45%), Positives = 96/162 (59%)
Query: 30 PSPSGSLNTPGQAQPTSSPCPTQ--EDQVYRDKIRQLSKYIEPLRRMIARA-ANDDIEKT 86
PSP G LNTP SP + E+Q Y DK++QLSKYIEPLRRMI + N+D +K
Sbjct: 505 PSP-GPLNTPVNPSSVMSPAGSSQAEEQQYLDKLKQLSKYIEPLRRMINKIDKNEDRKKD 563
Query: 87 -TKMKKLLEILQSPNKRMPLETLLKCEHVLEKL--DFKHSS-----LL----RDH-HPLL 133
+KMK LL+IL P+KR PL+TL KCE LEKL D + +L +D PLL
Sbjct: 564 LSKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVLPTKQQDLCQPLL 623
Query: 134 EAVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRK 175
+AV ++S NH+L RTF P + + GP I P+ +RK
Sbjct: 624 DAVLANIRSPVFNHSLYRTFVPAMMAIHGPPIVS-PVVCSRK 664
Score = 239 (89.2 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
Identities = 47/108 (43%), Positives = 69/108 (63%)
Query: 430 PVNRKRVEEPADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPP 489
PV R E+ +P VLQGE+ARLD +F V+LDP+ S + + L+C LDD+ LP VPP
Sbjct: 666 PVRRFE-EDERQSIPNVLQGEVARLDPKFLVNLDPSHCSNNGTVHLICKLDDKDLPSVPP 724
Query: 490 IQVSIPEDYPSHPPR-CTMGHEHNTTPFLTSVKNALESRIKKLPLKYS 536
+++S+P DYP+ P +++ PFL SV + SR+ +LP K+S
Sbjct: 725 LELSVPADYPAQSPMWIDRQWQYDANPFLQSVHRCMTSRLLQLPDKHS 772
Score = 69 (29.3 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 32/112 (28%), Positives = 51/112 (45%)
Query: 18 SMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYR-DKIRQLSKYIEPLRRMIA 76
S P S G APSPS L +P QP+ SP + Q + L+ + P +++
Sbjct: 464 SQPNSNVSSGPAPSPSSFLPSPSP-QPSQSPVTARTPQNFSVPSPGPLNTPVNP-SSVMS 521
Query: 77 RAANDDIEKTTKMKKLLEILQ--SPNKRMPLETLLKCEHVLEKLDFKHSSLL 126
A + E+ + KL ++ + P +RM + + K E + L K SLL
Sbjct: 522 PAGSSQAEEQQYLDKLKQLSKYIEPLRRM-INKIDKNEDRKKDLS-KMKSLL 571
Score = 45 (20.9 bits), Expect = 7.3e-40, Sum P(2) = 7.3e-40
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 29 APSPSGSLNTPGQAQPTSSPCPTQEDQ 55
+PSP + TP P P P Q
Sbjct: 439 SPSPGQQVQTPQSMPPPPQPSPQPGSQ 465
Score = 38 (18.4 bits), Expect = 4.6e-16, Sum P(2) = 4.6e-16
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 278 VSQLLDTWEMSVRQACAPTRNPTSSPSISVKV 309
+++ L M VR PT ++ PS S+ +
Sbjct: 390 IAEALAQGGMHVRARFPPTSTMSAGPSSSISL 421
>FB|FBgn0029785 [details] [associations]
symbol:RpL35 "Ribosomal protein L35" species:7227 "Drosophila
melanogaster" [GO:0006412 "translation" evidence=ISS] [GO:0003735
"structural constituent of ribosome" evidence=ISS;IDA] [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS] [GO:0005811
"lipid particle" evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
[GO:0000022 "mitotic spindle elongation" evidence=IMP] [GO:0007052
"mitotic spindle organization" evidence=IMP] [GO:0051298
"centrosome duplication" evidence=IMP] InterPro:IPR001854
InterPro:IPR018254 Pfam:PF00831 PROSITE:PS00579 HAMAP:MF_00374
GO:GO:0051298 GO:GO:0005811 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0000022 Gene3D:1.10.287.310 SUPFAM:SSF46561
TIGRFAMs:TIGR00012 ChiTaRS:RPL35 EMBL:AY118364
ProteinModelPortal:Q8MT59 SMR:Q8MT59 STRING:Q8MT59 PRIDE:Q8MT59
FlyBase:FBgn0029785 InParanoid:Q8MT59 OrthoDB:EOG444J2X
ArrayExpress:Q8MT59 Bgee:Q8MT59 Uniprot:Q8MT59
Length = 123
Score = 283 (104.7 bits), Expect = 2.4e-24, P = 2.4e-24
Identities = 64/119 (53%), Positives = 72/119 (60%)
Query: 307 VKVKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVM 366
VKVKCSELR +LRVAKVTGG+ SKLSKIRVVRKAI RVYIVM
Sbjct: 2 VKVKCSELRIKDKKELTKQLDELKNELLSLRVAKVTGGSPSKLSKIRVVRKAIARVYIVM 61
Query: 367 HQKQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPRK 425
HQKQKEN+R + + +KKYKPLD + KTLKEIR+R FP RK
Sbjct: 62 HQKQKENLRKVFK--NKKYKPLDLRKKKTRAIRKALSPRDANRKTLKEIRKRSVFPQRK 118
>RGD|1303007 [details] [associations]
symbol:Rpl35 "ribosomal protein L35" species:10116 "Rattus
norvegicus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO]
InterPro:IPR001854 InterPro:IPR018254 Pfam:PF00831 PROSITE:PS00579
RGD:1303007 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:1.10.287.310 SUPFAM:SSF46561 TIGRFAMs:TIGR00012
eggNOG:COG0255 HOGENOM:HOG000207749 KO:K02918
GeneTree:ENSGT00390000016384 CTD:11224 HOVERGEN:HBG000862
OrthoDB:EOG45QHFR EMBL:X51705 EMBL:BC058499 IPI:IPI00212783
PIR:A34571 RefSeq:NP_997676.1 UniGene:Rn.3458
ProteinModelPortal:P17078 SMR:P17078 STRING:P17078
PhosphoSite:P17078 PRIDE:P17078 Ensembl:ENSRNOT00000019162
GeneID:296709 KEGG:rno:296709 UCSC:RGD:1303007 InParanoid:P17078
NextBio:641701 Genevestigator:P17078 GermOnline:ENSRNOG00000014272
Uniprot:P17078
Length = 123
Score = 226 (84.6 bits), Expect = 4.5e-18, P = 4.5e-18
Identities = 54/118 (45%), Positives = 66/118 (55%)
Query: 308 KVKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+K +LR + LRVAKVTGGAASKLSKIRVVRK+I RV V++
Sbjct: 3 KIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVIN 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPRK 425
Q QKEN+R + KKYKPLD HE KLKT K+ R+ + +P RK
Sbjct: 63 QTQKENLRKFYKG--KKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRK 118
>UNIPROTKB|F1NYC0 [details] [associations]
symbol:RPL35 "60S ribosomal protein L35" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IEA]
InterPro:IPR001854 InterPro:IPR018254 Pfam:PF00831 PROSITE:PS00579
HAMAP:MF_00374 GO:GO:0006412 GO:GO:0003735 GO:GO:0022625
Gene3D:1.10.287.310 SUPFAM:SSF46561 TIGRFAMs:TIGR00012 OMA:LRTKSKE
GeneTree:ENSGT00390000016384 EMBL:AADN02026322 IPI:IPI00821839
Ensembl:ENSGALT00000038698 ArrayExpress:F1NYC0 Uniprot:F1NYC0
Length = 127
Score = 221 (82.9 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 53/118 (44%), Positives = 65/118 (55%)
Query: 308 KVKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+K +LR + LRVAKVTGGAASKLSKIRVVRK+I RV V++
Sbjct: 7 KIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVIN 66
Query: 368 QKQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPRK 425
Q QKEN+R + KKYKPLD HE LKT K+ R+ + +P RK
Sbjct: 67 QTQKENLRKFYKG--KKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPVRK 122
>UNIPROTKB|Q98TF7 [details] [associations]
symbol:RPL35 "60S ribosomal protein L35" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] InterPro:IPR001854 InterPro:IPR018254
Pfam:PF00831 PROSITE:PS00579 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:1.10.287.310 SUPFAM:SSF46561
TIGRFAMs:TIGR00012 eggNOG:COG0255 HOGENOM:HOG000207749 KO:K02918
GeneTree:ENSGT00390000016384 CTD:11224 HOVERGEN:HBG000862
EMBL:AB046395 IPI:IPI00582832 RefSeq:NP_989604.1 UniGene:Gga.39147
ProteinModelPortal:Q98TF7 SMR:Q98TF7 STRING:Q98TF7 PRIDE:Q98TF7
Ensembl:ENSGALT00000001542 GeneID:374133 KEGG:gga:374133
NextBio:20813648 ArrayExpress:Q98TF7 Uniprot:Q98TF7
Length = 123
Score = 221 (82.9 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 53/118 (44%), Positives = 65/118 (55%)
Query: 308 KVKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+K +LR + LRVAKVTGGAASKLSKIRVVRK+I RV V++
Sbjct: 3 KIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVIN 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPRK 425
Q QKEN+R + KKYKPLD HE LKT K+ R+ + +P RK
Sbjct: 63 QTQKENLRKFYKG--KKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPVRK 118
>UNIPROTKB|Q3MHM7 [details] [associations]
symbol:RPL35 "60S ribosomal protein L35" species:9913 "Bos
taurus" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR001854 InterPro:IPR018254
Pfam:PF00831 PROSITE:PS00579 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:1.10.287.310 SUPFAM:SSF46561
TIGRFAMs:TIGR00012 eggNOG:COG0255 HOGENOM:HOG000207749 KO:K02918
OMA:LRTKSKE GeneTree:ENSGT00390000016384 EMBL:BC105179
IPI:IPI00693884 RefSeq:NP_001029667.1 UniGene:Bt.11679
ProteinModelPortal:Q3MHM7 SMR:Q3MHM7 STRING:Q3MHM7 PRIDE:Q3MHM7
Ensembl:ENSBTAT00000004161 GeneID:515534 KEGG:bta:515534 CTD:11224
HOVERGEN:HBG000862 InParanoid:Q3MHM7 OrthoDB:EOG45QHFR
NextBio:20871870 Uniprot:Q3MHM7
Length = 123
Score = 220 (82.5 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 53/118 (44%), Positives = 65/118 (55%)
Query: 308 KVKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+K +LR + LRVAKVTGGAASKLSKIRVVRK+I RV V++
Sbjct: 3 KIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVIN 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPRK 425
Q QKEN+R + KKYKPLD HE LKT K+ R+ + +P RK
Sbjct: 63 QTQKENLRKFYKG--KKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRK 118
>UNIPROTKB|E2RPE5 [details] [associations]
symbol:RPL35 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR001854
InterPro:IPR018254 Pfam:PF00831 PROSITE:PS00579 HAMAP:MF_00374
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:1.10.287.310
SUPFAM:SSF46561 TIGRFAMs:TIGR00012 OMA:LRTKSKE
GeneTree:ENSGT00390000016384 EMBL:AAEX03006884
ProteinModelPortal:E2RPE5 PRIDE:E2RPE5 Ensembl:ENSCAFT00000032194
NextBio:20855706 Uniprot:E2RPE5
Length = 123
Score = 220 (82.5 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 53/118 (44%), Positives = 65/118 (55%)
Query: 308 KVKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+K +LR + LRVAKVTGGAASKLSKIRVVRK+I RV V++
Sbjct: 3 KIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVIN 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPRK 425
Q QKEN+R + KKYKPLD HE LKT K+ R+ + +P RK
Sbjct: 63 QTQKENLRKFYKG--KKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRK 118
>UNIPROTKB|P42766 [details] [associations]
symbol:RPL35 "60S ribosomal protein L35" species:9606 "Homo
sapiens" [GO:0006412 "translation" evidence=NAS;TAS] [GO:0003735
"structural constituent of ribosome" evidence=NAS] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=TAS] [GO:0005730 "nucleolus" evidence=TAS]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0006414 "translational elongation" evidence=TAS] [GO:0006415
"translational termination" evidence=TAS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 Reactome:REACT_17015 InterPro:IPR001854
InterPro:IPR018254 Pfam:PF00831 PROSITE:PS00579
Reactome:REACT_116125 GO:GO:0005730 GO:GO:0000184 GO:GO:0006413
GO:GO:0003729 GO:GO:0003735 EMBL:AL354928 GO:GO:0006415
GO:GO:0006414 Reactome:REACT_1762 GO:GO:0006614 GO:GO:0022625
GO:GO:0019083 Gene3D:1.10.287.310 SUPFAM:SSF46561
TIGRFAMs:TIGR00012 eggNOG:COG0255 KO:K02918 OMA:LRTKSKE CTD:11224
HOVERGEN:HBG000862 OrthoDB:EOG45QHFR EMBL:U12465 EMBL:CR456877
EMBL:AK291072 EMBL:BC000348 EMBL:BC010919 EMBL:BC071915
EMBL:BC094828 EMBL:AB046409 IPI:IPI00412607 PIR:G01477
RefSeq:NP_009140.1 UniGene:Hs.182825 ProteinModelPortal:P42766
SMR:P42766 IntAct:P42766 MINT:MINT-5000320 STRING:P42766
PhosphoSite:P42766 DMDM:1173039 SWISS-2DPAGE:P42766 PaxDb:P42766
PRIDE:P42766 DNASU:11224 Ensembl:ENST00000348462 GeneID:11224
KEGG:hsa:11224 UCSC:uc004boy.1 GeneCards:GC09M127620
HGNC:HGNC:10344 HPA:HPA006047 neXtProt:NX_P42766 PharmGKB:PA34727
InParanoid:P42766 PhylomeDB:P42766 ChiTaRS:RPL35 GenomeRNAi:11224
NextBio:42722 ArrayExpress:P42766 Bgee:P42766 CleanEx:HS_RPL35
Genevestigator:P42766 GermOnline:ENSG00000136942 Uniprot:P42766
Length = 123
Score = 220 (82.5 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 53/118 (44%), Positives = 65/118 (55%)
Query: 308 KVKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+K +LR + LRVAKVTGGAASKLSKIRVVRK+I RV V++
Sbjct: 3 KIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVIN 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPRK 425
Q QKEN+R + KKYKPLD HE LKT K+ R+ + +P RK
Sbjct: 63 QTQKENLRKFYKG--KKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRK 118
>UNIPROTKB|Q29361 [details] [associations]
symbol:RPL35 "60S ribosomal protein L35" species:9823 "Sus
scrofa" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR001854 InterPro:IPR018254 Pfam:PF00831 PROSITE:PS00579
GO:GO:0006412 GO:GO:0003735 GO:GO:0022625 EMBL:AP009124
Gene3D:1.10.287.310 SUPFAM:SSF46561 TIGRFAMs:TIGR00012
eggNOG:COG0255 HOGENOM:HOG000207749 KO:K02918 OMA:LRTKSKE
GeneTree:ENSGT00390000016384 CTD:11224 HOVERGEN:HBG000862
OrthoDB:EOG45QHFR EMBL:AB055884 EMBL:AY550044 EMBL:DQ629168
EMBL:F14766 RefSeq:NP_999491.1 UniGene:Ssc.11125
ProteinModelPortal:Q29361 SMR:Q29361 STRING:Q29361
Ensembl:ENSSSCT00000006152 GeneID:397598 KEGG:ssc:397598
Uniprot:Q29361
Length = 123
Score = 220 (82.5 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 53/118 (44%), Positives = 65/118 (55%)
Query: 308 KVKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+K +LR + LRVAKVTGGAASKLSKIRVVRK+I RV V++
Sbjct: 3 KIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVIN 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPRK 425
Q QKEN+R + KKYKPLD HE LKT K+ R+ + +P RK
Sbjct: 63 QTQKENLRKFYKG--KKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRK 118
>UNIPROTKB|E1BFM3 [details] [associations]
symbol:Bt.62501 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR001854 InterPro:IPR018254
Pfam:PF00831 PROSITE:PS00579 HAMAP:MF_00374 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:1.10.287.310 SUPFAM:SSF46561
TIGRFAMs:TIGR00012 OMA:EKNREMY GeneTree:ENSGT00390000016384
EMBL:DAAA02051956 IPI:IPI00693404 Ensembl:ENSBTAT00000013301
Uniprot:E1BFM3
Length = 123
Score = 214 (80.4 bits), Expect = 9.2e-17, P = 9.2e-17
Identities = 52/118 (44%), Positives = 64/118 (54%)
Query: 308 KVKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+K +LR + LRVAKVTGGAASKLSKIRVVRK+I RV V +
Sbjct: 3 KIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVTN 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPRK 425
Q QKEN+R + KKY+PLD HE LKT K+ R+ + +P RK
Sbjct: 63 QTQKENLRKFYKG--KKYEPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRK 118
>RGD|1586622 [details] [associations]
symbol:LOC686074 "similar to 60S ribosomal protein L35"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR001854 InterPro:IPR018254 Pfam:PF00831 PROSITE:PS00579
HAMAP:MF_00374 RGD:1586622 RGD:1589358 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:1.10.287.310 SUPFAM:SSF46561
TIGRFAMs:TIGR00012 GeneTree:ENSGT00390000016384 OrthoDB:EOG45QHFR
IPI:IPI00363291 RefSeq:XP_001066433.3 RefSeq:XP_002725386.2
Ensembl:ENSRNOT00000051911 GeneID:686074 KEGG:rno:686074
OMA:QLLMAKV Uniprot:D3ZN79
Length = 123
Score = 213 (80.0 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 52/118 (44%), Positives = 65/118 (55%)
Query: 308 KVKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+K +LR + L +AKVTGGAASKLSKIRVVRK+I RV V++
Sbjct: 3 KMKARDLRGKKKEELLKQLDDLKVEMSQLLMAKVTGGAASKLSKIRVVRKSIARVLTVIN 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPRK 425
Q QKEN+R + KKYKPLD HE KLKT K+ R+ + +P RK
Sbjct: 63 QTQKENLRKFYKG--KKYKPLDLRPKKTRAMRCRLTKHEEKLKTKKQQRKERLYPLRK 118
>RGD|1589358 [details] [associations]
symbol:LOC681918 "similar to 60S ribosomal protein L35"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR001854 InterPro:IPR018254 Pfam:PF00831 PROSITE:PS00579
HAMAP:MF_00374 RGD:1586622 RGD:1589358 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:1.10.287.310 SUPFAM:SSF46561
TIGRFAMs:TIGR00012 GeneTree:ENSGT00390000016384 OrthoDB:EOG45QHFR
IPI:IPI00363291 RefSeq:XP_001066433.3 RefSeq:XP_002725386.2
Ensembl:ENSRNOT00000051911 GeneID:686074 KEGG:rno:686074
OMA:QLLMAKV Uniprot:D3ZN79
Length = 123
Score = 213 (80.0 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 52/118 (44%), Positives = 65/118 (55%)
Query: 308 KVKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+K +LR + L +AKVTGGAASKLSKIRVVRK+I RV V++
Sbjct: 3 KMKARDLRGKKKEELLKQLDDLKVEMSQLLMAKVTGGAASKLSKIRVVRKSIARVLTVIN 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPRK 425
Q QKEN+R + KKYKPLD HE KLKT K+ R+ + +P RK
Sbjct: 63 QTQKENLRKFYKG--KKYKPLDLRPKKTRAMRCRLTKHEEKLKTKKQQRKERLYPLRK 118
>UNIPROTKB|F1M6G3 [details] [associations]
symbol:F1M6G3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR001854
InterPro:IPR018254 Pfam:PF00831 PROSITE:PS00579 HAMAP:MF_00374
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:1.10.287.310
SUPFAM:SSF46561 TIGRFAMs:TIGR00012 GeneTree:ENSGT00390000016384
IPI:IPI00361408 Ensembl:ENSRNOT00000004213 OMA:LYPLRTS
Uniprot:F1M6G3
Length = 118
Score = 205 (77.2 bits), Expect = 8.8e-16, P = 8.8e-16
Identities = 48/91 (52%), Positives = 56/91 (61%)
Query: 334 ANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKENMRNLIRKEHKKYKPLDXXXX 393
+ LRVAKVTGGAASKLSKIRVVRK+I RV V Q QKEN+R + KKYKPLD
Sbjct: 24 SQLRVAKVTGGAASKLSKIRVVRKSIARVLTVNSQTQKENLRKFFKG--KKYKPLDLRPK 81
Query: 394 XXXXXXXXXXXHERKLKTLKEIRRRQAFPPR 424
HE KLKT K+ + + +P R
Sbjct: 82 KTGAMRRRLTKHEEKLKTKKQQWKERLYPLR 112
>ZFIN|ZDB-GENE-020419-2 [details] [associations]
symbol:rpl35 "ribosomal protein L35" species:7955
"Danio rerio" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0009790 "embryo development" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IMP] InterPro:IPR001854
InterPro:IPR018254 Pfam:PF00831 PROSITE:PS00579
ZFIN:ZDB-GENE-020419-2 GO:GO:0006412 GO:GO:0005840 GO:GO:0009790
GO:GO:0051726 GO:GO:0003735 Gene3D:1.10.287.310 SUPFAM:SSF46561
TIGRFAMs:TIGR00012 eggNOG:COG0255 HOGENOM:HOG000207749 KO:K02918
GeneTree:ENSGT00390000016384 CTD:11224 HOVERGEN:HBG000862
OrthoDB:EOG45QHFR EMBL:AF506205 EMBL:BC055640 IPI:IPI00494766
RefSeq:NP_775340.1 UniGene:Dr.119727 ProteinModelPortal:Q8JHJ1
SMR:Q8JHJ1 STRING:Q8JHJ1 PRIDE:Q8JHJ1 Ensembl:ENSDART00000009241
GeneID:192299 KEGG:dre:192299 InParanoid:Q8JHJ1 NextBio:20797140
Bgee:Q8JHJ1 Uniprot:Q8JHJ1
Length = 123
Score = 202 (76.2 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 51/118 (43%), Positives = 62/118 (52%)
Query: 308 KVKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+K +LR + LRVAKVTGGAASKLSKIRVVRK+I RV V++
Sbjct: 3 KIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVIN 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPRK 425
Q QKEN+R + KKYKPLD HE L T K R+ + + RK
Sbjct: 63 QTQKENLRKFYKG--KKYKPLDLRPKKTRAIRRQLTKHEENLMTKKMQRKSRLYSIRK 118
>RGD|1563157 [details] [associations]
symbol:RGD1563157 "similar to 60S ribosomal protein L35"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR001854 InterPro:IPR018254 Pfam:PF00831 PROSITE:PS00579
HAMAP:MF_00374 RGD:1563157 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:1.10.287.310 SUPFAM:SSF46561
TIGRFAMs:TIGR00012 GeneTree:ENSGT00390000016384 OrthoDB:EOG45QHFR
IPI:IPI00360383 RefSeq:XP_001074453.1 RefSeq:XP_233992.1
PRIDE:D3ZB50 Ensembl:ENSRNOT00000041376 GeneID:298910
KEGG:rno:298910 CTD:298910 NextBio:644495 Uniprot:D3ZB50
Length = 123
Score = 189 (71.6 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 43/92 (46%), Positives = 57/92 (61%)
Query: 334 ANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKENMRNLIRKEHKKYKPLDXXXX 393
+ R+AKVTGGA SKLSKIRV+RK+I RV V++Q QKEN+R + KKYKPLD
Sbjct: 29 SQFRIAKVTGGAMSKLSKIRVLRKSIARVLTVINQIQKENLRKFYKG--KKYKPLDLRPK 86
Query: 394 XXXXXXXXXXXHERKLKTLKEIRRRQAFPPRK 425
E +L+T K+ R+ + +P RK
Sbjct: 87 KTRAMRRRLTKLEERLETKKQQRKERLYPLRK 118
>TAIR|locus:2100686 [details] [associations]
symbol:AT3G55170 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IDA] InterPro:IPR001854 InterPro:IPR018254 Pfam:PF00831
PROSITE:PS00579 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0006412 EMBL:AL132954 GO:GO:0003735 GO:GO:0022625
Gene3D:1.10.287.310 SUPFAM:SSF46561 TIGRFAMs:TIGR00012
eggNOG:COG0255 HOGENOM:HOG000207749 KO:K02918
ProtClustDB:CLSN2683258 EMBL:BT006384 IPI:IPI00527437 PIR:T47656
RefSeq:NP_191077.1 RefSeq:NP_974440.1 UniGene:At.35046
ProteinModelPortal:Q9M3D2 SMR:Q9M3D2 STRING:Q9M3D2 PaxDb:Q9M3D2
PRIDE:Q9M3D2 EnsemblPlants:AT3G55170.1 EnsemblPlants:AT3G55170.2
GeneID:824683 KEGG:ath:AT3G55170 GeneFarm:342 TAIR:At3g55170
InParanoid:Q9M3D2 OMA:EKNREMY PhylomeDB:Q9M3D2
Genevestigator:Q9M3D2 GermOnline:AT3G55170 Uniprot:Q9M3D2
Length = 123
Score = 182 (69.1 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 46/118 (38%), Positives = 60/118 (50%)
Query: 308 KVKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
++K ELR A+LRVAKVTGGA +KLSKI+VVRK+I +V V
Sbjct: 3 RIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSS 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPRK 425
QKQK +R + +KK PLD H+ LKT +E ++ FP RK
Sbjct: 63 QKQKSALREAYK--NKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRK 118
>WB|WBGene00004449 [details] [associations]
symbol:rpl-35 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
InterPro:IPR001854 InterPro:IPR018254 Pfam:PF00831 PROSITE:PS00579
GO:GO:0009792 GO:GO:0040007 GO:GO:0006915 GO:GO:0002119
GO:GO:0006412 GO:GO:0000003 GO:GO:0005840 GO:GO:0003735
EMBL:FO080278 Gene3D:1.10.287.310 SUPFAM:SSF46561
TIGRFAMs:TIGR00012 eggNOG:COG0255 HOGENOM:HOG000207749 KO:K02918
OMA:LRTKSKE GeneTree:ENSGT00390000016384 PIR:S44905
RefSeq:NP_498702.1 ProteinModelPortal:P34662 SMR:P34662
DIP:DIP-24880N MINT:MINT-1056742 STRING:P34662 PaxDb:P34662
EnsemblMetazoa:ZK652.4.1 EnsemblMetazoa:ZK652.4.2
EnsemblMetazoa:ZK652.4.3 GeneID:176097 KEGG:cel:CELE_ZK652.4
UCSC:ZK652.4.1 CTD:176097 WormBase:ZK652.4 InParanoid:P34662
NextBio:891104 Uniprot:P34662
Length = 123
Score = 182 (69.1 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 44/107 (41%), Positives = 56/107 (52%)
Query: 308 KVKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+KC LR A LRV+KVTGGAASKLSKIRVVRK I R+ V++
Sbjct: 3 KLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTVIN 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKE 414
Q QK+ +R +HK YKP+D HE L++ K+
Sbjct: 63 QTQKQELRKFYA-DHK-YKPIDLRLKKTRAIRRRLTAHELSLRSAKQ 107
>TAIR|locus:2039802 [details] [associations]
symbol:AT2G39390 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] [GO:0022626 "cytosolic ribosome" evidence=IDA]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] InterPro:IPR001854
InterPro:IPR018254 Pfam:PF00831 PROSITE:PS00579 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006412 EMBL:AC004218 GO:GO:0003735
GO:GO:0022625 Gene3D:1.10.287.310 SUPFAM:SSF46561
TIGRFAMs:TIGR00012 eggNOG:COG0255 HOGENOM:HOG000207749 KO:K02918
ProtClustDB:CLSN2683258 EMBL:AY035104 EMBL:AY063036 EMBL:AY084718
IPI:IPI00526629 PIR:T00549 RefSeq:NP_181471.1 UniGene:At.22434
ProteinModelPortal:O80626 SMR:O80626 STRING:O80626 PaxDb:O80626
PRIDE:O80626 EnsemblPlants:AT2G39390.1 GeneID:818524
KEGG:ath:AT2G39390 GeneFarm:344 TAIR:At2g39390 InParanoid:O80626
OMA:KKTCAMR PhylomeDB:O80626 Genevestigator:O80626
GermOnline:AT2G39390 Uniprot:O80626
Length = 123
Score = 181 (68.8 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 46/118 (38%), Positives = 60/118 (50%)
Query: 308 KVKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
++K ELR A LRVAKVTGGA +KLSKI+VVRK+I +V V+
Sbjct: 3 RIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVIS 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPRK 425
QKQK +R + +KK PLD H+ LKT +E ++ FP RK
Sbjct: 63 QKQKSALREAYK--NKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRK 118
>TAIR|locus:2074974 [details] [associations]
symbol:AT3G09500 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
InterPro:IPR001854 InterPro:IPR018254 Pfam:PF00831 PROSITE:PS00579
GO:GO:0009506 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0006412 EMBL:AC016661 GO:GO:0003735 GO:GO:0022625
Gene3D:1.10.287.310 SUPFAM:SSF46561 TIGRFAMs:TIGR00012
eggNOG:COG0255 EMBL:BT004175 EMBL:BT004938 EMBL:AY086291
IPI:IPI00532114 RefSeq:NP_187561.1 UniGene:At.40096
ProteinModelPortal:Q9SF53 SMR:Q9SF53 STRING:Q9SF53 PaxDb:Q9SF53
PRIDE:Q9SF53 EnsemblPlants:AT3G09500.1 GeneID:820107
KEGG:ath:AT3G09500 GeneFarm:346 TAIR:At3g09500 HOGENOM:HOG000207749
InParanoid:Q9SF53 KO:K02918 OMA:LRTKSKE PhylomeDB:Q9SF53
ProtClustDB:CLSN2683258 Genevestigator:Q9SF53 GermOnline:AT3G09500
Uniprot:Q9SF53
Length = 123
Score = 178 (67.7 bits), Expect = 7.5e-13, P = 7.5e-13
Identities = 46/118 (38%), Positives = 59/118 (50%)
Query: 308 KVKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
++K ELR A LRVAKVTGGA +KLSKI+VVRK+I +V V
Sbjct: 3 RIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSS 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPRK 425
QKQK +R + +KK PLD H+ LKT +E ++ FP RK
Sbjct: 63 QKQKSALREAYK--NKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRK 118
>UNIPROTKB|F1LUA5 [details] [associations]
symbol:F1LUA5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR001854
Pfam:PF00831 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:1.10.287.310 SUPFAM:SSF46561 TIGRFAMs:TIGR00012
IPI:IPI00391998 Ensembl:ENSRNOT00000036284 Uniprot:F1LUA5
Length = 121
Score = 169 (64.5 bits), Expect = 7.1e-12, P = 7.1e-12
Identities = 40/88 (45%), Positives = 52/88 (59%)
Query: 338 VAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKENMRNLIRKEHKKYKPLDXXXXXXXX 397
VAKVTGG ASKLSKIRV RK I V +++Q QK+N+R L + K+YK LD
Sbjct: 31 VAKVTGGGASKLSKIRVERKPIACVLAIINQTQKKNLRKLYKG--KEYKTLDLRPKKTRA 88
Query: 398 XXXXXXXHERKLKTLKEIRRRQAFPPRK 425
H+ KLKT K+ R+ +P R+
Sbjct: 89 VRRQLAKHQEKLKTKKQPRKELMYPLRQ 116
>RGD|1564550 [details] [associations]
symbol:RGD1564550 "similar to 60S ribosomal protein L35"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR001854 Pfam:PF00831 HAMAP:MF_00374 RGD:1564550
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:1.10.287.310
SUPFAM:SSF46561 TIGRFAMs:TIGR00012 GeneTree:ENSGT00390000016384
OrthoDB:EOG45QHFR IPI:IPI00370775 RefSeq:XP_001081254.3
RefSeq:XP_220862.5 Ensembl:ENSRNOT00000042211 GeneID:287623
KEGG:rno:287623 CTD:287623 Uniprot:D3ZTG8
Length = 123
Score = 168 (64.2 bits), Expect = 9.1e-12, P = 9.1e-12
Identities = 44/118 (37%), Positives = 60/118 (50%)
Query: 308 KVKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+K +LR+ + LRV+KVTG A S+LSKIRVV K I+ V +++
Sbjct: 3 KIKAQDLRSKEEEELLKQLGDLKVELSQLRVSKVTGRALSRLSKIRVVCKFIVWVLTIIN 62
Query: 368 QKQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPRK 425
Q QKEN+R + KKYKPLD E KL+T K+ + +P RK
Sbjct: 63 QTQKENLRKFYKG--KKYKPLDLRPSKIRAMRRHLTKPEEKLETKKQQWKEWLYPLRK 118
>POMBASE|SPCC613.05c [details] [associations]
symbol:rpl35 "60S ribosomal protein L35" species:4896
"Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic translation"
evidence=NAS] [GO:0003735 "structural constituent of ribosome"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006412 "translation" evidence=ISO]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO]
InterPro:IPR001854 InterPro:IPR018254 Pfam:PF00831 PROSITE:PS00579
PomBase:SPCC613.05c GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003735 GO:GO:0002181 GO:GO:0022625
Gene3D:1.10.287.310 SUPFAM:SSF46561 TIGRFAMs:TIGR00012
eggNOG:COG0255 HOGENOM:HOG000207749 KO:K02918 OMA:LRTKSKE
PIR:T41471 RefSeq:NP_587693.1 ProteinModelPortal:O74904 SMR:O74904
IntAct:O74904 STRING:O74904 PRIDE:O74904 EnsemblFungi:SPCC613.05c.1
GeneID:2539308 KEGG:spo:SPCC613.05c OrthoDB:EOG4GTPPM
NextBio:20800474 Uniprot:O74904
Length = 122
Score = 156 (60.0 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 39/117 (33%), Positives = 57/117 (48%)
Query: 309 VKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQ 368
+K ELR A+LRV K+ GG+ SKLSKI+ RK I R+ V+++
Sbjct: 3 LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINE 62
Query: 369 KQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPRK 425
+ R + +KKY PLD +E+ KTLK+I++ + FP RK
Sbjct: 63 SNRLAAREAYK--NKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKKERYFPLRK 117
>ASPGD|ASPL0000059648 [details] [associations]
symbol:AN1228 species:162425 "Emericella nidulans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR001854 Pfam:PF00831 HAMAP:MF_00374
EMBL:BN001308 GO:GO:0006412 GO:GO:0005840 EMBL:AACD01000017
GO:GO:0003735 Gene3D:1.10.287.310 SUPFAM:SSF46561
TIGRFAMs:TIGR00012 eggNOG:COG0255 HOGENOM:HOG000207749 KO:K02918
OMA:LRTKSKE OrthoDB:EOG4GTPPM RefSeq:XP_658832.1
ProteinModelPortal:Q5BE02 SMR:Q5BE02 STRING:Q5BE02
EnsemblFungi:CADANIAT00001396 GeneID:2877009 KEGG:ani:AN1228.2
Uniprot:Q5BE02
Length = 124
Score = 155 (59.6 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 43/121 (35%), Positives = 58/121 (47%)
Query: 305 ISVKVKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYI 364
+S KVK +L A LRV K+TGGA+SK +I VRK+I RV
Sbjct: 1 MSSKVKAGQLWGKSKDELTKQLDELKTELAQLRVQKITGGASSKSLRIHDVRKSIARVLT 60
Query: 365 VMHQKQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPR 424
V++ Q+ +R L K +KKY PLD HE LKT ++ ++ FP R
Sbjct: 61 VINANQRSQLR-LFYK-NKKYLPLDLRPRLTRALRRRLTKHEATLKTERQRKKEIHFPQR 118
Query: 425 K 425
K
Sbjct: 119 K 119
>UNIPROTKB|F2Z388 [details] [associations]
symbol:RPL35 "60S ribosomal protein L35" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR001854 InterPro:IPR018254
Pfam:PF00831 PROSITE:PS00579 HAMAP:MF_00374 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AL354928 Gene3D:1.10.287.310
SUPFAM:SSF46561 TIGRFAMs:TIGR00012 HGNC:HGNC:10344 ChiTaRS:RPL35
IPI:IPI01014264 ProteinModelPortal:F2Z388 SMR:F2Z388 PRIDE:F2Z388
Ensembl:ENST00000493018 ArrayExpress:F2Z388 Bgee:F2Z388
Uniprot:F2Z388
Length = 96
Score = 155 (59.6 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 36/72 (50%), Positives = 44/72 (61%)
Query: 308 KVKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+K +LR + LRVAKVTGGAASKLSKIRVVRK+I RV V++
Sbjct: 3 KIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVIN 62
Query: 368 QKQKENMRNLIR 379
Q QKEN+R +
Sbjct: 63 QTQKENLRKFYK 74
>UNIPROTKB|H0Y3A0 [details] [associations]
symbol:RPL35 "60S ribosomal protein L35" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR001854 InterPro:IPR018254
Pfam:PF00831 PROSITE:PS00579 HAMAP:MF_00374 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AL354928 Gene3D:1.10.287.310
SUPFAM:SSF46561 TIGRFAMs:TIGR00012 HGNC:HGNC:10344 ChiTaRS:RPL35
ProteinModelPortal:H0Y3A0 PRIDE:H0Y3A0 Ensembl:ENST00000373570
Bgee:H0Y3A0 Uniprot:H0Y3A0
Length = 96
Score = 155 (59.6 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 36/72 (50%), Positives = 44/72 (61%)
Query: 308 KVKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K+K +LR + LRVAKVTGGAASKLSKIRVVRK+I RV V++
Sbjct: 3 KIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVIN 62
Query: 368 QKQKENMRNLIR 379
Q QKEN+R +
Sbjct: 63 QTQKENLRKFYK 74
>RGD|1593195 [details] [associations]
symbol:LOC367050 "similar to 60S ribosomal protein L35"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR001854 Pfam:PF00831 RGD:1593195 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:1.10.287.310 SUPFAM:SSF46561
TIGRFAMs:TIGR00012 OrthoDB:EOG45QHFR IPI:IPI00370461
RefSeq:XP_002727066.1 RefSeq:XP_345917.1 Ensembl:ENSRNOT00000051023
GeneID:367050 KEGG:rno:367050 UCSC:RGD:1593195 NextBio:690541
Uniprot:D3ZMZ5
Length = 121
Score = 141 (54.7 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 37/92 (40%), Positives = 52/92 (56%)
Query: 334 ANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKENMRNLIRKEHKKYKPLDXXXX 393
+ L V+KVTGGAASKLSK V+RK V V++Q Q+E++R + E KYKPLD
Sbjct: 29 SQLCVSKVTGGAASKLSKTGVIRKCSACVLTVINQTQEESLRKFYKGE--KYKPLDLPPK 86
Query: 394 XXXXXXXXXXXHERKLKTLKEIRRRQAFPPRK 425
E +LKT K+ ++ +P R+
Sbjct: 87 KTTHRWLTK--QEEELKTKKQQQKEWLYPLRR 116
>GENEDB_PFALCIPARUM|PF11_0260 [details] [associations]
symbol:PF11_0260 "ribosomal protein L35,
putative" species:5833 "Plasmodium falciparum" [GO:0015934 "large
ribosomal subunit" evidence=ISS] InterPro:IPR001854 Pfam:PF00831
HAMAP:MF_00374 GO:GO:0006412 GO:GO:0003735 EMBL:AE014186
GO:GO:0015934 Gene3D:1.10.287.310 SUPFAM:SSF46561
TIGRFAMs:TIGR00012 HOGENOM:HOG000207749 KO:K02918
ProtClustDB:CLSZ2440708 RefSeq:XP_001347931.2
ProteinModelPortal:Q8IIB4 IntAct:Q8IIB4
EnsemblProtists:PF11_0260:mRNA GeneID:810807 KEGG:pfa:PF11_0260
EuPathDB:PlasmoDB:PF3D7_1124900 Uniprot:Q8IIB4
Length = 124
Score = 130 (50.8 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 38/119 (31%), Positives = 56/119 (47%)
Query: 309 VKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQ 368
VK ELRT + LR++K G +A K SKI VRK + RV V +Q
Sbjct: 4 VKAYELRTLKKKELLDKLDELKKELSGLRISKALGNSA-KNSKIHGVRKNVARVLTVYNQ 62
Query: 369 KQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPRKDL 427
K+K +R L + +KK+KP + ++ TL++ ++ Q FP RK L
Sbjct: 63 KRKMELRQLYK--NKKFKPYNLRKKLTKNKRLQLSPKQKAAMTLRQKKKVQNFPQRKYL 119
>UNIPROTKB|Q8IIB4 [details] [associations]
symbol:PF11_0260 "60S ribosomal protein L35, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0015934 "large
ribosomal subunit" evidence=ISS] InterPro:IPR001854 Pfam:PF00831
HAMAP:MF_00374 GO:GO:0006412 GO:GO:0003735 EMBL:AE014186
GO:GO:0015934 Gene3D:1.10.287.310 SUPFAM:SSF46561
TIGRFAMs:TIGR00012 HOGENOM:HOG000207749 KO:K02918
ProtClustDB:CLSZ2440708 RefSeq:XP_001347931.2
ProteinModelPortal:Q8IIB4 IntAct:Q8IIB4
EnsemblProtists:PF11_0260:mRNA GeneID:810807 KEGG:pfa:PF11_0260
EuPathDB:PlasmoDB:PF3D7_1124900 Uniprot:Q8IIB4
Length = 124
Score = 130 (50.8 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 38/119 (31%), Positives = 56/119 (47%)
Query: 309 VKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQ 368
VK ELRT + LR++K G +A K SKI VRK + RV V +Q
Sbjct: 4 VKAYELRTLKKKELLDKLDELKKELSGLRISKALGNSA-KNSKIHGVRKNVARVLTVYNQ 62
Query: 369 KQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPRKDL 427
K+K +R L + +KK+KP + ++ TL++ ++ Q FP RK L
Sbjct: 63 KRKMELRQLYK--NKKFKPYNLRKKLTKNKRLQLSPKQKAAMTLRQKKKVQNFPQRKYL 119
>DICTYBASE|DDB_G0288349 [details] [associations]
symbol:rpl35 "S60 ribosomal protein L35"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR001854 InterPro:IPR018254 Pfam:PF00831 PROSITE:PS00579
dictyBase:DDB_G0288349 GO:GO:0006412 GenomeReviews:CM000154_GR
GO:GO:0005840 EMBL:AAFI02000111 GO:GO:0003735 Gene3D:1.10.287.310
SUPFAM:SSF46561 TIGRFAMs:TIGR00012 eggNOG:COG0255 KO:K02918
OMA:LRTKSKE RefSeq:XP_636778.1 ProteinModelPortal:Q54J23 SMR:Q54J23
STRING:Q54J23 PRIDE:Q54J23 EnsemblProtists:DDB0231152
GeneID:8626581 KEGG:ddi:DDB_G0288349 ProtClustDB:CLSZ2440708
Uniprot:Q54J23
Length = 126
Score = 128 (50.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 37/117 (31%), Positives = 50/117 (42%)
Query: 308 KVKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K K ELRT ++LRVA+V SKL+KI VRKAI RV V +
Sbjct: 4 KTKAFELRTKNKTQLLEHLKELRTELSSLRVAQVKSPNPSKLAKIGTVRKAIARVLTVFN 63
Query: 368 QKQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPR 424
Q QK ++R + K+ P D + K+ TL+ + FP R
Sbjct: 64 QTQKNHLRAVYSKKSSSKIPTDLRYKKTRAIRRRLTNKQSKVVTLRVSKTATNFPQR 120
>SGD|S000002350 [details] [associations]
symbol:RPL35A "Ribosomal 60S subunit protein L35A"
species:4932 "Saccharomyces cerevisiae" [GO:0003735 "structural
constituent of ribosome" evidence=IEA;TAS] [GO:0005622
"intracellular" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000463 "maturation of
LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=TAS] [GO:0002181 "cytoplasmic translation"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR001854 InterPro:IPR018254 Pfam:PF00831 PROSITE:PS00579
SGD:S000002350 EMBL:BK006938 GO:GO:0003735 GO:GO:0030687
GO:GO:0002181 EMBL:X83276 PDB:4B6A PDBsum:4B6A GO:GO:0000463
GO:GO:0022625 Gene3D:1.10.287.310 SUPFAM:SSF46561
TIGRFAMs:TIGR00012 PDB:1K5Y PDB:1S1I PDB:3IZS PDB:3O58 PDB:3O5H
PDB:3U5E PDB:3U5I PDBsum:1K5Y PDBsum:1S1I PDBsum:3IZS PDBsum:3O58
PDBsum:3O5H PDBsum:3U5E PDBsum:3U5I PDB:2WW9 PDB:2WWA PDBsum:2WW9
PDBsum:2WWA KO:K02918 EMBL:M82913 EMBL:Z74239 PIR:S30770
RefSeq:NP_010090.1 RefSeq:NP_010145.1 ProteinModelPortal:P0CX84
SMR:P0CX84 EnsemblFungi:YDL136W EnsemblFungi:YDL191W GeneID:851336
GeneID:851419 KEGG:sce:YDL136W KEGG:sce:YDL191W CYGD:YDL191w
EvolutionaryTrace:P0CX84 NextBio:968405 ArrayExpress:P0CX84
GermOnline:YDL191W Uniprot:P0CX84
Length = 120
Score = 117 (46.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 36/117 (30%), Positives = 53/117 (45%)
Query: 309 VKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQ 368
VK ELRT A L+V K++ L KI+ VRK+I V V+++
Sbjct: 4 VKAYELRTKSKEQLASQLVDLKKELAELKVQKLS---RPSLPKIKTVRKSIACVLTVINE 60
Query: 369 KQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPRK 425
+Q+E +R L + KKY+P D E T K+ +++ AFP RK
Sbjct: 61 QQREAVRQLYKG--KKYQPKDLRAKKTRALRRALTKFEASQVTEKQRKKQIAFPQRK 115
>SGD|S000002295 [details] [associations]
symbol:RPL35B "Ribosomal 60S subunit protein L35B"
species:4932 "Saccharomyces cerevisiae" [GO:0002181 "cytoplasmic
translation" evidence=TAS] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=TAS] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0003735 "structural constituent of ribosome"
evidence=IEA;TAS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IDA] [GO:0005840
"ribosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR001854
InterPro:IPR018254 Pfam:PF00831 PROSITE:PS00579 SGD:S000002295
EMBL:BK006938 GO:GO:0003735 GO:GO:0030687 GO:GO:0002181 EMBL:X96876
GO:GO:0000463 GO:GO:0022625 Gene3D:1.10.287.310 SUPFAM:SSF46561
TIGRFAMs:TIGR00012 KO:K02918 PIR:S30770 RefSeq:NP_010090.1
RefSeq:NP_010145.1 EnsemblFungi:YDL136W EnsemblFungi:YDL191W
GeneID:851336 GeneID:851419 KEGG:sce:YDL136W KEGG:sce:YDL191W
NextBio:968405 EMBL:L02328 EMBL:Z74184 ProteinModelPortal:P0CX85
SMR:P0CX85 CYGD:YDL136w GeneTree:ENSGT00390000016384
ArrayExpress:P0CX85 GermOnline:YDL136W Uniprot:P0CX85
Length = 120
Score = 117 (46.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 36/117 (30%), Positives = 53/117 (45%)
Query: 309 VKCSELRTXXXXXXXXXXXXXXXXXANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQ 368
VK ELRT A L+V K++ L KI+ VRK+I V V+++
Sbjct: 4 VKAYELRTKSKEQLASQLVDLKKELAELKVQKLS---RPSLPKIKTVRKSIACVLTVINE 60
Query: 369 KQKENMRNLIRKEHKKYKPLDXXXXXXXXXXXXXXXHERKLKTLKEIRRRQAFPPRK 425
+Q+E +R L + KKY+P D E T K+ +++ AFP RK
Sbjct: 61 QQREAVRQLYKG--KKYQPKDLRAKKTRALRRALTKFEASQVTEKQRKKQIAFPQRK 115
>UNIPROTKB|G4MSD2 [details] [associations]
symbol:MGG_04455 "60S ribosomal protein L35" species:242507
"Magnaporthe oryzae 70-15" [GO:0043581 "mycelium development"
evidence=IEP] InterPro:IPR001854 Pfam:PF00831 HAMAP:MF_00374
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0043581
EMBL:CM001232 Gene3D:1.10.287.310 SUPFAM:SSF46561
TIGRFAMs:TIGR00012 RefSeq:XP_003713551.1 ProteinModelPortal:G4MSD2
SMR:G4MSD2 EnsemblFungi:MGG_04455T0 GeneID:2678153
KEGG:mgr:MGG_04455 Uniprot:G4MSD2
Length = 125
Score = 102 (41.0 bits), Expect = 0.00012, P = 0.00012
Identities = 29/89 (32%), Positives = 45/89 (50%)
Query: 336 LRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKENMRNLIRKEHKKYKPLDXXXXXX 395
LR+ K+ + +KL+KI +RK+I RV V++ KQ++ +R L K +KKY PLD
Sbjct: 33 LRIQKIAS-SGTKLTKIHDIRKSIARVLTVINLKQRQQLR-LFYK-NKKYLPLDLRAKQT 89
Query: 396 XXXXXXXXXHERKLKTLKEIRRRQAFPPR 424
+ K +R+Q F R
Sbjct: 90 RAIRRRLSKEDASRVLEKTKKRQQHFSQR 118
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 536 489 0.00082 119 3 11 22 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 46
No. of states in DFA: 610 (65 KB)
Total size of DFA: 266 KB (2138 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 47.78u 0.08s 47.86t Elapsed: 00:00:11
Total cpu time: 47.79u 0.08s 47.87t Elapsed: 00:00:11
Start: Thu Aug 15 11:02:27 2013 End: Thu Aug 15 11:02:38 2013