RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8363
(536 letters)
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex
non-fungal. The approx. 70 residue Med15 domain of the
ARC-Mediator co-activator is a three-helix bundle with
marked similarity to the KIX domain. The sterol
regulatory element binding protein (SREBP) family of
transcription activators use the ARC105 subunit to
activate target genes in the regulation of cholesterol
and fatty acid homeostasis. In addition, Med15 is a
critical transducer of gene activation signals that
control early metazoan development.
Length = 768
Score = 301 bits (772), Expect = 2e-93
Identities = 165/314 (52%), Positives = 213/314 (67%), Gaps = 8/314 (2%)
Query: 1 MVASP-ALVPSPSAPLSQSMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYRD 59
M+ SP AL+PSPS +SQS Q SP G LNTPGQ+ +SP QE+Q+YR+
Sbjct: 452 MIPSPPALMPSPSPQMSQSPASQRTIQQDMVSPGGPLNTPGQSS-VNSPANPQEEQLYRE 510
Query: 60 KIRQLSKYIEPLRRMIARAAND--DIEKTTKMKKLLEILQSPNKRMPLETLLKCEHVLEK 117
K +QLSKYIEPLRRMIA+ ND I+ +KMK LL+IL +P+ R PLETL KCE LEK
Sbjct: 511 KYKQLSKYIEPLRRMIAKIDNDEGRIKDLSKMKSLLDILSNPSSRCPLETLQKCEIALEK 570
Query: 118 L--DFKHSSLLRDHHPLLEAVSGALQSSNANHTLQRTFGPCLEILSGPLIKDLPLPVNRK 175
L + +PLLEAV LQS NHTL RTF P LE L GP IK LP+P ++
Sbjct: 571 LKNQMGTPTPPPLCNPLLEAVLANLQSPVFNHTLYRTFRPTLEALFGPDIKGLPVPAKKR 630
Query: 176 RVEE-PADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLDDRHLPCVPPIQVS 234
RVEE ++P VLQGEIARLDQ+FKV+LDP+ QS + I+L+C LDD++LP VPP+ +S
Sbjct: 631 RVEEDERQEIPHVLQGEIARLDQKFKVNLDPSHQSNNGTIKLICKLDDKNLPSVPPLALS 690
Query: 235 IPEDYPSHPPRCTM-GHEHNTTPFLTSVKNALESRIKKLPLKYSVSQLLDTWEMSVRQAC 293
+PE+YP P C++ E+N TPFL +V+ +L +R+ KLP +S++ LL+TWEMSVRQAC
Sbjct: 691 VPEEYPDQSPSCSLDEQEYNATPFLQTVQKSLHARLSKLPGLHSLTHLLNTWEMSVRQAC 750
Query: 294 APTRNPTSSPSISV 307
+P + SV
Sbjct: 751 SPNPTNVAPDFTSV 764
Score = 127 bits (320), Expect = 6e-31
Identities = 60/117 (51%), Positives = 86/117 (73%), Gaps = 2/117 (1%)
Query: 422 PPRKDLPLPVNRKRVEE-PADDVPEVLQGEIARLDQRFKVSLDPTQQSGSKAIQLVCWLD 480
P K LP+P ++RVEE ++P VLQGEIARLDQ+FKV+LDP+ QS + I+L+C LD
Sbjct: 618 PDIKGLPVPAKKRRVEEDERQEIPHVLQGEIARLDQKFKVNLDPSHQSNNGTIKLICKLD 677
Query: 481 DRHLPCVPPIQVSIPEDYPSHPPRCTM-GHEHNTTPFLTSVKNALESRIKKLPLKYS 536
D++LP VPP+ +S+PE+YP P C++ E+N TPFL +V+ +L +R+ KLP +S
Sbjct: 678 DKNLPSVPPLALSVPEEYPDQSPSCSLDEQEYNATPFLQTVQKSLHARLSKLPGLHS 734
>gnl|CDD|201463 pfam00831, Ribosomal_L29, Ribosomal L29 protein.
Length = 58
Score = 65.2 bits (160), Expect = 1e-13
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 312 SELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQK 369
ELR +EL ++L+ELK EL NLR K TG +I+ VR+ I R+ V+ ++
Sbjct: 2 KELRELSDEELKEKLKELKKELFNLRFQKATGQ-LENPHRIKEVRRDIARILTVLRER 58
>gnl|CDD|238243 cd00427, Ribosomal_L29_HIP, Ribosomal L29 protein/HIP. L29 is a
protein of the large ribosomal Subunit. A homolog,
called heparin/heparan sulfate interacting protein
(HIP), has also been identified in mammals. L29 is
located on the surface of the large ribosomal subunit,
where it participates in forming a protein ring that
surrounds the polypeptide exit channel, providing
structural support for the ribosome. L29 is involved in
forming the translocon binding site, along with L19,
L22, L23, L24, and L31e. In addition, L29 and L23 form
the interaction site for trigger factor (TF) on the
ribosomal surface, adjacent to the exit tunnel. L29
forms numerous interactions with L23 and with the 23S
rRNA. In some eukaryotes, L29 is referred to as L35,
which is distinct from L35 found in bacteria and some
eukaryotes (primarily plastids and mitochondria). The
mammalian homolog, HIP, is found on the surface of many
tissues and cell lines. It is believed to play a role in
cell adhesion and modulation of blood coagulation. It
has also been shown to inhibit apoptosis in cancer
cells.
Length = 57
Score = 64.8 bits (159), Expect = 1e-13
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 312 SELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQK 369
ELR K +EL ++L+ELK EL NLR K TG +IR VRK I R+ V+++K
Sbjct: 1 KELREKSDEELQEKLDELKKELFNLRFQKATGQ-LENPHRIRKVRKDIARIKTVLNEK 57
>gnl|CDD|223333 COG0255, RpmC, Ribosomal protein L29 [Translation, ribosomal
structure and biogenesis].
Length = 69
Score = 61.9 bits (151), Expect = 2e-12
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 308 KVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
K K ELR K +EL ++L ELK EL NLR TG +IR VR+ I R+ V+
Sbjct: 2 KAKRKELREKSVEELEEELRELKKELFNLRFQLATGQ-LENPHRIREVRRDIARILTVLR 60
Query: 368 QKQKE 372
+K+ E
Sbjct: 61 EKELE 65
>gnl|CDD|237751 PRK14549, PRK14549, 50S ribosomal protein L29P; Provisional.
Length = 69
Score = 60.0 bits (146), Expect = 1e-11
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 308 KVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
++ SE+R +E ++LEELK EL R GGA +IR +R+ I R+ +
Sbjct: 3 ILRASEIREMSPEEREEKLEELKLELLKERAQAAMGGAPENPGRIREIRRTIARILTIQR 62
Query: 368 QKQKEN 373
+K++E
Sbjct: 63 EKKREA 68
>gnl|CDD|129124 TIGR00012, L29, ribosomal protein L29. This model describes a
ribosomal large subunit protein, called L29 in
prokaryotic (50S) large subunits and L35 in eukaryotic
(60S) large subunits [Protein synthesis, Ribosomal
proteins: synthesis and modification].
Length = 55
Score = 57.3 bits (139), Expect = 8e-11
Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 313 ELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQ 368
ELR K K+EL K+L+ELK EL LR K TG A K +IR VR+ I R+ V+ +
Sbjct: 1 ELREKSKEELAKKLDELKKELFELRFQKATGQLA-KPHRIRQVRRDIARLLTVLRE 55
>gnl|CDD|178971 PRK00306, PRK00306, 50S ribosomal protein L29; Reviewed.
Length = 66
Score = 54.9 bits (133), Expect = 6e-10
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 310 KCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQK 369
K ELR +EL ++L ELK EL NLR K TG ++R VR+ I R+ V+ ++
Sbjct: 2 KAKELRELSVEELNEKLLELKKELFNLRFQKATGQLE-NTHRLREVRRDIARIKTVLRER 60
Query: 370 QKEN 373
+
Sbjct: 61 ELGA 64
>gnl|CDD|234773 PRK00461, rpmC, 50S ribosomal protein L29; Reviewed.
Length = 87
Score = 42.0 bits (99), Expect = 4e-05
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 312 SELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQK 371
ELR K +EL K + ELK EL LR T G+ + KI+ +RK I R+ ++++++
Sbjct: 3 KELRKKSVEELEKLVIELKAELFTLRFKNAT-GSLDQTHKIKEIRKDIARILTILNEREL 61
Query: 372 ENMRNL--IRKEHKK 384
E N +K KK
Sbjct: 62 EEKENNKEPKKNTKK 76
>gnl|CDD|130658 TIGR01597, PYST-B, Plasmodium yoelii subtelomeric family PYST-B.
This model represents a paralogous family of Plasmodium
yoelii genes preferentially located in the subtelomeric
regions of the chromosomes. There are no obvious
homologs to these genes in any other organism.
Length = 255
Score = 38.7 bits (90), Expect = 0.004
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 313 ELRTKDKK------ELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVM 366
+L DKK +L K+LEELK EL N ++T KI + + V
Sbjct: 103 DLNNVDKKTKKLINKLQKELEELKKELDNEMNDELT--IQPIHDKIIIKKDENNSVSEHE 160
Query: 367 HQKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLK 410
KQ EN +N EH+++ K +R+L K +KL
Sbjct: 161 DFKQLENEKNSSVSEHEEFDIASSDNLKI---KRKLKKLVKKLI 201
>gnl|CDD|221710 pfam12685, SpoIIIAH, SpoIIIAH-like protein. Stage III sporulation
protein AH (SpoIIIAH) is a protein that is involved in
forespore engulfment. It forms a channel with SpoIIIAH
that is open on the forespore end and closed (or gated)
on the mother cell end. This allows sigma-E-directed
gene expression in the mother-cell compartment of the
sporangium to trigger the activation of sigma-G
forespore-specific gene expression by a pathway of
intercellular signaling. This family of proteins is
found in bacteria, archaea and eukaryotes and so must
have a wider function that in sporulation. Proteins in
this family are typically between 174 and 223 amino
acids in length.
Length = 141
Score = 35.6 bits (83), Expect = 0.020
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 58 RDKIRQLSKYIEPLRRMIARAANDDIEKTTKMKKLLEILQSPNKRMPLETLLK 110
R++ R SK IE L+ +IA EK KLLE+ + K M +E LLK
Sbjct: 40 REQKR--SKQIETLKEIIANENASAEEKKEAQDKLLELTELAEKEMAIENLLK 90
>gnl|CDD|151033 pfam10460, Peptidase_M30, Peptidase M30. This family contains the
metallopeptidase hyicolysin. Hyicolysin has a zinc ion
which is liganded by two histidine and one glutamate
residue.
Length = 366
Score = 34.5 bits (79), Expect = 0.13
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 2 VASPALVPSPSAPLSQSMPGQMRSVGMAPSPSGSLNTPGQAQPTSSP 48
VAS AL+P+PSAP P + P+ S T ++ PTS P
Sbjct: 283 VASGALLPAPSAPAGFGFPARSDGGFTLPAIDPSAYTGLRSLPTSVP 329
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 33.9 bits (78), Expect = 0.25
Identities = 20/113 (17%), Positives = 49/113 (43%), Gaps = 10/113 (8%)
Query: 316 TKDKKELLKQLEELKTEL-------ANLRVAKVTGGAASKL--SKIRVVRKAILRVYIVM 366
++K+EL ++L EL++EL LR A + ++ + + + Y
Sbjct: 883 EEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDT 942
Query: 367 HQKQKENMRNLIRKEHKKYKPLDLRPKKT-RALRRRLTKHERKLKTLKEIRRR 418
+ + E + +E + P++LR + + R + + + + L+E + +
Sbjct: 943 LETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEK 995
Score = 32.0 bits (73), Expect = 0.89
Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 3/126 (2%)
Query: 313 ELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKE 372
E ++ +EL ++L+EL+ EL L +L ++ K L + +++KE
Sbjct: 831 EELEEEIEELEEKLDELEEELEELEKELE--ELKEELEELE-AEKEELEDELKELEEEKE 887
Query: 373 NMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRKDLPLPVN 432
+ +R+ + L +K R L +L+ + +D
Sbjct: 888 ELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETEL 947
Query: 433 RKRVEE 438
+ +E
Sbjct: 948 EREIER 953
Score = 28.9 bits (65), Expect = 9.7
Identities = 18/108 (16%), Positives = 44/108 (40%), Gaps = 17/108 (15%)
Query: 307 VKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVM 366
+ L +EL KQLE+L+ + + +++R + A+L +
Sbjct: 184 TEENLERLEDL-LEELEKQLEKLERQAEKAERYQ------ELKAELRELELALLLAKLKE 236
Query: 367 HQKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKE 414
+K+ E + + + ++ + L+ L + E++++ LK
Sbjct: 237 LRKELEELEEELSRLEEELE----------ELQEELEEAEKEIEELKS 274
>gnl|CDD|218912 pfam06148, COG2, COG (conserved oligomeric Golgi) complex
component, COG2. The COG complex comprises eight
proteins COG1-8. The COG complex plays critical roles in
Golgi structure and function. The proposed function of
the complex is to mediate the initial physical contact
between transport vesicles and their membrane targets. A
comparable role in tethering vesicles has been suggested
for at least six additional large multisubunit
complexes, including the exocyst, a complex that
mediates trafficking to the plasma membrane. COG2
structure reveals a six-helix bundle with few conserved
surface features but a general resemblance to recently
determined crystal structures of four different exocyst
subunits. These bundles inCOG2 may act as platforms for
interaction with other trafficing proteins including
SNAREs (soluble N-ethylmaleimide factor attachment
protein receptors) and Rabs.
Length = 133
Score = 31.5 bits (72), Expect = 0.37
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 57 YRDKIRQLS-------KYIEPLRRMIARAANDDIEKTTKMKKLLEILQSPNKRMPLETLL 109
+K+ ++ K +E +R + +++E + KK L K+ L+ LL
Sbjct: 67 LDEKLERIRVPLLALRKEVESVRSELEARL-EEVEAKLEEKKDLR-----EKKESLKLLL 120
Query: 110 KCEHVLEKLDF 120
+HV+EKL+
Sbjct: 121 DLDHVVEKLED 131
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 33.1 bits (76), Expect = 0.45
Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 12/105 (11%)
Query: 320 KELLKQLEELKTELANLR--VAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKENMRNL 377
++ +K+LEELK E+ L + + G KIR + + I ++ K+ + L
Sbjct: 227 EKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERI--------EELKKEIEEL 278
Query: 378 --IRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQA 420
KE K+ K K R+++ +
Sbjct: 279 EEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEI 323
Score = 30.4 bits (69), Expect = 3.0
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 317 KDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAI------LRVYIVMHQKQ 370
K+ KE+ ++ +L+ EL L S+L K++ + + + L+ Y + ++
Sbjct: 466 KELKEIEEKERKLRKELRELEKVL---KKESELIKLKELAEQLKELEEKLKKYNLEELEK 522
Query: 371 K----ENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKE 414
K E ++ + K + K L +K L+++L + E+KL L+E
Sbjct: 523 KAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEE 570
Score = 29.6 bits (67), Expect = 5.3
Identities = 17/104 (16%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 315 RTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKENM 374
RT++ +EL+K+ E+ E+ + +++ ++ + K + + ++ KE +
Sbjct: 187 RTENIEELIKEKEKELEEVLR-EINEISSELPELREELEKLEKEVKEL-----EELKEEI 240
Query: 375 RNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRR 418
L ++ +K R L R+ + +++++ L+E +
Sbjct: 241 EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKE 284
Score = 29.3 bits (66), Expect = 7.1
Identities = 19/105 (18%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 317 KDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKENMRN 376
K K+E+ +++ ++ + L+ I ++KA + + + +E+ +
Sbjct: 398 KAKEEIEEEISKITARIGELK-----KEIKELKKAIEELKKAKGKCPVCGRELTEEHRKE 452
Query: 377 LIRKEHKKYKPLDLRPKKT----RALRRRLTKHERKLKTLKEIRR 417
L+ + + K ++ K+ R LR+ L + E+ LK E+ +
Sbjct: 453 LLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIK 497
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 31.1 bits (71), Expect = 1.3
Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 16/113 (14%)
Query: 49 CPTQEDQVYRDKIRQLSKYIEPLRRMIA------RAANDDIEK-TTKMKKLLEILQSPNK 101
C E ++K+++L + I + + + IE T K +L + K
Sbjct: 201 CDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260
Query: 102 RMPLETLLKCEHVLEKLDFKHSSLLRDHHPLLEAVSGALQSSNANHTLQRTFG 154
+ L +C FK L++ LL++++G + + +TL T+
Sbjct: 261 K-----LEQCRG----FTFKEIEKLKEQLKLLQSLTGWKITKLSGNTLSMTYD 304
>gnl|CDD|225551 COG3006, MukF, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 440
Score = 31.0 bits (70), Expect = 1.5
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 273 PLKYSVSQLLDTWEMSVRQACAPTRNPTSSPSISVKVKCSELRTKDKKELLKQLEELKTE 332
PLKYSV+++ D+ +++ R SVK ++L KD + + E L +E
Sbjct: 159 PLKYSVAEIFDSIDLTQRL--------MDEQQQSVKDDIAQLLNKDWRAAISSCELLLSE 210
Query: 333 L-ANLRVAKVTGGAA 346
LR + T AA
Sbjct: 211 TSGTLRELQDTLEAA 225
>gnl|CDD|129390 TIGR00289, TIGR00289, TIGR00289 family protein. Homologous
proteins related to MJ0570 of Methanococcus jannaschii
include both the apparent orthologs found by this model
above the trusted cutoff, the much longer protein
YLR143W from Saccharomyces cerevisiae, and second
homologous proteins from Archaeoglobus fulgidus and
Pyrococcus horikoshii that appear to represent a second
orthologous group [Hypothetical proteins, Conserved].
Length = 222
Score = 30.6 bits (69), Expect = 1.6
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 306 SVKVKCSELRTKDKKELLKQLEELKTELANLRV-AKVTGGAASKLSKIRVVR 356
+V + +L T ++E K++E+L +L L V A G S K R+ +
Sbjct: 56 AVGIPLIKLYTSGEEE--KEVEDLAGQLGELDVEALCIGAIESNYQKSRIDK 105
>gnl|CDD|150982 pfam10400, Vir_act_alpha_C, Virulence activator alpha C-term. This
structure is homo-dimeric, and the domain here is the
C-terminal half of the structure, often associated with
PadR upstream, (pfam03551), which is a transcriptional
regulator.
Length = 90
Score = 28.8 bits (65), Expect = 1.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 396 RALRRRLTKHERKLKTLKEIRRR 418
L RL HE KL T + I +R
Sbjct: 24 AELEERLALHEEKLATYERIEKR 46
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 30.9 bits (70), Expect = 1.9
Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 16/127 (12%)
Query: 308 KVKCSELRTKDKKELLKQLE----ELKTELANLRVAKVTGGAASKL-SKIRVVRKAILRV 362
+ +L+ + KE L+QLE ELK L LR+ + +L +++ ++K + +
Sbjct: 546 EELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKEL 605
Query: 363 YIVMHQKQ-----------KENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKT 411
+ Q + + + + + + L+L+ + L+ L + E K++
Sbjct: 606 EERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEE 665
Query: 412 LKEIRRR 418
L+ RR
Sbjct: 666 LEAEIRR 672
Score = 30.9 bits (70), Expect = 1.9
Identities = 21/114 (18%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 312 SELRTKDKKELLKQLEELKTELANL-----RVAKVTGGAASKLSKIRVVRKAILRVYIVM 366
E ++ +E +++LEEL+ E+ L + + L K++ + + + +
Sbjct: 279 LERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEK-LEEK 337
Query: 367 HQKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRL-TKHERKLKTLKEIRRRQ 419
+K + + L ++++ K L+ R K+ L + E+ L+ LK++
Sbjct: 338 LEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAI 391
Score = 29.7 bits (67), Expect = 5.1
Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 18/119 (15%)
Query: 308 KVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
+ + EL + +EL ++L K E A LR ++ ++ + + I +
Sbjct: 472 EKELLELYELELEELEEELSREK-EEAELRE---------EIEELEKELRELEEELIELL 521
Query: 368 QKQKENMRNLIRK--------EHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRR 418
+ ++ L K E + L+ ++ + R+L ++LK L E R
Sbjct: 522 ELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRL 580
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 30.7 bits (70), Expect = 2.1
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 30/110 (27%)
Query: 305 ISVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYI 364
I V V EL+ + KEL ++L+EL+ EL ++ ++ + K
Sbjct: 323 IEVGVDFPELKEE-LKELEEELKELEEELEKIK------------KLLKKLPKKARG--- 366
Query: 365 VMHQKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKE 414
+ R + K + + L L + E +LK LKE
Sbjct: 367 ----QLPPEKREQLEKLLETKE----------KLSEELEELEEELKELKE 402
>gnl|CDD|236995 PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase;
Provisional.
Length = 693
Score = 30.8 bits (71), Expect = 2.2
Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 12/70 (17%)
Query: 314 LRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKEN 373
+ DK+E L+ +K E+ + + + + K I + + +K+
Sbjct: 257 YQITDKQEREAALDAIKEEV----LEALAAEEEEEEDE-----KEIKEAF---KKLEKKI 304
Query: 374 MRNLIRKEHK 383
+R I +E
Sbjct: 305 VRRRILEEGI 314
>gnl|CDD|202828 pfam03955, Adeno_PIX, Adenovirus hexon-associated protein (IX).
Hexon (PF01065) is the major coat protein from
adenovirus type 2. Hexon forms a homo-trimer. The 240
copies of the hexon trimer are organised so that 12 lie
on each of the 20 facets. The central 9 hexons in a
facet are cemented together by 12 copies of polypeptide
IX.
Length = 109
Score = 29.0 bits (65), Expect = 2.2
Identities = 24/105 (22%), Positives = 34/105 (32%), Gaps = 24/105 (22%)
Query: 255 TPFLT--------SVKNALESRIKKLPLKYSVSQLLDTW-------------EMSVRQAC 293
TPFLT +N S + P+ + S L S +A
Sbjct: 6 TPFLTARLPSWAGVRQNVTGSNVDGRPVAPANSSTLTYATVGSSTLDTAAAAAASTSRAA 65
Query: 294 APTRNPTSSPSI--SVKVKCSELRTKDKKELLKQLEELKTELANL 336
A R +K+ + L LL +LE L +LA L
Sbjct: 66 ATARPLAEQVESLSELKLNMTALE-DSLTVLLAELERLTQQLAAL 109
>gnl|CDD|112684 pfam03882, KicB, KicB killing factor. The kicA and kicB genes are
found upstream of mukB. It has been suggested that the
kicB gene encodes a killing factor and the kicA gene
codes for a protein that suppresses the killing function
of the kicB gene product. It was also demonstrated that
KicA and KicB can function as a post-segregational
killing system, when the genes are transferred from the
E. coli chromosome onto a plasmid.
Length = 440
Score = 30.3 bits (68), Expect = 2.6
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 273 PLKYSVSQLLDTWEMSVRQACAPTRNPTSSPSISVKVKCSELRTKDKKELLKQLEELKTE 332
PLKYSV+++ D+ +++ R SVK ++L KD + + E L +E
Sbjct: 159 PLKYSVAEIFDSIDLTQRL--------MDEQQQSVKDDIAQLLNKDWRAAISSCELLLSE 210
Query: 333 L-ANLRVAKVTGGAA 346
LR + T AA
Sbjct: 211 TSGTLRELQDTLEAA 225
>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Proteins destined
for proteasome-mediated degradation may be
ubiquitinated. Ubiquitination follows conjugation of
ubiquitin to a conserved cysteine residue of UBC
homologues. TSG101 is one of several UBC homologues that
lacks this active site cysteine.
Length = 139
Score = 29.1 bits (66), Expect = 2.7
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 230 PIQVSIPEDYPSHPPRCTM 248
+ + PEDYP PP+
Sbjct: 47 KLDIEFPEDYPFKPPKVKF 65
Score = 29.1 bits (66), Expect = 2.7
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 489 PIQVSIPEDYPSHPPRCTM 507
+ + PEDYP PP+
Sbjct: 47 KLDIEFPEDYPFKPPKVKF 65
>gnl|CDD|238509 cd01038, Endonuclease_DUF559, Domain of unknown function, appears
to be related to a diverse group of endonucleases.
Length = 108
Score = 28.7 bits (65), Expect = 2.8
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 396 RALRRRLTKHERKLKTLKEIRRRQAF 421
R LRR T ER L E+RRR+
Sbjct: 7 RELRRNQTDAERLLWQ--ELRRRRLN 30
>gnl|CDD|237024 PRK11922, PRK11922, RNA polymerase sigma factor; Provisional.
Length = 231
Score = 29.5 bits (67), Expect = 4.0
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 21 GQMRSVGMAPSPSGSLNTPGQAQPTSSPCPTQEDQVYRDKIRQL 64
+ R V +A S G+ P + P E R +IR L
Sbjct: 99 RRRRLVNLAEMVMASTIAGGERTPLADPAEDPERAAARREIRAL 142
>gnl|CDD|217443 pfam03234, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain
pfam08565. Expression of a construct consisting of only
the N-terminal domain of Saccharomyces pombe Cdc37
results in cellular viability. This indicates that
interactions with the cochaperone Hsp90 may not be
essential for Cdc37 function.
Length = 172
Score = 29.0 bits (65), Expect = 4.0
Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
Query: 313 ELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKE 372
E R ++ +EL K+ L + ++ L + V K++ + + E
Sbjct: 42 EQRKQEIEELEKERIMNDRLLERVD-KLLSELKEESLDSSQAVMKSLNENFTDKENVEPE 100
Query: 373 NMR-NLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTL-KEIRRR 418
N + ++ ++ K AL L KH KLK KE+ ++
Sbjct: 101 QPTYNEMVEDLFDQVKDEVDEKNGAALIEELQKHRDKLKKEQKELLKK 148
>gnl|CDD|183349 PRK11869, PRK11869, 2-oxoacid ferredoxin oxidoreductase subunit
beta; Provisional.
Length = 280
Score = 29.4 bits (66), Expect = 4.1
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 38 TPGQAQPTSSP---CPTQEDQVYRDKIRQLSKYIEPLRRMIARAANDDIEKT 86
T GQA PT+ PTQ V+ + ++ I +AR + DIE+T
Sbjct: 121 TKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEET 172
>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase.
Length = 539
Score = 29.7 bits (66), Expect = 4.2
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 311 CSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRK-AILRVYIVMHQK 369
CS L KD+ L+ L+ E +V+K K +I + R+ L++++V+
Sbjct: 363 CSPLWVKDRYSLIDALKT-NPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLY 421
Query: 370 QKENMRNLIR 379
EN+RN IR
Sbjct: 422 GSENLRNFIR 431
>gnl|CDD|214735 smart00591, RWD, domain in RING finger and WD repeat containing
proteins and DEXDc-like helicases subfamily related to
the UBCc domain.
Length = 107
Score = 28.1 bits (63), Expect = 4.9
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 231 IQVSIPEDYPSHPPRCTMGH-EHNTTPFLTSVKNALESRIKKLPLKYSVSQLL 282
+QV +PE+YP P ++ + E + L + LE ++ + + +L+
Sbjct: 45 LQVKLPENYPDEAPPISLLNSEGLSDEQLAELLKKLEEIAEENLGEVMIFELV 97
>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III
synthetase/uroporphyrin-III C-methyltransferase;
Reviewed.
Length = 656
Score = 29.7 bits (67), Expect = 5.0
Identities = 10/49 (20%), Positives = 16/49 (32%)
Query: 3 ASPALVPSPSAPLSQSMPGQMRSVGMAPSPSGSLNTPGQAQPTSSPCPT 51
A A P+ +AP M S + P+ + P + P
Sbjct: 266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPE 314
>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain
homologues. Proteins destined for proteasome-mediated
degradation may be ubiquitinated. Ubiquitination follows
conjugation of ubiquitin to a conserved cysteine residue
of UBC homologues. This pathway functions in regulating
many fundamental processes required for cell
viability.TSG101 is one of several UBC homologues that
lacks this active site cysteine.
Length = 145
Score = 28.4 bits (64), Expect = 5.1
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 230 PIQVSIPEDYPSHPPRCTM 248
+ + PEDYP PP+
Sbjct: 48 KLTIEFPEDYPFKPPKVKF 66
Score = 28.4 bits (64), Expect = 5.1
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 489 PIQVSIPEDYPSHPPRCTM 507
+ + PEDYP PP+
Sbjct: 48 KLTIEFPEDYPFKPPKVKF 66
>gnl|CDD|204349 pfam09949, DUF2183, Uncharacterized conserved protein (DUF2183).
This domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 99
Score = 27.5 bits (62), Expect = 5.6
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 387 PLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAFPPRK 425
PL LR + HE K +++I R FP RK
Sbjct: 29 PLLLRDWGPSLTSFFKSGHEHKRDAIRKILR--DFPDRK 65
>gnl|CDD|119431 cd05171, PIKKc_ATM, Ataxia telangiectasia mutated (ATM), catalytic
domain; The ATM catalytic domain subfamily is part of a
larger superfamily that includes the catalytic domains
of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
RIO kinases. ATM is a member of the phosphoinositide
3-kinase-related protein kinase (PIKK) subfamily. PIKKs
have intrinsic serine/threonine kinase activity and are
distinguished from other PKs by their unique catalytic
domain, similar to that of lipid PI3K, and their large
molecular weight (240-470 kDa). ATM contains a FAT
(FRAP, ATM and TRRAP) domain, a catalytic domain, and a
FATC domain at the C-terminus. ATM is critical in the
response to DNA double strand breaks (DSBs) caused by
radiation. It is activated at the site of a DSB and
phosphorylates key substrates that trigger pathways that
regulate DNA repair and cell cycle checkpoints at the
G1/S, S phase, and G2/M transition. Patients with the
human genetic disorder Ataxia telangiectasia (A-T),
caused by truncating mutations in ATM, show genome
instability, increased cancer risk, immunodeficiency,
compromised mobility, and neurodegeneration. A-T
displays clinical heterogeneity, which is correlated to
the degree of retained ATM activity.
Length = 279
Score = 29.1 bits (66), Expect = 5.8
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 382 HKKYKPLDLRPKKTRALRRRLTK--HERKLKTLKEI 415
H++Y+P D +K R + K +E +LK +I
Sbjct: 105 HERYRPGDWTARKCRKAMAEVQKESNEERLKVFLKI 140
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional.
Length = 900
Score = 29.4 bits (67), Expect = 6.0
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 320 KELLKQLEELKTELANLRVAKVTGGAASKLSKIRVV 355
KE K++E+L+ ELA L +++ A ++ ++VV
Sbjct: 771 KEQKKEIEKLRKELAELLASEL-LSKAEEVGGVKVV 805
>gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit;
Provisional.
Length = 843
Score = 29.3 bits (66), Expect = 6.2
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 61 IRQLSKYI-EPLRRMIARAANDDIEKTTKM-KKLLEILQSPNKRMPLETLLKCEHVLEKL 118
R ++ EP++++I ND +K M +KL L+S K + + L+K V++
Sbjct: 268 KRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMK--RVMQTW 325
Query: 119 DFKHSSLL 126
+LL
Sbjct: 326 LPASDALL 333
>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 520
Score = 29.0 bits (65), Expect = 6.7
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 63 QLSKYIEPLRRMIA-RAANDDIEKTTKMKKLLEILQSPNKRMPLET 107
QL Y+E L + I A+ DD EK+ ++K+LL+ + S + ++ LE
Sbjct: 9 QLKAYLELLEQPIELVASLDDSEKSKEIKELLDEIASLSDKISLEE 54
>gnl|CDD|203324 pfam05743, UEV, UEV domain. This family includes the eukaryotic
tumour susceptibility gene 101 protein (TSG101). Altered
transcripts of this gene have been detected in sporadic
breast cancers and many other human malignancies.
However, the involvement of this gene in neoplastic
transformation and tumorigenesis is still elusive.
TSG101 is required for normal cell function of embryonic
and adult tissues but that this gene is not a tumour
suppressor for sporadic forms of breast cancer. This
family is related to the ubiquitin conjugating enzymes.
Length = 119
Score = 27.6 bits (62), Expect = 6.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 230 PIQVSIPEDYPSHPPRC 246
PI + +P+ YP PP C
Sbjct: 51 PILIWLPDTYPFSPPIC 67
Score = 27.6 bits (62), Expect = 6.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 489 PIQVSIPEDYPSHPPRC 505
PI + +P+ YP PP C
Sbjct: 51 PILIWLPDTYPFSPPIC 67
>gnl|CDD|222469 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV.
The binding of the LYPxL motif of late HIV p6Gag and
EIAV p9Gag to this domain is necessary for viral
budding.This domain is generally central between an
N-terminal Bro1 domain, pfam03097 and a C-terminal
proline-rich domain. The retroviruses thus used this
domain to hijack the ESCRT system of the cell.
Length = 292
Score = 28.8 bits (65), Expect = 7.0
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 22/118 (18%)
Query: 278 VSQLLDTWEMSVRQACAPTRN-----PTSSPSISVKVKCSELRTKDKKELLKQLEELKTE 332
+ L+ E ++ P P+SSPS + +V ++ +ELL +L ELK E
Sbjct: 103 LRSKLEEHEENLELLSGPEEELEALLPSSSPSKTPEVS-EQI--SRLRELLNKLNELKAE 159
Query: 333 LANLRVAKVTGGAASKLSKIRVVRKA--ILRVYIVMHQKQKENMRNLIRKEHKKYKPL 388
L L +++ + I ++ I +++ N L +E KK+ PL
Sbjct: 160 REKL------------LEELKEKAQDDDISKLLIALNKLGSSNEEQLFEEELKKFDPL 205
>gnl|CDD|113256 pfam04480, DUF559, Protein of unknown function (DUF559).
Length = 109
Score = 27.3 bits (61), Expect = 7.1
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 396 RALRRRLTKHERKLKTLKEIRRRQAFPPRKDLPL 429
R LRR T ERKL L RR F R+ P+
Sbjct: 8 RRLRRDQTDAERKLWQLLRNRRLNGFKFRRQKPI 41
>gnl|CDD|225408 COG2852, COG2852, Very-short-patch-repair endonuclease
[Replication, recombination, and repair].
Length = 129
Score = 27.7 bits (62), Expect = 7.2
Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 389 DLRPKKTRA--LRRRLTKHERKLKTLKEIRRRQAFPPRKDLPLPVNRKRV 436
RA LRR T E+ L RR F R+ P+ R V
Sbjct: 11 YNDRLTQRARRLRRDQTDAEKALWQHLRNRRLNGFKFRRQ--QPIGRYIV 58
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 29.3 bits (66), Expect = 7.6
Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 25/108 (23%)
Query: 312 SELRTKDKK--ELLKQLEELKTELA--NLRVAKVTGGAASKLSKIRVVRKAILRVYIVMH 367
ELR + K EL ++LEEL+ +LA LR+ + + ++ Y +
Sbjct: 901 EELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE-------YSLTL 953
Query: 368 QKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEI 415
++ + RRRL + E K+K L +
Sbjct: 954 EEAEALENK--------------IEDDEEEARRRLKRLENKIKELGPV 987
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 28.9 bits (66), Expect = 7.8
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 306 SVKVKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVV 355
+K K SEL + + LL++L+EL+ EL L+ A L++ + V
Sbjct: 709 LLKAKPSELPERVEA-LLEELKELEKELEQLKAKLAAAAAGDLLAQAKEV 757
>gnl|CDD|233397 TIGR01405, polC_Gram_pos, DNA polymerase III, alpha chain,
Gram-positive type. This model describes a polypeptide
chain of DNA polymerase III. Full-length homologs of
this protein are restricted to the Gram-positive
lineages, including the Mycoplasmas. This protein is
designated alpha chain and given the gene symbol polC,
but is not a full-length homolog of other polC genes.
The N-terminal region of about 200 amino acids is rich
in low-complexity sequence, poorly alignable, and not
included n this model [DNA metabolism, DNA replication,
recombination, and repair].
Length = 1213
Score = 28.9 bits (65), Expect = 9.7
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 10/112 (8%)
Query: 282 LDTWEMSVRQ---ACAPTRNPTSSPSISVKVKCSELRTKDKKELLKQLEELKTELANLRV 338
++ + R+ A NP + +V RT + E+L + L E A V
Sbjct: 510 IEPEDKIYRKILVASQGLGNPLNRHFNPKEVPELHFRTTN--EMLDEFSFLGEEKAYEIV 567
Query: 339 AKVTGGAASKLSKIRVVRKAILRVYIVMHQKQKENMRNLI-RKEHKKY-KPL 388
+ T A ++ +I+ ++ ++Y + E +R+L K Y PL
Sbjct: 568 VENTNKIADQIEEIQPIKD---KLYTPKIEGADEKIRDLTYENAKKIYGDPL 616
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.386
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,116,139
Number of extensions: 2655684
Number of successful extensions: 3823
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3753
Number of HSP's successfully gapped: 135
Length of query: 536
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 434
Effective length of database: 6,413,494
Effective search space: 2783456396
Effective search space used: 2783456396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.3 bits)