RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8363
(536 letters)
>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 65
Score = 71.5 bits (176), Expect = 2e-16
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 309 VKCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQ 368
+ E+R E +L++LKTEL N R + GGA +I+ +RKAI R+ + +
Sbjct: 3 LHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGE 62
Query: 369 K 369
+
Sbjct: 63 E 63
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus
radiodurans [TaxId: 1299]}
Length = 66
Score = 66.2 bits (162), Expect = 1e-14
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 310 KCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQK 369
K SE+R + K+++ K EL LR G ++ ++R +R+ + ++ V +
Sbjct: 2 KPSEMRNLQATDFAKEIDARKKELMELRFQAAAGQ-LAQPHRVRQLRREVAQLNTVKAEL 60
Query: 370 QKE 372
++
Sbjct: 61 ARK 63
>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Escherichia
coli [TaxId: 562]}
Length = 60
Score = 63.5 bits (155), Expect = 1e-13
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 310 KCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQK 369
K ELR K +EL +L L E NLR+ +G + ++ VR+ + RV ++++K
Sbjct: 2 KAKELREKSVEELNTELLNLLREQFNLRMQAASGQ-LQQSHLLKQVRRDVARVKTLLNEK 60
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga
maritima [TaxId: 2336]}
Length = 66
Score = 63.1 bits (154), Expect = 2e-13
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 310 KCSELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVYIVMHQK 369
K SELR +EL LEE K +L LR G S I++ ++ I R+ ++ ++
Sbjct: 2 KASELRNYTDEELKNLLEEKKRQLMELRFQLAMGQ-LKNTSLIKLTKRDIARIKTILRER 60
Query: 370 Q 370
+
Sbjct: 61 E 61
>d2j0121 a.2.2.1 (2:12-62) Ribosomal protein L29 (L29p) {Thermus
thermophilus [TaxId: 274]}
Length = 51
Score = 50.3 bits (121), Expect = 4e-09
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 313 ELRTKDKKELLKQLEELKTELANLRVAKVTGGAASKLSKIRVVRKAILRVY 363
E R EL K + E K EL LR G S+ KIR +++ I R+
Sbjct: 1 EARKLSPVELEKLVREKKRELMELRFQASI-GQLSQNHKIRDLKRQIARLL 50
>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase
{Escherichia coli, gene lpxA [TaxId: 562]}
Length = 262
Score = 29.4 bits (65), Expect = 1.0
Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 1/88 (1%)
Query: 360 LRVYIVMHQKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLK-TLKEIRRR 418
+ + ++ + + ++ Y + K + + IR
Sbjct: 159 VHQFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNA 218
Query: 419 QAFPPRKDLPLPVNRKRVEEPADDVPEV 446
R L + + E A+ PEV
Sbjct: 219 YKLIYRSGKTLDEVKPEIAELAETYPEV 246
>d1t98a2 a.47.6.1 (A:119-281) Chromosome partition protein MukF
(KicB), C-terminal domain {Escherichia coli [TaxId:
562]}
Length = 163
Score = 27.5 bits (61), Expect = 2.5
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 273 PLKYSVSQLLDTWEMSVRQACAPTRNPTSSPSISVKVKCSELRTKDKKELLKQLEELKTE 332
PLKYSV+++ D+ +++ R + VK ++L KD + + E L +E
Sbjct: 41 PLKYSVAEIFDSIDLTQRLMDEQQQ--------QVKDDIAQLLNKDWRAAISSCELLLSE 92
Query: 333 LA-NLR 337
+ LR
Sbjct: 93 TSGTLR 98
>d2bvla1 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile [TaxId:
1496]}
Length = 542
Score = 27.6 bits (61), Expect = 4.0
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 54 DQVYRDKIRQLSKYIEPLRRMIARAANDDIEKTTKMKKL 92
Y +I +L+ YIE I + + +D+ + K
Sbjct: 211 SNEYSKEIDELNTYIEESLNKITQNSGNDVRNFGEFKNG 249
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 25.2 bits (55), Expect = 6.1
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 327 EELKTELANLRVAKVTGGAASKLSKIRVVRKAI-----LRVYIVMHQKQKENMRNLIRKE 381
+ +K +LR V K S+ +++ KA +R HQ+ ++++
Sbjct: 15 DHIKDSFHSLR-DSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALL 73
Query: 382 HKKYKPL 388
++ + L
Sbjct: 74 EQQVRAL 80
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 26.1 bits (56), Expect = 9.4
Identities = 16/94 (17%), Positives = 24/94 (25%)
Query: 362 VYIVMHQKQKENMRNLIRKEHKKYKPLDLRPKKTRALRRRLTKHERKLKTLKEIRRRQAF 421
+ V+ L R H R L R L +
Sbjct: 83 LDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADL 142
Query: 422 PPRKDLPLPVNRKRVEEPADDVPEVLQGEIARLD 455
+ LPV+ K ++ LQ R+D
Sbjct: 143 GAFEHHVLPVSGKDTDQALQSAINALQSGRFRID 176
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain
{Thermotoga maritima [TaxId: 2336]}
Length = 281
Score = 26.2 bits (58), Expect = 9.6
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 21/78 (26%)
Query: 364 IVMHQKQKENMRNLIRKEHKKYKPLDLRPKK-----------TRALRRRLTKHERKLKTL 412
I M+ + +N+ + E+ KY + L ++ L R ++E++ L
Sbjct: 164 IAMYLQGVDNVYEVQWNENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRL 223
Query: 413 KEIRRRQAFPPRKDLPLP 430
E K+L LP
Sbjct: 224 VE----------KNLYLP 231
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 26.2 bits (57), Expect = 9.7
Identities = 8/77 (10%), Positives = 28/77 (36%), Gaps = 11/77 (14%)
Query: 111 CEHVLEKLDFKHSSLLRDHHPLLEAVSGAL--------QSSNANHTLQRTFGPCLEILSG 162
C ++++ K+ ++++H + + + +TF +I+ G
Sbjct: 71 CLGNIDRIYDKNLLMIKEHILAIAIYESRILKRKYKNKDDKEVCKIINKTFADIRDIIGG 130
Query: 163 PLIKDLPLPVNRKRVEE 179
D ++ +++
Sbjct: 131 ---TDYWNDLSNRKLVG 144
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.386
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,944,685
Number of extensions: 95011
Number of successful extensions: 338
Number of sequences better than 10.0: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 27
Length of query: 536
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 446
Effective length of database: 1,171,896
Effective search space: 522665616
Effective search space used: 522665616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.0 bits)