Query psy8365
Match_columns 381
No_of_seqs 496 out of 1353
Neff 11.1
Searched_HMMs 29240
Date Fri Aug 16 16:48:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 3.1E-38 1.1E-42 289.7 25.8 340 31-379 23-384 (438)
2 1pw4_A Glycerol-3-phosphate tr 100.0 2.4E-36 8.1E-41 278.2 22.8 339 29-380 23-385 (451)
3 2gfp_A EMRD, multidrug resista 100.0 5.2E-34 1.8E-38 256.3 8.9 321 37-380 3-329 (375)
4 4gc0_A D-xylose-proton symport 100.0 4.7E-31 1.6E-35 245.6 27.2 343 29-380 7-409 (491)
5 4aps_A DI-OR tripeptide H+ sym 100.0 3.6E-30 1.2E-34 239.6 25.1 312 55-380 35-425 (491)
6 2xut_A Proton/peptide symporte 99.9 1.6E-25 5.5E-30 209.9 18.3 141 56-208 35-186 (524)
7 2cfq_A Lactose permease; trans 99.9 7.4E-27 2.5E-31 212.5 5.9 310 55-380 28-351 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.6 3.1E-14 1.1E-18 130.5 18.4 156 43-208 261-421 (451)
9 3o7q_A L-fucose-proton symport 99.4 3.7E-12 1.3E-16 116.2 14.6 124 60-190 286-409 (438)
10 2cfq_A Lactose permease; trans 99.4 1.6E-12 5.5E-17 117.9 11.5 118 68-189 258-376 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.3 2.8E-12 9.4E-17 118.9 6.3 133 54-187 303-447 (491)
12 4gc0_A D-xylose-proton symport 99.2 9E-10 3.1E-14 101.9 17.6 135 52-187 295-431 (491)
13 2gfp_A EMRD, multidrug resista 99.1 8E-11 2.7E-15 105.0 6.7 126 60-189 226-353 (375)
14 2xut_A Proton/peptide symporte 98.9 7.4E-09 2.5E-13 96.6 11.2 118 70-188 336-467 (524)
15 2g9p_A Antimicrobial peptide l 54.3 5.4 0.00019 18.3 1.0 14 88-102 2-15 (26)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=3.1e-38 Score=289.71 Aligned_cols=340 Identities=13% Similarity=0.096 Sum_probs=262.5
Q ss_pred hHHHHHHHHHHHHHhhhhhhcCchhhHHHHHhhhcCChHHHHHHHHHhhhhhhHHhhhhhhhhhhhcCchhhhHHHHHHH
Q psy8365 31 QRVLALLLMCLLGFGSYFCYDNPSSLEEHFTTDMHLTNAQYMNLYSWYSWPNVICCFIGGFLIDRVFGIRMGSTIYSVLV 110 (381)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~~G~r~~~~~~~~~~ 110 (381)
+++..+..++...+...++....++..|.+.+++|.++.+.|++.+.+.+++.++++++|+++|| +|||++++.+.++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLY 101 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHHH
Confidence 34555566666777778888888999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHHhccchhhhhhhhhhhhhcccCCcchHHHHHHHHHHhHhhHhhhhhhHHHH-hhh
Q psy8365 111 VIGQLVFALGAYVDSLFITILGRFIFGIGGESLAVAQNSYAVLWFKGKELNMVFGFQLSLSRVGSTVNMFVAEPLY-KYV 189 (381)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~ 189 (381)
+++.+++....++++++.+++.|+++|++.+...+...+++.|++|+|+|++++++.+...++|..+++.+++.+. +..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9998877433448999999999999999999999999999999999999999999999999999999999999988 433
Q ss_pred hcc-------------------ccccchhhHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhcccCcccccccccccc
Q psy8365 190 EKF-------------------GLIGYQTLGIVLLLAGMTCVLSLLCSLLLGCMDKRAERILNRRNAGETEVARLSDVKH 250 (381)
Q Consensus 190 ~~~-------------------~~~gWr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (381)
+.. ...+||+ .++..+++..+..++. +....++.+++.++++++++.+.+++++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~--~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 256 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQT--PYMIIVAIVLLVALLI---MLTKFPALQSDNHSDAKQGSFSASLSRLAR 256 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH---HHCCCCCCTTTCCCCSSTTSHHHHHHHHTT
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHH--HHHHHHHHHHHHHHHH---HHHcCCcccccccccccccchhhhHHHHHh
Confidence 210 0001888 5555544333332221 112222222211122222333345667777
Q ss_pred cCcchhhHHHHHHHhhhhhhcchhhHHHH-HHHhcCCChhhhhhhHHHHHHHHhhhhhhHHHHHHhhcchHHHHHHHHHH
Q psy8365 251 FPVSFWMVVVIIVSYYTSIFPFVSLAQEL-FVKRFNLDSDAANRLNSIVYTISAFLSPLMGLVVDKTGRNLFWVFISLMV 329 (381)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~ 329 (381)
+|+++...+..++..........+.|.| +++.+|.++.+++...+...++..++.++.|++.||++||+.+.......
T Consensus 257 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 257 -IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIA 335 (438)
T ss_dssp -CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 7899998888888888888888999999 88888999999999999999999999999999999999998865554444
Q ss_pred HHHHHHHHhh-ccchhHHHHHHHHHHHHhhhcchhhhhhhcccCCcccccc
Q psy8365 330 SIVCHFMVGH-TMIDPHITMVMMGIAYSMVASGLWPLIALVIPEYQLGTAY 379 (381)
Q Consensus 330 ~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~ 379 (381)
.++..+... ..........+.+++.+...+..+++..|.+|++ ++++.
T Consensus 336 -~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~ 384 (438)
T 3o7q_A 336 -MALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGS 384 (438)
T ss_dssp -HHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHH
T ss_pred -HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchh
Confidence 344444333 2223344456677777778888899989999876 66554
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2.4e-36 Score=278.22 Aligned_cols=339 Identities=13% Similarity=0.055 Sum_probs=263.0
Q ss_pred chhHHHHHHHHHHHHHhhhhhhcCchhhHHHHHhhhcCChHHHHHHHHHhhhhhhHHhhhhhhhhhhhcCchhhhHHHHH
Q psy8365 29 NIQRVLALLLMCLLGFGSYFCYDNPSSLEEHFTTDMHLTNAQYMNLYSWYSWPNVICCFIGGFLIDRVFGIRMGSTIYSV 108 (381)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~~G~r~~~~~~~~ 108 (381)
++.++..+...++..+...++.....+..|.+.+++ .++.+.|++.+++.++..++++++|+++|| +|||+++.++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~ 100 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHH
Confidence 455677778888888889999999999999999999 999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHhhhc-cchhHHHHHHHHHHhccchhhhhhhhhhhhhcccCCcchHHHHHHHHHHhHhhHhhhhhhHHHHh
Q psy8365 109 LVVIGQLVFALGAY-VDSLFITILGRFIFGIGGESLAVAQNSYAVLWFKGKELNMVFGFQLSLSRVGSTVNMFVAEPLYK 187 (381)
Q Consensus 109 ~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 187 (381)
+.+++.+++.+... +++++.++++|+++|++.+...+...+++.|++|+++|++++++.+....+|.+++|.+++.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998886654111 58999999999999999999999999999999999999999999999999999999999998876
Q ss_pred hhhcccccc-chhhHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhh-cc--c--------Ccccccc-----cccccc
Q psy8365 188 YVEKFGLIG-YQTLGIVLLLAGMTCVLSLLCSLLLGCMDKRAERILNR-RN--A--------GETEVAR-----LSDVKH 250 (381)
Q Consensus 188 ~~~~~~~~g-Wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~--------~~~~~~~-----~~~~~~ 250 (381)
.. | ||+ .+++.+++..+..++..... .++++++..++ ++ + +++++.+ .++.++
T Consensus 181 ~~------g~w~~--~f~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (451)
T 1pw4_A 181 WF------NDWHA--ALYMPAFCAILVALFAFAMM--RDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLP 250 (451)
T ss_dssp HT------CCSTT--CTHHHHHHHHHHHHHHHHHC--CCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSS
T ss_pred Hh------ccHHH--HHHHHHHHHHHHHHHHHhhc--cCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHc
Confidence 65 5 998 55555543333333322222 12111110000 00 0 0001111 244555
Q ss_pred cCcchhhHHHHHHHhhhhhhcchhhHHHHHHHhcCCChhhhhhhHHHHHHHHhhhhhhHHHHHHhh--cchHHHHHHHHH
Q psy8365 251 FPVSFWMVVVIIVSYYTSIFPFVSLAQELFVKRFNLDSDAANRLNSIVYTISAFLSPLMGLVVDKT--GRNLFWVFISLM 328 (381)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--g~r~~~~~~~~~ 328 (381)
+|.++...+..++..........+.|.|+++.+|.++.+.+...+...++.+++.++.|++.||+ +||+.+......
T Consensus 251 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 251 -NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMT 329 (451)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 68899888888888888888999999999888999999999999999999999999999999999 888876655555
Q ss_pred HHHHHHHHHhhcc--c--hhHHHHHHHHHHHHhhhcchhhhhhhcccCCccccccc
Q psy8365 329 VSIVCHFMVGHTM--I--DPHITMVMMGIAYSMVASGLWPLIALVIPEYQLGTAYG 380 (381)
Q Consensus 329 ~~~~~~~~~~~~~--~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g 380 (381)
...+++.++.... . .......+.|++.+...+...++..|.+|++.||+++|
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 385 (451)
T 1pw4_A 330 LVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 385 (451)
T ss_dssp HHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHH
Confidence 5545555544421 2 22334455566666667777899999999999998876
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=5.2e-34 Score=256.29 Aligned_cols=321 Identities=12% Similarity=0.071 Sum_probs=247.7
Q ss_pred HHHHHHHHhhhhhhcCchhhHHHHHhhhcCChHHHHHHHHHhhhhhhHHhhhhhhhhhhhcCchhhhHHHHHHHHHHHHH
Q psy8365 37 LLMCLLGFGSYFCYDNPSSLEEHFTTDMHLTNAQYMNLYSWYSWPNVICCFIGGFLIDRVFGIRMGSTIYSVLVVIGQLV 116 (381)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~~G~r~~~~~~~~~~~~~~~~ 116 (381)
.+++...+...++.....+..|.+.+++|.|+++.+++.+.+.++..+++++.|+++|| +|||+.+..+..+.+++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHH
Confidence 34555666777788888899999999999999999999999999999999999999999 99999999999999998887
Q ss_pred HHhhhccchhHHHHHHHHHHhccchhhhhhhhhhhhhcccCCcchHHHHHHHHHHhHhhHhhhhhhHHHHhhhhcccccc
Q psy8365 117 FALGAYVDSLFITILGRFIFGIGGESLAVAQNSYAVLWFKGKELNMVFGFQLSLSRVGSTVNMFVAEPLYKYVEKFGLIG 196 (381)
Q Consensus 117 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~g 196 (381)
... +++++.+++.|+++|++.+...+...+++.|++|+|+|++++++.+....+|..++|.+++.+.+.. |
T Consensus 82 ~~~---~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~ 152 (375)
T 2gfp_A 82 AVT---TSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW------N 152 (375)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH------H
T ss_pred HHH---hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc------c
Confidence 766 6899999999999999999999999999999999999999999999999999999999999887765 6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhcccCcccccccccccccCcchhhHHHHHHHhhhhhhcchhhH
Q psy8365 197 YQTLGIVLLLAGMTCVLSLLCSLLLGCMDKRAERILNRRNAGETEVARLSDVKHFPVSFWMVVVIIVSYYTSIFPFVSLA 276 (381)
Q Consensus 197 Wr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (381)
||+ .++..++... +..+......|++++. ++++++++.++++.++ +|+++...+..++..........+.
T Consensus 153 ~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (375)
T 2gfp_A 153 WRA--CYLFLLVLCA----GVTFSMARWMPETRPV---DAPRTRLLTSYKTLFG-NSGFNCYLLMLIGGLAGIAAFEACS 222 (375)
T ss_dssp HHH--HHHHHHHHHH----HHHCCCCCSSCCCSTT---TCCCCCTTTCSTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHH--HHHHHHHHHH----HHHHHHHHHCcccCCC---CcccccHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 998 4544433222 2222111222221111 1122233445566666 6888888888888888888888899
Q ss_pred HHHHHHhcCCChhhhhhhHHHHHHHHhhhhhhHHHHHHhhcchHHHHHHHHHHHHHHHH--HHhh----ccchhHHHHHH
Q psy8365 277 QELFVKRFNLDSDAANRLNSIVYTISAFLSPLMGLVVDKTGRNLFWVFISLMVSIVCHF--MVGH----TMIDPHITMVM 350 (381)
Q Consensus 277 ~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~ 350 (381)
|.|+++.+|.++.+.+.......++..++.++.+++.||.+++.. . ........+.. .... +.+.......+
T Consensus 223 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 300 (375)
T 2gfp_A 223 GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW-Q-SVICCLLAGLLMWIPDWFGVMNVWTLLVPAAL 300 (375)
T ss_dssp SCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHH-H-HHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHhhhccccHHHHHHHHHH
Confidence 999988889999999999999999999999999999999876222 1 11111111111 1111 11223345667
Q ss_pred HHHHHHhhhcchhhhhhhcccCCccccccc
Q psy8365 351 MGIAYSMVASGLWPLIALVIPEYQLGTAYG 380 (381)
Q Consensus 351 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g 380 (381)
.+++.+...+...++..|..| ++||++.|
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g 329 (375)
T 2gfp_A 301 FFFGAGMLFPLATSGAMEPFP-FLAGTAGA 329 (375)
T ss_dssp HHHHHHHTSSTTHHHHHTHHH-HHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhCC-cccchHHH
Confidence 788888888999999999998 78888765
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=4.7e-31 Score=245.57 Aligned_cols=343 Identities=18% Similarity=0.117 Sum_probs=229.3
Q ss_pred chhHHHHHHHHHHHHHhhhhhhcCchhhHHHHHhhhcC--------ChHHHHHHHHHhhhhhhHHhhhhhhhhhhhcCch
Q psy8365 29 NIQRVLALLLMCLLGFGSYFCYDNPSSLEEHFTTDMHL--------TNAQYMNLYSWYSWPNVICCFIGGFLIDRVFGIR 100 (381)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~~G~r 100 (381)
+++.+.+..+.++..+..++|...++...|.++++++. ++.+.|++.+.+.+|..++++++|+++|| +|||
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk 85 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRR 85 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCH
Confidence 34455555666677788889999999899999887742 34568999999999999999999999999 9999
Q ss_pred hhhHHHHHHHHHHHHHHHhhh---------------ccchhHHHHHHHHHHhccchhhhhhhhhhhhhcccCCcchHHHH
Q psy8365 101 MGSTIYSVLVVIGQLVFALGA---------------YVDSLFITILGRFIFGIGGESLAVAQNSYAVLWFKGKELNMVFG 165 (381)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 165 (381)
+++.++.+++.++++++++.. .++|+++++++|+++|++.|...+....+++|+.|+++|++..+
T Consensus 86 ~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~ 165 (491)
T 4gc0_A 86 DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVS 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHH
Confidence 999999999999999877421 37899999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhHhhhhhhHHHHhhhhcc--ccccchhhHHHHHHHHHHHHHHHHHHHhhcccchhhH------------HH
Q psy8365 166 FQLSLSRVGSTVNMFVAEPLYKYVEKF--GLIGYQTLGIVLLLAGMTCVLSLLCSLLLGCMDKRAE------------RI 231 (381)
Q Consensus 166 ~~~~~~~~g~~~g~~~~~~l~~~~~~~--~~~gWr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 231 (381)
+.+.+...|.++++.++..+....+.. ...+||+ .+....+..+ +..+...+.++.++ +.
T Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~peSp~~L~~~~~~~~a~~~ 239 (491)
T 4gc0_A 166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY---MFASECIPAL---LFLMLLYTVPESPRWLMSRGKQEQAEGI 239 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH---HHHTTHHHHH---HHHHHGGGSCCCHHHHHHTTCHHHHHHH
T ss_pred hhhhhhhhhhhhhhhcchhhccccccccccchhhHH---Hhhhhhhhhh---hhhhhhhcCCCChHHHHHcCchhHHHHh
Confidence 999999999999998887776544322 1124665 2222222222 22222222111110 00
Q ss_pred hhh--------cc-c-------CcccccccccccccCcchhhH-HHHHHHhhhhhhcchhhHHHHHHHhcCCChhhhhhh
Q psy8365 232 LNR--------RN-A-------GETEVARLSDVKHFPVSFWMV-VVIIVSYYTSIFPFVSLAQELFVKRFNLDSDAANRL 294 (381)
Q Consensus 232 ~~~--------~~-~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 294 (381)
.++ ++ . ++++........+ .++.... ....+......+....|.+.+ .+..+.+.......
T Consensus 240 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 317 (491)
T 4gc0_A 240 LRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFG-VGVIVIGVMLSIFQQFVGINVVLYYAPEV-FKTLGASTDIALLQ 317 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSC-CTHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHSSCCHHHHHHH
T ss_pred HHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhc-ccHHHHHHHHHHHHHHhhhhHHHhcchHH-HHhcCCCccchhhH
Confidence 000 00 0 0000001111112 2333333 333333444455555566554 45567777777777
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHh--hccc---hhHHHHHHHHHHHHh-hhcchhhhhhh
Q psy8365 295 NSIVYTISAFLSPLMGLVVDKTGRNLFWVFISLMVSIVCHFMVG--HTMI---DPHITMVMMGIAYSM-VASGLWPLIAL 368 (381)
Q Consensus 295 ~~~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~g~~~~~-~~~~~~~~~~~ 368 (381)
.....+...++.++.+++.||+|||+.++.......+..+.+.. .... .....+.++..+++. ..+..+.+.+|
T Consensus 318 ~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 397 (491)
T 4gc0_A 318 TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSE 397 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 77888889999999999999999999866554444433332221 1111 122223333333333 45777899999
Q ss_pred cccCCccccccc
Q psy8365 369 VIPEYQLGTAYG 380 (381)
Q Consensus 369 ~~p~~~~g~~~g 380 (381)
.+|++.|+++.|
T Consensus 398 ~fPt~~R~~~~g 409 (491)
T 4gc0_A 398 IFPNAIRGKALA 409 (491)
T ss_dssp SSCTTTHHHHHH
T ss_pred hCCHhHHHHHHH
Confidence 999999999876
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=3.6e-30 Score=239.61 Aligned_cols=312 Identities=13% Similarity=0.100 Sum_probs=221.5
Q ss_pred hhHHHHHhh-----hcCChHHHHHHHHHhhhhhhHHhhhhhhhhhhhc-CchhhhHHHHHHHHHHHHHHHhhhccchhHH
Q psy8365 55 SLEEHFTTD-----MHLTNAQYMNLYSWYSWPNVICCFIGGFLIDRVF-GIRMGSTIYSVLVVIGQLVFALGAYVDSLFI 128 (381)
Q Consensus 55 ~~~~~~~~~-----~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~~-G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (381)
...+++.++ +|.++.+.+++.+.+.++..++++++|+++|| + |||+++..+.++.+++.+++.. ++|++.
T Consensus 35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~g~r~~~~~~~~~~~~~~~~~~~---~~~~~~ 110 (491)
T 4aps_A 35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADR-IIGARPAVFWGGVLIMLGHIVLAL---PFGASA 110 (491)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHHS---CCSTTH
T ss_pred HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHH---hhhHHH
Confidence 333455555 99999999999999999999999999999999 7 9999999999999998887765 799999
Q ss_pred HHHHHHHHhccchhhhhhhhhhhhhcccCCc--chHHHHHHHHHHhHhhHhhhhhhHHHHhhhhccccccchhhHHHHHH
Q psy8365 129 TILGRFIFGIGGESLAVAQNSYAVLWFKGKE--LNMVFGFQLSLSRVGSTVNMFVAEPLYKYVEKFGLIGYQTLGIVLLL 206 (381)
Q Consensus 129 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~gWr~~~~~~~~ 206 (381)
++++|+++|++.+...+...++++|++|+++ |+.++++++...++|..++|.+++.+.+.. |||+ .++..
T Consensus 111 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------g~~~--~f~~~ 182 (491)
T 4aps_A 111 LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA------GYHV--AFSLA 182 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------CHHH--HHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh------hHHH--HHHHH
Confidence 9999999999999999999999999999988 777888899999999999999999998765 7998 55544
Q ss_pred HHHHHHHHHHHHHhhcccchhhHHHhhhcccCc-----------------------------------------------
Q psy8365 207 AGMTCVLSLLCSLLLGCMDKRAERILNRRNAGE----------------------------------------------- 239 (381)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 239 (381)
++ ..+++++..........+++...++++.++
T Consensus 183 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (491)
T 4aps_A 183 AI-GMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIP 261 (491)
T ss_dssp HH-HHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHH
Confidence 33 333333332222111000000000000000
Q ss_pred ---------ccccccccccccCcchhhHHHHHHHhhhhhhcchhhHHHHHHHhcCCChhhhhhhHHHHHHHHhhhhhhHH
Q psy8365 240 ---------TEVARLSDVKHFPVSFWMVVVIIVSYYTSIFPFVSLAQELFVKRFNLDSDAANRLNSIVYTISAFLSPLMG 310 (381)
Q Consensus 240 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g 310 (381)
++..+.++..+ ....+...+..+...........+.+.|.++..+.+....+.......+...++.++.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (491)
T 4aps_A 262 VFYFAWMISSVKVTSTEHLR-VVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFA 340 (491)
T ss_dssp HHHHHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHH-HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHH
Confidence 00000011111 22344455555555666667777888899888888878888989999999999999999
Q ss_pred HHHHhhcchHHHH----HHHHHHHHHHHHHHhh-----------ccchhHHHHHHHHHHHHhhhcchhhhhhhcccCCcc
Q psy8365 311 LVVDKTGRNLFWV----FISLMVSIVCHFMVGH-----------TMIDPHITMVMMGIAYSMVASGLWPLIALVIPEYQL 375 (381)
Q Consensus 311 ~l~dr~g~r~~~~----~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~ 375 (381)
++.||++||+... ..+..+..+++.+... +.+......++.+++.+...+..+++..|.+|++.|
T Consensus 341 ~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~ 420 (491)
T 4aps_A 341 WLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFN 420 (491)
T ss_dssp HHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCS
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHH
Confidence 9999999875422 2333333333333322 122334456667777777788889999999999999
Q ss_pred ccccc
Q psy8365 376 GTAYG 380 (381)
Q Consensus 376 g~~~g 380 (381)
|++.|
T Consensus 421 g~~~g 425 (491)
T 4aps_A 421 SQMMS 425 (491)
T ss_dssp SSSTH
T ss_pred HHHHH
Confidence 99876
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.93 E-value=1.6e-25 Score=209.92 Aligned_cols=141 Identities=17% Similarity=0.198 Sum_probs=124.7
Q ss_pred hHHHHHhhhc------CChHHHHHHHHHhhhhhhHHhhhhhhhhhhhc-CchhhhHHHHHHHHHHHHHHHhhhccc-hhH
Q psy8365 56 LEEHFTTDMH------LTNAQYMNLYSWYSWPNVICCFIGGFLIDRVF-GIRMGSTIYSVLVVIGQLVFALGAYVD-SLF 127 (381)
Q Consensus 56 ~~~~~~~~~~------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~~-G~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 127 (381)
..+.+.+++| .++.+.+++.+.+.++..++++++|+++|| + |||+++.++.++.+++.+++.. ++ +++
T Consensus 35 l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~~~~~~~~~~~~~~~~~---~~~~~~ 110 (524)
T 2xut_A 35 LTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTILWLSLIYCVGHAFLAI---FEHSVQ 110 (524)
T ss_dssp HHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHHHHHHHHHHHHHHHHHH---TSSCHH
T ss_pred HHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHH---hcccHH
Confidence 3346778899 999999999999999999999999999999 9 9999999999999888887765 67 999
Q ss_pred HHHHHHHHHhccchhhhhhhhhhhhhcccCCcchHHHHH---HHHHHhHhhHhhhhhhHHHHhhhhccccccchhhHHHH
Q psy8365 128 ITILGRFIFGIGGESLAVAQNSYAVLWFKGKELNMVFGF---QLSLSRVGSTVNMFVAEPLYKYVEKFGLIGYQTLGIVL 204 (381)
Q Consensus 128 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~~~~~l~~~~~~~~~~gWr~~~~~~ 204 (381)
.+++.|++.|++.+...+...+++.|++|+++|+++.+. .+...++|..++|.+++.+.+.. |||+ .++
T Consensus 111 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~~~--~f~ 182 (524)
T 2xut_A 111 GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------GAAV--AFG 182 (524)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------CHHH--HHH
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cHHH--HHH
Confidence 999999999999999999999999999999999877666 89999999999999999887754 7998 555
Q ss_pred HHHH
Q psy8365 205 LLAG 208 (381)
Q Consensus 205 ~~~~ 208 (381)
+.++
T Consensus 183 ~~~~ 186 (524)
T 2xut_A 183 IPGV 186 (524)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.93 E-value=7.4e-27 Score=212.49 Aligned_cols=310 Identities=12% Similarity=0.110 Sum_probs=191.6
Q ss_pred hhHHH-HHhhhcCChHHHHHHHHHhhhhhhHHhhhhhhhhhhhcCchhhhHHHHHHHHHHHHHHHhhhccchh-HHHHHH
Q psy8365 55 SLEEH-FTTDMHLTNAQYMNLYSWYSWPNVICCFIGGFLIDRVFGIRMGSTIYSVLVVIGQLVFALGAYVDSL-FITILG 132 (381)
Q Consensus 55 ~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 132 (381)
+..|. +++++|.|+.+.|++.+.+.+++.++++++|+++|| +|||+++.++..+.+++........+.+.. ..+...
T Consensus 28 ~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (417)
T 2cfq_A 28 PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106 (417)
T ss_dssp TTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 667799999999999999999999999999999999 999999998877665432211111112211 123456
Q ss_pred HHHHhccchhhhhhhhhhhhhcccC--CcchHHHHHHHHHHhHhhHhhhhhhHHHHhhhhccccccchhhHHHHHHHHHH
Q psy8365 133 RFIFGIGGESLAVAQNSYAVLWFKG--KELNMVFGFQLSLSRVGSTVNMFVAEPLYKYVEKFGLIGYQTLGIVLLLAGMT 210 (381)
Q Consensus 133 r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~gWr~~~~~~~~~~~~ 210 (381)
+.+.|++.+...+.......++.++ ++|+...+.......+|..++|.+++.+.+. +||+ .+++.++ .
T Consensus 107 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-------~~~~--~f~~~~~-~ 176 (417)
T 2cfq_A 107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-------NNQF--VFWLGSG-C 176 (417)
T ss_dssp HHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-------CSHH--HHTTTTT-T
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-------chhH--HHHHHHH-H
Confidence 6777777666666555555565543 3567777888888899999999999888752 5887 4443322 2
Q ss_pred HHHHHHHHHhhcccchhhHHHhhhcc--cCcccc---cccccccccCcchhhHHHHHHHhhhhhhcchhhHHHHHHHhcC
Q psy8365 211 CVLSLLCSLLLGCMDKRAERILNRRN--AGETEV---ARLSDVKHFPVSFWMVVVIIVSYYTSIFPFVSLAQELFVKRFN 285 (381)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 285 (381)
.++. .......++++++..++++ ++++++ .++++.++ +|+++...+..+.....+..+..+.|.|+.+.++
T Consensus 177 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (417)
T 2cfq_A 177 ALIL---AVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFR-QPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFA 252 (417)
T ss_dssp TTTH---HHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHH---HHHHHHcCcccccccccccccccccccccHHHHHHHhc-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2111 1122222222111000000 001111 12234555 6777776665555555555555678888876554
Q ss_pred C---ChhhhhhhHHHHHHHHhhhhhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHhhhc
Q psy8365 286 L---DSDAANRLNSIVYTISAFLSPLMGLVVDKTGRNLFWVFISLMVSIVCHFMVGHTMI--DPHITMVMMGIAYSMVAS 360 (381)
Q Consensus 286 ~---~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~ 360 (381)
. +....+...+...++.+++.++.+++.||++||+.+..... ...+.......... ...+...+.+++.+...+
T Consensus 253 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (417)
T 2cfq_A 253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGT-IMSVRIIGSSFATSALEVVILKTLHMFEVPFLLV 331 (417)
T ss_dssp SHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHH
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHH-HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 2 23345666777777888899999999999999987554433 33344444333222 222233344555555556
Q ss_pred chhhhhhhcccCCccccccc
Q psy8365 361 GLWPLIALVIPEYQLGTAYG 380 (381)
Q Consensus 361 ~~~~~~~~~~p~~~~g~~~g 380 (381)
..+.+..|.+|++.||+++|
T Consensus 332 ~~~~~~~~~~p~~~~g~~~g 351 (417)
T 2cfq_A 332 GCFKYITSQFEVRFSATIYL 351 (417)
T ss_dssp HHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHH
Confidence 66889999999999998754
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.60 E-value=3.1e-14 Score=130.50 Aligned_cols=156 Identities=13% Similarity=0.195 Sum_probs=122.6
Q ss_pred HHhhhhhhcCchhhHHHHHhh-hcCChHHHHHHHHHhhhhhhHHhhhhhhhhhhhc--CchhhhHHHHHHHH-HHHHHHH
Q psy8365 43 GFGSYFCYDNPSSLEEHFTTD-MHLTNAQYMNLYSWYSWPNVICCFIGGFLIDRVF--GIRMGSTIYSVLVV-IGQLVFA 118 (381)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~~--G~r~~~~~~~~~~~-~~~~~~~ 118 (381)
.+.............|.+.++ +|.++.+.+++.+...++..++.++.|++.|| + |||+.+..+..+.. ++.+++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (451)
T 1pw4_A 261 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYW 339 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHH
Confidence 333333333444555655555 89999999999999999999999999999999 9 99999888777665 4444333
Q ss_pred hhhccchhHHHHHHHHHHhccchhhhhhhhhhhhhcccCCcchHHHHHHHHHHhH-hhHhhhhhhHHHHhhhhccccccc
Q psy8365 119 LGAYVDSLFITILGRFIFGIGGESLAVAQNSYAVLWFKGKELNMVFGFQLSLSRV-GSTVNMFVAEPLYKYVEKFGLIGY 197 (381)
Q Consensus 119 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~~~~~~~gW 197 (381)
.. ...+.+.+.+..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.+.. ||
T Consensus 340 ~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~------g~ 412 (451)
T 1pw4_A 340 MN-PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------GW 412 (451)
T ss_dssp SC-CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------CS
T ss_pred Hh-cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------Cc
Confidence 21 1137778888888999998888888899999999999999999999999999 9999999999998865 56
Q ss_pred hhhHHHHHHHH
Q psy8365 198 QTLGIVLLLAG 208 (381)
Q Consensus 198 r~~~~~~~~~~ 208 (381)
+. .++..++
T Consensus 413 ~~--~~~~~~~ 421 (451)
T 1pw4_A 413 DG--GFMVMIG 421 (451)
T ss_dssp HH--HHHHHHH
T ss_pred HH--HHHHHHH
Confidence 76 4444443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.40 E-value=3.7e-12 Score=116.17 Aligned_cols=124 Identities=14% Similarity=0.007 Sum_probs=104.7
Q ss_pred HHhhhcCChHHHHHHHHHhhhhhhHHhhhhhhhhhhhcCchhhhHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhcc
Q psy8365 60 FTTDMHLTNAQYMNLYSWYSWPNVICCFIGGFLIDRVFGIRMGSTIYSVLVVIGQLVFALGAYVDSLFITILGRFIFGIG 139 (381)
Q Consensus 60 ~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 139 (381)
+++.+|.++.+.++..+...++..++.++.|++.|| +|||+.+..+.++.+++.++... .++.+.++. -++.|++
T Consensus 286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~g~~ 360 (438)
T 3o7q_A 286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAF---AGGHVGLIA-LTLCSAF 360 (438)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHH---CCHHHHHHH-HHHHHHH
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHH---cCCcHHHHH-HHHHHHH
Confidence 445569999999999999999999999999999999 99999999998888777765554 566655444 4788899
Q ss_pred chhhhhhhhhhhhhcccCCcchHHHHHHHHHHhHhhHhhhhhhHHHHhhhh
Q psy8365 140 GESLAVAQNSYAVLWFKGKELNMVFGFQLSLSRVGSTVNMFVAEPLYKYVE 190 (381)
Q Consensus 140 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 190 (381)
.+...+...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 361 MSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 8989999999999999865 888888877 566999999999999998874
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.39 E-value=1.6e-12 Score=117.89 Aligned_cols=118 Identities=10% Similarity=0.094 Sum_probs=98.8
Q ss_pred hHHHHHHHHHhhhhhhHHhhhhhhhhhhhcCchhhhHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHhccchhhhhhh
Q psy8365 68 NAQYMNLYSWYSWPNVICCFIGGFLIDRVFGIRMGSTIYSVLVVIGQLVFALGAYVDSLFITILGRFIFGIGGESLAVAQ 147 (381)
Q Consensus 68 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 147 (381)
..+.++..+...++..++.++.|+++|| +|||+.+..+.++.+++.+.... .++.+.+++..++.+++.+...+..
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~ 333 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSF---ATSALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTT---CCSHHHHHHHTTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888888888889999999999999 99999998888777766554433 5677788888888888877777777
Q ss_pred hhhhhhcccCCcchHHHHH-HHHHHhHhhHhhhhhhHHHHhhh
Q psy8365 148 NSYAVLWFKGKELNMVFGF-QLSLSRVGSTVNMFVAEPLYKYV 189 (381)
Q Consensus 148 ~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~ 189 (381)
..+++|.+|++.|+.+.++ ++....+|..++|.+++.+.+..
T Consensus 334 ~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~ 376 (417)
T 2cfq_A 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376 (417)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc
Confidence 8899999999999999998 48888899999999999988765
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.28 E-value=2.8e-12 Score=118.91 Aligned_cols=133 Identities=11% Similarity=-0.042 Sum_probs=101.4
Q ss_pred hhhHHH-HHhhhcCChHHHHHHHHHhhhhhhHHhhhhhhhhhhhcCchhhhH-----HHHHHHHHHHHHHHhhh------
Q psy8365 54 SSLEEH-FTTDMHLTNAQYMNLYSWYSWPNVICCFIGGFLIDRVFGIRMGST-----IYSVLVVIGQLVFALGA------ 121 (381)
Q Consensus 54 ~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~~G~r~~~~-----~~~~~~~~~~~~~~~~~------ 121 (381)
....|. ..+.++.+..+.++..+...++..++.++.|++.|| +|||+... .+.++.+++.++.....
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (491)
T 4aps_A 303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTS 381 (491)
T ss_dssp GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCC
T ss_pred cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 333444 444466666677888888888899999999999999 99987655 55555555544333210
Q ss_pred ccchhHHHHHHHHHHhccchhhhhhhhhhhhhcccCCcchHHHHHHHHHHhHhhHhhhhhhHHHHh
Q psy8365 122 YVDSLFITILGRFIFGIGGESLAVAQNSYAVLWFKGKELNMVFGFQLSLSRVGSTVNMFVAEPLYK 187 (381)
Q Consensus 122 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 187 (381)
...+.+.+.+.-++.|++.+...+....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+
T Consensus 382 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 382 GKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp TTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred CCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 013677788888999999888899999999999999999999999999999999999998877754
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.18 E-value=9e-10 Score=101.93 Aligned_cols=135 Identities=9% Similarity=-0.003 Sum_probs=97.1
Q ss_pred CchhhHHHHHhhhcCChHHHHHHHHHhhhhhhHHhhhhhhhhhhhcCchhhhHHHHHHHHHHHHHHHhhhcc--chhHHH
Q psy8365 52 NPSSLEEHFTTDMHLTNAQYMNLYSWYSWPNVICCFIGGFLIDRVFGIRMGSTIYSVLVVIGQLVFALGAYV--DSLFIT 129 (381)
Q Consensus 52 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~~G~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l 129 (381)
......|.+.++.+.+..+.........+...++.++.+++.|| +|||+.++.+.....++.+........ ++...+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 373 (491)
T 4gc0_A 295 VVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL 373 (491)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHHHHHHHHHHhcccchHHHH
Confidence 33444567788888888888888888888899999999999999 999999998888877766654432111 222222
Q ss_pred HHHHHHHhccchhhhhhhhhhhhhcccCCcchHHHHHHHHHHhHhhHhhhhhhHHHHh
Q psy8365 130 ILGRFIFGIGGESLAVAQNSYAVLWFKGKELNMVFGFQLSLSRVGSTVNMFVAEPLYK 187 (381)
Q Consensus 130 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 187 (381)
...-+..+.......+....+.+|.+|.+.|+.+.|+......+|..+++.+.+.+.+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~ 431 (491)
T 4gc0_A 374 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDK 431 (491)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222221123345667899999999999999999999999999998877766544
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.11 E-value=8e-11 Score=105.04 Aligned_cols=126 Identities=16% Similarity=0.063 Sum_probs=98.1
Q ss_pred HHhhhcCChHHHHHHHHHhhhhhhHHhhhhhhhhhhhcCchhhhHHHHHH-HHHHHHHHHhhh-ccchhHHHHHHHHHHh
Q psy8365 60 FTTDMHLTNAQYMNLYSWYSWPNVICCFIGGFLIDRVFGIRMGSTIYSVL-VVIGQLVFALGA-YVDSLFITILGRFIFG 137 (381)
Q Consensus 60 ~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~~G~r~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~l~~~r~l~G 137 (381)
+++++|.++.+.+++.+...++..++.++.+++.|| +|+|. ..+... ...+........ ..++.+.+.+..++.|
T Consensus 226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 302 (375)
T 2gfp_A 226 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFF 302 (375)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHH
Confidence 345589999999999999999999999999999999 88732 222222 222211111100 0246777788889999
Q ss_pred ccchhhhhhhhhhhhhcccCCcchHHHHHHHHHHhHhhHhhhhhhHHHHhhh
Q psy8365 138 IGGESLAVAQNSYAVLWFKGKELNMVFGFQLSLSRVGSTVNMFVAEPLYKYV 189 (381)
Q Consensus 138 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 189 (381)
++.+...+....++.|..| ++|+++.++.+....+|..+++.+.+.+.+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 353 (375)
T 2gfp_A 303 FGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG 353 (375)
T ss_dssp HHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred HHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999998 89999999999999999999999999987654
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.89 E-value=7.4e-09 Score=96.63 Aligned_cols=118 Identities=11% Similarity=0.076 Sum_probs=86.6
Q ss_pred HHHHHHHHhhhhhhHHhhhhhhhh----hhhcCch----hhhHHHHHHHHHHHHHHHhhh------ccchhHHHHHHHHH
Q psy8365 70 QYMNLYSWYSWPNVICCFIGGFLI----DRVFGIR----MGSTIYSVLVVIGQLVFALGA------YVDSLFITILGRFI 135 (381)
Q Consensus 70 ~~g~~~s~~~~~~~~~~~~~g~l~----dr~~G~r----~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~r~l 135 (381)
..+++.+...++..+..++.+++. || .|+| +.+..+.++.+++.++..... ...+.+.+.+..++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 414 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIER-MGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYAL 414 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Confidence 456666666777777777777765 55 5443 455566666666554333210 02467778888999
Q ss_pred HhccchhhhhhhhhhhhhcccCCcchHHHHHHHHHHhHhhHhhhhhhHHHHhh
Q psy8365 136 FGIGGESLAVAQNSYAVLWFKGKELNMVFGFQLSLSRVGSTVNMFVAEPLYKY 188 (381)
Q Consensus 136 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 188 (381)
.|++.+...+....++.|..|+++|++++|+.+....+|..+++.+.+.+.+.
T Consensus 415 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 415 LTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp HHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999888763
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=54.27 E-value=5.4 Score=18.29 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=11.1
Q ss_pred hhhhhhhhhcCchhh
Q psy8365 88 IGGFLIDRVFGIRMG 102 (381)
Q Consensus 88 ~~g~l~dr~~G~r~~ 102 (381)
++|.+..+ ||||.+
T Consensus 2 lfgklikk-fgrkai 15 (26)
T 2g9p_A 2 LFGKLIKK-FGRKAI 15 (26)
T ss_dssp HHHHHHHH-HTSHHH
T ss_pred cHHHHHHH-HhHHHH
Confidence 46889999 999864
Done!