RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8365
(381 letters)
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 79.7 bits (197), Expect = 1e-16
Identities = 61/348 (17%), Positives = 121/348 (34%), Gaps = 45/348 (12%)
Query: 36 LLLMCLLGFGSYFCYDNPSSLEEHFTTDMHLTNAQYMNLYSWYSWPNVICCFIGGFLIDR 95
LLL+ L F S S D+ L+ +Q + S +S + + G+L DR
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 96 VFGIRMGSTIYSVLVVIGQLVFALGAYVDSLFITILGRFIFGIGGESLAVAQNSYAVLWF 155
R+ + +++ L L A+ SL++ ++GRF+ G+GG +L A + WF
Sbjct: 61 FGRRRV----LLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWF 116
Query: 156 KGKELNMVFGFQLSLSRVGSTVNMFVAEPLYKYVEKFGLIGYQTLGIVLLLAGMTCVLSL 215
KE G + +G+ + + L + L+ + +L
Sbjct: 117 PPKERGRALGLFSAGFGLGALLGPLLG---------GLLAESLGWRWLFLILAILGLLLA 167
Query: 216 LCSLLLGCMDKRAERILNRRNAGETEVARLSDVKHFPVSFWMVVVIIVSYYTSIFPFVSL 275
L L ++ + + ++
Sbjct: 168 LLLLF------------------------------LLRLLLLLALAFFLLSFGYYGLLTY 197
Query: 276 AQELFVKRFNLDSDAANRLNSIVYTISAFLSPLMGLVVDKTGRNLFWVFISLMVSIVCHF 335
+ L + A L S+ + L GL+ D+ GR + I L+++ +
Sbjct: 198 LPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLL 257
Query: 336 MVGHT--MIDPHITMVMMGIAYSMVASGLWPLIALVIPEYQLGTAYGM 381
++ + + ++++G L L + + P GTA G+
Sbjct: 258 LLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGL 305
Score = 36.9 bits (86), Expect = 0.013
Identities = 37/184 (20%), Positives = 66/184 (35%), Gaps = 8/184 (4%)
Query: 32 RVLALLLMCLLGFGSYFCYDNPSSLEEHFTTDMHLTNAQYMNLYSWYSWPNVICCFIGGF 91
+L L L L Y+ + L + + L+ A+ L S + ++ +GG
Sbjct: 176 LLLLLALAFFLLSFGYYGL--LTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 92 LIDRVFGIRMGSTIYSVLVVIGQLVFALGAYVDSLFITILGRFIFGIGGESLAVAQNSYA 151
L DR+ R+ I +L +G L+ AL + L + + + G G A + A
Sbjct: 234 LSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVAL---LLLGFGLGFAFPALLTLA 290
Query: 152 VLWFKGKELNMVFGFQLSLSRVGSTVNMFVAEPLYKYVEKFGLIGYQTLGIVLLLAGMTC 211
+ G + +G + +A L + G G + L L
Sbjct: 291 SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL---DTGGYGGVFLILAALALLAALL 347
Query: 212 VLSL 215
+L L
Sbjct: 348 LLLL 351
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 77.5 bits (191), Expect = 9e-16
Identities = 62/347 (17%), Positives = 137/347 (39%), Gaps = 20/347 (5%)
Query: 39 MCLLGFGSYFCYDNPSS-LEEHFTTDMHLTNAQYMNLYSWYSWPNVICCFIGGFLIDRVF 97
+ L F + L + D+ ++ + L + +S + + G L DR F
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDR-F 59
Query: 98 GIRMGSTIYSVLVVIGQLVFALGAYVDSLFITILGRFIFGIGGESLAVAQNSYAVLWFKG 157
G R + + +++ L L + SL++ ++ R + G+GG +L A + WF
Sbjct: 60 GRR---RVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPP 116
Query: 158 KELNMVFGFQLSLSRVGSTVNMFVAEPLYKYVEKFGLIGYQTLGIVLLLAGMTCVLSLLC 217
+E G + +G+ + + L G++ L+LA + + ++L
Sbjct: 117 EERGRALGLLSAGFGLGAALGPLLGGLLASL------FGWR--AAFLILAILALLAAVLA 168
Query: 218 SLLLGCMDKRAERILNRRNAGETEVARLSDVKHFPVSFWMVVVIIVSYYTSIFPFVSLAQ 277
+LLL ++R A V + PV + ++ +++ +
Sbjct: 169 ALLLPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYL--- 225
Query: 278 ELFVKRFNLDSDAANRLNSIVYTISAFLSPLMGLVVDKTGRNLFWVFISLMVSIVC---- 333
L+ + L + A L + + A L+G + D+ GR + L++ +
Sbjct: 226 PLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLA 285
Query: 334 HFMVGHTMIDPHITMVMMGIAYSMVASGLWPLIALVIPEYQLGTAYG 380
+ + + + ++++G +V L L++ + P+ + GTA G
Sbjct: 286 LLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASG 332
Score = 35.1 bits (81), Expect = 0.050
Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 4/147 (2%)
Query: 31 QRVLALLLMCLLGFGSYFCYDNPSSLEEHFTTDMHLTNAQYMNLYSWYSWPNVICCFIGG 90
VL LLL LL ++F L + + L+ L I + G
Sbjct: 202 DPVLWLLLALLLFGFAFFALLTYLPL---YQEVLGLSALLAGLLLGLAGLLGAIGRLLLG 258
Query: 91 FLIDRVFGIRMGSTIYSVLVVIGQLVFALGAYVDSLFITILGRFIFGIGGESLAVAQNSY 150
L DR+ R +L++ L AL + +S ++ + G G + A N+
Sbjct: 259 RLSDRLGRRRRLLLALLLLILAA-LGLALLSLTESSLWLLVALLLLGFGAGLVFPALNAL 317
Query: 151 AVLWFKGKELNMVFGFQLSLSRVGSTV 177
+E G + +G +
Sbjct: 318 VSDLAPKEERGTASGLYNTAGSLGGAL 344
Score = 33.9 bits (78), Expect = 0.12
Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 1/125 (0%)
Query: 258 VVVIIVSYYTSIFPFVSLAQELFVKRFNLDSDAANRLNSIVYTISAFLSPLMGLVVDKTG 317
+ + + + L + A PL G + D+ G
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 318 RNLFWVFISLMVSIVCHFMVGHTMIDPHITM-VMMGIAYSMVASGLWPLIALVIPEYQLG 376
R + L+ ++ ++ + + + + V+ G+ + LIA P + G
Sbjct: 61 RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERG 120
Query: 377 TAYGM 381
A G+
Sbjct: 121 RALGL 125
>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
[Transport and binding proteins, Anions].
Length = 366
Score = 40.4 bits (95), Expect = 0.001
Identities = 62/309 (20%), Positives = 111/309 (35%), Gaps = 14/309 (4%)
Query: 63 DMHLTNAQYMNLYSWYSWPNVICCFIGGFLIDRVFGIRMGSTIYSVLVVIGQLVFALGAY 122
D+ L+ AQ NL + + I GFL+D+ FG R +T+ +L+ I L L
Sbjct: 31 DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAIPCLWAGLA-- 87
Query: 123 VDSLFITILGRFIFGIGGESLAVAQNSYAVLWFKGKELNMVFGFQLSLSRVGSTVNMFVA 182
V S + +L R GI G S A + +F K G +G V FV
Sbjct: 88 VQSYSVLLLLRLFIGIAGGSFASCMPWISF-FFPKKIQGTALGLAAGWGNMGGGVAQFVM 146
Query: 183 EPLYKYVEKFGLIGYQTLGIVLLLAGMTCVLSLLCSLLLGC-----MDKRAERILNRRNA 237
P+ + + + +L L L+ K A L+ + A
Sbjct: 147 PPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGA 206
Query: 238 ----GETEVARLSDVKHFPVSFWMVVVIIVSYYTSIFPFVSLAQELFVKRFNLDSDAANR 293
G + V ++ + ++ V++ + + S+ F +F L A
Sbjct: 207 RWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFL-GVSSIFAMFFKDQFGLSKVTAGA 265
Query: 294 LNSIVYTISAFLSPLMGLVVDKTGRNLFWVFISLMVSIVCHFMVGHTMIDPHITMVMMGI 353
S+ + + PL G + D+ G + L V++ +V + + + ++
Sbjct: 266 YASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLF 325
Query: 354 AYSMVASGL 362
SG
Sbjct: 326 VALFFFSGA 334
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 40.3 bits (95), Expect = 0.001
Identities = 50/283 (17%), Positives = 104/283 (36%), Gaps = 30/283 (10%)
Query: 87 FIGGFLIDRVFGIRMGSTIYSVLVVIGQLVFALGAYVDSLFITILGRFIFGIGGESLAVA 146
GFL DR FG R + + +L++I L A S + ++ + G+ G S AV
Sbjct: 67 LPYGFLTDR-FGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVG 125
Query: 147 QNSYAVLWFKGKELNMVFGFQLSLSRVGSTVNMFVAEPLYKYVEKFGLIGYQTLGIVLLL 206
A +F ++ + G +G V VA + FG + ++ + + ++
Sbjct: 126 M-PNASFFFPKEKQGLALGIA-GAGNLGVAVAQLVAPLV---AVAFGFLAWRNVAGIYVV 180
Query: 207 AGMTCVLSLLCSLLLGCMDKRAERILNRRNAGETEVARLSDVKHFPVSFWMVVVIIVSY- 265
A ++ + + L M+ E + + A+L V ++ + ++ ++
Sbjct: 181 A---LAIAAVLAWLG--MNDVPEHRASVK---PQLPAQLKAVFSNKDTWLLSLLYFATFG 232
Query: 266 ----YTSIFPFVSLAQELFVKRFNLDSDAANRLNSIVYTISAFLSPLMGLVVDKTG--RN 319
+++ P V +F L A + + I A PL G + D+ G R
Sbjct: 233 GFVGFSAYLP------MYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV 286
Query: 320 LFWVFISLMVSIVCHFMVGHTMIDPHITMVMMGIAYSMVASGL 362
VF + + ++ + + +A +
Sbjct: 287 TLAVF---VGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFV 326
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 39.2 bits (92), Expect = 0.002
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Query: 62 TDMHLTNAQYMNLYSWYSWPNVICCFIGGFLIDRVFGIRMGSTIYSVLVVIGQLVFALGA 121
D+ L+ AQY ++S +SW V+ F GG+L+DR FG R +V +VI + L A
Sbjct: 22 EDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGAR---KTLAVFIVIWGVFTGLQA 77
Query: 122 YVDSLFITILGRFIFGIGGESLAVAQNSYAVLWFKGKELNMVFGFQLSLSRVGS 175
+ + + R + G WF E S +G
Sbjct: 78 FAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGG 131
>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport
and metabolism].
Length = 498
Score = 36.1 bits (84), Expect = 0.028
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 56 LEEHFTTDMHLTNAQYMNLYSWYSWPNVICCFIGGFLIDRVFGIRMGSTIYSVLVVIGQL 115
L + L+S Y + IGG+L DRV G R + ++L+ IG L
Sbjct: 48 LYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHL 107
Query: 116 VFALGAYVDSLFITILGRFIFGIG 139
V A+ + V +G + +G
Sbjct: 108 VLAISS-VSGPGGLYIGLALIIVG 130
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 35.7 bits (83), Expect = 0.034
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 19/140 (13%)
Query: 86 CFIGGFLIDRVFGIRMGSTIYSVLVVIGQLVFALGAYVDSLFITILGRFI--FGIGGESL 143
G L DR FG + I +VL VIG L+ A S ++ I+GR I G+GG S+
Sbjct: 63 SLFAGKLGDR-FGRKKSLLIGNVLFVIGALLQGF-AKGKSFYMLIVGRVIVGLGVGGISV 120
Query: 144 AVA--QNSYAVLWFKGKELNMVFGFQLSLSRVGSTVNMFVAEPLYKYVEKFGLIGYQTLG 201
V + A +G + +QL + T + VA + GL Y
Sbjct: 121 LVPMYISEIAPKKLRGA---LGSLYQLGI-----TFGILVA-----AIIGLGLNKYSNSD 167
Query: 202 IVLLLAGMTCVLSLLCSLLL 221
+ G+ V ++L + L
Sbjct: 168 GWRIPLGLQFVPAILLLIGL 187
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 34.7 bits (80), Expect = 0.062
Identities = 51/248 (20%), Positives = 85/248 (34%), Gaps = 23/248 (9%)
Query: 87 FIGGFLIDRVFGIRMGSTIYSVLVVIGQLVFALGAYVDSLFITILGRFIFGIGGESLAVA 146
+GG L D+ FG R + + +L +G F A DSL L + G
Sbjct: 56 PVGGLLADK-FGPRAVAMLGGILYGLG---FTFYAIADSLAALYLTYGLASAGVGIAYGI 111
Query: 147 QNSYAVLWFKGKELNMVFGFQLSLSRVGSTVNMFVAEPLYKYVEKFGLIGYQTLGIVLLL 206
+ AV WF K G + G + F+ PL V L G I
Sbjct: 112 ALNTAVKWFPDKR-----GLASGIIIGGYGLGSFILSPLITSVIN--LEGVPAAFIY--- 161
Query: 207 AGMTCVLSLLCSLLLGCMDKRAERILNRRNAGETEVARLSDVKHFPVSFWMVVVIIVSYY 266
M + L+ L + +++ + + ++ P FW V+ +S++
Sbjct: 162 --MGIIFLLVIVLGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTP-QFW---VLYLSFF 215
Query: 267 TSIFPFVSLAQEL--FVKRFNLDSDAANRLNSIVYTISAFLSPLMGLVVDKTGRNLFWVF 324
+ + L + + L SI + P +G + DK GR +
Sbjct: 216 LNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGR-QKTMS 274
Query: 325 ISLMVSIV 332
I +S V
Sbjct: 275 IVFGISAV 282
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 34.5 bits (80), Expect = 0.076
Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 26/134 (19%)
Query: 253 VSFWMVVVIIVSYYTSIFPFVSLAQELFVKRFNLDSDAANRLNSIVYTISAFLSPLMGLV 312
+F +VV+ ++ +YT +F L + A + + I A P+MG +
Sbjct: 26 FAFGIVVLYLLFFYTDVF--------------GLSAALAGTIFLVARIIDAITDPIMGFI 71
Query: 313 VDKT----GRNLFWV-FISLMVSIVC-------HFMVGHTMIDPHITMVMMGIAYSMVAS 360
VD+T GR W+ + ++ +IV F + +I +T +++G+ Y++V
Sbjct: 72 VDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNI 131
Query: 361 GLWPLIALVIPEYQ 374
L + + Q
Sbjct: 132 PYGALGPEITQDPQ 145
>gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter.
The Glycoside-Pentoside-Hexuronide (GPH):Cation
Symporter Family (TC 2.A.2) GPH:cation symporters
catalyze uptake of sugars in symport with a monovalent
cation (H+ or Na+). Members of this family includes
transporters for melibiose, lactose, raffinose,
glucuronides, pentosides and isoprimeverose. Mutants of
two groups of these symporters (the melibiose permeases
of enteric bacteria, and the lactose permease of
Streptococcus thermophilus) have been isolated in which
altered cation specificity is observed or in which sugar
transport is uncoupled from cation symport (i.e.,
uniport is catalyzed). The various members of the family
can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+
as the symported cation. All of these proteins possess
twelve putative transmembrane a-helical spanners
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 437
Score = 33.8 bits (78), Expect = 0.13
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 303 AFLSPLMGLVVDKTGRNL-----FWVFISLMVSIVC-------HFMVGHTMIDPHITMVM 350
A P+MG +VD+T + + ++ SIV F ++ +IT ++
Sbjct: 49 AITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYIL 108
Query: 351 MGIAYSMVASGLWPLI 366
+G+ YS V W L+
Sbjct: 109 LGLFYSFVNIPYWSLV 124
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 33.1 bits (76), Expect = 0.26
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 48 FCYDNP--SSLEEHFTTDMHLTNAQYMNLYSWYSWPNVICCFIGGFLIDRVFGIR---MG 102
F Y P + L + TD+ N+ + + + C +GGFL D G R +
Sbjct: 288 FLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVC 346
Query: 103 STIYSVLVVIGQLVFAL-GAYVDSLFITILGRFIFGIG 139
S + S L++I VFA+ GA V L + + + + G G
Sbjct: 347 SLLISQLLIIP--VFAIGGANVWVLGLLLFFQQMLGQG 382
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 32.7 bits (75), Expect = 0.32
Identities = 33/137 (24%), Positives = 48/137 (35%), Gaps = 5/137 (3%)
Query: 34 LALLLMCLLGFGSYFCYDNPSSLEEHFTTDMHLTNAQYMNLYSWYSWPNVICCFIGGFLI 93
LA +L+ L F F L H LT + + + I G LI
Sbjct: 13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLI 72
Query: 94 DRVFGIRMGSTIYSVLVVIGQLVFALGAYVDSLFITILGRFIFGIGGESLAVAQNSYAVL 153
+ G + G + +L +G +F A S ++ FI G L A N Y L
Sbjct: 73 KK-LGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTL 131
Query: 154 WFKGKE----LNMVFGF 166
K + LN+ F
Sbjct: 132 LGKPESAAFRLNLAQAF 148
>gnl|CDD|236889 PRK11273, glpT, sn-glycerol-3-phosphate transporter; Provisional.
Length = 452
Score = 32.0 bits (73), Expect = 0.56
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 41/183 (22%)
Query: 53 PSSLEE--HFTTDMHLTNAQYMNLYSWYSWPNVICCFIGGFLIDRVFGIRMGST--IYSV 108
P+ L+E HF D ++ Y LY + P + C G++ D+VF G+T +
Sbjct: 277 PTYLKEVKHFALDK--SSWAYF-LYEYAGIPGTLLC---GWMSDKVFRGNRGATGVFFMT 330
Query: 109 LVVIGQLVFALG----AYVDSLFITILGRFIFG----IGGESLAVAQNSYA--VLWFKGK 158
LV I +V+ L VD + ++G I+G IG +L +A A F G
Sbjct: 331 LVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTG- 389
Query: 159 ELNMVFGFQLSLSRVGSTVNMFVAEPLYKY-VEKFGLIGYQTLGIVLLLAGMTCVLSLLC 217
+FG+ +G +V A + Y V+ FG G G ++++ G +L+++
Sbjct: 390 ----LFGY------LGGSV---AASAIVGYTVDFFGWDG----GFMVMIGG--SILAVIL 430
Query: 218 SLL 220
++
Sbjct: 431 LIV 433
>gnl|CDD|130697 TIGR01636, phage_rinA, phage transcriptional activator, RinA
family. This model represents a family of phage
proteins, including RinA, a transcriptional activator in
staphylococcal phage phi 11. This family shows
similarity to ArpU, a phage-related putative autolysin
regulator, and to some sporulation-specific sigma
factors [Mobile and extrachromosomal element functions,
Prophage functions, Regulatory functions, DNA
interactions].
Length = 134
Score = 30.3 bits (68), Expect = 0.80
Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 15/81 (18%)
Query: 224 MDKRAERILNRRNAGETEVARLSDVKHFPVSFWMVVVIIVSYY--TSIFPFVSLAQELFV 281
MD+R + R+A E + + VII Y V LAQ+LF+
Sbjct: 62 MDRRLWNLERNRDAIENCLNEADEQTR---------VIIQELYMKKRPLTLVGLAQQLFI 112
Query: 282 KRFNLDSDAANRLNSIVYTIS 302
S A N I+ ++
Sbjct: 113 S----KSTAYRLRNHIIEAVA 129
>gnl|CDD|219154 pfam06738, DUF1212, Protein of unknown function (DUF1212). This
family represents a conserved region within a number of
hypothetical membrane proteins of unknown function found
in eukaryotes, bacteria and archaea.
Length = 193
Score = 29.8 bits (68), Expect = 1.7
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 79 SWPNVICCFIGGFLIDRVFGIRMGSTIYSVLVVIGQLVFALGAYVDSLFITILGRFIFGI 138
W + + F+ G L + I + + AL A+V SL + GI
Sbjct: 124 DWIDFLIAFLAGLLGGLLRQILAKRGLNPF------VFEALAAFVASLIALLAVSLGLGI 177
>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional.
Length = 493
Score = 30.3 bits (68), Expect = 1.9
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 59 HFTTDMHLTNAQYMNLYSWYSWPNVICCFIGGFLIDRVFGIRMGSTIYSVLVVIGQLVFA 118
+ T + + L+S Y + +GGFL D+V G RM + ++L+ IG +V
Sbjct: 35 YLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVV-- 92
Query: 119 LGA 121
LGA
Sbjct: 93 LGA 95
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 29.9 bits (68), Expect = 2.6
Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 65 HLTNAQYMNLYSWYSWPNVICCFIGGFLIDRVFGIRMGST--IYSVLVVIGQLVFALGA- 121
+ + S + + + G+L D++F R G I+ +L+ +++ L
Sbjct: 284 GFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPN 343
Query: 122 ---YVDSLFITILGRFIFG 137
+D++ + I+G I+G
Sbjct: 344 GSYLLDAILLFIIGFLIYG 362
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 29.7 bits (67), Expect = 3.0
Identities = 52/262 (19%), Positives = 99/262 (37%), Gaps = 26/262 (9%)
Query: 110 VVIGQLVFALG----AYVDSLFITILGRFIFGIGGESLAVAQNSYAVLWFKGKELNMVFG 165
+++G +FAL A +++ ++ RF+ G + +V + + G+EL+ ++
Sbjct: 73 LLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYS 132
Query: 166 FQLSLSRVGSTVNMFVAEPLYKYVEKFGLIGYQTLGIVLLLAGMTCVLSLLCSLLLGCMD 225
+ + + VA L Y+ + + + + L LAG+ +LS L +L
Sbjct: 133 ILMPV----LALAPAVAPLLGGYILVW--LSWHAIFAFLSLAGI--LLSALIFFILPETL 184
Query: 226 KRAERILNRRNAGETEVARLSDVKHFPVSFWMVVVIIVSYYTSIFPFVSLAQELFVKRFN 285
RI L +K FW +I + + F F S A +++
Sbjct: 185 PYEARIQISTYFETF----LLLLKS--KMFWGYALIYGASFGGFFAFFSGAPFVYIDIMG 238
Query: 286 LDSDAANRLNSIVYTISAFLSPLMGLVVDKTG-----RNLFWVFISLMVSIVCHFMVGHT 340
+ L ++ F L G + K G R +F V + ++G
Sbjct: 239 VSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLG 298
Query: 341 MIDPHITMVM--MGIAYSMVAS 360
I M +GI SM++S
Sbjct: 299 SW-AMIIGPMMFVGIGNSMISS 319
>gnl|CDD|234841 PRK00805, PRK00805, putative deoxyhypusine synthase; Provisional.
Length = 329
Score = 29.2 bits (66), Expect = 4.0
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 341 MI-DPHITMVMMGIAYSMVASGLWPLIALVIPE 372
M+ DP T + MG++ +MV +G+ +I +I
Sbjct: 41 MLKDPDNT-IFMGLSGAMVPAGMRKIIKWLIRN 72
>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter
(Peptide:H+ symporter), bacterial. The model describes
proton-dependent oligopeptide transporters in bacteria.
This model is restricted in its range in recognizing
bacterial proton-dependent oligopeptide transporters,
although they are found in yeast, plants and animals.
They function by proton symport in a 1:1 stoichiometry,
which is variable in different species. All of them are
predicted to contain 12 transmembrane domains, for which
limited experimental evidence exists [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 475
Score = 28.6 bits (64), Expect = 5.9
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 88 IGGFLIDRVFGIRMGSTIYSVLVVIGQLVFALGAYVDSLFITILGRFIFGIGG 140
+G + DRV+G + + +++++G + A+ Y D +F LG G G
Sbjct: 67 VGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYG-LGTIAVGSGL 118
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 28.1 bits (63), Expect = 8.1
Identities = 40/181 (22%), Positives = 65/181 (35%), Gaps = 18/181 (9%)
Query: 83 VICCFIGGFLID---RVFGIRMGSTIYSVLVVIGQLVFALGAYVDSLFITILGRFIFGIG 139
++ FIG FG + I ++L VIG ++ L A+ S+ + I+GR + GIG
Sbjct: 81 LVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIG 140
Query: 140 GESLAVAQNSY----AVLWFKGK-----ELNMVFGFQLSLSRVGSTVNMFVAEPLYKYVE 190
+ Y A +G +L + FG L GS ++
Sbjct: 141 VGIASALVPMYLSEIAPKALRGALTSLYQLAITFG-ILVAYGFGSGKVSLNNTLGWRI-- 197
Query: 191 KFGLIGYQTLGIVLLLAGMTCVLSLLCSLLLGCMDKRAERILNRRNAGETEVARLSDVKH 250
+G Q + LL G+ + L+ + A + L R E L D
Sbjct: 198 ---PLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELE 254
Query: 251 F 251
Sbjct: 255 L 255
>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability.
Length = 312
Score = 28.1 bits (63), Expect = 9.1
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 343 DPHITMVMMGIAYSMVASGLWPLIALVIPEY---QLGTAY 379
DP I + M A ++A G L +L+ E+ +LG A+
Sbjct: 257 DPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAF 296
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.142 0.442
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,846,606
Number of extensions: 1998250
Number of successful extensions: 3131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3075
Number of HSP's successfully gapped: 182
Length of query: 381
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 282
Effective length of database: 6,546,556
Effective search space: 1846128792
Effective search space used: 1846128792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (26.8 bits)