RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8365
(381 letters)
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 53.5 bits (129), Expect = 6e-08
Identities = 49/371 (13%), Positives = 102/371 (27%), Gaps = 31/371 (8%)
Query: 32 RVLALLLMCLLGFGSYFCYDNPSSLEEHFTTDMHLTNAQYMNLYSWYSWPNVICCFIGGF 91
R L + Y N + L + + + S S FI G
Sbjct: 26 RWQIFLGIFFGYAAYYLVRKNFA-LAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 84
Query: 92 LIDRVFGIRMGSTIYSVLVVIGQLVFALGAYVDSLFITILG-RFIFGIGGESLAVAQNSY 150
+ DR R+ +L L + S + F+ G + +
Sbjct: 85 VSDR-SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW-FQGMGWPPCGR 142
Query: 151 AV-LWFKGKELNMVFGFQLSLSRVGSTVNMFVAEPLYKYVEKFGLIGYQTLGIVLLLAGM 209
+ W+ KE + VG + + + + + +
Sbjct: 143 TMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW-----FNDWHAALYMPAFCAI 197
Query: 210 TCVLSLLCSLLL-------GCMDKRAERILNRRNAGETEVARLSDVKHFPV------SFW 256
+++L ++ G + + E L+ + F W
Sbjct: 198 --LVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLW 255
Query: 257 MVVVIIVSYYTSIFPFVSLAQELFVKRFNLDSDAANRLNSIVYTISAFLSPLMGLVVDK- 315
+ + V Y + + + + + D ++ + + L G + DK
Sbjct: 256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 315
Query: 316 --TGRNLFWVFISLMVSIVCHFMVGHTMIDPHITMVMMGIAYS---MVASGLWPLIALVI 370
R VF +V+I + +P + M+ M + + +
Sbjct: 316 FRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA 375
Query: 371 PEYQLGTAYGM 381
P+ GTA G
Sbjct: 376 PKKAAGTAAGF 386
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 46.5 bits (110), Expect = 8e-06
Identities = 44/353 (12%), Positives = 102/353 (28%), Gaps = 20/353 (5%)
Query: 29 NIQRVLALLLMCLLGFGSYFCYDNPSSLEEHFTTDMHLTNAQYMNLYSWYSWPNVICCFI 88
+ ++ L+C L F + L F LTN Q + S + + I
Sbjct: 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIP 80
Query: 89 GGFLIDRVFGIRMGSTIYSVLVVIGQLVFALGAYVDSLFITILGRFIFGIGGESLAVAQN 148
G L+ + + G L +G +F A + + + ++G FI G L A N
Sbjct: 81 AGILMKK-LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAAN 139
Query: 149 SYAVLWFKGKELNMVFGFQLSLSRVGSTVNMFVAEPLY---------------KYVEKFG 193
+ + + + + G+ + + + L +
Sbjct: 140 PFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSA 199
Query: 194 LIGYQTLGIVLLLAGMTCVLSLLCSLLLGCMDKRAERILNRRNAGETEVARLSDVKHFPV 253
L + + ++ L+ L++ + + + A LS +
Sbjct: 200 YKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRH 259
Query: 254 SFWMVVVIIVSYYTSIFPFVSLAQELFVKRFNLDSDAANRLNSIVYTISAFLSPLMGLVV 313
W V+ + L + + + + A + + F+ G +
Sbjct: 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTG-TMVCFFIGRFTGTWL 318
Query: 314 DKTGRNLFWVFISLMVSIVCHFMVGHTMIDPHITMVMMGIAYSMVASGLWPLI 366
+ ++++ + ++ S S +P I
Sbjct: 319 ISRFAPHKVLAAYALIAMALCLIS---AFAGGHVGLIALTLCSAFMSIQYPTI 368
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide
transport, major facilitator SUPE transporter, MFS;
3.30A {Streptococcus thermophilus}
Length = 491
Score = 38.9 bits (91), Expect = 0.002
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 64 MHLTNAQYMNLYSWYSWPNVICCFIGGFLIDRVFGIRMGSTIYSVLVVIGQLVFALGAYV 123
+H+T A ++ + Y+ + IGGF+ DR+ G R VL+++G +V AL
Sbjct: 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGA 108
Query: 124 DSLFITILGRFIFGIG 139
+LF + + I G G
Sbjct: 109 SALFGS-IILIIIGTG 123
>2xut_A Proton/peptide symporter family protein; transport protein,
membrane protein, major facilitator super transporter;
3.62A {Shewanella oneidensis}
Length = 524
Score = 35.0 bits (81), Expect = 0.036
Identities = 17/82 (20%), Positives = 30/82 (36%)
Query: 59 HFTTDMHLTNAQYMNLYSWYSWPNVICCFIGGFLIDRVFGIRMGSTIYSVLVVIGQLVFA 118
+ L A +++ + +GG++ DR FG S++ +G A
Sbjct: 44 LLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLA 103
Query: 119 LGAYVDSLFITILGRFIFGIGG 140
+ + F T L G GG
Sbjct: 104 IFEHSVQGFYTGLFLIALGSGG 125
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 31.1 bits (71), Expect = 0.56
Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 9/111 (8%)
Query: 32 RVLALLLMCLLGFGSYFCYDNPSSLEEHFTTDMHLTNAQYMNLYSWYSWPNVICCFIGGF 91
LLM + G ++ S + + L++ S + F G +
Sbjct: 200 GFNCYLLMLIGGLAGIAAFEACSGVL--MGAVLGLSSMT----VSILFILPIPAAFFGAW 253
Query: 92 LIDRV---FGIRMGSTIYSVLVVIGQLVFALGAYVDSLFITILGRFIFGIG 139
R F M ++ L+ + V +++ ++ +F G
Sbjct: 254 FAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFG 304
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.79
Identities = 19/127 (14%), Positives = 43/127 (33%), Gaps = 42/127 (33%)
Query: 264 SYYTSIFPFVSLAQE--------------LFVKRFNLDS--DAANRLNSIVYTISAFLS- 306
+Y+ + + + E +F + N+ + + Y +S +S
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 307 PLMGLVVDKTGRNLFWVFISLMVSIVCHFMV-GHTM-IDP-HITMVMMGIAYSMVASGLW 363
PL+G++ L H++V + P + + G + + GL
Sbjct: 239 PLIGVI-------------QL-----AHYVVTAKLLGFTPGELRSYLKGA--TGHSQGL- 277
Query: 364 PLIALVI 370
+ A+ I
Sbjct: 278 -VTAVAI 283
Score = 30.4 bits (68), Expect = 1.3
Identities = 22/125 (17%), Positives = 35/125 (28%), Gaps = 26/125 (20%)
Query: 224 MDKRAERILNRRNAGETEVARLSDVKHFPVSFWMVVVIIVSYYTSIFPFVSLAQELFVKR 283
MD + R L + G E V T+ F S QE F K
Sbjct: 1 MDAYSTRPLTLSH-GSLEHV-------LLVP------------TASFFIASQLQEQFNKI 40
Query: 284 FNLDSD---AANRLNSIVYTISAFLSPLMGLVVDKTGRNLFWVFISLMVSIVCHFMVG-- 338
++ A + + + FL + LV V + ++ G
Sbjct: 41 LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND 100
Query: 339 -HTMI 342
H +
Sbjct: 101 IHALA 105
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
superfamily, structural genomi structural
genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus
horikoshii} SCOP: c.108.1.10
Length = 231
Score = 28.2 bits (64), Expect = 4.1
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 181 VAEPLYKYVEKFGLI 195
AE +Y +EKFG +
Sbjct: 217 GAEAIYHILEKFGYL 231
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 28.4 bits (64), Expect = 4.6
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 100 RMGSTIYSVLVVIGQLVFALGAYVDSLFITILGRFIFGIGGESLAVA 146
I + ++ G F + + F+ +F + ++ VA
Sbjct: 300 HFVDIIAGLAILFGATFFIVAMCIGYTFLRA---MVFFM---AIVVA 340
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 28.4 bits (64), Expect = 5.1
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 6/47 (12%)
Query: 100 RMGSTIYSVLVVIGQLVFALGAYVDSLFITILGRFIFGIGGESLAVA 146
I V V +G F L + + L IF I + VA
Sbjct: 295 HFIHIITGVAVFLGVSFFILSLILG---YSWLEAVIFLI---GIIVA 335
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.142 0.442
Gapped
Lambda K H
0.267 0.0841 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,930,991
Number of extensions: 361713
Number of successful extensions: 898
Number of sequences better than 10.0: 1
Number of HSP's gapped: 887
Number of HSP's successfully gapped: 27
Length of query: 381
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 286
Effective length of database: 4,049,298
Effective search space: 1158099228
Effective search space used: 1158099228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (25.9 bits)