RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8365
         (381 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 60.1 bits (144), Expect = 1e-10
 Identities = 46/362 (12%), Positives = 96/362 (26%), Gaps = 13/362 (3%)

Query: 32  RVLALLLMCLLGFGSYFCYDNPSSLEEHFTTDMHLTNAQYMNLYSWYSWPNVICCFIGGF 91
           R    L +       Y    N +     +  +   +        S  S       FI G 
Sbjct: 23  RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 81

Query: 92  LIDRVFGIRMGSTIYSVLVVIGQLVFALGAYVDSLFITILGRFIFGIGGESLAVAQNSYA 151
           + DR            +   +   +  +     S+ +  +  F+ G              
Sbjct: 82  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 141

Query: 152 VLWFKGKELNMVFGFQLSLSRVGSTVNMFVAEPLYKYVEKFGLIGYQTLGIVLLLAGMTC 211
           V W+  KE   +         VG  +   +      +   +    Y      +L+A    
Sbjct: 142 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 201

Query: 212 VLSLLCSLLLGCMDKRAERILNRRNAGETEVARLSDVKHF------PVSFWMVVVIIVSY 265
            +        G       +     +  E     L+  + F          W + +  V  
Sbjct: 202 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV 261

Query: 266 YTSIFPFVSLAQELFVKRFNLDSDAANRLNSIVYTISAFLSPLMGLVVDKTGRNLFWVFI 325
           Y   +  +  +     +  +   D ++    +        + L G + DK  R       
Sbjct: 262 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 321

Query: 326 SLMVSIVCHFMVGHTMIDPH------ITMVMMGIAYSMVASGLWPLIALVIPEYQLGTAY 379
              +++V    + + M          I M+++G         +      + P+   GTA 
Sbjct: 322 VFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA 381

Query: 380 GM 381
           G 
Sbjct: 382 GF 383


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 40/354 (11%), Positives = 94/354 (26%), Gaps = 10/354 (2%)

Query: 29  NIQRVLALLLMCLLGFGSYFCYDNPSSLEEHFTTDMHLTNAQYMNLYSWYSWPNVICCFI 88
           N               G+YF +              H++ +    +++  S  +++   +
Sbjct: 8   NFWMFGLFFFFYFFIMGAYFPF-----FPIWLHDINHISKSDTGIIFAAISLFSLLFQPL 62

Query: 89  GGFLIDRVFGIRMGSTIYSVLVVIGQLVFALGAYVDSLFITILGRFIFGIGGESLAVAQN 148
            G L D+  G+R         +++    F +  +   L   IL   I G           
Sbjct: 63  FGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAG 121

Query: 149 SYAVLWFKGKELNMVFGFQLSLSRVGSTVNMFVAEPLYKYVEKFGLIGYQTLGIVLLLAG 208
           + AV  F  K               G       A  +           +       L+  
Sbjct: 122 APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILA 181

Query: 209 MTCVLSLLCSLLLGCMDKRAERILNRRNAGETEVARLSDVKHFPVSFWMVVVIIVSYYTS 268
           +    +   +         A  +    +A   ++A     +       + V+ +   Y  
Sbjct: 182 VLLFFAKTDAP---SSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDV 238

Query: 269 IFPFVSLAQELFVKRFNLDSDAANRLNSIVYTISAFLSPLMGLVVDKTGRNLFWVFISLM 328
                +     F       +     + ++   ++A +     L++++ G     +    +
Sbjct: 239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTI 298

Query: 329 VSIVCHFMVGHTMIDPH-ITMVMMGIAYSMVASGLWPLIALVIPEYQLGTAYGM 381
           +S+        T      I   +       +  G +  I          T Y +
Sbjct: 299 MSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLV 352


>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme)
           {Plasmodium vivax [TaxId: 5855]}
          Length = 373

 Score = 28.8 bits (63), Expect = 1.3
 Identities = 15/137 (10%), Positives = 32/137 (23%), Gaps = 13/137 (9%)

Query: 44  FGSYFCYDNPSSLEEHFT---TDMHLTNAQYMNLYSWYSWPNVICCFIGGFLIDRVFGIR 100
           F  Y    +  +            +  N  Y  L     W   +    G   +++   I 
Sbjct: 200 FTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLDVHFGKQTMEKANVIV 259

Query: 101 MGST--IYSVLVVIGQLVFALGA--------YVDSLFITILGRFIFGIGGESLAVAQNSY 150
              T  I +    + +    L          YV +     +    F     +  +    Y
Sbjct: 260 DSGTTTITAPSEFLNKFFANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYY 319

Query: 151 AVLWFKGKELNMVFGFQ 167
                +  +   +    
Sbjct: 320 MNPILEVDDTLCMITML 336


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.142    0.442 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,425,363
Number of extensions: 65673
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 7
Length of query: 381
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 294
Effective length of database: 1,213,086
Effective search space: 356647284
Effective search space used: 356647284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.1 bits)