Query psy8366
Match_columns 513
No_of_seqs 480 out of 1512
Neff 11.2
Searched_HMMs 29240
Date Fri Aug 16 16:49:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.1E-46 3.9E-51 374.3 36.1 439 32-498 9-484 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 3.4E-39 1.1E-43 317.0 15.3 388 34-474 27-431 (451)
3 3o7q_A L-fucose-proton symport 100.0 1.6E-36 5.6E-41 296.7 31.8 359 39-471 30-427 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 5.1E-32 1.7E-36 268.7 28.2 391 75-481 47-476 (491)
5 2gfp_A EMRD, multidrug resista 100.0 3.8E-33 1.3E-37 266.9 9.9 347 41-462 6-362 (375)
6 2cfq_A Lactose permease; trans 100.0 2.7E-30 9.3E-35 250.1 8.8 354 75-481 36-404 (417)
7 2xut_A Proton/peptide symporte 100.0 1.5E-27 5.2E-32 238.5 22.1 408 75-483 41-509 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.5 4E-14 1.4E-18 138.3 8.7 179 299-480 30-210 (451)
9 2gfp_A EMRD, multidrug resista 99.4 9.6E-13 3.3E-17 125.1 14.2 163 313-481 16-179 (375)
10 3o7q_A L-fucose-proton symport 99.4 6.5E-13 2.2E-17 129.2 12.7 157 313-472 42-225 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.4 6E-12 2E-16 124.3 14.5 156 313-474 29-194 (491)
12 2xut_A Proton/peptide symporte 99.3 1.9E-11 6.5E-16 121.8 16.4 155 314-473 29-195 (524)
13 2cfq_A Lactose permease; trans 99.3 8.4E-12 2.9E-16 120.3 10.2 143 79-221 256-404 (417)
14 4gc0_A D-xylose-proton symport 99.3 3.3E-11 1.1E-15 119.0 12.8 145 75-220 305-466 (491)
15 2g9p_A Antimicrobial peptide l 62.5 3.9 0.00013 19.5 1.3 14 101-114 2-15 (26)
16 3arc_T Photosystem II reaction 25.8 83 0.0028 16.8 3.3 11 212-222 18-28 (32)
17 3iyz_A Aquaporin-4; water tran 22.4 2E+02 0.0069 25.8 6.6 18 195-212 245-262 (340)
18 4dve_A Biotin transporter BIOY 22.2 1.7E+02 0.0057 23.9 5.6 25 88-112 99-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.1e-46 Score=374.30 Aligned_cols=439 Identities=21% Similarity=0.338 Sum_probs=337.8
Q ss_pred HHHHHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcch
Q psy8366 32 SQFTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGR 111 (513)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Gr 111 (513)
..+...++++++.+..|++.+..+..+|.+........+ .+.+.+..+.|++.+++.+|..+|++++|+++||+||
T Consensus 9 y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GR 84 (491)
T 4gc0_A 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQN----LSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGR 84 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGC----CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445556666778888999999999999988743211111 2234556788999999999999999999999999999
Q ss_pred hhHHHHHhHHHHHHHHHHH------------------hchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhh
Q psy8366 112 KRLMILVGFPFFLGWILLY------------------LAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLS 173 (513)
Q Consensus 112 r~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~ 173 (513)
|++++++.+++.+++++++ +++|+++++++|+++|+|.|+..+....+++|+.|+++|++..
T Consensus 85 k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~ 164 (491)
T 4gc0_A 85 RDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV 164 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence 9999999999999999998 4789999999999999999999999999999999999999999
Q ss_pred hHhhHHHHHHHHHHHHHhhhH------------hHHHHHHhhhHHHHHHHHHHHhccCchhhhhhcCChHHHHHHHHHhh
Q psy8366 174 LFAGAACNFGVFIIFLIYALT------------DWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVR 241 (513)
Q Consensus 174 ~~~~~~~~lG~~~~~~l~~~~------------~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~ 241 (513)
++.+.+..+|.++++.++... .||+.+.+..++.++..+..+++||||+|+..+++.+++.+.+++..
T Consensus 165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~ 244 (491)
T 4gc0_A 165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIM 244 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhc
Confidence 999999999999888776432 79999999999988888888999999999999999999988877654
Q ss_pred CCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHH
Q psy8366 242 GWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLV 321 (513)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (513)
+.+...+...+..+... +++ + ... ....++ .++.........+....+.+.+..|.+
T Consensus 245 ~~~~~~~~~~~~~~~~~---------------~~~-~---~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (491)
T 4gc0_A 245 GNTLATQAVQEIKHSLD---------------HGR-K---TGG-RLLMFG---VGVIVIGVMLSIFQQFVGINVVLYYAP 301 (491)
T ss_dssp HHHHHHHHHHHHHHHHH---------------HHH-H---HTT-HHHHSC---CTHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHH---------------hhh-h---hhh-HHHHhc---ccHHHHHHHHHHHHHHhhhhHHHhcch
Confidence 32211111111110000 000 0 000 111111 234455555566666777788888888
Q ss_pred HHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHH
Q psy8366 322 EIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCF 400 (513)
Q Consensus 322 ~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (513)
.+.+..+.+... .....+.++..+++.++++++.||+|||+.+..+.....++.+.+...... ....+..+....+..
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~ 380 (491)
T 4gc0_A 302 EVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-QAPGIVALLSMLFYV 380 (491)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHH
Confidence 888887776665 566677889999999999999999999999998888888877766654422 223344444445555
Q ss_pred HHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhc------cchhHHHHHHHHHHHHHHhhee
Q psy8366 401 WVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSW------FGLHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~------~g~~~~~~~~~~~~~~~~~~~~ 474 (513)
.++..+..++.+.+.+|++|++.|+++.|+.+.++++++++++.+.+.+.+. .+....+++++++++++.++.+
T Consensus 381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 460 (491)
T 4gc0_A 381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460 (491)
T ss_dssp HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5556677788889999999999999999999999999999999888776543 3455678889999999988888
Q ss_pred EEcccCCCCCHHHHHHHHhccccc
Q psy8366 475 FYVPETEDRTLQEILDFFAENKSA 498 (513)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~ 498 (513)
++.||+|+|++||+|+.+++++++
T Consensus 461 ~~~PETkg~tLeei~~~f~~~~~~ 484 (491)
T 4gc0_A 461 KFVPETKGKTLEELEALWEPETKK 484 (491)
T ss_dssp HHCCCCTTCCHHHHGGGTC-----
T ss_pred heecCCCCCCHHHHHHHhCCCCcc
Confidence 899999999999998877655443
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=3.4e-39 Score=317.02 Aligned_cols=388 Identities=13% Similarity=0.133 Sum_probs=285.5
Q ss_pred HHHHHHHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhh
Q psy8366 34 FTASVAQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKR 113 (513)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~ 113 (513)
+......++..+..+++.....+.+|.+. +++ .+..+.|++.+++.++..++++++|+++||+|||+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~ 93 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLV------------EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV 93 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT------------SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH
Confidence 33444445566667777888889999999 888 99999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHh----chhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHH
Q psy8366 114 LMILVGFPFFLGWILLYL----AETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFL 189 (513)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~ 189 (513)
+++++.++.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.++++.
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 173 (451)
T 1pw4_A 94 FLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPL 173 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999998888
Q ss_pred HhhhH----h-HHHHHHhhhHHHHHHHH-HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccc
Q psy8366 190 IYALT----D-WRTTVLISAIFPILTMI-MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSA 263 (513)
Q Consensus 190 l~~~~----~-wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (513)
++..+ + ||+.|++.+++.++..+ ..+++||+|+....+.+.+.. ++ . ..+.
T Consensus 174 ~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~-~~~~---------- 230 (451)
T 1pw4_A 174 LFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK-----------ND-Y-PDDY---------- 230 (451)
T ss_dssp HHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC-----------CC-----------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc-----------cc-c-cccc----------
Confidence 87653 7 99999999988877666 456788887642211111000 00 0 0000
Q ss_pred cccccccccchhhcchhhhhh-hhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh-cCCCchh-HHHHHHH
Q psy8366 264 TLYVADSEYTTDQRKSSQLSK-LLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT-FGLPMKS-EWVLVLT 340 (513)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~ 340 (513)
.+.++++.+ ..+ ..+..++++..+ ...+..+...........+.|.++++ .|++... +....+.
T Consensus 231 ------~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 297 (451)
T 1pw4_A 231 ------NEKAEQELT---AKQIFMQYVLPNKLLW----YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 297 (451)
T ss_dssp --------------C---CTHHHHHHTSSCHHHH----HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHH
T ss_pred ------hhhhhcccc---cccchHHHHHcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 000000000 011 022333332222 22222222333345566788888876 7888776 7888889
Q ss_pred HHHHHHhhhHHHHhhccc--CCchHHHHhhHHHH-HHHHHHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhcc
Q psy8366 341 GILSITGSFVSTITVNKL--GKRGMTLWSTGINT-FFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSE 417 (513)
Q Consensus 341 ~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (513)
.++.+++.++.+++.||+ ++|+.+..+..+.. ++.+++... ...+.+.......+.+.+. .+..+....+..|
T Consensus 298 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~ 373 (451)
T 1pw4_A 298 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN---PAGNPTVDMICMIVIGFLI-YGPVMLIGLHALE 373 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC---CTTCHHHHHHHHHHHHHHH-THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh---cccCHHHHHHHHHHHHHHH-hchHHHHHHHHHH
Confidence 999999999999999999 99988877666555 443333221 1112333333333333322 3445566689999
Q ss_pred ccchhhhhHHHHHHHHHHHH-HHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhhee
Q psy8366 418 VFPLQVRGIASGITAASSSV-VNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIY 474 (513)
Q Consensus 418 ~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 474 (513)
.+|++.|+++.|+.+...++ |..++|.+.|.+.+..|+...+++.+++.+++.++.+
T Consensus 374 ~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 374 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 9999999999999999999999888888877766544
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.6e-36 Score=296.68 Aligned_cols=359 Identities=15% Similarity=0.137 Sum_probs=273.8
Q ss_pred HHHHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHH
Q psy8366 39 AQNFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILV 118 (513)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~ 118 (513)
..++..+..+++.....+.+|.+. +++|+++.+.|++.+++.+++.++++++|+++||+|||++++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~ 97 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDILLPQFQ------------QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITG 97 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------------HHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH------------HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHH
Confidence 334455666677778889999998 89999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH---HhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhHh
Q psy8366 119 GFPFFLGWILL---YLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTD 195 (513)
Q Consensus 119 ~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~~ 195 (513)
.++.+++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|..+++.++..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 98 LFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 889999999999999999999999999999999999999999999999999999999999877653
Q ss_pred ------------------------------HHHHHHhhhHHHHHHHHHHHh--ccCchhhhhhcCChHHHHHHHHHhhCC
Q psy8366 196 ------------------------------WRTTVLISAIFPILTMIMIAF--IPESPTWLVSKGRLEEAERSLRWVRGW 243 (513)
Q Consensus 196 ------------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~ 243 (513)
||+.|++.+++.++..+..++ .||+++. ++++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~------------- 241 (438)
T 3o7q_A 178 LSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHSD------------- 241 (438)
T ss_dssp HTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCCC-------------
T ss_pred hcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cccc-------------
Confidence 999998888777766654444 3554321 0000
Q ss_pred CchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHH
Q psy8366 244 SKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEI 323 (513)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (513)
+++ .+...+ ++.+++++..+...+...+... .......+.|.+
T Consensus 242 -----------------------------~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 284 (438)
T 3o7q_A 242 -----------------------------AKQ---GSFSAS-LSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRY 284 (438)
T ss_dssp -----------------------------SST---TSHHHH-HHHHTTCSHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred -----------------------------ccc---cchhhh-HHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 000 000111 3444444433333333222222 234455777877
Q ss_pred -HHh-cCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHH
Q psy8366 324 -FRT-FGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCF 400 (513)
Q Consensus 324 -~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (513)
+++ .|++... +....+..++.+++.++.+++.||++||+.+..+..+..++.+++.... .........+.+
T Consensus 285 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g 358 (438)
T 3o7q_A 285 AVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG------GHVGLIALTLCS 358 (438)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHH
T ss_pred hhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC------CcHHHHHHHHHH
Confidence 766 4888776 7888888999999999999999999999999888877777665554422 222333333333
Q ss_pred HHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccc-hhHHHHHHHHHHHHHHh
Q psy8366 401 WVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFG-LHGTLFIYTLVSFLGFI 471 (513)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 471 (513)
.+. ....+..+++..|.+|++ ++.+.++.. ...+|+.++|.+.|.+.+..| ++..+.+.+++.++..+
T Consensus 359 ~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 359 AFM-SIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHH-TTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 333 445677778888998866 888888877 677999999999999999999 88888876655554444
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=5.1e-32 Score=268.74 Aligned_cols=391 Identities=13% Similarity=0.100 Sum_probs=248.4
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhh-cchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEY-IGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCE 153 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~ 153 (513)
+|+|++..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+++.+++++++|++.++++|+++|++.+...
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 5699999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred cchhhhhhccCCccc--cchhhhHhhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHHHHHHhc-cCch----h
Q psy8366 154 APIISYIGEISEPRM--RGSLSLFAGAACNFGVFIIFLIYALT----DWRTTVLISAIFPILTMIMIAFI-PESP----T 222 (513)
Q Consensus 154 ~~~~~~~~~~~~~~~--r~~~~~~~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~-~e~p----~ 222 (513)
+...++++|++|+++ |+.+.++++.+.++|..+++.++..+ +||+.|++.++..++..+..++. ++.. +
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL 206 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 999999999999988 77788888888899888888877664 89999999887777666544332 2211 0
Q ss_pred hhhhcCChHHHHHHHHH----------------hhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhh
Q psy8366 223 WLVSKGRLEEAERSLRW----------------VRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLL 286 (513)
Q Consensus 223 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (513)
....+.+.++.++..+. ..+..+.++. ............... . ....+++. .
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~-~~~~~~~~---------~ 274 (491)
T 4aps_A 207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAY-INLLTIVAIAIPVFY-F-AWMISSVK---------V 274 (491)
T ss_dssp CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHH-HHHHHHHHHHHHHHH-H-HHHC--------------
T ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccc-hhhhhHHHHHHHHHH-H-HHHhhccc---------c
Confidence 00111122232322222 0111110000 000000000000000 0 00000000 0
Q ss_pred hhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh-cCCCch-hHHHHHHHHHHHHHhhhHHHHhhcccCCchHH
Q psy8366 287 NYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT-FGLPMK-SEWVLVLTGILSITGSFVSTITVNKLGKRGMT 364 (513)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 364 (513)
....+++... ... .................+.+.+.++ .+.+.. .+.......++.+++.++.+++.||++||+..
T Consensus 275 ~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~ 352 (491)
T 4aps_A 275 TSTEHLRVVS-YIP-LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS 352 (491)
T ss_dssp -------CTT-HHH-HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred cHHHHHHHHH-HHH-HHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC
Confidence 0000111111 111 1111112222233444566666654 555533 36777788888899999999999999998655
Q ss_pred H-----HhhHHHHHHHHHHHHHHHhc----CCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHH
Q psy8366 365 L-----WSTGINTFFTLMLSICAMNL----QWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASS 435 (513)
Q Consensus 365 ~-----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 435 (513)
. .+..+.+++.+++....... +.+.+.......+.+.+. ....+..+.++.|.+|++.|+++.|+.+...
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 431 (491)
T 4aps_A 353 SPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGE-MLISPVGLSVTTKLAPKAFNSQMMSMWFLSS 431 (491)
T ss_dssp CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHH-HTTTTHHHHHHHHHTTTTCSSSSTHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4 56666666655554432111 112233333333333333 3446777889999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHhheeEEcccCC
Q psy8366 436 SVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETE 481 (513)
Q Consensus 436 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (513)
++|..++|.+.+.+.+. ++...+.+.+++++++.++.++..++.+
T Consensus 432 ~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 432 SVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888764 6667777777777776665554444443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.98 E-value=3.8e-33 Score=266.87 Aligned_cols=347 Identities=13% Similarity=0.121 Sum_probs=252.4
Q ss_pred HHHHhhhcccccccchhhhhhcccccccccccCCCCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhH
Q psy8366 41 NFLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGF 120 (513)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~ 120 (513)
+...+..++......+.+|.+. +++|.++.+.+++.+++.++..++++++|+++||+|||+++.++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~------------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 73 (375)
T 2gfp_A 6 VLLVAVGQMAQTIYIPAIADMA------------RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMS 73 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHH------------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 3444555566777778899998 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----hH
Q psy8366 121 PFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----DW 196 (513)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----~w 196 (513)
+.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+ +|
T Consensus 74 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 153 (375)
T 2gfp_A 74 IFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW 153 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988887654 99
Q ss_pred HHHHHhhhHHHHHHHH-HHHhccCchhhhhhcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchh
Q psy8366 197 RTTVLISAIFPILTMI-MIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTD 275 (513)
Q Consensus 197 r~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (513)
|+.|++.+++.++..+ ..+++||+++...+++ +.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------~~ 188 (375)
T 2gfp_A 154 RACYLFLLVLCAGVTFSMARWMPETRPVDAPRT---------------------------------------------RL 188 (375)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC---------------------------------------------CT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc---------------------------------------------cH
Confidence 9999999888877766 4556788754210000 00
Q ss_pred hcchhhhhhhhhhhccCCchhHHHHHHHHHHHHHhhchhchhhhHHHHHHh-cCCCchh-HHHHHHHHHHHHHhhhHHHH
Q psy8366 276 QRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRT-FGLPMKS-EWVLVLTGILSITGSFVSTI 353 (513)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~ 353 (513)
..+ ++..++++..+...+...+ ..........+.|.++++ .|.+... +.......++.+++.++.++
T Consensus 189 ------~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 257 (375)
T 2gfp_A 189 ------LTS-YKTLFGNSGFNCYLLMLIG----GLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGR 257 (375)
T ss_dssp ------TTC-STHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred ------HHH-HHHHhcCcchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 1222222222222222222 222233344555555544 6666555 78888888999999999999
Q ss_pred hhcccCCchHHHHhhHH-HHHHHH--HHHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHH
Q psy8366 354 TVNKLGKRGMTLWSTGI-NTFFTL--MLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGI 430 (513)
Q Consensus 354 l~d~~g~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 430 (513)
+.||.+++ ...+... ...+.. ...... ..+.+.......+.+.+. ....+...++..|..| ++|+++.|+
T Consensus 258 l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~p-~~~g~~~g~ 330 (375)
T 2gfp_A 258 PNKRFSTL--MWQSVICCLLAGLLMWIPDWFG---VMNVWTLLVPAALFFFGA-GMLFPLATSGAMEPFP-FLAGTAGAL 330 (375)
T ss_dssp TTTHHHHH--HHHHHHHHHHTSSSSSHHHHHH---HHHHHHHHHHHHHHHHHH-HHTSSTTHHHHHTHHH-HHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc---cccHHHHHHHHHHHHHHH-HHhhHHHHHHHHHhCC-cccchHHHH
Confidence 99998872 2222222 222221 111111 012232223333333333 3446777789999998 899999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccchhHHHHHH
Q psy8366 431 TAASSSVVNFISTKTYINLTSWFGLHGTLFIY 462 (513)
Q Consensus 431 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 462 (513)
.+...++|..++|.+.|.+.+..++...+.+.
T Consensus 331 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 331 VGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 99999999999999999998877776655553
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.96 E-value=2.7e-30 Score=250.08 Aligned_cols=354 Identities=11% Similarity=0.112 Sum_probs=217.0
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHH---HHHHhchhHH-HHHHHHHHhhcccc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGW---ILLYLAETVS-IIMLGTVCMGLSVG 150 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~---~~~~~~~~~~-~l~~~r~l~G~g~~ 150 (513)
+++|+|..+.|++.+++.++..++++++|+++||+|||++++++..+++++. ..+.+++... .++.++++.|++.+
T Consensus 36 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 115 (417)
T 2cfq_A 36 DINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLG 115 (417)
T ss_dssp TTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTT
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999998888775532 2223333221 24556777777766
Q ss_pred ccccchhhhhhccCCc--cccchhhhHhhHHHHHHHHHHHHHhhhH---hHHHHHHhhhHHHHHHHHHHHhccCchhhhh
Q psy8366 151 CCEAPIISYIGEISEP--RMRGSLSLFAGAACNFGVFIIFLIYALT---DWRTTVLISAIFPILTMIMIAFIPESPTWLV 225 (513)
Q Consensus 151 ~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~lG~~~~~~l~~~~---~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~ 225 (513)
...+.....+.++.++ ++|+...+....+..+|..+++.++..+ +||+.|++.+++.++..+..++.+|+|+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-- 193 (417)
T 2cfq_A 116 FCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPS-- 193 (417)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCCSC--
T ss_pred HHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCccccc--
Confidence 5555555555555543 3556666666555566666666665443 79999998877765555544444443210
Q ss_pred hcCChHHHHHHHHHhhCCCchhhHHHHHHHHHHhhccccccccccccchhhcchhhhhhhhhhhccCCchhHHHHHHHHH
Q psy8366 226 SKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILF 305 (513)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (513)
+.+.++. . +.++++ .+..+ ...+++++..+...+.....
T Consensus 194 -~~~~~~~-----------------------------------~-~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~ 232 (417)
T 2cfq_A 194 -SATVANA-----------------------------------V-GANHSA---FSLKL-ALELFRQPKLWFLSLYVIGV 232 (417)
T ss_dssp -SSCSSSS-----------------------------------S-SSCCCC---CCHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -ccccccc-----------------------------------c-cccccc---ccHHH-HHHHhcCCchhhHHHHHHHH
Confidence 0000000 0 000000 00111 22233332222222211111
Q ss_pred HHHHhhchhchhhhHHHHHHh-cCC---Cchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHH
Q psy8366 306 FITIIASLQPMRPFLVEIFRT-FGL---PMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSI 380 (513)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~-~g~---~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 380 (513)
.. .+.....+.|.++.+ .+. +... +....+..++.+++.++.++++||+|||+.+..+..+.+++.+.+..
T Consensus 233 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~ 308 (417)
T 2cfq_A 233 SC----TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp HH----HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HH----HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 11 122222345555543 221 1222 55666777888899999999999999999888777766665444322
Q ss_pred HHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHH-HHHHHHHHHHHHHHhhhhhhccchhHHH
Q psy8366 381 CAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGIT-AASSSVVNFISTKTYINLTSWFGLHGTL 459 (513)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 459 (513)
. .+.+...+...+..... ....+..+.+..|.+|++.|+++.++. +....+|++++|.+.|.+.+..|+...|
T Consensus 309 ~-----~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f 382 (417)
T 2cfq_A 309 A-----TSALEVVILKTLHMFEV-PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAY 382 (417)
T ss_dssp C-----CSHHHHHHHTTHHHHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHH
T ss_pred h-----ccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHH
Confidence 1 12222222222222221 122344567999999999999999994 8888999999999999999988888888
Q ss_pred HHHHHHHHHHHhheeEEcccCC
Q psy8366 460 FIYTLVSFLGFIYIYFYVPETE 481 (513)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~ 481 (513)
.+.+++++++.++.+...++++
T Consensus 383 ~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 383 LVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHHHHHHHHHHhhhcCCC
Confidence 8888888877765554444433
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.95 E-value=1.5e-27 Score=238.54 Aligned_cols=408 Identities=10% Similarity=0.061 Sum_probs=224.7
Q ss_pred CCcc------cchhhHHHHHHHHhhhhhhhHHHHHHhhhhc-chhhHHHHHhHHHHHHHHHHHhch-hHHHHHHHHHHhh
Q psy8366 75 PDLI------LSDEQSSWLGSILFLFHPFGSIISGYFLEYI-GRKRLMILVGFPFFLGWILLYLAE-TVSIIMLGTVCMG 146 (513)
Q Consensus 75 ~~~~------~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G 146 (513)
+++| ++..+.+++.+++.++..++++++|+++||+ |||+++.++.++.+++.+++++++ +++.++++|+++|
T Consensus 41 ~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 120 (524)
T 2xut_A 41 TALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIA 120 (524)
T ss_dssp HSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 5677 9999999999999999999999999999999 999999999999999999999999 9999999999999
Q ss_pred ccccccccchhhhhhccCCccccchhhhH---hhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHHHHHHhcc-
Q psy8366 147 LSVGCCEAPIISYIGEISEPRMRGSLSLF---AGAACNFGVFIIFLIYALT----DWRTTVLISAIFPILTMIMIAFIP- 218 (513)
Q Consensus 147 ~g~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~~~~~- 218 (513)
++.+...+...+++.|++|+++|+++.+. ...+.++|..+++.++..+ +||+.|++.+++.++..+..++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 121 LGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp HHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999877666 8888899999998887654 899999998888776666544332
Q ss_pred CchhhhhhcCChHHHHHHH-HHhhCCCchhhHHHHHHHHHHhhccccccccccc------------cchhhcchhhhhhh
Q psy8366 219 ESPTWLVSKGRLEEAERSL-RWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSE------------YTTDQRKSSQLSKL 285 (513)
Q Consensus 219 e~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 285 (513)
+.++...++.+..+..+.. ...+......+......+................ ...+++++.++...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (524)
T 2xut_A 201 RYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQL 280 (524)
T ss_dssp SCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHH
T ss_pred cccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHH
Confidence 2110000000000000000 0001000000000000000000000000000000 00000000011000
Q ss_pred h--hhhc---cCCchhHHH--HHHHHHHHHHhhchhchhhhHHHHHHhcCCCc--hhHHHHHHHHHHHHHhhhHHHHhh-
Q psy8366 286 L--NYLV---RPEIVRPFI--MIMILFFITIIASLQPMRPFLVEIFRTFGLPM--KSEWVLVLTGILSITGSFVSTITV- 355 (513)
Q Consensus 286 ~--~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~g~l~- 355 (513)
. +... ..+..++.. .............+.....+++.+....+.+. ..+.......++.+++.++.+++.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (524)
T 2xut_A 281 ERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLY 360 (524)
T ss_dssp HHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC--
T ss_pred hhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhH
Confidence 0 0000 001111111 11111111111112222233343333333322 234444444455555666665553
Q ss_pred ---cccCC----chHHHHhhHHHHHHHHHHHHHHHh----cCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhh
Q psy8366 356 ---NKLGK----RGMTLWSTGINTFFTLMLSICAMN----LQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVR 424 (513)
Q Consensus 356 ---d~~g~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 424 (513)
+|.++ ++.+..+..+.+++.+++...... ...+.+.......+.+. ......+..+++..|..|++.|
T Consensus 361 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~p~~~~ 439 (524)
T 2xut_A 361 PAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF-GEVLVSATGLEFAYSQAPKAMK 439 (524)
T ss_dssp ----------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH-HHHHHHHHHTTTHHHHCCTTCC
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHH
Confidence 44432 234455555555554444332100 01122222233333333 2234457777899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhccc--h---------hHHHHHHHHHHHHHHhheeEEcccCCCC
Q psy8366 425 GIASGITAASSSVVNFISTKTYINLTSWFG--L---------HGTLFIYTLVSFLGFIYIYFYVPETEDR 483 (513)
Q Consensus 425 ~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (513)
|+++|+.++..++|+.++|.+.+.+.+..+ | ...+++.+++++++.++.+++.++.+++
T Consensus 440 g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (524)
T 2xut_A 440 GTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQ 509 (524)
T ss_dssp TTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999887432 1 2236667777777666555555554433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.49 E-value=4e-14 Score=138.30 Aligned_cols=179 Identities=10% Similarity=0.105 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHhhchhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHH
Q psy8366 299 IMIMILFFITIIASLQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLM 377 (513)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 377 (513)
+....+..+.............|.+.++. .+... ++..+...++..++.++.|+++||+|||+.+..+..+.+++.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 108 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLF 108 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 33333333333434555667778777777 77766 88999999999999999999999999999999999999888887
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccc-hh
Q psy8366 378 LSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFG-LH 456 (513)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~ 456 (513)
+.+.... ..+.+..++...+.+.+. ....+...+++.|.+|+++|+.+.|+.+....+|..++|.+.+.+.+..| |+
T Consensus 109 ~~~~~~~-~~~~~~l~~~~~l~G~~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~ 186 (451)
T 1pw4_A 109 MGFVPWA-TSSIAVMFVLLFLCGWFQ-GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWH 186 (451)
T ss_dssp HHHCHHH-HSSSSHHHHHHHHHHHHH-HHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCST
T ss_pred HHhhhhc-cccHHHHHHHHHHHHHHh-hhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 7762100 013444444444444333 34567777899999999999999999999999999999999999889888 99
Q ss_pred HHHHHHHHHHHHHHhheeEEcccC
Q psy8366 457 GTLFIYTLVSFLGFIYIYFYVPET 480 (513)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~ 480 (513)
..|++.+++.++..++.++..+|.
T Consensus 187 ~~f~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T 1pw4_A 187 AALYMPAFCAILVALFAFAMMRDT 210 (451)
T ss_dssp TCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHhhccCC
Confidence 999998888777665554455544
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.44 E-value=9.6e-13 Score=125.14 Aligned_cols=163 Identities=10% Similarity=0.006 Sum_probs=129.9
Q ss_pred hhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchh
Q psy8366 313 LQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWI 391 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
........|.+.++.|.+... ++..+...++..++.++.|+++||+|||+.+..+..+..++.+++.... +.+.
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~~ 90 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS-----SLTV 90 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH-----HHHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc-----cHHH
Confidence 444556677777788988877 8889999999999999999999999999999999999888887777654 3333
Q ss_pred hHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHh
Q psy8366 392 PLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFI 471 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 471 (513)
..+...+.+.+. ....+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..+.+.+++.++..+
T Consensus 91 l~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 91 LIAASAMQGMGT-GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 333333333333 3456677789999999999999999999999999999999999999988999999988888877766
Q ss_pred heeEEcccCC
Q psy8366 472 YIYFYVPETE 481 (513)
Q Consensus 472 ~~~~~~~~~~ 481 (513)
...+..||++
T Consensus 170 ~~~~~~~~~~ 179 (375)
T 2gfp_A 170 SMARWMPETR 179 (375)
T ss_dssp CCCCSSCCCS
T ss_pred HHHHHCcccC
Confidence 5555555543
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.43 E-value=6.5e-13 Score=129.18 Aligned_cols=157 Identities=10% Similarity=-0.090 Sum_probs=122.0
Q ss_pred hhchhhhHHHHHHhcCCCchh-HHHHHHHHHHHHHhhhHHHHhhcccCCchHHHHhhHHHHHHHHHHHHHHHhcCCCchh
Q psy8366 313 LQPMRPFLVEIFRTFGLPMKS-EWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWI 391 (513)
Q Consensus 313 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
........|.+.+++|.+..+ ++..+...++..++.++.|+++||+|||+.+..+..+.+++.++...... ..+.+.
T Consensus 42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~~~~~~ 119 (438)
T 3o7q_A 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--IMNYTL 119 (438)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHH
T ss_pred HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc--cccHHH
Confidence 456667788887889999887 89999999999999999999999999999999999999888877733221 113343
Q ss_pred hHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhh-hccc----------------
Q psy8366 392 PLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLT-SWFG---------------- 454 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~-~~~g---------------- 454 (513)
.++...+.+.+. ....+...+++.|.+|+++|+.+.++.+....+|..++|.+.+.+. +..+
T Consensus 120 l~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 198 (438)
T 3o7q_A 120 FLVGLFIIAAGL-GCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLS 198 (438)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHH
T ss_pred HHHHHHHHHhhH-HHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhh
Confidence 333334444333 3445677789999999999999999999999999999999999988 5544
Q ss_pred ---------hhHHHHHHHHHHHHHHhh
Q psy8366 455 ---------LHGTLFIYTLVSFLGFIY 472 (513)
Q Consensus 455 ---------~~~~~~~~~~~~~~~~~~ 472 (513)
|+..+++.+++.++..++
T Consensus 199 ~~~~~~~~~w~~~~~~~~~~~~~~~~~ 225 (438)
T 3o7q_A 199 AYKHSLVLSVQTPYMIIVAIVLLVALL 225 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 788887776666555443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.36 E-value=6e-12 Score=124.33 Aligned_cols=156 Identities=12% Similarity=0.136 Sum_probs=120.7
Q ss_pred hhchhhhHHHHHH-h-----cCCCchh-HHHHHHHHHHHHHhhhHHHHhhcc-cCCchHHHHhhHHHHHHHHHHHHHHHh
Q psy8366 313 LQPMRPFLVEIFR-T-----FGLPMKS-EWVLVLTGILSITGSFVSTITVNK-LGKRGMTLWSTGINTFFTLMLSICAMN 384 (513)
Q Consensus 313 ~~~~~~~~~~~~~-~-----~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (513)
++....+.+.+++ . +|.+... ++..+...++..++.++.|+++|| +|||+.+..+..+..++.+++....
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~-- 106 (491)
T 4aps_A 29 YYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPF-- 106 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhh--
Confidence 3444455666654 3 7888776 888999999999999999999999 8999999999888888877665432
Q ss_pred cCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhh--hhHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHH
Q psy8366 385 LQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQV--RGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIY 462 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 462 (513)
+.+...+...+.+.+. ....+...+++.|.+|+++ |+.+.++.+...++|..++|.+.+.+.+..||+..|++.
T Consensus 107 ---~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~ 182 (491)
T 4aps_A 107 ---GASALFGSIILIIIGT-GFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLA 182 (491)
T ss_dssp ---STTHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHH-HhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3343333333333333 3456777789999999888 888888899999999999999999999999999999988
Q ss_pred HHHHHHHHhhee
Q psy8366 463 TLVSFLGFIYIY 474 (513)
Q Consensus 463 ~~~~~~~~~~~~ 474 (513)
++..+++.++..
T Consensus 183 ~~~~~~~~~~~~ 194 (491)
T 4aps_A 183 AIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777666655443
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.33 E-value=1.9e-11 Score=121.76 Aligned_cols=155 Identities=17% Similarity=0.097 Sum_probs=117.1
Q ss_pred hchhhhHHHHHH-hcC------CCchh-HHHHHHHHHHHHHhhhHHHHhhccc-CCchHHHHhhHHHHHHHHHHHHHHHh
Q psy8366 314 QPMRPFLVEIFR-TFG------LPMKS-EWVLVLTGILSITGSFVSTITVNKL-GKRGMTLWSTGINTFFTLMLSICAMN 384 (513)
Q Consensus 314 ~~~~~~~~~~~~-~~g------~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (513)
+....+++.++. +.| ++... ++......++..++.++.|+++||+ |||+.+..+..+..++.+++....
T Consensus 29 ~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~-- 106 (524)
T 2xut_A 29 YGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE-- 106 (524)
T ss_dssp HHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS--
T ss_pred HHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc--
Confidence 334456666654 577 77776 8888999999999999999999999 999999988888887776665421
Q ss_pred cCCCchhhHHHHHHHHHHHhccccchhhhhhccccchhhhhHHHHH---HHHHHHHHHHHHHHHhhhhhhccchhHHHHH
Q psy8366 385 LQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGI---TAASSSVVNFISTKTYINLTSWFGLHGTLFI 461 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 461 (513)
.+.+...+...+.+.+. ....+...+++.|.+|+++|+.+.+. .+...++|..++|.+.+.+.+..||+..|.+
T Consensus 107 --~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~ 183 (524)
T 2xut_A 107 --HSVQGFYTGLFLIALGS-GGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGI 183 (524)
T ss_dssp --SCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHH
T ss_pred --ccHHHHHHHHHHHHHhc-cccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 12333333333333333 34567777899999999999776666 8889999999999999999998899999988
Q ss_pred HHHHHHHHHhhe
Q psy8366 462 YTLVSFLGFIYI 473 (513)
Q Consensus 462 ~~~~~~~~~~~~ 473 (513)
.+++.+++.++.
T Consensus 184 ~~~~~~~~~~~~ 195 (524)
T 2xut_A 184 PGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887776665543
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.28 E-value=8.4e-12 Score=120.30 Aligned_cols=143 Identities=10% Similarity=0.083 Sum_probs=116.8
Q ss_pred cchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhchhHHHHHHHHHHhhccccccccchhh
Q psy8366 79 LSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIIS 158 (513)
Q Consensus 79 ~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~ 158 (513)
.+....+++.++..++..++.++.|++.||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888999999999999999999999999999998888888888888888888888888887767777788
Q ss_pred hhhccCCccccchhhhH-hhHHHHHHHHHHHHHhhhH----hHHHHHHhhhHHHHHHHHHH-HhccCch
Q psy8366 159 YIGEISEPRMRGSLSLF-AGAACNFGVFIIFLIYALT----DWRTTVLISAIFPILTMIMI-AFIPESP 221 (513)
Q Consensus 159 ~~~~~~~~~~r~~~~~~-~~~~~~lG~~~~~~l~~~~----~wr~~f~~~~~~~~~~~~~~-~~~~e~p 221 (513)
++.|.+|++.|++..++ ++....+|..++|.+++.+ +++..|.+.+++.++..++. ++.||++
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999998888 4767777777777766543 78889988888887776653 4456654
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.25 E-value=3.3e-11 Score=118.96 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=106.1
Q ss_pred CCcccchhhHHHHHHHHhhhhhhhHHHHHHhhhhcchhhHHHHHhHHHHHHHHHHHhch-----hHHHHH-HHHHHhhcc
Q psy8366 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAE-----TVSIIM-LGTVCMGLS 148 (513)
Q Consensus 75 ~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-----~~~~l~-~~r~l~G~g 148 (513)
++.+.+............+...++.++.+++.||+|||+.++.+....+++.+..+... +...+. +.-+..+++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (491)
T 4gc0_A 305 KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA 384 (491)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 55566777777777778888899999999999999999999999888887776654331 222222 222233333
Q ss_pred ccccccchhhhhhccCCccccchhhhHhhHHHHHHHHHHHHHhhhH----------hHHHHHHhhhHHHHHHHH-HHHhc
Q psy8366 149 VGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT----------DWRTTVLISAIFPILTMI-MIAFI 217 (513)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~~----------~wr~~f~~~~~~~~~~~~-~~~~~ 217 (513)
. ...+....+.+|.+|.+.|+++.++......+|..+++.+...+ ++.+.|++.++++++..+ .++++
T Consensus 385 ~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~ 463 (491)
T 4gc0_A 385 M-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFV 463 (491)
T ss_dssp T-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred h-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhee
Confidence 2 34567778999999999999999999988888887776554322 455677888888877776 56779
Q ss_pred cCc
Q psy8366 218 PES 220 (513)
Q Consensus 218 ~e~ 220 (513)
|||
T Consensus 464 PET 466 (491)
T 4gc0_A 464 PET 466 (491)
T ss_dssp CCC
T ss_pred cCC
Confidence 998
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=62.48 E-value=3.9 Score=19.47 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=11.5
Q ss_pred HHHHhhhhcchhhH
Q psy8366 101 ISGYFLEYIGRKRL 114 (513)
Q Consensus 101 ~~g~l~dr~Grr~~ 114 (513)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36889999999865
No 16
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=25.83 E-value=83 Score=16.76 Aligned_cols=11 Identities=27% Similarity=0.591 Sum_probs=7.5
Q ss_pred HHHHhccCchh
Q psy8366 212 IMIAFIPESPT 222 (513)
Q Consensus 212 ~~~~~~~e~p~ 222 (513)
....+.+|+|+
T Consensus 18 FFAI~FRePPr 28 (32)
T 3arc_T 18 FFAIFFREPPR 28 (32)
T ss_dssp HHHHHTSCCCC
T ss_pred HHhhhhcCCCC
Confidence 34556788886
No 17
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=22.41 E-value=2e+02 Score=25.76 Aligned_cols=18 Identities=6% Similarity=-0.080 Sum_probs=10.5
Q ss_pred hHHHHHHhhhHHHHHHHH
Q psy8366 195 DWRTTVLISAIFPILTMI 212 (513)
Q Consensus 195 ~wr~~f~~~~~~~~~~~~ 212 (513)
++.|.|++.-+++.+...
T Consensus 245 ~~~WVywvgPiiGailaa 262 (340)
T 3iyz_A 245 ENHWIYWVGPIIGAVLAG 262 (340)
T ss_pred CcEeehhHHHHHHHHHHH
Confidence 345677776666654443
No 18
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=22.17 E-value=1.7e+02 Score=23.87 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=18.4
Q ss_pred HHHHhhhhhhhHHHHHHhhhhcchh
Q psy8366 88 GSILFLFHPFGSIISGYFLEYIGRK 112 (513)
Q Consensus 88 ~s~~~l~~~i~~~~~g~l~dr~Grr 112 (513)
+.-|.+|+.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3456677788888888888887644
Done!