RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8366
(513 letters)
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 166 bits (422), Expect = 9e-46
Identities = 104/430 (24%), Positives = 198/430 (46%), Gaps = 36/430 (8%)
Query: 79 LSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAET---V 135
S + SI + G++ +G+ + GRK+ ++++ F +G IL+ LA V
Sbjct: 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSV 127
Query: 136 SIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT- 194
++++G V +G+ VG A + Y+ EI+ +RG+L+ A FG+ + + +
Sbjct: 128 EMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKV 187
Query: 195 ------DWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHK 248
WR + + I L + + F+PESP WLV KGR+EEA +SL +RG S + K
Sbjct: 188 SLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDK 247
Query: 249 VRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFIT 308
++ +L+ + S S + I R + ++L +
Sbjct: 248 ELLDELELID---------IKRSIEKRSVQPSWGSL---FSSTRRIRRRLFLGVVLQWFQ 295
Query: 309 IIASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITG---SFVSTITVNKLGKRGMTL 365
+ + + IF G + ++ +++ I+ +FV+ V++ G+R + L
Sbjct: 296 QFTGINAIMYYSPTIFENAG--VSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLL 353
Query: 366 WSTGINTFFTLMLSICAM-----NLQWPGWIPLTIFCTCFWVSGYGM--LPLPWMLLSEV 418
+L I + + G + I +++ + M P+PW+++SE+
Sbjct: 354 IGAAGMAICLFVLGILGASFVTGSSKSSGNVA--IVFILLFIAFFAMGWGPVPWVIVSEI 411
Query: 419 FPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVP 478
FPL +R I A++ + NFI + + G+ G + ++ LG I++YF++P
Sbjct: 412 FPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLP 471
Query: 479 ETEDRTLQEI 488
ET+ RTL+EI
Sbjct: 472 ETKGRTLEEI 481
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 165 bits (420), Expect = 1e-45
Identities = 108/426 (25%), Positives = 194/426 (45%), Gaps = 33/426 (7%)
Query: 76 DLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETV 135
S S + SI + GS+ +G + GRK+ +++ F +G +L A+
Sbjct: 40 ACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGK 99
Query: 136 SIIML--GTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL 193
S ML G V +GL VG + YI EI+ ++RG+L FG+ + +I
Sbjct: 100 SFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLG 159
Query: 194 TD-------WRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKK 246
+ WR + + + IL +I + F+PESP WLV KG+LEEA L +RG S
Sbjct: 160 LNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVS-- 217
Query: 247 HKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVR-PEIVRPFIMIMILF 305
V E ++ E + +R L R + + +M ++L
Sbjct: 218 -DVDQEIQE---------------EKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQ 261
Query: 306 FITIIASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTL 365
+ + + + IF T GL S V ++ G+++ +F++ V++ G+R + L
Sbjct: 262 IFQQLTGINAIFYYSPTIFETLGLS-DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLL 320
Query: 366 WSTGINTFFTLMLSICAMNLQWPGWI-PLTIFCTCFWVSGYGM--LPLPWMLLSEVFPLQ 422
L+L + + + + I +++ + + P+PW+++SE+FPL
Sbjct: 321 LGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLG 380
Query: 423 VRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETED 482
VR A I A++ + NF+ + +T G ++ + L ++++F+VPET+
Sbjct: 381 VRPKAMAIATAANWLANFLIGFLFPIITGAIGG-YVFLVFAGLLVLFILFVFFFVPETKG 439
Query: 483 RTLQEI 488
RTL+EI
Sbjct: 440 RTLEEI 445
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 105 bits (264), Expect = 2e-24
Identities = 119/495 (24%), Positives = 218/495 (44%), Gaps = 101/495 (20%)
Query: 48 GMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLG---SILFLFHPFGSIISGY 104
G+ FG T V+ V S T+ +P + +S LG + + G + GY
Sbjct: 21 GLLFGYDTAVI---SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGY 77
Query: 105 FLEYIGRKRLMILVGFPFFLGWI----------------LLYLAETVSIIMLGTVCMGLS 148
GR+ + + FF+ + Y+ E V ++G + +GL+
Sbjct: 78 CSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLA 137
Query: 149 VGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLI-YALTD-----------W 196
P+ YI EI+ +RG L F A FG +++ + Y + W
Sbjct: 138 SMLS--PM--YIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW 193
Query: 197 RTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQL 256
R AI +L ++++ F+PE+P +L+S+G+ E+AE LR + G
Sbjct: 194 RYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMG-------------- 239
Query: 257 VKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILF-----FITIIA 311
AT + + +++ D + + KLL + V I+I ++ F+ I
Sbjct: 240 ---NTLATQALQEIKHSLDHGRKTG-GKLLMFGVG------VIVIGVMLSVFQQFVGINV 289
Query: 312 SLQPMRPFLVEIFRTFGLPMKSEWVL-VLTGILSITGSFVSTITVNKLGKR--------G 362
L + EIF+T G + ++ G++++T + ++ +TV+K G++ G
Sbjct: 290 VLY----YAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALG 345
Query: 363 MTLWSTGINT-FFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGML--PLPWMLLSEVF 419
M + + T F+T Q PG + L F+V+ + M P+ W+LLSE+F
Sbjct: 346 MAIGMFSLGTAFYT----------QAPGIVALL--SMLFYVAAFAMSWGPVCWVLLSEIF 393
Query: 420 PLQVRGIASGITAASSSVVNFISTKTY--INLTSWFGLHG----TLFIYTLVSFLGFIYI 473
P +RG A I A+ + N+ + T+ ++ SW H + +IY + L +++
Sbjct: 394 PNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM 453
Query: 474 YFYVPETEDRTLQEI 488
+ +VPET+ +TL+E+
Sbjct: 454 WKFVPETKGKTLEEM 468
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 73.6 bits (181), Expect = 3e-14
Identities = 73/374 (19%), Positives = 135/374 (36%), Gaps = 59/374 (15%)
Query: 76 DLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETV 135
DL +S + L + L + ++G + GR+R++++ F LG +LL A ++
Sbjct: 26 DLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSL 85
Query: 136 SIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGS----LSLFAGAACNFGVFIIFLIY 191
++++ V GL G + I + P RG LS G G + L+
Sbjct: 86 WLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLA 145
Query: 192 ALTDWRTTVLISAIFPILTMIMIA-FIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVR 250
+L WR LI AI +L ++ A +P P EEA L
Sbjct: 146 SLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLV------------ 193
Query: 251 VEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITII 310
L+R ++ ++++ +L F
Sbjct: 194 ---------------------------------PAWKLLLRDPVL--WLLLALLLFGFAF 218
Query: 311 ASLQPMRPFLVEIFRTFGL-PMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTG 369
+L P E GL + + +L L G+L G + ++LG+R L +
Sbjct: 219 FALLTYLPLYQE---VLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALL 275
Query: 370 INTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASG 429
+ L L++ ++ + + + P L+S++ P + RG ASG
Sbjct: 276 LLILAALGLALLSLTESSLWLLVALLLLGFGAG---LVFPALNALVSDLAPKEERGTASG 332
Query: 430 ITAASSSVVNFIST 443
+ + S+ +
Sbjct: 333 LYNTAGSLGGALGP 346
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 69.3 bits (170), Expect = 1e-12
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 4/147 (2%)
Query: 76 DLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETV 135
DL LS Q+ + S L + GS+++GY + GR+R+++L F LG +LL A ++
Sbjct: 28 DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSL 87
Query: 136 SIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGV----FIIFLIY 191
++++G +GL G + I E P+ RG A G + L+
Sbjct: 88 WLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA 147
Query: 192 ALTDWRTTVLISAIFPILTMIMIAFIP 218
WR LI AI +L +++ F+
Sbjct: 148 ESLGWRWLFLILAILGLLLALLLLFLL 174
Score = 57.3 bits (139), Expect = 6e-09
Identities = 34/145 (23%), Positives = 72/145 (49%), Gaps = 5/145 (3%)
Query: 79 LSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFF-LGWILLYLAETVSI 137
LS ++ L S+ L G+++ G + +GR+RL++L+G LG +LL LA ++++
Sbjct: 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267
Query: 138 IMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL---- 193
+++ + +G +G +++ E++ P RG+ S + G + L+ L
Sbjct: 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT 327
Query: 194 TDWRTTVLISAIFPILTMIMIAFIP 218
+ LI A +L +++ +P
Sbjct: 328 GGYGGVFLILAALALLAALLLLLLP 352
Score = 51.9 bits (125), Expect = 3e-07
Identities = 32/186 (17%), Positives = 67/186 (36%), Gaps = 8/186 (4%)
Query: 294 IVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGL--PMKSEWVLVLTGILSITGSFVS 351
++R +++ + FF+ + +L + ++ +L L G+ I G+ +
Sbjct: 173 LLRLLLLLALAFFLLSFGYYGLL-TYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLG 231
Query: 352 TITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLP 411
+ ++LG+R + L + L L + A+ + + P
Sbjct: 232 GLLSDRLGRRRLLLLIGLL--LAALGLLLLALAPSLALLLVALLLLG---FGLGFAFPAL 286
Query: 412 WMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFI 471
L SE+ P + RG ASG+ S+ + L G G I ++ L +
Sbjct: 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAAL 346
Query: 472 YIYFYV 477
+
Sbjct: 347 LLLLLP 352
Score = 41.5 bits (98), Expect = 7e-04
Identities = 28/181 (15%), Positives = 62/181 (34%), Gaps = 7/181 (3%)
Query: 299 IMIMILFFITIIASLQPMRPFLVEIFRTFGL-PMKSEWVLVLTGILSITGSFVSTITVNK 357
++++ L F + P L + GL ++ ++ + GS ++ ++
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 358 LGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSE 417
G+R + L + +L + A + + P L++E
Sbjct: 61 FGRRRVLLLGLLLFALGSL---LLAFASSLWLLLVGRFLLGLGGG---ALYPAAAALIAE 114
Query: 418 VFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYV 477
FP + RG A G+ +A + + L G I ++ L + + F +
Sbjct: 115 WFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
Query: 478 P 478
Sbjct: 175 R 175
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 68.9 bits (169), Expect = 2e-12
Identities = 80/414 (19%), Positives = 161/414 (38%), Gaps = 76/414 (18%)
Query: 98 GSIISGYFLEYIGRKRLMIL---------------VGFPFFLGWILLYLAETVSIIMLGT 142
GS + GY + GRK++++L + FL + LL + I +
Sbjct: 143 GSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL---VGMGIGGIWV 199
Query: 143 VCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLI-YALTDWRTTVL 201
+ L+ E + R + + G+ ++ L+ Y + DWR L
Sbjct: 200 QAVVLNT------------EFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQL 247
Query: 202 ISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTN 261
++ L ++ F+PESP WL+S+GR+EEA + L+ + + K
Sbjct: 248 AVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKK-------------- 293
Query: 262 SATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLV 321
V D S + L+ P + + + +M+L+F T
Sbjct: 294 -LPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTT------------- 339
Query: 322 EIFRTFGLPMKSE-------WVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFF 374
F +GL + L ++G++ + ++ + +++LG+R S +
Sbjct: 340 -AFSYYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVA 398
Query: 375 TLMLSICAMNLQWPGWIPLTIFCTCFWVSG-YGMLPLPWMLLSEVFPLQVRGIASGITAA 433
L+L ++L + F ++ + M+ ++ +E++P VR + G+ +
Sbjct: 399 LLLLLFVPVDLYF--LRTALAVLGKFGITSAFQMV---YLYTAELYPTVVRNLGVGVCST 453
Query: 434 SSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQE 487
+ V + IS ++ L L ++ ++ L I F +PET+ L E
Sbjct: 454 MARVGSIIS--PFLVYLGEKWLFLPLVLFGGLALLAGILTLF-LPETKGVPLPE 504
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 57.3 bits (138), Expect = 1e-08
Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 32/220 (14%)
Query: 43 LLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIIS 102
L F LG+A V V V+ + S + DL + D LG I++L G+
Sbjct: 168 LFFVLGLALMADGVEVFVVGFVLPSAEK-----DLCIPDSGKGMLGLIVYLGMMVGAFFW 222
Query: 103 GYFLEYIGRKR-LMILVG----FPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPII 157
G + +GRK+ L+I + F FF ++ Y + + G +G +
Sbjct: 223 GGLADKLGRKQCLLICLSVNGFFAFFSSFVQGY-----GFFLFCRLLSGFGIGGAIPIVF 277
Query: 158 SYIGEISEPRMRGS----LSLF------AGAACNFGV-------FIIFLIYALTDWRTTV 200
SY E RG L +F AA + + F + Y WR V
Sbjct: 278 SYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFV 337
Query: 201 LISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWV 240
++ A + + + F+PESP + + G+ +EA L+ +
Sbjct: 338 IVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLI 377
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 55.1 bits (133), Expect = 3e-08
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Query: 74 SPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAE 133
S + L Q +L S + FG++ G + IGR+R+++ F + +L LA
Sbjct: 44 SAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALAT 103
Query: 134 TVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSL--SLFAGAACNF--GVFIIFL 189
V+ +++ GL +G + + + E + R RG+ +F G G F+
Sbjct: 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGW 163
Query: 190 IYALTDWRTTVLISAIFPILTM-IMIAFIPESPTWLVSKG 228
+ + WR+ + I P+L + +++ F+PES +LVSK
Sbjct: 164 LIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR 203
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 51.5 bits (124), Expect = 6e-08
Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
Query: 97 FGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPI 156
S +SG + GRK ++++ F F L + L+ ++++++ G
Sbjct: 13 IYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAG 72
Query: 157 ISYIGEISEPRMR----GSLSLFAGAACNFGVFIIFLIYALTDWRTTVLISAIFPILTMI 212
+ I +I P R G +S G + ++ WR L AI + I
Sbjct: 73 AALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFI 132
Query: 213 MIAFIPE 219
++AF+
Sbjct: 133 LLAFLLP 139
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 51.8 bits (125), Expect = 4e-07
Identities = 78/457 (17%), Positives = 146/457 (31%), Gaps = 88/457 (19%)
Query: 35 TASVAQNFLLFSLGM-AFGMPT---VVVGVLDHKVASNQTILESPDLILSDEQSSWLGSI 90
TA L +L + AF + T V VG+L +A+ DL +S+ + L +
Sbjct: 6 TARKPMWLALLALALAAFAIGTTEFVPVGLLP-PIAA--------DLGVSEGAAGQLITA 56
Query: 91 LFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVG 150
L G+ + + R+RL++ + F + +L LA + ++++L GL+ G
Sbjct: 57 YALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHG 116
Query: 151 CCEAPIISYIGEISEPRMRGS-LSLFAG---AACNFGVFIIFLIYALTDWRTTVLISAIF 206
+ + + P RG L+L A GV + + L WR T L A+
Sbjct: 117 VFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVL 176
Query: 207 PILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLY 266
+L ++++ L LR +
Sbjct: 177 ALLALLLLWK------LLPPSEISGSLPGPLRTLLRL----------------------- 207
Query: 267 VADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEI--F 324
L RP ++ + LF A +RPFL + F
Sbjct: 208 ----------------------LRRPGVLLGLLATF-LFMTGHFALYTYIRPFLESVAGF 244
Query: 325 RTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMN 384
+ VL+ GI G+ + ++ G R + + + L L+
Sbjct: 245 SVSAVS----LVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTF---- 295
Query: 385 LQWPGWIPLTIFCTCFWVSGYGMLPLP---WMLLSEVFPLQVRGIASGITAASSSVVNFI 441
L + W G+ P L+ + P +A + A+ ++ +
Sbjct: 296 --TGASPALALALLFLW--GFAFSPALQGLQTRLARLAP-DAADLAGSLNVAAFNLGIAL 350
Query: 442 STKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVP 478
+ G T ++ + L +
Sbjct: 351 GAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 49.9 bits (120), Expect = 2e-06
Identities = 57/409 (13%), Positives = 129/409 (31%), Gaps = 99/409 (24%)
Query: 111 RKRLMILVGFPFFLGWILLY-----LAETVSIIMLGT--VCMGLSVGCCEAPIISYIGEI 163
+ +++ P + +LL+ L+ T +I + +GL+ P S I +
Sbjct: 69 FRPWLLIGAIPLAISLVLLFATPFGLSMTAKLIYAFITYILLGLAYTFVNIPYWSLIPVL 128
Query: 164 SE-PRMRGSLSLFAGAACNFGVFIIFLIY-----------ALTDWRTTVLISAIFPILTM 211
+ P+ R SL+ + G ++ +I + LI AI ++
Sbjct: 129 TRDPKERTSLASYRRIGATIGGLLVAVIAPPLVALLGGGNGAKGYFLAALIIAILAVVGF 188
Query: 212 IMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSE 271
++ + +K R+ +K +R F+ L K+
Sbjct: 189 LI--------CFAGTKERVSVPPEQ-------KEKVSLRDMFKALFKN------------ 221
Query: 272 YTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFR-TFGLP 330
RP +++++L+ + +A + L+ F G
Sbjct: 222 ------------------------RPLLILLLLYLLNALA-MAVRNGLLLYYFTYVLGNA 256
Query: 331 MKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGW 390
+L++ I +I G+ + + GK+ L + ++L L
Sbjct: 257 GLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFF----LPPGSL 312
Query: 391 IPLTIFCTCFWVSGYGMLPLPWMLLSEV---------------------FPLQV-RGIAS 428
+ + LPW +L++V F ++ +
Sbjct: 313 WLFLVLVVLAGIGLGLATLLPWAMLADVVDYGEWKTGKRREGITFSLYSFADKLGGALGG 372
Query: 429 GITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLV-SFLGFIYIYFY 476
I + +++ T + + G+ + V + L + + FY
Sbjct: 373 AIVGLLLAFAGYVANATAQSAAALSGIRLLFTLIPAVLALLALLILRFY 421
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 48.5 bits (116), Expect = 5e-06
Identities = 70/421 (16%), Positives = 139/421 (33%), Gaps = 66/421 (15%)
Query: 76 DLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRL--MILVGFPFFLGWILLYLAE 133
DL LS Q ++ S + G G+ L+ G ++ + +V + F G + +
Sbjct: 23 DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTG-LQAFAGA 81
Query: 134 TVSIIMLGTVCMGLSVGCCEAPIISYIGEISE----PRMRGSLS----LFAGAACNFGVF 185
VS+ +L + +G EAP I I R + G G
Sbjct: 82 YVSLYILRVL-----LGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGP 136
Query: 186 IIFLIYALTDWRTTVLISAIFPILTMIMIAFI-----PESPTWLVSKGRLEEAERSLRWV 240
++ I W+ +I + I+ ++ P+ WL + + L
Sbjct: 137 LVGWILIHFSWQWAFIIEGVLGII-WGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQ 195
Query: 241 RGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIM 300
+G + + ++L+KD L + L +
Sbjct: 196 QGKGPSTPKKYQIKELLKDRRVWGLALGQF-----------LVNIGLG------------ 232
Query: 301 IMILFFITIIASLQPMRPFLVEIFRTFGL-PMKSEWVLVLTGILSITGSFVSTITVNKLG 359
+ +F T + + GL +++ ++ L GI+ G + + L
Sbjct: 233 FFLTWFPTY-------------LVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLL 279
Query: 360 KRGMTL-WS--TGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLS 416
+RG +L ++ T I L L + A N + L + G G + W L+S
Sbjct: 280 RRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALV--ALGFFGLGAGAIGWALIS 337
Query: 417 EVFPLQVRGIASGITAASSSVVNFI--STKTYINLTSWFGLHGTLFIYTLVSFLGFIYIY 474
+ P + G+ G+ + ++ + I T+ + + L Y+
Sbjct: 338 DNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLL 397
Query: 475 F 475
Sbjct: 398 L 398
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 47.8 bits (114), Expect = 1e-05
Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 21/166 (12%)
Query: 336 VLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIP--- 392
++ L G ++ G +V+ V+ +G++ + L FF L + + +
Sbjct: 342 IIALAG--TVPGYWVTVFLVDIIGRKPIQLMG-----FFILTVLFFVLGFAYNHLSTHGF 394
Query: 393 LTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLT-- 450
L I+ + + +G +++ EVFP + R A GI+AAS I ++ L
Sbjct: 395 LAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH 454
Query: 451 --------SWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEI 488
+ + L I+ L FLG I +PET+ ++L+E+
Sbjct: 455 GDPTKGYPTGIWMGHVLEIFALFMFLG-ILFTLLIPETKGKSLEEL 499
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 45.3 bits (107), Expect = 5e-05
Identities = 70/357 (19%), Positives = 125/357 (35%), Gaps = 43/357 (12%)
Query: 83 QSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGT 142
++ L S + FG+++ G + + GR+ M+ F G + A + +
Sbjct: 48 DAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIAR 107
Query: 143 VCMGLSVGCCEAPIISYIGEISEPRMRGSLS--LFAGAACNFGVFIIF---LIYALTD-W 196
+ +G+ +G +Y+ E +R S L +G A V ++ D W
Sbjct: 108 LVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGW 167
Query: 197 RTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQL 256
R IS + I + + IPE+ W +KH + +
Sbjct: 168 RALFFISILPIIFALWLRKNIPEA--------------------EDWKEKHAGKALVRTM 207
Query: 257 VKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPM 316
V +A+ T K V ++++++LF +Q +
Sbjct: 208 VDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFV-------YLVVLVLFANLYSHPIQDL 260
Query: 317 RPFLVEIFRTFGL-PMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFT 375
P ++ GL P ++V + I +I G V + LG+R + S
Sbjct: 261 LPTYLKA--DLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLI 318
Query: 376 LMLSICAMNLQWPGWIPLTIFCTCFWVSG-YGMLPLPWMLLSEVFPLQVRGIASGIT 431
+ + N+ G L +F V G +G+LP L E FP R G T
Sbjct: 319 IPVFAIGANVAVLG---LGLFFQQMLVQGIWGILP---KHLGEYFPTDQRAAGLGFT 369
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 43.4 bits (103), Expect = 2e-04
Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 5/169 (2%)
Query: 75 PDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAET 134
+ L Q W S L G+++ G + IGRKR++I+ F L + A
Sbjct: 43 QEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWD 102
Query: 135 VSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYAL- 193
+++ + G+ +G +I+ E PR+RG+ FG + +I L
Sbjct: 103 FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA 162
Query: 194 ---TDWRTTVLISAIFPILTM-IMIAFIPESPTWLVSKGRLEEAERSLR 238
WR + + P+L + +++ ++PES + + G ++ LR
Sbjct: 163 AGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLR 211
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 40.7 bits (95), Expect = 0.001
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 10/159 (6%)
Query: 76 DLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETV 135
DL L+D + ++L + F+ PFG + G + GRK LM+ + +G L LA V
Sbjct: 47 DLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGV 106
Query: 136 SIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTD 195
++ L +G+ + A +Y E ++ S F FG+ I Y +
Sbjct: 107 IMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAF--LVSGFGIGNIIAAYFMPS 164
Query: 196 ------WRTTVLISAIFPILTMIMI-AFIPESPTWLVSK 227
WR + + P+L +I I A PES W +K
Sbjct: 165 FAEAYGWRAAFFV-GLLPVLLVIYIRARAPESKEWEEAK 202
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 35.3 bits (82), Expect = 0.072
Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 20/167 (11%)
Query: 92 FLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSII--------MLGTV 143
FL P G+I+ G+F + IGRK+ +++ +G +L+ L + + I +L +
Sbjct: 45 FLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARL 104
Query: 144 CMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFI-----IFLIYALTD--- 195
G S+G Y+ E + P RG F G+ + + L Y L D
Sbjct: 105 IQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDAL 164
Query: 196 ----WRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLR 238
WR L+SA+ ++ + + + E+P + ++ + ++ +
Sbjct: 165 LEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIA 211
Score = 28.8 bits (65), Expect = 6.9
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 4/99 (4%)
Query: 77 LILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGF-PFFLGWILLYLAETV 135
L LS + + + + +SG + IGR+ ++I+ L LL
Sbjct: 250 LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDS 309
Query: 136 SIIML---GTVCMGLSVGCCEAPIISYIGEISEPRMRGS 171
L + M L G P+ S++ E+ +R +
Sbjct: 310 GSFTLFFFLVLGMALIGGMYTGPMGSFLPELFPTEVRYT 348
>gnl|CDD|182163 PRK09952, PRK09952, shikimate transporter; Provisional.
Length = 438
Score = 35.1 bits (81), Expect = 0.092
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 16/56 (28%)
Query: 92 FLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGL 147
FLF P G ++ G+F + +GRKR+++L TV ++ + T +GL
Sbjct: 74 FLFRPLGGVVFGHFGDRLGRKRMLML----------------TVWMMGIATALIGL 113
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 35.0 bits (81), Expect = 0.100
Identities = 30/182 (16%), Positives = 69/182 (37%), Gaps = 18/182 (9%)
Query: 43 LLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIIS 102
LL SL +G T + +L + + + + L+ ++S + F + S+ +
Sbjct: 17 LLTSLFFLWGFITCLNDIL---IPHLKEVFD-----LTYFEASLIQFAFFGGYFIMSLPA 68
Query: 103 GYFLEYIGRKRLMILVGFPFFLGWILLYLA---ETVSIIMLGTVCMGLSVGCCEAPIISY 159
G ++ +G K ++L + +G L + A ++ ++ + +G E Y
Sbjct: 69 GLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPY 128
Query: 160 IGEISEP-----RMRGSLSLFAGAACNFGVFIIFLIYALTDWRTTVLISAIFPILTMIMI 214
+ + +P R+ + + A + LI L+ T+ + I I
Sbjct: 129 VTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLI--LSGVALTMSAAQILAIKGADAS 186
Query: 215 AF 216
+
Sbjct: 187 SV 188
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 34.5 bits (80), Expect = 0.14
Identities = 67/416 (16%), Positives = 128/416 (30%), Gaps = 95/416 (22%)
Query: 110 GRKRLMILVG-FPFFLGWILLYLA----ETVSIIMLGTVCMGLSVG--CCEAPIISYIGE 162
GR R +L G PF + +LL++ T +I M L +G P + E
Sbjct: 80 GRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPE 139
Query: 163 I-SEPRMRGSLSLFAGAACNFGVFIIFLIYALTDWRTTVLISAIFP-------ILTMIMI 214
I +P+ R SL+ + + G ++ ++ L+ T +++
Sbjct: 140 ITQDPQERASLTSWRMVFASLGGLLVAVL-------FPPLVKLFGGGDKALGYQGTALVL 192
Query: 215 AFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTT 274
I V+ RV Q K L
Sbjct: 193 GVIGVILLLF-----------CFFNVK-------ERVVETQPTKTGVKLKL--------- 225
Query: 275 DQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPMK-- 332
K S L N RP ++++++ + IA +V + T+ L
Sbjct: 226 ---KDSFLLIFKN--------RPLLLLLLMNLLLFIAF-NIRGSIMV-YYVTYVLGDPEL 272
Query: 333 -SEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGW- 390
+ +L+ +G + G + V K GK+ + L + + P
Sbjct: 273 FAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAV------GYLLLYFTPAGS 326
Query: 391 IPLTIFCTCFWVSGYGML-PLPWMLLSEV----------------FPLQV------RGIA 427
+ L + G G+ PLPW ++++ + +A
Sbjct: 327 VVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALA 386
Query: 428 SGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDR 483
I + ++ + + ++ FG+ I + L I F+ E
Sbjct: 387 GFIPGWILGAIGYVPNVSAQSASALFGIRFLFIILPALLLLLAAIIIFFYKLNEKM 442
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 33.1 bits (76), Expect = 0.32
Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 4/149 (2%)
Query: 79 LSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSII 138
L+ Q++ L S F+ FG ++ G + GR+ M++ F +G + A +
Sbjct: 52 LTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTL 111
Query: 139 MLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALT---- 194
+ + +G+ + +Y+ E +R S F + + G + +Y+L
Sbjct: 112 FIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW 171
Query: 195 DWRTTVLISAIFPILTMIMIAFIPESPTW 223
WR I + I + + +PE+ W
Sbjct: 172 GWRALFFIGILPIIFALWLRKNLPEAEDW 200
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 32.8 bits (75), Expect = 0.41
Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 12/146 (8%)
Query: 77 LILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILV-GFPFFLGWILLYLAETV 135
L LSD SI +F+ G G + IGR++ M +V G +L++
Sbjct: 235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLN 294
Query: 136 SIIMLGTVCMGLSVGCCEAPIIS--------YIGEISEPRMRGSLSLFAGAACNFGVFII 187
++ L TV + V IS G + G L A FG I
Sbjct: 295 DVLFLATVAL---VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIA 351
Query: 188 FLIYALTDWRTTVLISAIFPILTMIM 213
+ T +++ F + ++ +
Sbjct: 352 SHALTEIGFEYTFIVTGAFALTSLAL 377
>gnl|CDD|111933 pfam03092, BT1, BT1 family. Members of this family are
transmembrane proteins. Several are Leishmania putative
proteins that are thought to be pteridine transporters.
One such protein, previously termed (and is still
annotated as) ORFG, was shown to encode a biopterin
transport protein using null mutants, thus being
subsequently renamed BT1. The significant similarity of
ORFG/BT1 to Trypanosoma brucei ESAG10 (a putative
transmembrane protein and another member of this family)
was previously noted. This family also contains five
putative Arabidopsis thaliana proteins of unknown
function. In addition, it also contains two predicted
prokaryotic proteins (from the cyanobacteria
Synechocystis and Synechococcus).
Length = 425
Score = 32.3 bits (74), Expect = 0.66
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 13/138 (9%)
Query: 96 PFGSIISG--YFLEYIGRKRLMI--LVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGC 151
PF ++S Y R L + L+G F L + LL A+ S + S+G
Sbjct: 42 PFTGVLSDGFALFGYRRRPYLALSGLLGGAFALSYGLL-PAKESSAAVAAAFIFLSSLGK 100
Query: 152 CEAPIIS---YIGEI-SEPRMRGSLSLFAGAACNFGVFIIFLIY-ALTDW---RTTVLIS 203
++S Y EP SL + G I ++ L D + + L++
Sbjct: 101 ALVDVLSDALYSERGRQEPLAGPSLVSWIWGCSAVGGIIGSVLSGPLLDTFKPQISFLVT 160
Query: 204 AIFPILTMIMIAFIPESP 221
A +LT + A + E
Sbjct: 161 AALQLLTCVDAAVLKEEE 178
>gnl|CDD|129888 TIGR00806, rfc, RFC reduced folate carrier. The Reduced Folate
Carrier (RFC) Family (TC 2.A.48) Members of the RFC
family mediate the uptake of folate, reduce folate,
derivatives of reduced folate and the drug,
methotrexate. Proteins of the RFC family are so-far
restricted to animals. RFC proteins possess 12 putative
transmembrane a-helical spanners (TMSs) and evidence for
a 12 TMS topology has been published for the human RFC.
The RFC transporters appear to transport reduced folate
by an energy-dependent, pH-dependent, Na+-independent
mechanism. Folate:H+ symport, folate:OH- antiport and
folate:anion antiport mechanisms have been proposed, but
the energetic mechanism is not well defined [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 511
Score = 31.0 bits (70), Expect = 1.6
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Query: 107 EYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEP 166
+Y+ K +++L F W+LL L +V + L V +++ SYI + P
Sbjct: 87 DYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMA-ARIAYSSYIFSLVPP 145
Query: 167 RMRGSLSLFAGAACNFGVFIIFLIYAL------TDWRTTVLISAIFPILTMIMIAFIP 218
+ ++ AA GVF+ ++ L + T +IS +F ++ + F+
Sbjct: 146 SRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLK 203
>gnl|CDD|182309 PRK10213, nepI, ribonucleoside transporter; Reviewed.
Length = 394
Score = 30.3 bits (68), Expect = 2.9
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 12/126 (9%)
Query: 97 FGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPI 156
F S+ ++ R+ ++IL L +L+ A + S++++G C+GL++G A
Sbjct: 70 FASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMS 129
Query: 157 ISYIGEISEPR-MRGSLSLFAGA-------ACNFGVFIIFLIYALTDWRTTVLISAIFPI 208
S + PR + +LS+ GA A G F+ LI WR +A+ +
Sbjct: 130 ASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI----GWRNVFNAAAVMGV 185
Query: 209 LTMIMI 214
L + I
Sbjct: 186 LCIFWI 191
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 30.1 bits (68), Expect = 3.2
Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 11/137 (8%)
Query: 346 TGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGY 405
G + I V L + + WS GI F + ++SI + W + + C + G
Sbjct: 87 YGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIV---IPWAAGGGIALVVFCRVIQGL 143
Query: 406 G---MLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTK-TYINLTSWFGLHGTLFI 461
+ P ++ + P + R G++ + + FI + SW G ++
Sbjct: 144 AQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYV 203
Query: 462 YTLV----SFLGFIYIY 474
+ +V S L F++
Sbjct: 204 FGIVGCAWSLLWFVFPA 220
>gnl|CDD|224189 COG1270, CbiB, Cobalamin biosynthesis protein CobD/CbiB [Coenzyme
metabolism].
Length = 320
Score = 29.6 bits (67), Expect = 3.7
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 25/74 (33%)
Query: 93 LFHP---FGSIISGYFLEYIGRKR-------------LMILVGFPFFLGWILLYLAET-- 134
L HP G +I+ FLE I +R ++LV L W+L Y+A
Sbjct: 25 LPHPVVWIGKLIA--FLEKIWNRRVAKASRRLAGALAWLVLVLITALLAWLLAYVAYIPP 82
Query: 135 -----VSIIMLGTV 143
+ +++L T
Sbjct: 83 PLGFLIEVLLLKTT 96
>gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter;
Provisional.
Length = 490
Score = 29.7 bits (67), Expect = 3.8
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 20/127 (15%)
Query: 89 SILFLFHPFGSIISGYFLEYIGRKRLM-----ILVGFPFFLGWILLYLAETVSI-----I 138
S+ FL P G + G + GR++++ I+ F +G I Y T+ I +
Sbjct: 64 SVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSY--ATIGIWAPILL 121
Query: 139 MLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYALTDWRT 198
+L + G SVG ++ E S R RG F G+ +FG F++ A
Sbjct: 122 LLCKMAQGFSVGGEYTGASIFVAEYSPDRKRG----FMGSWLDFGSIAGFVLGA----GV 173
Query: 199 TVLISAI 205
VLIS I
Sbjct: 174 VVLISTI 180
>gnl|CDD|130170 TIGR01100, V_ATP_synt_C, vacuolar ATP synthase 16 kDa proteolipid
subunit. This model describes the vacuolar ATP synthase
16 kDa proteolipid subunit in eukaryotes and includes
members from diverse groups e.g., fungi, plants,
parasites etc. The principal role V-ATPases are the
acidification of intracellular compartments of
eukaryotic cells [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 108
Score = 28.1 bits (63), Expect = 4.0
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 310 IASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKL 358
IA++ MRP L+ MKS +V+ GI++I G V+ + L
Sbjct: 29 IAAMGVMRPELI---------MKSIIPVVMAGIIAIYGLVVAVLIAGSL 68
>gnl|CDD|234230 TIGR03491, TIGR03491, RecB family nuclease, putative, TM0106
family. Members of this uncharacterized protein family
are found broadly but sporadically among bacteria. The
N-terminal region is homologous to the Cas4 protein of
CRISPR systems, although this protein family shows no
signs of association with CRISPR repeats.
Length = 457
Score = 29.6 bits (67), Expect = 4.3
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 1 MDEHNSSSQKEILSEAEKEKVNVRYGFRSACSQFTASVAQNFLLFSLGMAFGMPTVVVGV 60
+D + QKE + + + F + A+ A+ L A G + G
Sbjct: 18 LDLYGDKQQKEAPPDFLLQLRQDKQAFVQLILEDPAARAEAGLD---ACAAGADGIYGGR 74
Query: 61 LDHKVASNQTILESPDLILSDE-QSSW 86
L H + N + PDL++ D +S+W
Sbjct: 75 LKHDLPQNLPHVSHPDLLVKDPGRSAW 101
>gnl|CDD|177979 PLN02345, PLN02345, endoglucanase.
Length = 469
Score = 29.3 bits (66), Expect = 4.8
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 21/75 (28%)
Query: 212 IMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSK-KHKVRVEFEQLVKDTNSATLYVADS 270
+M +P+SPT + R + L WV W+ +H V NSA L V S
Sbjct: 286 VMCGLLPDSPT--ATTSR---TDGGLIWVSEWNALQHAV-----------NSAFLAVLYS 329
Query: 271 EYTTDQRKSSQLSKL 285
+Y SS ++KL
Sbjct: 330 DYML----SSGIAKL 340
>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport
and metabolism].
Length = 498
Score = 29.2 bits (66), Expect = 5.7
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 93 LFHPFGS------IISGYFLE-YIGRKRLMILVGFPFFLGWILLYLAETVSIIML--GTV 143
LF +GS II G+ + +G +R ++L +G ++L ++ L G
Sbjct: 66 LFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLA 125
Query: 144 CMGLSVGCCEAPIISYIGEI---SEPRMRGSLSLFAGAACNFGVFI 186
+ + G + I S +GE+ +PR G +LF N G I
Sbjct: 126 LIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFY-MGINIGSLI 170
>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.
Length = 432
Score = 29.0 bits (65), Expect = 5.8
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 356 NKLGKRGMTLWSTGINTFFTLMLSICAMNLQWP----GWIPLTIFCTCFWVSGYGMLPLP 411
+K+G+R L + FT+ + N+ P G + + F+ S G+L
Sbjct: 304 DKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILK-- 361
Query: 412 WMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLT-SWFGLHGTLFIY-TLVSFLG 469
+E+FP QVR + G++ A ++ + F + Y+ L+ G+ F Y TL++ +
Sbjct: 362 ----AEMFPAQVRALGVGLSYAVANAL-FGGSAEYVALSLKSIGMETAFFWYVTLMAVVA 416
Query: 470 FI 471
F+
Sbjct: 417 FL 418
>gnl|CDD|234919 PRK01209, cobD, cobalamin biosynthesis protein; Provisional.
Length = 312
Score = 29.0 bits (66), Expect = 6.2
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 16/54 (29%)
Query: 93 LFHP---FGSIISGYFLEYIGRKR-----------LMILVGFPFFLGWILLYLA 132
HP FG +IS LE R+ +++VG L W+LL LA
Sbjct: 24 WPHPVVGFGRLIS--RLERRLRRGCRGLRIAGVLAWLVVVGPSGLLAWLLLALA 75
>gnl|CDD|217412 pfam03186, CobD_Cbib, CobD/Cbib protein. This family includes CobD
proteins from a number of bacteria, in Salmonella this
protein is called Cbib. Salmonella CobD is a different
protein. This protein is involved in cobalamin
biosynthesis and is probably an enzyme responsible for
the conversion of adenosylcobyric acid to
adenosylcobinamide or adenosylcobinamide phosphate.
Length = 295
Score = 28.6 bits (65), Expect = 6.7
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 16/54 (29%)
Query: 93 LFHP---FGSIISGYFLEYIGRKR-----------LMILVGFPFFLGWILLYLA 132
L HP G +IS +LE + ++LV LG +LL LA
Sbjct: 20 LPHPVVWIGRLIS--WLERRLNRGSAARRLAGALLWLLLVLPAALLGALLLALA 71
>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta
subunit (SR-beta), together with SR-alpha, forms the
heterodimeric signal recognition particle (SRP). Signal
recognition particle receptor, beta subunit (SR-beta).
SR-beta and SR-alpha form the heterodimeric signal
recognition particle (SRP or SR) receptor that binds SRP
to regulate protein translocation across the ER
membrane. Nascent polypeptide chains are synthesized
with an N-terminal hydrophobic signal sequence that
binds SRP54, a component of the SRP. SRP directs
targeting of the ribosome-nascent chain complex (RNC) to
the ER membrane via interaction with the SR, which is
localized to the ER membrane. The RNC is then
transferred to the protein-conducting channel, or
translocon, which facilitates polypeptide translation
across the ER membrane or integration into the ER
membrane. SR-beta is found only in eukaryotes; it is
believed to control the release of the signal sequence
from SRP54 upon binding of the ribosome to the
translocon. High expression of SR-beta has been observed
in human colon cancer, suggesting it may play a role in
the development of this type of cancer.
Length = 202
Score = 28.4 bits (64), Expect = 7.5
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 248 KVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLL-NYLVRPEIVRPFIMIMIL 304
K+R + + +K + A ++V DS T Q+ +++ L + L E ++ I I+I
Sbjct: 59 KLRDKLLEYLKASLKAIVFVVDS--ATFQKNIRDVAEFLYDILTDLEKIKNKIPILIA 114
>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter
(Peptide:H+ symporter), bacterial. The model describes
proton-dependent oligopeptide transporters in bacteria.
This model is restricted in its range in recognizing
bacterial proton-dependent oligopeptide transporters,
although they are found in yeast, plants and animals.
They function by proton symport in a 1:1 stoichiometry,
which is variable in different species. All of them are
predicted to contain 12 transmembrane domains, for which
limited experimental evidence exists [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 475
Score = 28.6 bits (64), Expect = 7.9
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 99 SIISGYFLEYI-GRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPII 157
+ + +F + + G K+ M+L G LG +L ++ +I G + + G +A
Sbjct: 65 TSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPS 124
Query: 158 SYIGEISE----PRMRGSLSLFAGAACNFGVFI 186
S +G++ E PR G +LF + N G FI
Sbjct: 125 SMVGKLYERGDMPRRDGGFTLFY-MSINIGSFI 156
>gnl|CDD|147012 pfam04647, AgrB, Accessory gene regulator B. The arg locus
consists of two transcripts: RNAII and RNAIII. RNAII
encodes four genes (agrA, B, C, and D) whose gene
products assemble a quorum sensing system. AgrB and AgrD
are essential for the production of the autoinducing
peptide which functions as a signal for quorum sensing.
AgrB is a transmembrane protein.
Length = 185
Score = 27.9 bits (63), Expect = 9.2
Identities = 15/103 (14%), Positives = 37/103 (35%), Gaps = 5/103 (4%)
Query: 114 LMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLS 173
L++ V P + I L I + + L + AP + I+ +R L
Sbjct: 84 LILFVLIPLLIKLISLNN-----YIAIILFIISLIIIYKYAPADTPKKPITNEELRKKLK 138
Query: 174 LFAGAACNFGVFIIFLIYALTDWRTTVLISAIFPILTMIMIAF 216
+ + + I ++ +++ + +T++ I +
Sbjct: 139 IKSIIVLLILLVISLILSENYFILLLIVLGILLQSITLLPIGY 181
>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter. This model
represents a subgroup of the more broadly defined model
TIGR00890, which in turn belongs to the Major
Facilitator transporter family. Seed members for this
family include the known oxalate/formate antiporter of
Oxalobacter formigenes, as well as transporter subunits
co-clustered with the two genes of a system that
decarboxylates oxalate into formate. In many of these
cassettes, two subunits are found rather than one,
suggesting the antiporter is sometimes homodimeric,
sometimes heterodimeric.
Length = 405
Score = 28.6 bits (64), Expect = 9.8
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 101 ISGYFLEYIGRKRLMILVGFPFF-LGWILLYLAETVSIIMLGTVCMGLSVGC 151
I G+F++ G R++++ G LGW+L A+++ + V G+ G
Sbjct: 57 IEGWFVDKYG-PRIVVMFGGIMCGLGWVLNAYADSLPALYAAAVVAGIGAGA 107
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. A number of family
members are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 440
Score = 28.3 bits (64), Expect = 10.0
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 14/79 (17%)
Query: 300 MIMILFFITIIASLQ----PMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITV 355
++ FI ++ LQ P+ + ++R P W+LV L +TG + T+
Sbjct: 364 YAYVVLFI-SVSVLQGLKRPIFALWIGLYRQLVGPALVFWLLVNVLGLGVTGIWWGIFTI 422
Query: 356 NKLGKRGMTLWSTGINTFF 374
WS I
Sbjct: 423 V---------WSAAIIALL 432
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.140 0.432
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,360,976
Number of extensions: 2652311
Number of successful extensions: 5287
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5157
Number of HSP's successfully gapped: 312
Length of query: 513
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 412
Effective length of database: 6,457,848
Effective search space: 2660633376
Effective search space used: 2660633376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.2 bits)