RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8366
         (513 letters)



>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
           symport, sugar transport, transmembrane, formylation;
           2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
           1pv6_A 2cfp_A 2v8n_A 2y5y_A*
          Length = 417

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 15/123 (12%), Positives = 38/123 (30%), Gaps = 5/123 (4%)

Query: 100 IISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISY 159
             +   +  IG K  ++L G    +  I    A +   +++        V         Y
Sbjct: 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336

Query: 160 IGEISEPRMRGSL-SLFAGAACNFGVFIIFLI----YALTDWRTTVLISAIFPILTMIMI 214
           I    E R   ++  +         +  + ++    Y    ++   L+  +  +   ++ 
Sbjct: 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLIS 396

Query: 215 AFI 217
            F 
Sbjct: 397 VFT 399


>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
           transport protein; HET: BNG; 3.14A {Escherichia coli}
           PDB: 3o7p_A*
          Length = 438

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 11/154 (7%)

Query: 42  FLLFSLGMAFGMPTVVVGVLDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSII 101
            LL SL   + +   +  +L  +              L++ Q+  + S  +  +    I 
Sbjct: 29  ALLCSLFFLWAVANNLNDILLPQFQQ--------AFTLTNFQAGLIQSAFYFGYFIIPIP 80

Query: 102 SGYFLEYIGRKRLMILVGFPFFLGWILLYLA---ETVSIIMLGTVCMGLSVGCCEAPIIS 158
           +G  ++ +  K  +I   F + LG  L + A      ++ ++G   +   +GC E     
Sbjct: 81  AGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANP 140

Query: 159 YIGEISEPRMRGSLSLFAGAACNFGVFIIFLIYA 192
           ++  +            A    +FG  I  +   
Sbjct: 141 FVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 51/295 (17%), Positives = 92/295 (31%), Gaps = 93/295 (31%)

Query: 218 PESPTWLVSK------GRLEEAERS-----LRWVRGWSKKHKVRVEFEQLV---KDTNS- 262
           P +P  LV K        +E ++       L              EFE       D ++ 
Sbjct: 54  PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN---------LCLTEFENCYLEGNDIHAL 104

Query: 263 -ATLYVADSEYTTDQRKSSQLSKLLNYL-VRPEIVRPFIMIM--ILF------FITIIAS 312
            A L     E  T   K+ +L  + NY+  R    RPF       LF         ++A 
Sbjct: 105 AAKL---LQENDTTLVKTKEL--IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159

Query: 313 L--Q--PMRPF--LVEIFRTFGLPMKSEWVLVLTGILSITGSFV-STITVNKLGKRGMTL 365
              Q      F  L ++++T+   +  + +      LS     + +T+   K+  +G+ +
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYH-VLVGDLIKFSAETLS---ELIRTTLDAEKVFTQGLNI 215

Query: 366 --WSTGINTF----FTLMLSICAMNLQWPGWIPLTIFC----TCFWVSGYGMLPLPWMLL 415
             W    +      +   L      +  P  I +        T   + G+          
Sbjct: 216 LEWLENPSNTPDKDY---LLSIP--ISCPL-IGVIQLAHYVVTA-KLLGFT--------- 259

Query: 416 SEVFPLQVRGIASGITAASSSVV------------NFI-STKTYINLTSWFGLHG 457
               P ++R    G T  S  +V            +F  S +  I +  + G+  
Sbjct: 260 ----PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310



 Score = 40.0 bits (93), Expect = 0.002
 Identities = 49/304 (16%), Positives = 95/304 (31%), Gaps = 105/304 (34%)

Query: 211  MIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVR-------VEFE----QLVKD 259
            M M      S     ++     A+   +   G+S    V        + F     + +++
Sbjct: 1631 MGM-DLYKTSK---AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686

Query: 260  TNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMI-----LFFITIIASLQ 314
              SA ++    E   D +  ++  K+       EI              L   T     Q
Sbjct: 1687 NYSAMIF----ETIVDGKLKTE--KIF-----KEINEHSTSYTFRSEKGLLSATQFT--Q 1733

Query: 315  P-MRPFLVE--IFRTFGLPMKSEWV-----------------LV-LTGILSITGSFVSTI 353
            P +   L+E   F      +KS+ +                 L  L  ++    S  S +
Sbjct: 1734 PAL--TLMEKAAFED----LKSKGLIPADATFAGHSLGEYAALASLADVM----SIESLV 1783

Query: 354  TVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWM 413
             V  +  RGMT+                A+     G             S YGM+ +   
Sbjct: 1784 EV--VFYRGMTMQV--------------AVPRDELG------------RSNYGMIAINPG 1815

Query: 414  LLSEVFPLQ-VRGIASGITAASS---SVVNF-ISTKTYINLTSWFGLHGTLF-IYTLVSF 467
             ++  F  + ++ +   +   +     +VN+ +  + Y+   +     G L  + T+ + 
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV--AA-----GDLRALDTVTNV 1868

Query: 468  LGFI 471
            L FI
Sbjct: 1869 LNFI 1872



 Score = 37.3 bits (86), Expect = 0.014
 Identities = 60/338 (17%), Positives = 103/338 (30%), Gaps = 93/338 (27%)

Query: 1    MDEHNSS-SQKEILSEAEKEKVNVRYGFRSACSQFTASVAQNFLLFSLGMAFGMPTVVVG 59
            MD + +S + +++ + A+    +  YGF          V  N +  +L + FG      G
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKD-TYGFS-----ILDIVINNPV--NLTIHFG------G 1678

Query: 60   VLDHKVASNQTIL---ESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMI 116
                ++  N + +      D  L  E+         +F       + Y       K L+ 
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEK---------IFKEINEHSTSYTFR--SEKGLLS 1727

Query: 117  LVGF--P--FFLGWILLYLAETVSIIMLGTVCMGLSVG-----CCEAPIISYIGEISEP- 166
               F  P    +        ++  +I       G S+G        A ++S    I    
Sbjct: 1728 ATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMS----IESLV 1783

Query: 167  ---RMRGSLSLFAGAACNFGVFIIFLIYALTDWRTTVLISAIFPILTMIMIAFIPESPTW 223
                 RG     A      G             R+              MIA  P     
Sbjct: 1784 EVVFYRGMTMQVAVPRDELG-------------RSNYG-----------MIAINPGR--- 1816

Query: 224  LVSKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATL-YVADSEYTTDQRKSSQL 282
             V+    +EA + +  V    K+    VE   +V   N     YVA      D R    +
Sbjct: 1817 -VAASFSQEALQYV--VERVGKRTGWLVE---IVNY-NVENQQYVA----AGDLRALDTV 1865

Query: 283  SKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFL 320
            + +LN++   +I    I +          SL+ +   L
Sbjct: 1866 TNVLNFIKLQKI--DIIELQKSL------SLEEVEGHL 1895



 Score = 33.1 bits (75), Expect = 0.28
 Identities = 52/361 (14%), Positives = 95/361 (26%), Gaps = 151/361 (41%)

Query: 2   DEHNSSSQKEILSEAEKEKVNVRY-GF-RSACSQFTASVAQNFLLFSLGMAFGMPTVVVG 59
           DE   ++  E++          ++ G+  S             L   L   F      + 
Sbjct: 52  DE--PTTPAELVG---------KFLGYVSSLVEPSKVGQFDQVLNLCLT-EFE--NCYLE 97

Query: 60  VLD-HKVASN------QTILESPDLILS---------DEQSSWLGSILF---------LF 94
             D H +A+        T++++ +LI +                 S LF         L 
Sbjct: 98  GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157

Query: 95  HPFG--SIISGYFLE-------Y-------IGR--KRLMILV------------GFPFFL 124
             FG       YF E       Y       I    + L  L+            G    L
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI-L 216

Query: 125 GWI--------LLYLAE-TVSIIMLG--------TVC--MGLSVGCCEAPIISYIGEISE 165
            W+          YL    +S  ++G             +G +      P     GE+  
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT------P-----GELR- 264

Query: 166 PRMRGSLSLFAGAACNFGVFIIFLIYALTDWRTTVLISAIFPILTMIMIAFIPESPTWLV 225
             ++G+     G                       L++A            I E+ +W  
Sbjct: 265 SYLKGATGHSQG-----------------------LVTA----------VAIAETDSW-- 289

Query: 226 SKGRLEEAERSLR---WVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQL 282
            +       +++    ++ G            +   +T+     + DS    +   S  L
Sbjct: 290 -ESFFVSVRKAITVLFFI-GV--------RCYEAYPNTSLPPSILEDSLENNEGVPSPML 339

Query: 283 S 283
           S
Sbjct: 340 S 340


>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
           major facilitator superfamily, secondary active membrane
           transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
          Length = 451

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 57/433 (13%), Positives = 125/433 (28%), Gaps = 73/433 (16%)

Query: 76  DLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLM-----------ILVGFPFFL 124
           +   S     +  S + + + F   I G   +    +  +           + +GF  + 
Sbjct: 56  EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA 115

Query: 125 GWILLYLAETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGV 184
              +  +     +++      G   G    P    +      + RG +      A N G 
Sbjct: 116 TSSIAVMF----VLL---FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG 168

Query: 185 FII-----FLIYALTDWRTTVLISAIFPILTMIMIAFI----PESPTWLVSKGRLEEAER 235
            I        +    DW   + + A   IL  +    +    P+S   L      +    
Sbjct: 169 GIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC-GLPPIEEYKNDYP 227

Query: 236 SLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIV 295
                +   +    ++  + ++   N    Y+A                         I 
Sbjct: 228 DDYNEKAEQELTAKQIFMQYVLP--NKLLWYIA-------------------------IA 260

Query: 296 RPFIMIMILFFITIIASLQPMRPFLVEIFRTFGLPM-KSEWVLVLTGILSITGSFVSTIT 354
             F+ ++    +    +      +L E        + KS W   L     I G+ +    
Sbjct: 261 NVFVYLLRYGILDWSPT------YLKE---VKHFALDKSSWAYFLYEYAGIPGTLLCGWM 311

Query: 355 VNKLGKRG---MTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLP 411
            +K+ +       ++   + T  T++  +          I + +         YG + L 
Sbjct: 312 SDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFL----IYGPVMLI 367

Query: 412 WMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYI-NLTSWFGLHGTLFIYTLVSFLGF 470
            +   E+ P +  G A+G T     +   ++    +     +FG  G   +    S L  
Sbjct: 368 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV 427

Query: 471 IYIYFYVPETEDR 483
           I +   +   + R
Sbjct: 428 ILLIVVMIGEKRR 440


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 34.8 bits (79), Expect = 0.088
 Identities = 55/368 (14%), Positives = 107/368 (29%), Gaps = 118/368 (32%)

Query: 222 TWLV-----SKGRLEEAERSLRWVRGWSKKHKVRVEFEQLVKDTNSATLYVADSEYTTDQ 276
           TW+      S     + +  + W+      +      E L        L      Y  D 
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETVLEMLQ------KLL-----YQIDP 211

Query: 277 RKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIASLQPMRPFLV-------EIFRTFGL 329
             +S+     N  +R   ++  +         ++ S       LV       + +  F L
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELR-------RLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 330 PMKSEWVLVLTGILSIT----GSFVSTITVNKLGKRGMT------LWSTGINTFFT---- 375
             K   +L+ T    +T     +  + I+++      +T      L    ++        
Sbjct: 265 SCK---ILLTTRFKQVTDFLSAATTTHISLDHHSM-TLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 376 -------LMLSICAMNLQ-----WPGW-----------I--------P---------LTI 395
                    LSI A +++     W  W           I        P         L++
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 396 FCTCFWVSGYGMLPLPWMLLSEVFP------LQVRGIASGITAASSSVVNFISTKTYINL 449
           F     +    +L L W  + +         L    +       S+  +  I  +  + L
Sbjct: 381 FPPSAHIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439

Query: 450 TSWFGLHGTLFI--YTLVSFL---GFI------YIYFYVP------ETEDRT--LQEI-L 489
            + + LH ++ +  Y +         I      Y Y ++       E  +R    + + L
Sbjct: 440 ENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498

Query: 490 DF-FAENK 496
           DF F E K
Sbjct: 499 DFRFLEQK 506



 Score = 31.7 bits (71), Expect = 0.70
 Identities = 51/348 (14%), Positives = 98/348 (28%), Gaps = 106/348 (30%)

Query: 217 IPESPTWLVSKGRLEE-------AERSLRWVRGW---SKKHKVRVEFEQLVKDTNSATLY 266
           + + P  ++SK  ++           +LR    W   SK+ ++  +F + V   N   L 
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRLF--WTLLSKQEEMVQKFVEEVLRINYKFLM 95

Query: 267 VADSEYTTDQRK--------SSQLSKLLN-------YLV-RPEIVRPFIMIMILFFITII 310
              S   T+QR+          Q  +L N       Y V R +             + + 
Sbjct: 96  ---SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY-----------LKLR 141

Query: 311 ASLQPMRP--FLVEIFRTFGLPM----KSEWVLVLTGILS--ITGSF---VSTITVNKLG 359
            +L  +RP   ++      G  +    K+   + L   LS  +       +  + +    
Sbjct: 142 QALLELRPAKNVL----IDG--VLGSGKT--WVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 360 KRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGML-PLPWMLL--- 415
                L    +      +             I L I      +       P    LL   
Sbjct: 194 SPETVL--EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 416 ----SEV---FPLQVRGIASGITAASSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFL 468
               ++    F L  + +   +T     V +F+S  T  ++             +L    
Sbjct: 252 NVQNAKAWNAFNLSCKIL---LTTRFKQVTDFLSAATTTHI-------------SLDHHS 295

Query: 469 -GFIYIYFYVPETEDRTLQEILDFFAE--NKSARDFKRPSKSKQPLTC 513
                       T D    E+     +  +   +D  R   +  P   
Sbjct: 296 MTL---------TPD----EVKSLLLKYLDCRPQDLPREVLTTNPRRL 330



 Score = 28.3 bits (62), Expect = 7.9
 Identities = 26/198 (13%), Positives = 60/198 (30%), Gaps = 70/198 (35%)

Query: 61  LDHKVASNQTILESPDLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGR-----KRLM 115
           L+++ A +++I++  ++  + +                  +  YF  +IG      +   
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSD----------DLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 116 ILVGFP--FF-LGWILLYLAETVSIIMLGTVCMGLSVGCCEAPIIS----------YIGE 162
            +  F   F    ++         I    T             I++          YI +
Sbjct: 489 RMTLFRMVFLDFRFL------EQKIRHDSTAW------NASGSILNTLQQLKFYKPYICD 536

Query: 163 ISEP---RMRGSLSLFAGAACNFGVFIIFLIYALTDWRTTVLISAIFPILTMIMIAFIPE 219
            ++P   R+  ++             + FL           LI +      ++ IA + E
Sbjct: 537 -NDPKYERLVNAI-------------LDFLPKI-----EENLICS--KYTDLLRIALMAE 575

Query: 220 SPTWLVSKGRLEEAERSL 237
                  +   EEA + +
Sbjct: 576 ------DEAIFEEAHKQV 587


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.1 bits (69), Expect = 0.40
 Identities = 8/19 (42%), Positives = 9/19 (47%)

Query: 252 EFEQLVKDTNSATLYVADS 270
           E + L K   S  LY  DS
Sbjct: 18  EKQALKKLQASLKLYADDS 36


>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
           channel, transport protein, casse protein; 2.00A {Homo
           sapiens} PDB: 2onj_A* 2hyd_A
          Length = 578

 Score = 28.7 bits (65), Expect = 5.2
 Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 427 ASGITAASSSVVNFISTKTYINLTSWFG----LHGTLFIYTLVSFLGFIYIYF 475
            +   A S + +N ++    I +    G    + G++ + TL +F+G++ + F
Sbjct: 240 HTRWNAYSFAAINTVTDIGPI-IVIGVGAYLAISGSITVGTLAAFVGYLELLF 291


>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral
           membrane protein, prelami processing, ageing, progeria;
           HET: PC1; 3.40A {Homo sapiens}
          Length = 482

 Score = 28.3 bits (62), Expect = 6.4
 Identities = 17/144 (11%), Positives = 40/144 (27%), Gaps = 12/144 (8%)

Query: 335 WVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGINTFFTLMLSICAMNLQWPGWIPLT 394
            +++L G +                  G   +        +L+  + A        +P +
Sbjct: 90  TLILLFGGIPYLWRLSGRFC-------GYAGFGPEYEITQSLVFLLLATLFSALAGLPWS 142

Query: 395 IFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGITAASSSVVNFISTKTYINLTSWFG 454
           ++ T      +G              ++       +T      V+ +          +F 
Sbjct: 143 LYNTFVIEEKHGFNQQTLGFF-----MKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFF 197

Query: 455 LHGTLFIYTLVSFLGFIYIYFYVP 478
           ++  LF   +   L  IY  +  P
Sbjct: 198 IYAWLFTLVVSLVLVTIYADYIAP 221


>2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II,
           amidohydrolase, sargasso SEA, enviro sample, structural
           genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9
          Length = 492

 Score = 28.4 bits (64), Expect = 6.9
 Identities = 6/41 (14%), Positives = 16/41 (39%), Gaps = 7/41 (17%)

Query: 211 MIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRV 251
           M  +   P +  + +S        R +R     +++  +R+
Sbjct: 212 MRRVVMAPTTVLYSIS-------PREMRETAAVARRLGLRM 245


>2cfa_A THYX, thymidylate synthase; FDTS, TSCP, flavin dependent
           thymidylate synthase FAD, flavoprotein, nucleotide
           biosynthesis; HET: CME FAD; 2.3A {Paramecium bursaria
           chlorella virus 1} PDB: 2cfa_B*
          Length = 217

 Score = 27.8 bits (62), Expect = 7.0
 Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 7/77 (9%)

Query: 248 KVRV-----EFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIM 302
             ++        + V        Y A      +Q  +   S LL Y +R +    F    
Sbjct: 2   SAKLISVTKPVVEGVNTAEELIAYAARVSNPENQINNKTASGLLKYCIRHKHWSIFETAF 61

Query: 303 ILFFI--TIIASLQPMR 317
           +   +  +   + Q +R
Sbjct: 62  MTLELKTSRGIAAQVLR 78


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.140    0.432 

Gapped
Lambda     K      H
   0.267   0.0457    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,655,238
Number of extensions: 453591
Number of successful extensions: 1409
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1405
Number of HSP's successfully gapped: 41
Length of query: 513
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 415
Effective length of database: 3,965,535
Effective search space: 1645697025
Effective search space used: 1645697025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.2 bits)