RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8366
         (513 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 72.0 bits (175), Expect = 4e-14
 Identities = 51/418 (12%), Positives = 124/418 (29%), Gaps = 33/418 (7%)

Query: 76  DLILSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYL---- 131
           +   S     +  S + + + F   I G   +    +  +           + +      
Sbjct: 53  EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA 112

Query: 132 AETVSIIMLGTVCMGLSVGCCEAPIISYIGEISEPRMRGSLSLFAGAACNFGVFIIFLIY 191
             +++++ +     G   G    P    +      + RG +      A N G  I  L++
Sbjct: 113 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 172

Query: 192 ALTDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHKVRV 251
            L        ++        + +         L +   + +  +S         K+    
Sbjct: 173 LLG-------MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD 225

Query: 252 EFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFITIIA 311
           ++ +                    +++ +     + Y++  +++    +  +  ++    
Sbjct: 226 DYNE------------------KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYG 267

Query: 312 SLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWSTGIN 371
            L     +L E+        KS W   L     I G+ +     +K+ +           
Sbjct: 268 ILDWSPTYLKEVK--HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFM 325

Query: 372 TFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIASGIT 431
           T  T+   +  MN      + +           YG + L  +   E+ P +  G A+G T
Sbjct: 326 TLVTIATIVYWMNPAGNPTVDMICMI-VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFT 384

Query: 432 AASSSVVNFISTKTYIN-LTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTLQEI 488
                +   ++    +     +FG  G   +    S L  I +   +   + R  Q +
Sbjct: 385 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLL 442


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 50.2 bits (118), Expect = 4e-07
 Identities = 35/418 (8%), Positives = 108/418 (25%), Gaps = 60/418 (14%)

Query: 79  LSDEQSSWLGSILFLFHPFGSIISGYFLEYIGRKRLMILVGFPFFLGWILLYLAETVSII 138
           +S   +  + + + LF      + G   + +G ++ ++ +     + +   ++     ++
Sbjct: 40  ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99

Query: 139 MLGTVCMGLSVGCCEAPIISYI----------GEISEPRMRGSLSLFAGAACNFGVFIIF 188
               +   +  G       +                     G   +F       G  I+ 
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG 159

Query: 189 LIYALTDWRTTVLISAIFPILTMIMIAFIPESPTWLVSKGRLEEAERSLRWVRGWSKKHK 248
           +++ + +     L S    IL +++     ++P+       +     +            
Sbjct: 160 IMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLAL----- 214

Query: 249 VRVEFEQLVKDTNSATLYVADSEYTTDQRKSSQLSKLLNYLVRPEIVRPFIMIMILFFIT 308
                                                     +P++    + ++ +    
Sbjct: 215 --------------------------------------ELFRQPKLWFLSLYVIGVSCTY 236

Query: 309 IIASLQPMRPFLVEIFRTFGLPMKSEWVLVLTGILSITGSFVSTITVNKLGKRGMTLWST 368
            +   Q    F               +V  +  +L+ +  F + + +N            
Sbjct: 237 DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN------RIGGKN 290

Query: 369 GINTFFTLMLSICAMNLQWPGWIPLTIFCTCFWVSGYGMLPLPWMLLSEVFPLQVRGIAS 428
            +    T+M      +      + + I  T        +L   +  ++  F ++      
Sbjct: 291 ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIY 350

Query: 429 GITAA-SSSVVNFISTKTYINLTSWFGLHGTLFIYTLVSFLGFIYIYFYVPETEDRTL 485
            +       +     +    N+    G  G   +  LV+    +   F +      +L
Sbjct: 351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408


>d1ro0a_ d.264.1.2 (A:) Bifunctional DNA primase/polymerase
           N-terminal domain {Archaeon Sulfolobus islandicus
           [TaxId: 43080]}
          Length = 210

 Score = 27.7 bits (61), Expect = 3.1
 Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 196 WRTTVLISAIFPILTMIMIAFIPESPTWLVSKGR---LEEAERSLRWVRG 242
            +       ++  L  I    +     +L  KG+   +  ++ +  W+ G
Sbjct: 161 EQNYTTCYTLYNELKEISKVDLKSLLRFLAEKGKRLGITLSKTAKEWLEG 210


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.432 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,871,453
Number of extensions: 85980
Number of successful extensions: 274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 16
Length of query: 513
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 424
Effective length of database: 1,185,626
Effective search space: 502705424
Effective search space used: 502705424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.2 bits)