BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8368
(372 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 13 DGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIP 72
D ++K + +G G+ A V V Y Y E + P D Y RK+ P +LG +
Sbjct: 25 DRGVLKDVIREGAGDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKT-PRLMKLGEDITLW 83
Query: 73 AFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
E +LSM++GE + F +G LGCPP IP +LFE+ L++F
Sbjct: 84 GMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDF 132
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 12 QDGKLMKKIKEKGFGE-NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
+DG ++K IK++G G P G V+VHY+ E N D + R F LG +
Sbjct: 12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLE-NGTKFDSSRDRGD-QFSFNLGRGNV 69
Query: 71 IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS 122
I ++ + +M KGE ++F + +G G PP+IP A L+FEV L +S
Sbjct: 70 IKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWS 121
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 12 QDGKLMKKIKEKGFGE-NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
+D ++K +K G GE P++G V VHY AN D ++ R P F +G +
Sbjct: 29 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKL-ANGKKFDSSHDRNE-PFVFSIGKGQV 86
Query: 71 IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
I A++ + +M+KGE E +GA G P+IP+ A L FEV L++F
Sbjct: 87 IKAWDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF 137
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 109/258 (42%), Gaps = 29/258 (11%)
Query: 7 GKEQIQDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQL 65
G++ ++DG ++++ K +G G NP GA VQ+H D + ++ E
Sbjct: 139 GEDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLE--GRCGGRVFDCRDVAFTVGE---- 192
Query: 66 GSSGLIP-AFEYAILSMQKGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHLINFSI 123
G IP + A+ MQ+ E+ FG G P I A+L++EV L +F
Sbjct: 193 GEDHDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF-- 250
Query: 124 DPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVK 183
+ + S ++++ ++E+ A K G F V AV +Y V
Sbjct: 251 --EKAKESWEMDTK---EKLEQAAIVK---------EKGTVYFKGGKYVQAVIQYGKIVS 296
Query: 184 LLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVK 243
L + ++ E +L + NL +CY ++Y +C KAL S + K
Sbjct: 297 WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS----ANEK 352
Query: 244 LFFVWGKALIGLQEWTSA 261
+ G+A + + E+ SA
Sbjct: 353 GLYRRGEAQLLMNEFESA 370
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 12 QDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER----FQLG 66
QD ++K IK +G G E P++G V VHY + +D T S+ + F LG
Sbjct: 28 QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWL------LDGTKFDSSLDRKDKFSFDLG 81
Query: 67 SSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
+I A++ A+ +M+ GE E +G+ G PP+IP A L+FEV L F
Sbjct: 82 KGEVIKAWDIAVATMKVGELCRITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 136
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 12 QDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER----FQLG 66
QD ++K IK +G G E P++G V VHY + +D T S+ + F LG
Sbjct: 29 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWL------LDGTKFDSSLDRKDKFSFDLG 82
Query: 67 SSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
+I A++ AI +M+ GE E +G+ G PP+IP A L+FEV L F
Sbjct: 83 KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 137
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 12 QDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER----FQLG 66
QD ++K IK +G G E P++G V VHY + +D T S+ + F LG
Sbjct: 33 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWL------LDGTKFDSSLDRKDKFSFDLG 86
Query: 67 SSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
+I A++ AI +M+ GE E +G+ G PP+IP A L+FEV L F
Sbjct: 87 KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 141
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 12 QDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER----FQLG 66
QD ++K IK +G G E P++G V VHY + +D T S+ + F LG
Sbjct: 49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWL------LDGTKFDSSLDRKDKFSFDLG 102
Query: 67 SSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
+I A++ AI +M+ GE E +G+ G PP+IP A L+FEV L F
Sbjct: 103 KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 157
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 13/115 (11%)
Query: 12 QDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSS-- 68
+DG ++++I+ +G G P GA V+V Y + D + ++ + RF++G
Sbjct: 166 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYK------DKLFDQREL--RFEIGEGEN 217
Query: 69 -GLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHLINF 121
L E AI M+KGE S + FG++G +IP A+L +E+HL +F
Sbjct: 218 LDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSF 272
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 12 QDGKLMKKIKEKGFG--EN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSS 68
+DG ++K I KG G EN P G V VHY+ E++ D + R ++P +F LG
Sbjct: 13 EDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRER-NVPFKFHLGQG 71
Query: 69 GLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
+I ++ + SM K EK + +G GC IP + L+FE+ LI+F
Sbjct: 72 EVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELISF 124
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 12 QDGKLMKKIKEKGFGE-NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
+D ++K +K G GE P++G V VHY +N D ++ R P F LG +
Sbjct: 29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL-SNGKKFDSSHDRNE-PFVFSLGKGQV 86
Query: 71 IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
I A++ + +M++GE E +G+ G P+IP+ A L FE+ L++F
Sbjct: 87 IKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 137
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 109/258 (42%), Gaps = 29/258 (11%)
Query: 7 GKEQIQDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQL 65
G++ +DG ++++ K KG G NP GA V++H D + ++ E
Sbjct: 139 GEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLE--GRCGGRMFDCRDVAFTVGE---- 192
Query: 66 GSSGLIP-AFEYAILSMQKGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHLINFSI 123
G IP + A+ MQ+ E+ + FG G P I A+L++EV L +F
Sbjct: 193 GEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF-- 250
Query: 124 DPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVK 183
+ + S ++++ ++E+ A K G F + AV +Y V
Sbjct: 251 --EKAKESWEMDTK---EKLEQAAIVK---------EKGTVYFKGGKYMQAVIQYGKIVS 296
Query: 184 LLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVK 243
L + ++ E +L + NL +CY ++Y +C KAL S + K
Sbjct: 297 WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS----ANEK 352
Query: 244 LFFVWGKALIGLQEWTSA 261
+ G+A + + E+ SA
Sbjct: 353 GLYRRGEAQLLMNEFESA 370
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 12 QDGKLMKKIKEKGFGE-NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
+D ++K +K G GE P++G V VHY +N D ++ R P F LG +
Sbjct: 33 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL-SNGKKFDSSHDRNE-PFVFSLGKGQV 90
Query: 71 IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
I A++ + +M+KGE E +G+ G P+IP+ A L FE+ L++F
Sbjct: 91 IKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 12 QDGKLMKKIKEKGFGE-NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
+D ++K +K G GE P++G V VHY +N D ++ R P F LG +
Sbjct: 33 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL-SNGKKFDSSHDRNE-PFVFSLGKGQV 90
Query: 71 IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
I A++ + +M+KGE E +G+ G P+IP+ A L FE+ L++F
Sbjct: 91 IKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 12 QDGKLMKKIKEKGFGE-NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
+D ++K +K G GE P++G V VHY +N D ++ R P F LG +
Sbjct: 33 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL-SNGKKFDSSHDRNE-PFVFSLGKGQV 90
Query: 71 IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
I A++ + +M+KGE E +G+ G P+IP+ A L FE+ L++F
Sbjct: 91 IKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 7 GKEQIQDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQL 65
G++ +DG ++++ K KG G NP GA V++H D + ++ E
Sbjct: 143 GEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLE--GRCGGRMFDCRDVAFTVGE---- 196
Query: 66 GSSGLIP-AFEYAILSMQKGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHLINF 121
G IP + A+ MQ+ E+ + FG G P I A+L++EV L +F
Sbjct: 197 GEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF 254
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 12 QDGKLMKKIKEKGFGE-NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
+D ++K +K G GE P++G V VHY +N D ++ R P F LG +
Sbjct: 17 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL-SNGKKFDSSHDRNE-PFVFSLGKGQV 74
Query: 71 IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
I A++ + +M+KGE E +G+ G P+IP+ A L FE+ L++F
Sbjct: 75 IKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 12 QDGKLMKKIKEKGFGE-NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
+D ++K +K G GE P++G V VHY +N D ++ R P F LG +
Sbjct: 17 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL-SNGKKFDSSHDRNE-PFVFSLGKGQV 74
Query: 71 IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
I A++ + +M+KGE E +G+ G P+IP+ A L FE+ L++F
Sbjct: 75 IKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 15 KLMKKIKEKGFG-ENPVLGAHVQVHY-MYYAEANELPIDITYLRKSIPERFQLGSSGLIP 72
+L KK+ G G P G V VHY + + + D + R P +F LG+ +I
Sbjct: 25 QLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQF--DSSRSRGK-PFQFTLGAGEVIK 81
Query: 73 AFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLI 119
++ + +M GEK+ F Y+L +G G PP IP KA L+FEV L+
Sbjct: 82 GWDQGVATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELL 128
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 27 ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEK 86
+ P +G V+VHY + D + R +F+LG +I ++ I +M+KGE
Sbjct: 41 DTPEVGDEVEVHYTGTL-LDGKKFDSSRDRDDT-FKFKLGQGQVIKGWDQGIKTMKKGEN 98
Query: 87 SDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS 122
+ F EL +G G PP IPA A L F+V L++++
Sbjct: 99 ALFTIPPELAYGESGSPPTIPANATLQFDVELLSWT 134
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Query: 12 QDGKLMKKI-KEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
+DG + KKI KE ENP V V Y E D T + KS F + L
Sbjct: 141 KDGGIFKKILKEGDKWENPKDPDEVFVKYEARLE------DGTVVSKSEGVEFTVKDGHL 194
Query: 71 IPAFEYAILSMQKGEKSDFFASYELCFGALGCPP-----RIPAKADLLFEVHLINF 121
PA A+ +M+KGEK + FG +G P +P A L+ ++ L+++
Sbjct: 195 CPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSW 250
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
Query: 13 DGKLMKKI-KEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSI----PERFQLGS 67
D K++KK+ KE E P GA V V +L +L+K P F+
Sbjct: 259 DKKILKKVLKEXEGYERPNEGAVVTVKI-----TGKLQDGTVFLKKGHDEQEPFEFKTDE 313
Query: 68 SGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPR--IPAKADLLFEVHLINFSID 124
+I + A+L+M+KGE + E +G+ +P + +++EV L++F D
Sbjct: 314 EAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKD 372
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 27 ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEK 86
+ P +G V+VHY + D + R +F+LG +I ++ I +M+KGE
Sbjct: 25 DTPEVGDEVEVHYTGTL-LDGKKFDSSRDRDDT-FKFKLGQGQVIKGWDQGIKTMKKGEN 82
Query: 87 SDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS 122
+ F EL +G G PP IPA A L F+V L++++
Sbjct: 83 ALFTIPPELAYGESGSPPTIPANATLQFDVELLSWT 118
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Query: 12 QDGKLMKKI-KEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
+DG + KKI KE ENP V V Y E D T + KS F + L
Sbjct: 125 KDGGIFKKILKEGDKWENPKDPDEVFVKYEARLE------DGTVVSKSEGVEFTVKDGHL 178
Query: 71 IPAFEYAILSMQKGEKSDFFASYELCFGALGCPP-----RIPAKADLLFEVHLINF 121
PA A+ +M+KGEK + FG +G P +P A L+ ++ L+++
Sbjct: 179 CPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSW 234
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
Query: 13 DGKLMKKI-KEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSI----PERFQLGS 67
D K++KK+ KE E P GA V V +L +L+K P F+
Sbjct: 243 DKKILKKVLKEXEGYERPNEGAVVTVKI-----TGKLQDGTVFLKKGHDEQEPFEFKTDE 297
Query: 68 SGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPR--IPAKADLLFEVHLINFSID 124
+I + A+L+M+KGE + E +G+ +P + +++EV L++F D
Sbjct: 298 EAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKD 356
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 9 EQIQDGKLMKKIKEKG-FGEN--PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQL 65
E DG ++K I +KG GE P G V VHY+ E+ D ++ R ++P +F L
Sbjct: 11 ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDR-NVPFKFHL 69
Query: 66 GSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
+I ++ + SM+K EK +G GC IP + LLFE+ L++F
Sbjct: 70 EQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 9 EQIQDGKLMKKIKEKG-FGEN--PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQL 65
E DG ++K I +KG GE P G V VHY+ E+ D ++ R ++P +F L
Sbjct: 11 ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDR-NVPFKFHL 69
Query: 66 GSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
+I ++ + SM+K EK +G GC IP + LLFE+ L++F
Sbjct: 70 EQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 28 NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER----FQLGSSGLIPAFEYAILSMQK 83
+P+ V +M+Y E D T S+P+ F LG+ +I ++ +L M +
Sbjct: 2 SPIKSRKGDVLHMHYTGKLE---DGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCE 58
Query: 84 GEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLI 119
GEK EL +G G PP+IP A L+FEV L+
Sbjct: 59 GEKRKLVIPSELGYGERGAPPKIPGGATLVFEVELL 94
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 116/280 (41%), Gaps = 28/280 (10%)
Query: 10 QIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSG 69
++ D K+ K+I ++G G P + +HY + + ++ + T+ + P LG
Sbjct: 45 EVLDEKVSKQIIKEGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQ-PIELVLGKEK 103
Query: 70 L-IPAFEYAILSMQKGEKSDFFASYELCFGALG--CPPRIPAKADLLFEVHLINFSIDPQ 126
+ + SM+ GE++ +EL +G G P +P ADLL+EV +I F +
Sbjct: 104 KELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKE 163
Query: 127 VVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLI 186
S D VEE A A G + F ++ + A+++Y A+ +
Sbjct: 164 GKARS--------DMTVEERIGA-----ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG 210
Query: 187 NTQV----TNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDV 242
+ + Y+D + C + N+ C K+Y D A K+
Sbjct: 211 DDFMFQLYGKYQDMALAVKNPCHL--NIAACLIKLKRY----DEAIGHCNIVLTEEEKNP 264
Query: 243 KLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD-SVRAEI 281
K F GKA L + SA + A+K A D ++R E+
Sbjct: 265 KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRREL 304
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 116/263 (44%), Gaps = 33/263 (12%)
Query: 4 VPYGKEQIQDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER 62
VP G +DG ++++I+ +G G P GA V+V Y + D + ++ + R
Sbjct: 15 VPRGSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYK------DKLFDQREL--R 66
Query: 63 FQLGSS---GLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHL 118
F++G L E AI M+KGE S + FG++G +IP A+L +E+HL
Sbjct: 67 FEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHL 126
Query: 119 INFSIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRY 178
+F + + S ++ S + ++E+ K G F + A+ +Y
Sbjct: 127 KSF----EKAKESWEMNS---EEKLEQSTIVK---------ERGTVYFKEGKYKQALLQY 170
Query: 179 RDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFA 238
+ V L + E+ + + + NL +C+ + + + +KAL+ S+
Sbjct: 171 KKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN-- 228
Query: 239 TKDVKLFFVWGKALIGLQEWTSA 261
+ K F G+A + + ++ A
Sbjct: 229 --NEKGLFRRGEAHLAVNDFELA 249
>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
pdb|2F4E|B Chain B, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
Length = 180
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 10 QIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSG 69
++ D K+ K+I ++G G P + +HY + + ++ + T+ + P LG
Sbjct: 45 EVLDEKVSKQIIKEGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQ-PIELVLGKEK 103
Query: 70 L-IPAFEYAILSMQKGEKSDFFASYELCFGALG--CPPRIPAKADLLFEVHLINF 121
+ + SM+ GE++ +EL +G G P +P ADLL+EV +I F
Sbjct: 104 KELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGF 158
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 57 KSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEV 116
++ P +F++G +I FE M G+++ + ++ +GA G P IP A L+F+V
Sbjct: 42 RNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDV 101
Query: 117 HLINF 121
L+N
Sbjct: 102 ELLNL 106
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 103/238 (43%), Gaps = 29/238 (12%)
Query: 4 VPYGKEQIQDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER 62
VP G +DG ++++I+ +G G P GA V+V Y + D + ++ + R
Sbjct: 15 VPRGSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYK------DKLFDQREL--R 66
Query: 63 FQLGSS---GLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHL 118
F++G L E AI +KGE S + FG++G +IP A+L +E+HL
Sbjct: 67 FEIGEGENLDLPYGLERAIQRXEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHL 126
Query: 119 INFSIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRY 178
+F + + S + S + ++E+ K G F + A+ +Y
Sbjct: 127 KSF----EKAKESWEXNS---EEKLEQSTIVK---------ERGTVYFKEGKYKQALLQY 170
Query: 179 RDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH 236
+ V L + E+ + + + NL +C+ + + + +KAL+ S+
Sbjct: 171 KKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 57 KSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEV 116
++ P +F LG +I FE + M G+++ S + +GA G P IP A L+F+V
Sbjct: 42 RNKPFKFMLGKQEVIRGFEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDV 101
Query: 117 HLINF 121
L+
Sbjct: 102 ELLKL 106
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 57 KSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEV 116
K+ P +F LG +I +E + M G+++ S + +GA G P IP A L+F+V
Sbjct: 42 KNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGVPGIIPPHATLVFDV 101
Query: 117 HLINF 121
L+
Sbjct: 102 ELLKL 106
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 42.4 bits (98), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 29 PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSD 88
P G VHY E + +D + R P +F LG +I +E + M G+++
Sbjct: 16 PKRGQTCVVHYTGMLEDGK-KVDSSRDRNK-PFKFMLGKQEVIRGWEEGVAQMSVGQRAK 73
Query: 89 FFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
S + +GA G P IP A L+F+V L+
Sbjct: 74 LTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 42.4 bits (98), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 56 RKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCP-PRIPAKADLLF 114
+ + P F++G +I ++ A+L+M KGEK+ E +G G P +IP A L F
Sbjct: 49 KNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTF 108
Query: 115 EVHLIN 120
EV L++
Sbjct: 109 EVELVD 114
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 56 RKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCP-PRIPAKADLLF 114
+ + P F++G +I ++ A+L+M KGEK+ E +G G P +IP L+F
Sbjct: 52 KNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIF 111
Query: 115 EVHLIN 120
EV L++
Sbjct: 112 EVELVD 117
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 42.0 bits (97), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 29 PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSD 88
P G VHY E + +D + R P +F LG +I +E + M G+++
Sbjct: 16 PKRGQTCVVHYTGMLEDGK-KMDSSRDRNK-PFKFMLGKQEVIRGWEEGVAQMSVGQRAK 73
Query: 89 FFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
S + +GA G P IP A L+F+V L+
Sbjct: 74 LTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 29 PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSD 88
P G VHY E + D + R P +F LG +I +E + M G+++
Sbjct: 16 PKAGQTCVVHYTGMLEDGK-KFDSSRDRNK-PFKFMLGKQEVIRGWEEGVAQMSVGQRAK 73
Query: 89 FFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
S + +GA G P IP A L+F+V L+
Sbjct: 74 LTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 57 KSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEV 116
++ P +F LG +I +E + M G+++ S + +GA G P IP A L+F+V
Sbjct: 42 RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDV 101
Query: 117 HLINF 121
L+
Sbjct: 102 ELLKL 106
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 57 KSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEV 116
++ P +F LG +I +E + M G+++ S + +GA G P IP A L+F+V
Sbjct: 44 RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDV 103
Query: 117 HLINF 121
L+
Sbjct: 104 ELLKL 108
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 41.2 bits (95), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 57 KSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEV 116
++ P +F LG +I +E + M G+++ S + +GA G P IP A L+F+V
Sbjct: 42 RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDV 101
Query: 117 HLINF 121
L+
Sbjct: 102 ELLKL 106
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 57 KSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEV 116
++ P +F LG +I +E + M G+++ S + +GA G P IP A L+F+V
Sbjct: 42 RNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPNATLIFDV 101
Query: 117 HLINF 121
L+
Sbjct: 102 ELLKL 106
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 57 KSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEV 116
++ P +F LG +I E + M G+++ S + +GA G P IP A L+F+V
Sbjct: 42 RNKPFKFMLGKQEVIRGLEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDV 101
Query: 117 HLINF 121
L+
Sbjct: 102 ELLKL 106
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 17/101 (16%)
Query: 137 DFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQ 196
D+ D + + AF ++ G F I A+ +Y++A+ I+T+ ++DQ
Sbjct: 28 DYTDEEKVQSAF--------DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE--EWDDQ 77
Query: 197 MQLE-----EYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232
+ L+ E C + NL CYN NK Y D ASK L+
Sbjct: 78 ILLDKKKNIEISCNL--NLATCYNKNKDYPKAIDHASKVLK 116
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 57 KSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEV 116
++ P +F LG +I ++ + M G+++ S + +GA G P IP A L+F+V
Sbjct: 42 RNKPFKFMLGKQEVIRGWQEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDV 101
Query: 117 HLINF 121
L+
Sbjct: 102 ELLKL 106
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 7 GKEQIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLG 66
G +++ DG LM ++ G G P V+V Y+ LP + + + P+ F+L
Sbjct: 111 GVKELADGILMTELT-PGTGPKPDANGRVEVRYV-----GRLPDGKIFDQSTQPQWFRLD 164
Query: 67 SSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS 122
S +I + A+ +M G K + +GA G I L+FE+ LI S
Sbjct: 165 S--VISGWTSALQNMPTGAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIAVS 218
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 57 KSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEV 116
++ P +F LG +I + + M G+++ S + +GA G P IP A L+F+V
Sbjct: 42 RNKPFKFMLGKQEVIRGWAEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDV 101
Query: 117 HLINF 121
L+
Sbjct: 102 ELLKL 106
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 77/180 (42%), Gaps = 9/180 (5%)
Query: 130 SSADIESDFI-DSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINT 188
S D DF D+ V+ K+L +++L G F +N A+++Y ++ + +
Sbjct: 197 GSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS 256
Query: 189 QVTNYE-DQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFV 247
+ + D +L+ N+ C ++ D +AL+ + K +
Sbjct: 257 RAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP----SNTKALYR 312
Query: 248 WGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMF 307
+ GL+E+ A+ LK A+++A +D I E+LK + + + KA KMF
Sbjct: 313 RAQGWQGLKEYDQALADLKKAQEIAPEDKA---IQAELLKVKQKIKAQKDKEKAAYAKMF 369
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 23 KGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQ 82
+G G G V VHY + + D + R P F LG +I ++ + M+
Sbjct: 113 EGSGAEARAGQTVSVHYTGWLTDGQ-KFDSSKDRND-PFEFVLGGGMVIKGWDEGVQGMK 170
Query: 83 KGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLIN 120
G +L +GA G IP A L+FEV L++
Sbjct: 171 VGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 208
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 23 KGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQ 82
+G G G V VHY + + D + R P F LG +I ++ + M+
Sbjct: 113 EGSGAEARAGQTVSVHYTGWLTDGQ-KFDSSKDRND-PFAFVLGGGMVIKGWDEGVQGMK 170
Query: 83 KGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLIN 120
G +L +GA G IP A L+FEV L++
Sbjct: 171 VGGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELLD 208
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 23 KGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQ 82
+G G G V VHY + + D + R P F LG +I ++ + M+
Sbjct: 113 EGSGAEARAGQTVSVHYTGWLTDGQ-KFDSSKDRND-PFAFVLGGGMVIKGWDEGVQGMK 170
Query: 83 KGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLIN 120
G +L +GA G IP A L+FEV L++
Sbjct: 171 VGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 208
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 23 KGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQ 82
+G G G V VHY + + D + R P F LG +I ++ + M+
Sbjct: 113 EGSGAEARAGQTVSVHYTGWLTDGQ-KFDSSKDRND-PFAFVLGGGMVIKGWDEGVQGMK 170
Query: 83 KGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLIN 120
G +L +GA G IP A L+FEV L++
Sbjct: 171 VGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 208
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 23 KGFGENPVLGAHVQVHYM-YYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSM 81
+G G G V VHY + + + + ++ P F LG +I ++ + M
Sbjct: 113 EGSGAEARAGQTVSVHYTGWLTDGQKFG---SSKDRNDPFAFVLGGGMVIKGWDEGVQGM 169
Query: 82 QKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLIN 120
+ G +L +GA G IP A L+FEV L++
Sbjct: 170 KVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 208
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 23 KGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQ 82
+G G G V VHY + + D + R P F LG +I ++ + M+
Sbjct: 37 EGSGAEARAGQTVSVHYTGWLTDGQ-KFDSSKDRND-PFAFVLGGGMVIKGWDEGVQGMK 94
Query: 83 KGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLIN 120
G +L +GA G IP A L+FEV L++
Sbjct: 95 VGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 132
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 16 LMKKIKEKGFGENPVLGAHVQVHYM-YYAEANELPIDITYLRKSIPERFQLGSSGLIPAF 74
L+ ++ E G GE P V V+Y + E D +Y R P F+L G+IP +
Sbjct: 123 LVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEF--DNSYTRGE-PLSFRL--DGVIPGW 177
Query: 75 EYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQV 127
+ +++KG K EL +G G P IP + L+F+V L++ P+
Sbjct: 178 TEGLKNIKKGGKIKLVIPPELAYGKAGV-PGIPPNSTLVFDVELLDVKPAPKA 229
>pdb|1RPX|A Chain A, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
pdb|1RPX|B Chain B, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
pdb|1RPX|C Chain C, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
Length = 230
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 19/170 (11%)
Query: 111 DLLFEVHLINFSID---PQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFN 167
DL +VHL+ D P +++ ADI S + Q + + + + LGA N
Sbjct: 68 DLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCE-QSSTIHLHRTINQIKSLGAKAGVVLN 126
Query: 168 DKNIVSAVRRYRDAVKLLINTQVT-NYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDC 226
++A+ DAV L++ V + Q +E + ++ +C + D
Sbjct: 127 PGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDG 186
Query: 227 ------ASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARK 270
A K ++ ++ V G A+ G ++ AIK +KT+++
Sbjct: 187 GVGPKNAYKVIEAGANA--------LVAGSAVFGAPDYAEAIKGIKTSKR 228
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 16 LMKKIKEKGFGENPVLGAHVQVHYM-YYAEANELPIDITYLRKSIPERFQLGSSGLIPAF 74
L+ ++ E G GE P V V+Y + E D +Y R P F+L G+IP +
Sbjct: 123 LVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEF--DNSYTRGE-PLSFRL--DGVIPGW 177
Query: 75 EYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLIN 120
+ +++KG K EL +G G P IP + L+F+V L++
Sbjct: 178 TEGLKNIKKGGKIKLVIPPELAYGKAGV-PGIPPNSTLVFDVELLD 222
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 23 KGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQ 82
+G G G V VHY + + D + R P F LG +I ++ + M+
Sbjct: 17 EGSGAEARAGQTVSVHYTGWLTDGQ-KFDSSKDRND-PFAFVLGGGHVIKGWDEGVQGMK 74
Query: 83 KGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLIN 120
G +L +GA G IP A L+FEV L++
Sbjct: 75 VGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 112
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 70 LIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
+I + A+ M++G++ F Y+L +G G IP + L F+V LI+
Sbjct: 90 VIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISI 141
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 23 KGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQ 82
+G G G V VHY + + D + R P F LG +I ++ + M+
Sbjct: 21 EGSGAEARAGQTVSVHYTGWLTDGQ-KFDSSKDRND-PFAFVLGGGMVIKGWDEGVQGMK 78
Query: 83 KGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLIN 120
G +L +GA G IP A L+FEV L++
Sbjct: 79 VGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 116
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 33.9 bits (76), Expect = 0.16, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 29 PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSD 88
P G V +HY E N D + R S P + +G +I ++ I + GEK+
Sbjct: 22 PKTGDLVTIHYTGTLE-NGQKFDSSVDRGS-PFQCNIGVGQVIKGWDVGIPKLSVGEKAR 79
Query: 89 FFASYELCFGALGCPPRIPAKADLLFEVHLI 119
+G G P IP + L+F+V L+
Sbjct: 80 LTIPGPYAYGPRGFPGLIPPNSTLVFDVELL 110
>pdb|1PX5|A Chain A, Crystal Structure Of The 2'-Specific And Double-Stranded
Rna-Activated Interferon-Induced Antiviral Protein
2'-5'- Oligoadenylate Synthetase
pdb|1PX5|B Chain B, Crystal Structure Of The 2'-Specific And Double-Stranded
Rna-Activated Interferon-Induced Antiviral Protein
2'-5'- Oligoadenylate Synthetase
Length = 349
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 18/166 (10%)
Query: 107 PAK-ADLLFEVHLINFSIDPQVVRSSADIESDFIDSQVEEPAFAKV-LKRAQELGASGKN 164
PA+ D E HL+ + V+ + DI F+ + + V + + + G+SGK
Sbjct: 7 PARDLDKFIEDHLLPNTXFRTQVKEAIDIVXRFLKERCFQGTADPVRVSKVVKGGSSGKG 66
Query: 165 AFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLE-EYLCRVYRNLMVCYNNNKQYKLT 223
+ +R DA ++ T++T++EDQ++ E++ + R L C K +K+T
Sbjct: 67 --------TTLRGRSDADLVVFLTKLTSFEDQLRRRGEFIQEIRRQLEACQREQK-FKVT 117
Query: 224 CDCAS------KALQFASHFATKDVKLFFVWGKALIGLQEWTSAIK 263
+ S +AL F ++ F A L +WT K
Sbjct: 118 FEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYK 163
>pdb|2VRY|A Chain A, Mouse Neuroglobin With Heme Iron In The Reduced Ferrous
State
pdb|3GK9|A Chain A, Crystal Structure Of Murine Ngb Under Xe Pressure
pdb|3GKT|A Chain A, Crystal Structure Of Murine Neuroglobin Under Kr Pressure
pdb|3GLN|A Chain A, Carbonmonoxy Ngb Under Xenon Pressure
Length = 154
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 145 EPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLC 204
EP+ + + +S +++ + + +R+ V L+I+ VTN ED LEEYL
Sbjct: 38 EPSLLPLFQYNGRQFSSPEDSLSSPEFLDHIRK----VMLVIDAAVTNVEDLSSLEEYLT 93
Query: 205 RVYR 208
+ R
Sbjct: 94 SLGR 97
>pdb|1Q1F|A Chain A, Crystal Structure Of Murine Neuroglobin
pdb|1W92|A Chain A, The Structure Of Carbomonoxy Murine Neuroglobin Reveals A
Heme-Sliding Mechanism For Affinity Regulation
Length = 151
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 145 EPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLC 204
EP+ + + +S +++ + + +R+ V L+I+ VTN ED LEEYL
Sbjct: 35 EPSLLPLFQYNGRQFSSPEDSLSSPEFLDHIRK----VMLVIDAAVTNVEDLSSLEEYLT 90
Query: 205 RVYR 208
+ R
Sbjct: 91 SLGR 94
>pdb|1OJ6|A Chain A, Human Brain Neuroglobin Three-Dimensional Structure
pdb|1OJ6|B Chain B, Human Brain Neuroglobin Three-Dimensional Structure
pdb|1OJ6|C Chain C, Human Brain Neuroglobin Three-Dimensional Structure
pdb|1OJ6|D Chain D, Human Brain Neuroglobin Three-Dimensional Structure
Length = 151
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYR 208
+S +++ + + +R+ V L+I+ VTN ED LEEYL + R
Sbjct: 50 SSPEDSLSSPEFLDHIRK----VMLVIDAAVTNVEDLSSLEEYLASLGR 94
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 19/132 (14%)
Query: 144 EEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYL 203
+EP LKRA+EL + F K+ +A++ Y A++L + +
Sbjct: 2 DEPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI------------- 48
Query: 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIK 263
Y N + Y + Y A++A++ + +K ++ + + L ++ +A++
Sbjct: 49 --YYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRAALR 102
Query: 264 HLKTARKLAAKD 275
+T K+ D
Sbjct: 103 DYETVVKVKPHD 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,115,896
Number of Sequences: 62578
Number of extensions: 387280
Number of successful extensions: 899
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 825
Number of HSP's gapped (non-prelim): 72
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)