Query psy8368
Match_columns 372
No_of_seqs 298 out of 2783
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 16:51:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543|consensus 100.0 7E-51 1.5E-55 375.5 33.3 275 13-315 83-361 (397)
2 KOG0545|consensus 100.0 2.4E-36 5.1E-41 260.2 17.1 278 12-308 8-328 (329)
3 KOG0544|consensus 99.9 6.2E-26 1.3E-30 165.5 11.5 105 15-121 2-107 (108)
4 COG0545 FkpA FKBP-type peptidy 99.9 8E-24 1.7E-28 179.1 12.4 108 11-122 98-205 (205)
5 PRK11570 peptidyl-prolyl cis-t 99.9 7.9E-21 1.7E-25 166.3 14.1 106 12-121 100-205 (206)
6 KOG0553|consensus 99.9 8.1E-21 1.8E-25 169.8 13.2 125 150-296 76-200 (304)
7 TIGR03516 ppisom_GldI peptidyl 99.8 5.6E-20 1.2E-24 157.2 14.1 109 11-122 66-176 (177)
8 KOG0549|consensus 99.8 6.6E-20 1.4E-24 151.9 13.9 109 12-122 66-176 (188)
9 KOG4234|consensus 99.8 2.1E-19 4.6E-24 151.4 15.3 134 150-300 90-223 (271)
10 PRK10902 FKBP-type peptidyl-pr 99.8 1E-18 2.2E-23 158.6 14.4 107 11-122 143-249 (269)
11 KOG0552|consensus 99.8 2.2E-18 4.8E-23 149.8 12.3 109 10-121 116-225 (226)
12 PF00254 FKBP_C: FKBP-type pep 99.8 5.1E-18 1.1E-22 131.1 12.3 92 26-119 1-94 (94)
13 KOG0543|consensus 99.8 1E-17 2.2E-22 155.8 15.7 265 22-312 1-323 (397)
14 KOG0548|consensus 99.7 3E-16 6.4E-21 149.8 12.9 117 154-292 357-473 (539)
15 KOG0547|consensus 99.7 5.7E-16 1.2E-20 146.0 14.3 127 149-297 109-236 (606)
16 KOG4648|consensus 99.7 5.2E-16 1.1E-20 140.7 10.1 120 149-290 91-210 (536)
17 KOG0550|consensus 99.6 4.2E-15 9.1E-20 137.8 13.6 151 140-312 232-384 (486)
18 PLN03088 SGT1, suppressor of 99.6 3.2E-14 6.9E-19 136.3 15.7 119 155-295 2-120 (356)
19 KOG0548|consensus 99.5 2.8E-14 6.1E-19 136.3 10.8 113 155-289 2-114 (539)
20 KOG0551|consensus 99.5 1E-13 2.2E-18 125.5 13.1 109 153-276 79-187 (390)
21 PRK15359 type III secretion sy 99.5 4.1E-13 8.9E-18 112.0 15.5 114 157-292 26-139 (144)
22 TIGR00990 3a0801s09 mitochondr 99.5 3.8E-13 8.3E-18 138.4 17.5 134 106-276 95-228 (615)
23 KOG0546|consensus 99.5 5.1E-14 1.1E-18 128.7 7.4 176 124-308 193-372 (372)
24 KOG4626|consensus 99.4 7.5E-13 1.6E-17 128.2 12.5 170 156-366 355-524 (966)
25 TIGR02552 LcrH_SycD type III s 99.4 1.6E-11 3.5E-16 100.9 15.4 115 155-291 17-131 (135)
26 PRK15095 FKBP-type peptidyl-pr 99.4 1.4E-12 3E-17 109.5 8.9 72 28-101 4-75 (156)
27 KOG0376|consensus 99.4 4.7E-13 1E-17 127.1 6.2 121 154-296 3-123 (476)
28 PRK15363 pathogenicity island 99.4 2.5E-11 5.3E-16 100.6 14.8 105 153-276 33-137 (157)
29 KOG4626|consensus 99.4 3E-12 6.6E-17 124.1 9.8 122 154-297 251-372 (966)
30 KOG4642|consensus 99.3 3.9E-12 8.4E-17 110.5 9.0 119 153-290 8-128 (284)
31 PF13414 TPR_11: TPR repeat; P 99.3 2.4E-11 5.1E-16 87.8 7.6 66 204-273 3-69 (69)
32 TIGR00990 3a0801s09 mitochondr 99.3 1.5E-10 3.2E-15 119.3 16.4 118 154-293 330-447 (615)
33 PRK11189 lipoprotein NlpI; Pro 99.3 2.4E-10 5.3E-15 106.9 16.5 105 153-276 62-166 (296)
34 KOG0624|consensus 99.2 8.3E-11 1.8E-15 107.2 12.5 175 131-328 243-419 (504)
35 PRK10370 formate-dependent nit 99.2 2.4E-10 5.1E-15 100.5 15.1 103 155-276 73-178 (198)
36 COG1047 SlpA FKBP-type peptidy 99.2 3.5E-11 7.6E-16 100.7 8.6 71 29-101 3-73 (174)
37 PRK10737 FKBP-type peptidyl-pr 99.1 1.5E-10 3.3E-15 99.9 8.7 70 29-101 3-72 (196)
38 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.6E-09 3.5E-14 86.4 13.5 105 156-276 3-110 (119)
39 KOG1308|consensus 99.1 1.1E-10 2.4E-15 106.5 6.3 118 140-276 99-216 (377)
40 PRK09782 bacteriophage N4 rece 99.1 4.1E-09 8.8E-14 112.5 17.4 119 156-296 610-728 (987)
41 PF13432 TPR_16: Tetratricopep 99.1 7.3E-10 1.6E-14 79.0 7.7 65 208-276 1-65 (65)
42 cd00189 TPR Tetratricopeptide 99.1 2.7E-09 5.8E-14 79.8 11.3 99 157-274 2-100 (100)
43 PRK02603 photosystem I assembl 99.1 3.4E-09 7.5E-14 91.0 13.3 110 151-276 31-154 (172)
44 TIGR03302 OM_YfiO outer membra 99.1 9.6E-09 2.1E-13 92.6 16.8 156 154-329 32-198 (235)
45 KOG1126|consensus 99.0 5.1E-10 1.1E-14 109.9 8.7 134 154-310 420-553 (638)
46 COG0544 Tig FKBP-type peptidyl 99.0 5.1E-08 1.1E-12 95.1 22.0 96 29-139 158-253 (441)
47 PRK10370 formate-dependent nit 99.0 9.6E-09 2.1E-13 90.3 15.1 127 168-317 52-181 (198)
48 PRK15359 type III secretion sy 99.0 4.8E-09 1E-13 87.4 12.3 97 207-311 27-123 (144)
49 PF12895 Apc3: Anaphase-promot 99.0 1.1E-09 2.4E-14 82.4 7.3 83 168-268 2-84 (84)
50 PRK15179 Vi polysaccharide bio 99.0 7.2E-09 1.6E-13 106.7 15.5 137 153-312 84-220 (694)
51 KOG0553|consensus 99.0 9.2E-09 2E-13 92.9 14.0 108 206-321 83-190 (304)
52 KOG4555|consensus 99.0 1.9E-08 4.2E-13 79.8 14.1 111 151-276 39-149 (175)
53 KOG0547|consensus 99.0 6E-09 1.3E-13 99.2 13.3 105 153-276 324-428 (606)
54 TIGR00115 tig trigger factor. 99.0 1.1E-07 2.3E-12 93.2 22.5 85 28-122 146-230 (408)
55 KOG1173|consensus 99.0 4E-09 8.6E-14 102.0 11.8 120 157-291 416-535 (611)
56 KOG1155|consensus 99.0 5.6E-09 1.2E-13 98.8 12.3 125 160-307 335-459 (559)
57 KOG0624|consensus 99.0 8.7E-09 1.9E-13 94.2 12.9 117 153-288 36-152 (504)
58 CHL00033 ycf3 photosystem I as 99.0 1.3E-08 2.7E-13 87.1 13.5 109 152-276 32-154 (168)
59 COG3063 PilF Tfp pilus assembl 99.0 1.2E-08 2.7E-13 88.7 13.3 137 153-297 33-191 (250)
60 TIGR02521 type_IV_pilW type IV 99.0 2.3E-08 5E-13 88.4 15.6 121 156-296 66-186 (234)
61 PF13414 TPR_11: TPR repeat; P 98.9 3.4E-09 7.4E-14 76.4 7.5 66 155-239 3-69 (69)
62 PRK15174 Vi polysaccharide exp 98.9 1.6E-08 3.4E-13 104.8 15.1 114 162-297 219-336 (656)
63 PRK15331 chaperone protein Sic 98.9 2.7E-08 5.9E-13 82.9 13.6 104 153-276 35-138 (165)
64 PRK12370 invasion protein regu 98.9 2.3E-08 5E-13 101.7 16.0 104 154-276 301-406 (553)
65 TIGR02521 type_IV_pilW type IV 98.9 3.8E-08 8.2E-13 87.0 15.6 133 153-308 29-163 (234)
66 PRK09782 bacteriophage N4 rece 98.9 2.6E-08 5.7E-13 106.3 16.2 101 204-312 609-709 (987)
67 KOG1155|consensus 98.9 4.2E-08 9.2E-13 93.0 15.5 131 154-307 363-493 (559)
68 PRK12370 invasion protein regu 98.9 2.7E-08 5.9E-13 101.1 15.0 70 218-294 318-387 (553)
69 KOG1126|consensus 98.9 1.6E-08 3.4E-13 99.6 12.3 122 154-297 488-609 (638)
70 TIGR02552 LcrH_SycD type III s 98.9 3E-08 6.4E-13 81.3 12.3 114 176-312 4-117 (135)
71 PRK01490 tig trigger factor; P 98.9 5.5E-07 1.2E-11 88.9 23.3 85 28-122 157-241 (435)
72 PF13424 TPR_12: Tetratricopep 98.9 1.5E-08 3.3E-13 74.9 8.5 71 202-272 3-76 (78)
73 KOG1125|consensus 98.9 6.8E-09 1.5E-13 100.7 8.3 99 157-274 432-530 (579)
74 PRK10866 outer membrane biogen 98.9 3E-07 6.5E-12 83.4 18.5 156 155-330 32-208 (243)
75 PRK11189 lipoprotein NlpI; Pro 98.8 5.7E-08 1.2E-12 91.0 13.5 112 169-298 40-151 (296)
76 PRK15174 Vi polysaccharide exp 98.8 8.8E-08 1.9E-12 99.3 15.5 133 155-310 246-382 (656)
77 PRK11447 cellulose synthase su 98.8 2E-07 4.3E-12 102.8 19.0 127 155-289 303-429 (1157)
78 PF13371 TPR_9: Tetratricopept 98.8 2.6E-08 5.6E-13 72.5 8.2 69 211-286 2-70 (73)
79 KOG0550|consensus 98.8 1.6E-08 3.4E-13 94.6 8.5 93 150-261 44-136 (486)
80 PF13429 TPR_15: Tetratricopep 98.8 3.4E-08 7.4E-13 91.6 10.7 122 155-298 146-267 (280)
81 COG5010 TadD Flp pilus assembl 98.8 1.3E-07 2.8E-12 83.9 13.6 122 156-299 101-222 (257)
82 PF13525 YfiO: Outer membrane 98.8 3.3E-07 7.1E-12 81.0 16.1 156 154-329 4-173 (203)
83 PF14559 TPR_19: Tetratricopep 98.8 2E-08 4.3E-13 72.1 6.3 68 214-288 1-68 (68)
84 PRK10803 tol-pal system protei 98.8 2.1E-07 4.6E-12 85.1 14.5 104 157-276 144-251 (263)
85 PF13512 TPR_18: Tetratricopep 98.8 2.2E-07 4.9E-12 75.8 13.0 106 155-276 10-133 (142)
86 PLN02789 farnesyltranstransfer 98.8 8E-07 1.7E-11 83.7 18.6 116 154-291 70-188 (320)
87 COG3063 PilF Tfp pilus assembl 98.8 4E-07 8.7E-12 79.4 15.1 125 204-336 35-178 (250)
88 TIGR03302 OM_YfiO outer membra 98.8 5E-07 1.1E-11 81.4 16.5 128 156-299 71-223 (235)
89 PRK15363 pathogenicity island 98.7 1.5E-07 3.3E-12 78.1 11.5 101 204-312 35-135 (157)
90 TIGR02917 PEP_TPR_lipo putativ 98.7 3.3E-07 7.2E-12 97.3 16.2 133 156-312 737-869 (899)
91 PRK15179 Vi polysaccharide bio 98.7 3.6E-07 7.7E-12 94.3 15.6 118 154-292 119-236 (694)
92 PRK10049 pgaA outer membrane p 98.7 3.7E-07 7.9E-12 96.4 15.8 113 156-291 50-162 (765)
93 TIGR02917 PEP_TPR_lipo putativ 98.7 3.5E-07 7.6E-12 97.1 15.7 121 154-296 124-244 (899)
94 PRK11788 tetratricopeptide rep 98.7 5E-07 1.1E-11 87.5 15.1 146 156-308 108-277 (389)
95 PLN02789 farnesyltranstransfer 98.7 1.1E-06 2.5E-11 82.7 16.6 111 165-297 47-160 (320)
96 PRK11788 tetratricopeptide rep 98.7 8.8E-07 1.9E-11 85.8 16.4 129 157-309 182-311 (389)
97 PRK11447 cellulose synthase su 98.7 3.8E-07 8.2E-12 100.6 15.3 130 160-312 274-417 (1157)
98 KOG1840|consensus 98.7 6.8E-07 1.5E-11 88.4 15.4 146 153-306 239-393 (508)
99 cd00189 TPR Tetratricopeptide 98.6 4.9E-07 1.1E-11 67.2 11.0 93 206-306 2-94 (100)
100 KOG1310|consensus 98.6 1.3E-07 2.8E-12 90.9 8.5 123 148-292 367-492 (758)
101 PLN03088 SGT1, suppressor of 98.6 4.7E-07 1E-11 86.9 12.4 98 207-312 5-102 (356)
102 KOG2076|consensus 98.6 1.8E-06 3.9E-11 87.9 16.7 136 153-311 137-272 (895)
103 TIGR02795 tol_pal_ybgF tol-pal 98.6 1E-06 2.2E-11 70.0 11.5 101 205-310 3-106 (119)
104 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 2.6E-07 5.6E-12 88.7 9.0 64 204-271 75-141 (453)
105 PF13424 TPR_12: Tetratricopep 98.5 4.5E-07 9.7E-12 66.9 8.3 73 153-233 3-75 (78)
106 KOG2003|consensus 98.5 2.9E-07 6.3E-12 87.1 8.9 121 156-298 491-611 (840)
107 PF13432 TPR_16: Tetratricopep 98.5 2.5E-07 5.5E-12 65.7 6.6 64 160-242 2-65 (65)
108 CHL00033 ycf3 photosystem I as 98.5 1.3E-06 2.8E-11 74.7 11.8 83 204-293 35-120 (168)
109 PRK10049 pgaA outer membrane p 98.5 1.9E-06 4.1E-11 91.1 14.7 102 156-276 360-461 (765)
110 PF09976 TPR_21: Tetratricopep 98.5 1.7E-06 3.6E-11 72.1 11.2 98 155-269 48-145 (145)
111 KOG1129|consensus 98.5 4.3E-07 9.3E-12 82.9 7.7 146 155-305 290-454 (478)
112 KOG1125|consensus 98.5 3.8E-06 8.3E-11 81.9 14.0 95 205-306 431-525 (579)
113 KOG4162|consensus 98.4 1.6E-06 3.6E-11 86.9 11.7 104 154-276 683-788 (799)
114 KOG2002|consensus 98.4 3.9E-06 8.4E-11 86.2 14.5 118 156-292 271-389 (1018)
115 PRK02603 photosystem I assembl 98.4 2.5E-06 5.5E-11 73.2 11.2 84 204-294 35-121 (172)
116 PF14559 TPR_19: Tetratricopep 98.4 7.9E-07 1.7E-11 63.6 6.7 67 165-250 1-67 (68)
117 COG5010 TadD Flp pilus assembl 98.4 7.1E-06 1.5E-10 73.0 13.3 97 205-308 101-197 (257)
118 PF06552 TOM20_plant: Plant sp 98.4 6E-06 1.3E-10 69.7 12.1 100 171-292 7-127 (186)
119 COG4785 NlpI Lipoprotein NlpI, 98.4 4.4E-06 9.4E-11 72.4 11.3 106 153-277 63-168 (297)
120 KOG1840|consensus 98.4 9.8E-06 2.1E-10 80.3 15.1 110 156-272 200-313 (508)
121 PRK14574 hmsH outer membrane p 98.4 7.3E-06 1.6E-10 86.3 14.9 152 154-314 33-203 (822)
122 COG1729 Uncharacterized protei 98.3 1.2E-05 2.6E-10 72.4 13.5 105 156-276 142-249 (262)
123 COG4235 Cytochrome c biogenesi 98.3 1.6E-05 3.5E-10 72.4 14.4 104 154-276 155-261 (287)
124 COG4783 Putative Zn-dependent 98.3 2.1E-05 4.5E-10 75.6 15.3 130 160-311 311-440 (484)
125 KOG2002|consensus 98.3 8.6E-06 1.9E-10 83.7 13.0 131 155-297 452-582 (1018)
126 PF13371 TPR_9: Tetratricopept 98.3 4.5E-06 9.7E-11 60.6 8.3 70 162-250 2-71 (73)
127 COG4783 Putative Zn-dependent 98.3 1.2E-05 2.5E-10 77.4 13.0 111 160-292 345-455 (484)
128 PF12688 TPR_5: Tetratrico pep 98.3 2.1E-05 4.5E-10 63.1 12.1 98 157-270 3-103 (120)
129 PRK10803 tol-pal system protei 98.3 1.3E-05 2.8E-10 73.4 12.3 104 205-313 143-250 (263)
130 KOG2076|consensus 98.2 1.6E-05 3.6E-10 81.1 13.3 102 153-272 412-513 (895)
131 KOG1130|consensus 98.2 1.7E-06 3.6E-11 81.3 5.6 116 150-274 190-307 (639)
132 PF14938 SNAP: Soluble NSF att 98.2 2E-05 4.4E-10 73.2 12.8 115 153-276 112-230 (282)
133 PF00515 TPR_1: Tetratricopept 98.2 2.2E-06 4.7E-11 52.4 4.2 34 242-275 1-34 (34)
134 PF12968 DUF3856: Domain of Un 98.2 0.00019 4E-09 56.3 15.6 111 158-271 12-129 (144)
135 PF13429 TPR_15: Tetratricopep 98.2 1.1E-05 2.5E-10 74.6 10.8 132 156-308 111-242 (280)
136 KOG1174|consensus 98.2 1.1E-05 2.3E-10 76.0 10.0 148 154-321 333-512 (564)
137 PF12895 Apc3: Anaphase-promot 98.2 4.2E-06 9.1E-11 62.7 5.9 76 217-300 2-79 (84)
138 KOG1128|consensus 98.2 8E-06 1.7E-10 81.7 9.4 114 158-293 488-601 (777)
139 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 3.5E-05 7.5E-10 74.3 13.2 68 153-232 73-140 (453)
140 PF14938 SNAP: Soluble NSF att 98.2 3.5E-05 7.5E-10 71.7 12.9 147 152-309 32-184 (282)
141 PF09976 TPR_21: Tetratricopep 98.2 0.00026 5.7E-09 58.8 17.0 133 151-304 7-142 (145)
142 PRK14574 hmsH outer membrane p 98.1 3.7E-05 8E-10 81.0 14.4 115 162-299 109-223 (822)
143 KOG1173|consensus 98.1 1.8E-05 3.8E-10 77.2 10.6 140 155-297 346-507 (611)
144 TIGR00540 hemY_coli hemY prote 98.1 0.00016 3.5E-09 70.8 17.6 124 151-296 80-204 (409)
145 PRK10747 putative protoheme IX 98.1 0.00017 3.6E-09 70.5 17.5 125 151-297 80-205 (398)
146 PRK14720 transcript cleavage f 98.1 5E-05 1.1E-09 79.7 14.2 130 154-305 30-174 (906)
147 cd05804 StaR_like StaR_like; a 98.1 3.6E-05 7.9E-10 73.6 12.2 100 155-273 114-217 (355)
148 PF07719 TPR_2: Tetratricopept 98.1 8.4E-06 1.8E-10 49.6 4.9 34 242-275 1-34 (34)
149 PF03704 BTAD: Bacterial trans 98.1 0.0002 4.3E-09 59.5 14.8 109 158-270 9-124 (146)
150 KOG4648|consensus 98.0 9.1E-06 2E-10 74.8 6.4 86 207-296 100-189 (536)
151 cd05804 StaR_like StaR_like; a 98.0 9E-05 2E-09 70.8 13.6 148 155-307 43-213 (355)
152 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 4.5E-05 9.7E-10 73.6 11.2 98 160-276 205-302 (395)
153 KOG1156|consensus 98.0 4.9E-05 1.1E-09 75.3 11.5 121 156-298 8-128 (700)
154 PRK10153 DNA-binding transcrip 98.0 0.0002 4.3E-09 72.0 15.7 118 154-276 338-487 (517)
155 PF12688 TPR_5: Tetratrico pep 98.0 0.00015 3.2E-09 58.1 11.8 97 205-302 2-98 (120)
156 COG2956 Predicted N-acetylgluc 98.0 0.00018 3.9E-09 66.0 13.3 141 153-299 105-269 (389)
157 PF13428 TPR_14: Tetratricopep 97.9 2.1E-05 4.5E-10 51.2 5.2 42 243-287 2-43 (44)
158 PF15015 NYD-SP12_N: Spermatog 97.9 0.00016 3.5E-09 68.4 12.8 114 153-270 174-290 (569)
159 KOG1129|consensus 97.9 8.1E-05 1.8E-09 68.3 10.4 98 159-276 227-324 (478)
160 KOG2003|consensus 97.9 0.00034 7.4E-09 66.8 14.6 76 210-292 632-707 (840)
161 COG4105 ComL DNA uptake lipopr 97.9 0.0011 2.5E-08 59.3 17.2 152 155-326 34-196 (254)
162 KOG4162|consensus 97.9 0.00016 3.4E-09 73.0 13.0 120 155-296 650-771 (799)
163 COG1729 Uncharacterized protei 97.9 0.00016 3.4E-09 65.3 11.4 103 207-314 144-249 (262)
164 COG4235 Cytochrome c biogenesi 97.9 0.00059 1.3E-08 62.4 14.9 116 205-328 157-275 (287)
165 KOG4151|consensus 97.9 6E-05 1.3E-09 76.4 9.1 113 149-276 47-161 (748)
166 PF13431 TPR_17: Tetratricopep 97.8 1.5E-05 3.2E-10 48.8 2.7 34 226-263 1-34 (34)
167 KOG1128|consensus 97.8 7.8E-05 1.7E-09 74.8 9.2 81 210-297 491-571 (777)
168 PF00515 TPR_1: Tetratricopept 97.8 2.9E-05 6.3E-10 47.3 4.0 33 205-241 2-34 (34)
169 KOG3060|consensus 97.8 0.00079 1.7E-08 59.9 14.3 128 159-293 90-239 (289)
170 PF14853 Fis1_TPR_C: Fis1 C-te 97.8 0.00011 2.4E-09 49.6 7.0 48 243-293 2-49 (53)
171 COG2956 Predicted N-acetylgluc 97.8 0.00058 1.3E-08 62.8 13.6 140 153-299 67-234 (389)
172 PF12569 NARP1: NMDA receptor- 97.8 0.0002 4.4E-09 71.6 11.5 85 204-295 194-278 (517)
173 KOG1130|consensus 97.8 0.0002 4.4E-09 67.6 10.4 109 155-272 235-345 (639)
174 TIGR00540 hemY_coli hemY prote 97.8 0.0012 2.7E-08 64.7 16.3 156 158-331 121-297 (409)
175 KOG4234|consensus 97.7 0.0002 4.3E-09 61.5 8.9 100 209-312 100-200 (271)
176 PF13181 TPR_8: Tetratricopept 97.7 6.9E-05 1.5E-09 45.5 4.4 33 243-275 2-34 (34)
177 KOG1174|consensus 97.7 0.00057 1.2E-08 64.7 12.4 136 155-297 232-386 (564)
178 COG4700 Uncharacterized protei 97.7 0.002 4.4E-08 54.9 13.9 118 154-293 88-207 (251)
179 PF13428 TPR_14: Tetratricopep 97.7 9.9E-05 2.1E-09 47.9 4.9 43 205-251 2-44 (44)
180 PRK10866 outer membrane biogen 97.7 0.001 2.2E-08 60.4 13.2 82 204-289 32-116 (243)
181 KOG1156|consensus 97.7 0.00066 1.4E-08 67.5 12.4 124 153-298 39-162 (700)
182 PRK10941 hypothetical protein; 97.6 0.00075 1.6E-08 61.9 11.7 84 202-289 179-262 (269)
183 KOG4642|consensus 97.6 0.00011 2.3E-09 64.7 5.7 85 209-300 15-99 (284)
184 PRK11906 transcriptional regul 97.6 0.00096 2.1E-08 64.6 12.7 83 204-293 295-386 (458)
185 PF13525 YfiO: Outer membrane 97.6 0.001 2.2E-08 58.6 12.1 85 204-289 5-89 (203)
186 PF04733 Coatomer_E: Coatomer 97.6 0.0003 6.4E-09 65.6 8.9 93 206-305 165-261 (290)
187 PRK10747 putative protoheme IX 97.5 0.0018 4E-08 63.2 14.0 124 157-307 265-388 (398)
188 PF04733 Coatomer_E: Coatomer 97.5 0.00066 1.4E-08 63.2 10.2 69 204-276 201-270 (290)
189 KOG3060|consensus 97.5 0.0049 1.1E-07 55.0 14.7 88 217-311 133-222 (289)
190 PF07719 TPR_2: Tetratricopept 97.5 0.0002 4.4E-09 43.3 4.4 33 205-241 2-34 (34)
191 PRK14720 transcript cleavage f 97.5 0.00061 1.3E-08 71.8 10.5 111 155-273 65-180 (906)
192 KOG0551|consensus 97.5 0.001 2.2E-08 61.3 10.5 83 204-287 81-168 (390)
193 KOG1127|consensus 97.5 0.001 2.3E-08 69.0 11.6 94 212-312 10-106 (1238)
194 PRK15331 chaperone protein Sic 97.5 0.00088 1.9E-08 56.2 9.1 96 205-308 38-133 (165)
195 KOG0495|consensus 97.5 0.0021 4.6E-08 64.2 12.9 166 157-330 586-786 (913)
196 KOG1127|consensus 97.4 0.00096 2.1E-08 69.3 10.4 86 207-299 565-650 (1238)
197 PF12569 NARP1: NMDA receptor- 97.4 0.0039 8.5E-08 62.5 14.7 55 243-300 195-249 (517)
198 PF13512 TPR_18: Tetratricopep 97.4 0.0022 4.7E-08 52.6 10.5 71 205-276 11-81 (142)
199 PF09295 ChAPs: ChAPs (Chs5p-A 97.4 0.0027 5.9E-08 61.4 12.8 107 168-299 182-288 (395)
200 KOG4555|consensus 97.4 0.0025 5.5E-08 51.1 10.3 64 209-276 48-111 (175)
201 KOG3785|consensus 97.3 0.0013 2.8E-08 61.3 9.4 104 164-292 31-134 (557)
202 PRK11906 transcriptional regul 97.3 0.0015 3.3E-08 63.3 10.4 69 204-276 338-406 (458)
203 COG2976 Uncharacterized protei 97.3 0.0048 1E-07 53.0 12.0 103 156-276 90-193 (207)
204 KOG1941|consensus 97.3 0.0025 5.4E-08 59.6 10.5 107 157-272 124-236 (518)
205 KOG3364|consensus 97.3 0.0032 6.9E-08 50.7 9.5 84 204-293 32-119 (149)
206 KOG4814|consensus 97.2 0.0048 1E-07 61.5 11.7 103 157-272 356-458 (872)
207 KOG0495|consensus 97.1 0.0093 2E-07 59.8 13.3 150 158-330 654-816 (913)
208 KOG4507|consensus 97.1 0.0025 5.4E-08 62.9 8.7 103 167-290 619-721 (886)
209 KOG1586|consensus 97.1 0.03 6.5E-07 49.5 14.4 106 160-276 118-229 (288)
210 PF10300 DUF3808: Protein of u 97.1 0.0068 1.5E-07 60.4 12.1 103 155-273 267-378 (468)
211 PF08631 SPO22: Meiosis protei 97.1 0.043 9.3E-07 50.8 16.6 121 151-273 31-152 (278)
212 KOG2796|consensus 97.1 0.019 4.2E-07 51.6 13.3 133 154-290 176-334 (366)
213 COG3118 Thioredoxin domain-con 97.0 0.16 3.5E-06 46.6 19.5 181 60-274 45-268 (304)
214 PF13174 TPR_6: Tetratricopept 97.0 0.0013 2.7E-08 39.3 3.9 32 244-275 2-33 (33)
215 PF06552 TOM20_plant: Plant sp 97.0 0.0059 1.3E-07 51.9 9.0 69 219-294 6-84 (186)
216 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.0031 6.7E-08 42.6 5.8 41 205-249 2-42 (53)
217 PF13181 TPR_8: Tetratricopept 96.9 0.0013 2.8E-08 39.7 3.6 33 205-241 2-34 (34)
218 COG4785 NlpI Lipoprotein NlpI, 96.9 0.0033 7.2E-08 54.9 6.9 71 202-276 63-133 (297)
219 smart00028 TPR Tetratricopepti 96.8 0.0018 3.9E-08 37.4 3.7 31 244-274 3-33 (34)
220 KOG4340|consensus 96.8 0.0049 1.1E-07 56.2 7.9 98 154-266 143-265 (459)
221 KOG0376|consensus 96.8 0.0027 5.9E-08 61.4 6.7 82 205-290 5-90 (476)
222 COG3071 HemY Uncharacterized e 96.8 0.073 1.6E-06 50.5 15.8 126 150-297 79-205 (400)
223 KOG3785|consensus 96.8 0.0056 1.2E-07 57.1 8.1 115 161-293 63-199 (557)
224 KOG0545|consensus 96.8 0.004 8.8E-08 55.2 6.8 73 204-276 178-264 (329)
225 PF13176 TPR_7: Tetratricopept 96.7 0.003 6.6E-08 38.9 4.2 25 245-269 2-26 (36)
226 PF10602 RPN7: 26S proteasome 96.7 0.021 4.6E-07 49.1 10.8 106 154-271 35-142 (177)
227 KOG2376|consensus 96.7 0.058 1.3E-06 53.6 14.7 94 159-270 83-203 (652)
228 PF13431 TPR_17: Tetratricopep 96.7 0.0017 3.7E-08 39.5 2.8 34 177-225 1-34 (34)
229 KOG3081|consensus 96.7 0.041 8.8E-07 49.6 12.5 149 157-312 110-274 (299)
230 KOG2053|consensus 96.7 0.042 9E-07 57.0 13.9 114 164-300 18-131 (932)
231 KOG1941|consensus 96.6 0.037 8E-07 52.0 11.9 144 154-297 5-180 (518)
232 PF13176 TPR_7: Tetratricopept 96.6 0.0042 9.2E-08 38.2 4.0 27 206-232 1-27 (36)
233 KOG2396|consensus 96.6 0.11 2.4E-06 50.8 15.2 99 171-291 87-186 (568)
234 COG0457 NrfG FOG: TPR repeat [ 96.5 0.071 1.5E-06 45.3 12.6 96 164-276 139-236 (291)
235 KOG3824|consensus 96.4 0.028 6.1E-07 51.6 9.8 77 204-287 116-192 (472)
236 COG0457 NrfG FOG: TPR repeat [ 96.4 0.18 4E-06 42.7 14.9 116 156-293 96-216 (291)
237 COG2912 Uncharacterized conser 96.4 0.037 8E-07 50.2 10.3 85 201-289 178-262 (269)
238 PF09986 DUF2225: Uncharacteri 96.3 0.058 1.3E-06 47.9 11.4 104 162-273 84-196 (214)
239 PF13374 TPR_10: Tetratricopep 96.3 0.0088 1.9E-07 37.6 4.6 34 204-237 2-35 (42)
240 COG4105 ComL DNA uptake lipopr 96.3 0.03 6.6E-07 50.3 9.2 72 204-276 34-105 (254)
241 PRK04841 transcriptional regul 96.3 0.12 2.5E-06 56.0 15.7 70 204-273 531-604 (903)
242 PF04184 ST7: ST7 protein; In 96.2 0.058 1.3E-06 52.8 11.5 159 170-337 215-386 (539)
243 PF14561 TPR_20: Tetratricopep 96.2 0.043 9.4E-07 41.5 8.5 66 223-295 7-74 (90)
244 COG4700 Uncharacterized protei 96.2 0.14 3.1E-06 43.9 12.2 104 204-311 89-207 (251)
245 PRK04841 transcriptional regul 96.2 0.051 1.1E-06 58.8 12.3 103 160-272 457-561 (903)
246 KOG1308|consensus 96.2 0.0018 4E-08 60.0 0.9 58 215-276 125-182 (377)
247 smart00028 TPR Tetratricopepti 96.2 0.011 2.4E-07 33.9 4.1 32 205-240 2-33 (34)
248 PRK10153 DNA-binding transcrip 96.1 0.1 2.2E-06 52.7 12.9 135 171-312 336-485 (517)
249 PF13174 TPR_6: Tetratricopept 96.0 0.0095 2.1E-07 35.4 3.4 31 206-240 2-32 (33)
250 PF10579 Rapsyn_N: Rapsyn N-te 95.9 0.1 2.2E-06 38.1 8.7 73 154-238 5-77 (80)
251 KOG2471|consensus 95.9 0.025 5.4E-07 55.0 7.2 125 155-288 240-378 (696)
252 KOG1586|consensus 95.9 0.62 1.3E-05 41.5 15.0 113 154-276 33-148 (288)
253 KOG2796|consensus 95.8 0.38 8.2E-06 43.6 13.8 95 203-300 211-307 (366)
254 PF06957 COPI_C: Coatomer (COP 95.8 0.11 2.3E-06 50.6 11.1 125 152-276 201-334 (422)
255 KOG2376|consensus 95.8 0.21 4.6E-06 49.8 13.0 114 156-276 13-144 (652)
256 PLN03081 pentatricopeptide (PP 95.7 0.15 3.3E-06 53.6 13.0 62 205-270 495-556 (697)
257 KOG1585|consensus 95.5 0.32 7E-06 43.5 11.9 134 161-308 116-251 (308)
258 PF12862 Apc5: Anaphase-promot 95.3 0.26 5.6E-06 37.5 9.7 69 164-238 7-75 (94)
259 KOG4340|consensus 95.3 0.34 7.4E-06 44.6 11.7 124 157-298 46-197 (459)
260 KOG1585|consensus 95.2 2.2 4.7E-05 38.4 16.3 114 153-275 29-143 (308)
261 PLN03218 maturation of RBCL 1; 95.2 0.53 1.1E-05 51.7 15.0 118 156-276 615-755 (1060)
262 COG4976 Predicted methyltransf 95.1 0.033 7.1E-07 49.1 4.7 61 212-276 3-63 (287)
263 KOG4507|consensus 95.0 0.16 3.4E-06 50.7 9.4 99 161-276 218-317 (886)
264 PLN03218 maturation of RBCL 1; 95.0 0.76 1.7E-05 50.5 15.6 26 156-181 543-568 (1060)
265 PLN03077 Protein ECB2; Provisi 94.7 0.58 1.3E-05 50.5 14.0 133 155-296 554-708 (857)
266 KOG1915|consensus 94.7 1.4 3.1E-05 43.2 14.8 137 146-306 60-200 (677)
267 PF10952 DUF2753: Protein of u 94.7 0.45 9.7E-06 37.8 9.4 84 157-240 3-86 (140)
268 PLN03081 pentatricopeptide (PP 94.5 0.39 8.4E-06 50.5 11.9 130 155-296 391-545 (697)
269 TIGR03504 FimV_Cterm FimV C-te 94.4 0.091 2E-06 33.9 4.3 31 245-276 2-32 (44)
270 KOG0549|consensus 94.4 0.039 8.5E-07 46.7 3.2 39 64-102 2-40 (188)
271 KOG2610|consensus 94.4 0.94 2E-05 42.5 12.3 103 156-276 104-209 (491)
272 PF12862 Apc5: Anaphase-promot 94.3 0.3 6.6E-06 37.1 7.9 62 214-275 8-74 (94)
273 KOG2114|consensus 94.3 1.4 3.1E-05 45.8 14.6 113 154-268 367-516 (933)
274 COG3071 HemY Uncharacterized e 94.3 1.6 3.4E-05 41.8 13.9 95 160-276 268-362 (400)
275 PF02259 FAT: FAT domain; Int 94.2 0.86 1.9E-05 43.1 12.6 72 200-275 248-342 (352)
276 PF04781 DUF627: Protein of un 94.1 0.6 1.3E-05 36.5 9.0 103 161-272 2-108 (111)
277 KOG4814|consensus 94.0 0.35 7.5E-06 48.8 9.2 75 202-276 352-428 (872)
278 KOG3081|consensus 93.9 1.2 2.6E-05 40.5 11.8 69 204-276 207-276 (299)
279 PF13374 TPR_10: Tetratricopep 93.9 0.13 2.9E-06 32.0 4.5 30 243-272 3-32 (42)
280 KOG2300|consensus 93.9 1.8 3.8E-05 42.6 13.6 93 161-272 373-475 (629)
281 KOG0686|consensus 93.8 0.35 7.5E-06 46.3 8.6 101 157-269 152-256 (466)
282 KOG1915|consensus 93.8 1.8 3.9E-05 42.4 13.4 56 214-273 447-502 (677)
283 COG3629 DnrI DNA-binding trans 93.8 0.69 1.5E-05 42.6 10.3 73 195-271 144-216 (280)
284 PF10516 SHNi-TPR: SHNi-TPR; 93.6 0.14 3.1E-06 31.8 3.9 30 243-272 2-31 (38)
285 PF03704 BTAD: Bacterial trans 93.6 0.67 1.4E-05 38.1 9.2 65 154-233 61-125 (146)
286 PF10300 DUF3808: Protein of u 93.6 0.93 2E-05 45.3 11.8 73 204-276 267-339 (468)
287 KOG2471|consensus 93.4 0.12 2.6E-06 50.5 4.8 93 157-254 285-381 (696)
288 PF08631 SPO22: Meiosis protei 93.3 6.7 0.00015 36.2 16.4 105 165-276 3-121 (278)
289 KOG1070|consensus 93.2 2.6 5.7E-05 46.5 14.7 102 150-274 1495-1596(1710)
290 KOG1070|consensus 93.0 1.7 3.8E-05 47.8 13.1 77 205-288 1565-1643(1710)
291 COG3947 Response regulator con 93.0 1.4 3.1E-05 40.5 10.7 71 194-268 269-339 (361)
292 PLN03077 Protein ECB2; Provisi 92.9 1.8 3.9E-05 46.7 13.7 111 159-276 528-658 (857)
293 PF05843 Suf: Suppressor of fo 92.9 1.4 3.1E-05 40.7 11.2 114 161-293 7-121 (280)
294 PF09986 DUF2225: Uncharacteri 92.8 0.85 1.8E-05 40.5 9.1 43 204-251 165-209 (214)
295 PF04184 ST7: ST7 protein; In 92.4 1.6 3.4E-05 43.1 10.9 57 242-299 259-315 (539)
296 KOG3824|consensus 92.2 0.58 1.3E-05 43.3 7.3 79 155-252 116-194 (472)
297 KOG3364|consensus 92.1 1.3 2.9E-05 35.9 8.5 41 204-248 71-111 (149)
298 PF05843 Suf: Suppressor of fo 92.0 2.8 6.1E-05 38.8 12.0 99 206-312 3-102 (280)
299 PF07079 DUF1347: Protein of u 91.8 8.1 0.00018 37.9 14.8 74 211-292 469-543 (549)
300 COG5191 Uncharacterized conser 91.8 0.42 9.1E-06 44.2 5.9 78 204-288 107-185 (435)
301 PF10255 Paf67: RNA polymerase 91.5 3.1 6.7E-05 40.5 11.9 68 202-274 162-231 (404)
302 KOG0292|consensus 91.5 3.8 8.3E-05 43.1 12.9 120 152-276 988-1118(1202)
303 PF12968 DUF3856: Domain of Un 91.4 2.6 5.5E-05 33.6 9.1 74 155-232 55-128 (144)
304 cd02682 MIT_AAA_Arch MIT: doma 91.2 2.7 5.9E-05 30.5 8.5 37 152-188 3-39 (75)
305 PF02259 FAT: FAT domain; Int 91.0 5.2 0.00011 37.7 13.1 129 153-295 144-308 (352)
306 PRK13184 pknD serine/threonine 91.0 3.8 8.3E-05 44.2 13.0 114 156-289 476-596 (932)
307 PF09613 HrpB1_HrpK: Bacterial 90.5 3.8 8.2E-05 34.4 10.0 84 204-294 10-93 (160)
308 KOG2053|consensus 89.9 2.3 5E-05 44.7 9.9 97 160-276 48-144 (932)
309 PF04212 MIT: MIT (microtubule 89.6 3.8 8.2E-05 29.0 8.2 37 152-188 2-38 (69)
310 PF07720 TPR_3: Tetratricopept 89.5 1.2 2.7E-05 27.3 4.8 33 243-275 2-36 (36)
311 COG3118 Thioredoxin domain-con 89.4 4.4 9.5E-05 37.5 10.2 55 209-267 139-193 (304)
312 COG2976 Uncharacterized protei 89.4 6.8 0.00015 34.0 10.8 141 161-310 37-189 (207)
313 cd02681 MIT_calpain7_1 MIT: do 89.2 4.8 0.0001 29.3 8.5 35 153-187 4-38 (76)
314 cd02683 MIT_1 MIT: domain cont 89.1 3.8 8.2E-05 29.9 8.0 36 153-188 4-39 (77)
315 cd02678 MIT_VPS4 MIT: domain c 89.0 4.3 9.4E-05 29.3 8.3 37 152-188 3-39 (75)
316 PF10602 RPN7: 26S proteasome 88.9 10 0.00022 32.5 11.8 68 204-273 36-104 (177)
317 PRK10941 hypothetical protein; 88.6 4.6 0.0001 37.1 10.1 76 158-252 184-259 (269)
318 KOG1550|consensus 88.5 8.2 0.00018 39.5 12.9 92 159-273 292-395 (552)
319 cd02677 MIT_SNX15 MIT: domain 88.5 4.3 9.3E-05 29.5 7.9 36 152-187 3-38 (75)
320 cd02684 MIT_2 MIT: domain cont 88.2 4.5 9.8E-05 29.3 7.8 36 152-187 3-38 (75)
321 PHA02537 M terminase endonucle 88.1 9.5 0.00021 34.1 11.4 120 166-294 94-226 (230)
322 PF07721 TPR_4: Tetratricopept 87.8 0.79 1.7E-05 25.7 2.9 23 244-266 3-25 (26)
323 PF04910 Tcf25: Transcriptiona 87.8 4.5 9.7E-05 38.9 9.9 73 204-276 40-138 (360)
324 PF10516 SHNi-TPR: SHNi-TPR; 87.4 1.5 3.3E-05 27.2 4.3 31 205-235 2-32 (38)
325 PF10373 EST1_DNA_bind: Est1 D 87.2 2 4.4E-05 39.2 7.0 62 223-291 1-62 (278)
326 COG4976 Predicted methyltransf 86.5 1.4 2.9E-05 39.3 5.0 60 163-241 3-62 (287)
327 PF11817 Foie-gras_1: Foie gra 86.0 11 0.00025 34.0 11.1 88 173-269 156-245 (247)
328 PF11817 Foie-gras_1: Foie gra 85.8 4.8 0.0001 36.5 8.5 65 158-231 181-245 (247)
329 cd02656 MIT MIT: domain contai 85.7 9.6 0.00021 27.4 8.6 37 152-188 3-39 (75)
330 KOG3617|consensus 85.7 25 0.00055 37.2 14.1 81 150-230 1081-1171(1416)
331 PF10255 Paf67: RNA polymerase 85.6 1.6 3.4E-05 42.4 5.5 62 209-270 127-192 (404)
332 KOG2047|consensus 85.6 48 0.001 34.2 16.3 140 155-297 248-443 (835)
333 smart00745 MIT Microtubule Int 85.2 12 0.00026 27.0 9.0 37 152-188 5-41 (77)
334 PF14561 TPR_20: Tetratricopep 84.9 13 0.00027 28.0 9.1 49 204-256 22-72 (90)
335 PF13281 DUF4071: Domain of un 84.4 8.5 0.00018 37.1 9.7 68 205-275 180-259 (374)
336 PF10345 Cohesin_load: Cohesin 84.4 48 0.001 34.3 16.1 114 153-276 57-175 (608)
337 PF07721 TPR_4: Tetratricopept 84.3 1.5 3.3E-05 24.5 2.9 24 205-228 2-25 (26)
338 COG3914 Spy Predicted O-linked 83.8 19 0.00042 36.4 12.0 79 204-289 101-186 (620)
339 COG3898 Uncharacterized membra 83.5 19 0.00042 34.7 11.4 121 161-306 269-389 (531)
340 COG4455 ImpE Protein of avirul 83.4 14 0.0003 32.9 9.7 61 212-276 9-69 (273)
341 KOG2300|consensus 83.3 40 0.00087 33.6 13.6 123 167-291 287-416 (629)
342 PF10345 Cohesin_load: Cohesin 83.2 24 0.00051 36.6 13.3 112 155-266 301-428 (608)
343 KOG1464|consensus 82.7 20 0.00044 32.9 10.7 129 160-291 150-282 (440)
344 KOG2610|consensus 82.5 7.2 0.00016 36.8 8.0 53 205-261 176-228 (491)
345 cd02679 MIT_spastin MIT: domai 82.5 17 0.00037 26.7 8.8 66 152-217 5-76 (79)
346 KOG1497|consensus 82.3 24 0.00052 33.1 11.2 91 200-298 99-199 (399)
347 KOG2047|consensus 81.3 11 0.00025 38.5 9.4 105 157-274 513-618 (835)
348 PF15015 NYD-SP12_N: Spermatog 81.2 20 0.00043 34.9 10.6 87 211-300 183-283 (569)
349 COG3898 Uncharacterized membra 80.9 27 0.00059 33.7 11.3 70 201-275 227-296 (531)
350 PF04781 DUF627: Protein of un 80.8 19 0.00041 28.3 8.7 84 210-300 2-99 (111)
351 KOG2581|consensus 80.6 7.4 0.00016 37.5 7.6 71 204-276 209-281 (493)
352 TIGR02561 HrpB1_HrpK type III 80.5 19 0.00041 29.9 9.0 82 206-294 12-93 (153)
353 cd02680 MIT_calpain7_2 MIT: do 80.1 3.9 8.4E-05 29.7 4.4 35 153-187 4-38 (75)
354 PF13281 DUF4071: Domain of un 79.7 37 0.00079 32.8 12.1 104 204-310 141-256 (374)
355 TIGR03504 FimV_Cterm FimV C-te 79.2 3.4 7.4E-05 26.6 3.5 26 207-232 2-27 (44)
356 KOG1839|consensus 79.1 19 0.00041 39.8 10.9 135 153-295 930-1073(1236)
357 KOG1550|consensus 77.7 11 0.00023 38.6 8.5 102 154-271 243-357 (552)
358 KOG1310|consensus 77.6 7.4 0.00016 38.9 6.8 76 217-299 387-465 (758)
359 cd02682 MIT_AAA_Arch MIT: doma 77.5 14 0.0003 26.8 6.6 15 262-276 33-47 (75)
360 PF09613 HrpB1_HrpK: Bacterial 77.4 42 0.00092 28.2 14.5 113 154-290 9-121 (160)
361 PF10373 EST1_DNA_bind: Est1 D 77.1 9.8 0.00021 34.6 7.4 62 174-254 1-62 (278)
362 PF14863 Alkyl_sulf_dimr: Alky 76.9 13 0.00029 30.5 7.3 46 207-256 73-118 (141)
363 COG3914 Spy Predicted O-linked 76.5 28 0.00061 35.3 10.5 73 210-289 73-146 (620)
364 COG0790 FOG: TPR repeat, SEL1 76.4 62 0.0014 29.6 13.7 107 155-286 109-230 (292)
365 KOG3617|consensus 75.8 17 0.00037 38.4 9.0 67 205-271 913-996 (1416)
366 TIGR02710 CRISPR-associated pr 75.8 62 0.0013 31.4 12.4 64 155-228 130-195 (380)
367 COG2909 MalT ATP-dependent tra 75.1 27 0.00058 37.2 10.3 87 160-256 463-551 (894)
368 KOG1839|consensus 73.8 43 0.00094 37.2 11.9 137 153-296 971-1116(1236)
369 PF11207 DUF2989: Protein of u 73.4 63 0.0014 28.3 11.9 56 205-261 142-197 (203)
370 COG0790 FOG: TPR repeat, SEL1 72.7 33 0.00071 31.5 9.8 89 161-272 47-143 (292)
371 COG3947 Response regulator con 72.7 9.4 0.0002 35.3 5.7 51 242-295 279-329 (361)
372 PF14863 Alkyl_sulf_dimr: Alky 72.6 9.2 0.0002 31.5 5.3 53 241-296 69-121 (141)
373 KOG2041|consensus 72.3 18 0.00039 37.5 8.1 29 239-267 849-877 (1189)
374 PF07720 TPR_3: Tetratricopept 72.0 12 0.00025 22.9 4.3 31 207-241 4-36 (36)
375 COG2909 MalT ATP-dependent tra 71.9 65 0.0014 34.4 12.2 109 160-274 420-529 (894)
376 PF00244 14-3-3: 14-3-3 protei 71.9 20 0.00043 32.3 7.7 56 170-232 141-197 (236)
377 PF10579 Rapsyn_N: Rapsyn N-te 71.3 27 0.00059 25.6 6.8 58 210-271 12-72 (80)
378 PF09670 Cas_Cas02710: CRISPR- 71.0 88 0.0019 30.3 12.5 67 153-232 129-197 (379)
379 PF08626 TRAPPC9-Trs120: Trans 70.0 69 0.0015 36.2 13.0 145 152-298 239-464 (1185)
380 PF15469 Sec5: Exocyst complex 70.0 24 0.00051 30.2 7.6 26 163-188 94-119 (182)
381 PF07079 DUF1347: Protein of u 69.9 36 0.00077 33.6 9.2 60 155-230 462-521 (549)
382 PF09205 DUF1955: Domain of un 69.6 41 0.00089 27.5 8.1 34 238-271 116-149 (161)
383 COG4941 Predicted RNA polymera 68.5 37 0.00081 32.1 8.7 66 206-276 331-399 (415)
384 PF08424 NRDE-2: NRDE-2, neces 66.9 41 0.00088 31.7 9.1 102 204-312 19-134 (321)
385 COG5159 RPN6 26S proteasome re 66.8 88 0.0019 29.1 10.6 26 159-184 7-32 (421)
386 smart00386 HAT HAT (Half-A-TPR 66.4 16 0.00035 20.5 4.2 29 256-287 1-29 (33)
387 PF04053 Coatomer_WDAD: Coatom 65.1 64 0.0014 32.1 10.4 32 239-270 344-375 (443)
388 KOG3616|consensus 64.7 39 0.00085 35.4 8.7 46 217-268 745-791 (1636)
389 cd02681 MIT_calpain7_1 MIT: do 64.4 38 0.00082 24.6 6.5 28 206-233 8-35 (76)
390 cd02683 MIT_1 MIT: domain cont 63.8 53 0.0011 23.8 7.2 15 262-276 33-47 (77)
391 cd09034 BRO1_Alix_like Protein 63.7 71 0.0015 30.3 10.3 27 244-270 253-279 (345)
392 KOG3783|consensus 62.7 78 0.0017 31.9 10.2 76 155-248 267-342 (546)
393 KOG3783|consensus 61.3 97 0.0021 31.2 10.6 71 206-276 451-525 (546)
394 PRK13184 pknD serine/threonine 61.1 1.3E+02 0.0027 33.0 12.3 80 206-291 554-640 (932)
395 COG3629 DnrI DNA-binding trans 61.1 46 0.001 30.8 8.0 64 154-232 152-215 (280)
396 KOG2041|consensus 61.1 1.8E+02 0.0039 30.6 12.5 75 203-296 795-869 (1189)
397 PF10952 DUF2753: Protein of u 60.6 69 0.0015 25.8 7.6 68 207-274 4-86 (140)
398 KOG3807|consensus 60.5 1.4E+02 0.0031 28.4 10.9 63 204-270 275-339 (556)
399 KOG0985|consensus 60.0 87 0.0019 34.3 10.4 112 157-294 1196-1328(1666)
400 PF04910 Tcf25: Transcriptiona 59.8 1.1E+02 0.0023 29.6 10.6 103 155-274 103-225 (360)
401 KOG0276|consensus 58.7 38 0.00082 34.6 7.3 31 154-184 665-695 (794)
402 cd02679 MIT_spastin MIT: domai 58.2 71 0.0015 23.4 7.4 13 220-232 5-17 (79)
403 KOG1463|consensus 57.5 1.2E+02 0.0027 28.9 10.0 114 159-291 213-330 (411)
404 KOG1463|consensus 56.9 1.8E+02 0.004 27.7 13.0 74 198-271 122-197 (411)
405 KOG2758|consensus 56.5 84 0.0018 29.7 8.7 72 204-275 129-200 (432)
406 KOG2561|consensus 56.4 97 0.0021 30.5 9.3 116 151-270 159-295 (568)
407 PF04190 DUF410: Protein of un 56.4 1.6E+02 0.0035 26.8 12.5 104 155-268 10-116 (260)
408 PRK15180 Vi polysaccharide bio 55.2 30 0.00065 34.4 5.8 57 214-274 367-423 (831)
409 KOG1464|consensus 54.7 1E+02 0.0022 28.4 8.8 117 146-271 48-174 (440)
410 COG2912 Uncharacterized conser 54.5 53 0.0012 30.1 7.1 71 161-250 187-257 (269)
411 PRK05753 nucleoside diphosphat 54.2 75 0.0016 25.9 7.4 25 69-93 90-114 (137)
412 smart00745 MIT Microtubule Int 53.9 40 0.00086 24.1 5.2 12 263-274 36-47 (77)
413 cd09240 BRO1_Alix Protein-inte 53.7 2E+02 0.0044 27.4 11.4 27 244-270 257-283 (346)
414 PF12854 PPR_1: PPR repeat 53.3 36 0.00077 20.2 4.1 27 241-267 6-32 (34)
415 KOG3540|consensus 52.8 2.5E+02 0.0054 28.0 12.7 124 156-292 268-400 (615)
416 PF11846 DUF3366: Domain of un 52.2 56 0.0012 28.1 6.8 52 220-276 127-178 (193)
417 smart00671 SEL1 Sel1-like repe 52.1 38 0.00083 19.6 4.2 28 243-270 2-33 (36)
418 PF04010 DUF357: Protein of un 51.9 55 0.0012 23.7 5.5 39 147-185 27-65 (75)
419 PF08424 NRDE-2: NRDE-2, neces 51.9 2.1E+02 0.0046 26.9 14.8 60 210-273 71-133 (321)
420 PF04212 MIT: MIT (microtubule 51.1 63 0.0014 22.6 5.8 21 210-230 11-31 (69)
421 KOG2396|consensus 50.9 2.8E+02 0.006 28.0 13.8 87 220-313 87-173 (568)
422 PF11207 DUF2989: Protein of u 50.3 1.8E+02 0.0038 25.6 14.4 74 220-297 122-196 (203)
423 PF01535 PPR: PPR repeat; Int 49.1 29 0.00063 19.2 3.2 25 207-231 3-27 (31)
424 PF08238 Sel1: Sel1 repeat; I 48.5 37 0.0008 20.2 3.8 29 243-271 2-37 (39)
425 KOG0889|consensus 47.7 3E+02 0.0066 34.5 13.1 87 200-294 2808-2902(3550)
426 cd09243 BRO1_Brox_like Protein 47.5 2.7E+02 0.0057 26.8 11.5 35 151-185 105-151 (353)
427 PRK00226 greA transcription el 47.3 43 0.00094 27.9 5.1 25 70-94 122-146 (157)
428 PF08969 USP8_dimer: USP8 dime 47.3 57 0.0012 25.5 5.5 44 146-189 29-72 (115)
429 smart00101 14_3_3 14-3-3 homol 46.7 97 0.0021 28.1 7.5 55 171-232 144-199 (244)
430 COG1747 Uncharacterized N-term 46.1 3.4E+02 0.0073 27.6 12.2 83 205-296 67-149 (711)
431 KOG0985|consensus 46.0 1.1E+02 0.0023 33.7 8.5 67 146-232 1095-1161(1666)
432 PF09797 NatB_MDM20: N-acetylt 45.1 1.2E+02 0.0025 29.2 8.4 48 217-268 196-243 (365)
433 cd09241 BRO1_ScRim20-like Prot 44.5 2.4E+02 0.0052 27.0 10.4 27 244-270 239-265 (355)
434 COG1747 Uncharacterized N-term 44.3 3.5E+02 0.0077 27.5 11.2 58 214-275 215-292 (711)
435 COG5159 RPN6 26S proteasome re 44.3 2.7E+02 0.0059 26.0 10.2 74 198-271 119-194 (421)
436 PF04053 Coatomer_WDAD: Coatom 44.2 1.6E+02 0.0035 29.2 9.3 27 205-231 348-374 (443)
437 TIGR01462 greA transcription e 43.8 56 0.0012 27.1 5.2 26 69-94 116-141 (151)
438 KOG2709|consensus 43.1 2.3E+02 0.005 27.8 9.6 28 205-232 23-50 (560)
439 PF13812 PPR_3: Pentatricopept 43.1 49 0.0011 18.8 3.6 26 206-231 3-28 (34)
440 KOG2422|consensus 42.5 4E+02 0.0087 27.4 11.8 115 159-276 239-377 (665)
441 PRK15180 Vi polysaccharide bio 42.0 2.8E+02 0.006 27.9 10.1 129 162-313 296-424 (831)
442 TIGR00756 PPR pentatricopeptid 41.9 55 0.0012 18.4 3.7 26 207-232 3-28 (35)
443 COG4649 Uncharacterized protei 41.2 2.4E+02 0.0051 24.4 12.3 101 156-270 95-195 (221)
444 KOG0739|consensus 41.0 1E+02 0.0022 29.0 6.6 36 152-187 7-42 (439)
445 PRK05892 nucleoside diphosphat 40.7 63 0.0014 27.1 5.1 25 70-94 121-145 (158)
446 TIGR01461 greB transcription e 40.6 75 0.0016 26.6 5.5 25 70-94 119-143 (156)
447 KOG0686|consensus 40.6 3.7E+02 0.0079 26.4 10.8 105 204-311 150-261 (466)
448 cd02656 MIT MIT: domain contai 39.6 89 0.0019 22.2 5.2 10 265-274 36-45 (75)
449 COG4649 Uncharacterized protei 39.1 84 0.0018 27.1 5.4 50 201-255 164-213 (221)
450 cd00280 TRFH Telomeric Repeat 38.7 2.5E+02 0.0054 24.4 8.2 19 213-231 120-138 (200)
451 KOG0546|consensus 38.6 20 0.00044 34.0 1.9 51 204-258 309-359 (372)
452 KOG2581|consensus 38.5 4E+02 0.0086 26.2 10.9 108 153-276 245-354 (493)
453 KOG0530|consensus 37.6 2.1E+02 0.0046 26.4 8.0 85 206-297 79-165 (318)
454 PF01272 GreA_GreB: Transcript 37.1 51 0.0011 23.7 3.5 24 70-93 42-65 (77)
455 KOG4459|consensus 37.0 2.4E+02 0.0052 27.9 8.8 44 243-289 134-177 (471)
456 PRK15326 type III secretion sy 36.0 1.6E+02 0.0034 21.7 5.7 35 255-292 20-54 (80)
457 KOG0529|consensus 35.9 4.3E+02 0.0094 25.9 10.9 79 204-289 109-193 (421)
458 cd02678 MIT_VPS4 MIT: domain c 35.1 1.7E+02 0.0036 20.9 6.6 12 263-274 34-45 (75)
459 PF12753 Nro1: Nuclear pore co 34.7 44 0.00095 32.4 3.5 36 174-219 330-365 (404)
460 KOG4563|consensus 34.5 1.4E+02 0.003 28.7 6.6 37 151-187 37-73 (400)
461 cd09247 BRO1_Alix_like_2 Prote 34.4 4.2E+02 0.009 25.3 10.5 28 244-271 255-282 (346)
462 PF10938 YfdX: YfdX protein; 33.9 1.8E+02 0.0039 24.2 6.8 73 153-232 73-145 (155)
463 PF15469 Sec5: Exocyst complex 32.8 1.6E+02 0.0035 25.0 6.5 46 252-297 96-142 (182)
464 COG5091 SGT1 Suppressor of G2 31.8 1.6E+02 0.0035 27.1 6.3 58 219-276 54-113 (368)
465 PF02064 MAS20: MAS20 protein 31.6 1.2E+02 0.0027 24.1 5.1 34 154-187 62-95 (121)
466 PF13041 PPR_2: PPR repeat fam 31.6 1.4E+02 0.003 18.9 6.4 28 205-232 4-31 (50)
467 COG1849 Uncharacterized protei 31.6 1.9E+02 0.0041 21.7 5.6 39 147-185 33-71 (90)
468 PF10938 YfdX: YfdX protein; 31.3 2.9E+02 0.0064 23.0 7.6 114 157-270 4-145 (155)
469 KOG4563|consensus 31.1 87 0.0019 30.0 4.7 60 207-266 44-107 (400)
470 PRK11619 lytic murein transgly 31.1 3.8E+02 0.0083 28.1 10.0 54 213-270 321-374 (644)
471 KOG2582|consensus 30.8 85 0.0018 30.1 4.6 103 157-270 104-211 (422)
472 KOG0890|consensus 30.6 1.1E+03 0.023 28.9 14.8 88 171-272 1645-1732(2382)
473 cd02677 MIT_SNX15 MIT: domain 30.5 2.1E+02 0.0045 20.6 6.3 14 256-269 20-33 (75)
474 KOG0739|consensus 30.0 2.1E+02 0.0045 27.0 6.8 16 260-275 35-50 (439)
475 PLN00122 serine/threonine prot 29.9 3.5E+02 0.0076 23.0 8.1 88 212-307 73-160 (170)
476 KOG2114|consensus 29.5 3.3E+02 0.0071 29.3 8.9 35 204-241 368-402 (933)
477 KOG0529|consensus 29.5 5.5E+02 0.012 25.2 12.6 73 214-293 85-159 (421)
478 cd08977 SusD starch binding ou 29.4 4.9E+02 0.011 24.5 11.1 52 220-271 141-210 (359)
479 PF14689 SPOB_a: Sensor_kinase 28.5 1.2E+02 0.0026 20.8 4.1 21 212-232 31-51 (62)
480 COG0782 Uncharacterized conser 28.3 2E+02 0.0043 23.9 6.0 24 69-92 114-137 (151)
481 KOG1920|consensus 28.2 3.9E+02 0.0083 30.0 9.4 25 207-231 955-979 (1265)
482 KOG4521|consensus 27.1 5.4E+02 0.012 29.0 10.1 117 156-276 921-1051(1480)
483 cd00280 TRFH Telomeric Repeat 27.1 1.4E+02 0.0031 25.9 4.9 65 220-291 85-156 (200)
484 PF08311 Mad3_BUB1_I: Mad3/BUB 27.0 3.2E+02 0.007 21.7 10.5 86 169-269 40-126 (126)
485 PF09122 DUF1930: Domain of un 27.0 96 0.0021 21.5 3.1 35 60-94 20-57 (68)
486 KOG1258|consensus 26.8 7.2E+02 0.016 25.6 14.8 154 154-311 296-472 (577)
487 PF02064 MAS20: MAS20 protein 26.3 1.5E+02 0.0032 23.7 4.7 27 248-274 69-95 (121)
488 PF10475 DUF2450: Protein of u 26.0 5.3E+02 0.011 23.8 10.3 32 154-185 126-157 (291)
489 PF12753 Nro1: Nuclear pore co 25.9 1.1E+02 0.0023 29.8 4.4 33 220-258 334-366 (404)
490 PF02184 HAT: HAT (Half-A-TPR) 25.9 1.5E+02 0.0032 17.7 3.5 26 219-249 2-27 (32)
491 PF01239 PPTA: Protein prenylt 25.8 1.4E+02 0.003 17.0 3.5 25 224-252 3-27 (31)
492 COG5107 RNA14 Pre-mRNA 3'-end 25.7 2.6E+02 0.0056 27.9 7.0 58 205-269 303-360 (660)
493 cd02680 MIT_calpain7_2 MIT: do 25.5 1.4E+02 0.003 21.6 4.0 19 214-232 16-34 (75)
494 KOG1258|consensus 25.0 7.7E+02 0.017 25.4 14.7 75 211-290 407-486 (577)
495 PF14762 HPS3_Mid: Hermansky-P 24.8 6.1E+02 0.013 24.6 9.3 80 148-231 231-312 (374)
496 KOG1920|consensus 24.5 1.1E+03 0.023 26.8 13.7 93 157-268 954-1052(1265)
497 TIGR02561 HrpB1_HrpK type III 23.9 4.3E+02 0.0093 22.1 12.8 83 157-259 12-95 (153)
498 PF07163 Pex26: Pex26 protein; 23.9 6E+02 0.013 23.7 15.3 114 158-276 38-151 (309)
499 cd07642 BAR_ASAP2 The Bin/Amph 23.9 5.1E+02 0.011 22.9 10.2 98 205-308 26-125 (215)
500 KOG3616|consensus 23.5 3.8E+02 0.0083 28.6 8.0 23 208-230 710-732 (1636)
No 1
>KOG0543|consensus
Probab=100.00 E-value=7e-51 Score=375.47 Aligned_cols=275 Identities=27% Similarity=0.383 Sum_probs=253.3
Q ss_pred CCcEEEEEEecCCCC--CCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCC-CccchHHHHHhccCCCCcEEEE
Q psy8368 13 DGKLMKKIKEKGFGE--NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGS-SGLIPAFEYAILSMQKGEKSDF 89 (372)
Q Consensus 13 d~~i~k~il~~G~g~--~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~-~~~~~~le~~l~~m~~Ge~~~~ 89 (372)
||+|+|+|+++|.|+ .|..|..|++||++.+.++ +|+++. - ++.|.+|+ .+++.||+.||.+|++||++.|
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~--~f~~~~---~-~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v 156 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG--VFDQRE---L-RFEFGEGEDIDVIEGLEIALRMMKVGEVALV 156 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc--ceeccc---c-ceEEecCCccchhHHHHHHHHhcCccceEEE
Confidence 999999999999993 4999999999999999875 777752 2 67888888 5899999999999999999999
Q ss_pred EecCCCccC-CCCCCCCCCCCCcEEEEEEEEeeecCccccccccccccccccCccCchhHHHHHHHHHHHHHhhHHHHhc
Q psy8368 90 FASYELCFG-ALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFND 168 (372)
Q Consensus 90 ~i~~~~~yg-~~g~~~~ip~~~~~~~~iel~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~k~~Gn~~~~~ 168 (372)
+|+|.|+|| ..++++.||||++|.|+|+|++|. .+ -+.+|.|... +++..+...++.||.+|+.
T Consensus 157 ~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~-~~--------~~~s~~~~~~------e~l~~A~~~ke~Gn~~fK~ 221 (397)
T KOG0543|consen 157 TIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFE-LK--------EDESWKMFAE------ERLEAADRKKERGNVLFKE 221 (397)
T ss_pred EeCcccccCCCCCCCCCCCCCceEEEEEEEEeee-cC--------cccccccchH------HHHHHHHHHHHhhhHHHhh
Confidence 999999999 566788999999999999999998 21 1236666543 4799999999999999999
Q ss_pred cCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHH
Q psy8368 169 KNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVW 248 (372)
Q Consensus 169 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~ 248 (372)
|+|..|...|.+|+.++++....++++......++..||+|+|.||+|+++|..|+..|+++|. ++|+|+||+||+
T Consensus 222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe----~~~~N~KALyRr 297 (397)
T KOG0543|consen 222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE----LDPNNVKALYRR 297 (397)
T ss_pred chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh----cCCCchhHHHHH
Confidence 9999999999999999999888888899999999999999999999999999999999999998 999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc
Q psy8368 249 GKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSSPSQ 315 (372)
Q Consensus 249 a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (372)
|+||+.+|+|+.|+.+|++|++++|+|. +++.+|..|+++++.+..+++++|.+||.+....++
T Consensus 298 G~A~l~~~e~~~A~~df~ka~k~~P~Nk---a~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~~~ 361 (397)
T KOG0543|consen 298 GQALLALGEYDLARDDFQKALKLEPSNK---AARAELIKLKQKIREYEEKEKKMYANMFAKLAEESA 361 (397)
T ss_pred HHHHHhhccHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 9999999999999999999999999999 999999999999999999999999999999887643
No 2
>KOG0545|consensus
Probab=100.00 E-value=2.4e-36 Score=260.22 Aligned_cols=278 Identities=21% Similarity=0.290 Sum_probs=239.3
Q ss_pred CCCcEEEEEEecCCCCCC--CCCCEEEEEEEEEEcC-CceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEE
Q psy8368 12 QDGKLMKKIKEKGFGENP--VLGAHVQVHYMYYAEA-NELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSD 88 (372)
Q Consensus 12 ~d~~i~k~il~~G~g~~~--~~g~~V~v~y~~~~~~-~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~ 88 (372)
.-.|+.|+|+..|.|..| .+|+.|+|||....-+ .++++|+|+.-+. |.++++|...-+|.||..|.+|.++|++.
T Consensus 8 ~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gk-PmeiiiGkkFkL~VwE~il~tM~v~Evaq 86 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGK-PMEIIIGKKFKLEVWEIILTTMRVHEVAQ 86 (329)
T ss_pred cchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCC-CeEEeeccccccHHHHHHHHHHhhhhHHH
Confidence 346899999999999875 5899999999986543 3569999998888 99999999889999999999999999999
Q ss_pred EEecCC----------------------------------CccCCCCCC---CCCCCCCcEEEEEEEEeeecCccccccc
Q psy8368 89 FFASYE----------------------------------LCFGALGCP---PRIPAKADLLFEVHLINFSIDPQVVRSS 131 (372)
Q Consensus 89 ~~i~~~----------------------------------~~yg~~g~~---~~ip~~~~~~~~iel~~~~~~~~~~~~~ 131 (372)
|+|... .+|...|.. .......+++|.|++..|. .+.. +
T Consensus 87 F~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe-~P~q---Y 162 (329)
T KOG0545|consen 87 FWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVE-APSQ---Y 162 (329)
T ss_pred hhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhcc-Cchh---h
Confidence 987642 111111111 1233456899999999998 3322 1
Q ss_pred cccccccccCccCchhHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc---CCChHHHHHHHHHHHHHHH
Q psy8368 132 ADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ---VTNYEDQMQLEEYLCRVYR 208 (372)
Q Consensus 132 ~~~~~~~~~~~~e~~~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~---~~~~~~~~~~~~l~~~l~~ 208 (372)
..+.|.|+.+|+ +..+..+..+||.+|+.|+|.+|...|+.|+..+.... .|.++++.++......++.
T Consensus 163 --q~e~WqlsddeK------mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLll 234 (329)
T KOG0545|consen 163 --QRETWQLSDDEK------MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLL 234 (329)
T ss_pred --ccccccCCchHh------hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHH
Confidence 145899998876 78899999999999999999999999999998886643 6778899999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368 209 NLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKA 288 (372)
Q Consensus 209 Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~ 288 (372)
|.++|+++.++|.+++.+|..+|+ .+|.|+|||||+|+|+....+..+|..+|.++|+++|.-+ ..+.++|..+
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~----~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla--svVsrElr~l 308 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILR----HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA--SVVSRELRLL 308 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH--HHHHHHHHHH
Confidence 999999999999999999999998 9999999999999999999999999999999999999865 5788999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q psy8368 289 DLGNQQYQKETKARCMKMFS 308 (372)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~ 308 (372)
..++.+.+...+-.+++||+
T Consensus 309 e~r~~ek~~edr~~~~kmfs 328 (329)
T KOG0545|consen 309 ENRMAEKQEEDRLRCRKMFS 328 (329)
T ss_pred HHHHHHhhhHHHHHHHHhcC
Confidence 99999999999999999996
No 3
>KOG0544|consensus
Probab=99.94 E-value=6.2e-26 Score=165.54 Aligned_cols=105 Identities=29% Similarity=0.506 Sum_probs=99.9
Q ss_pred cEEEEEEecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecC
Q psy8368 15 KLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASY 93 (372)
Q Consensus 15 ~i~k~il~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~ 93 (372)
|+.+.+++.|+|.. |+.|++|++||++.+.||. .|||+.+++. |+.|.+|.|.+|.||++++..|.+||++.+.|+|
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~-kfDSs~dr~k-Pfkf~IGkgeVIkGwdegv~qmsvGekakLti~p 79 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGK-KFDSSRDRGK-PFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISP 79 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCc-EeecccccCC-CeeEEecCcceeechhhcchhccccccceeeecc
Confidence 47889999999965 9999999999999999865 9999999998 9999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCCCCCCcEEEEEEEEee
Q psy8368 94 ELCFGALGCPPRIPAKADLLFEVHLINF 121 (372)
Q Consensus 94 ~~~yg~~g~~~~ip~~~~~~~~iel~~~ 121 (372)
+++||..|.|..||||++|+|+|+|+.+
T Consensus 80 d~aYG~~G~p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 80 DYAYGPRGHPGGIPPNATLVFDVELLKV 107 (108)
T ss_pred ccccCCCCCCCccCCCcEEEEEEEEEec
Confidence 9999999988899999999999999876
No 4
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=8e-24 Score=179.11 Aligned_cols=108 Identities=32% Similarity=0.540 Sum_probs=102.1
Q ss_pred cCCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEE
Q psy8368 11 IQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFF 90 (372)
Q Consensus 11 ~~d~~i~k~il~~G~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~ 90 (372)
+..+|+.+++++.|+|..|..|+.|++||+|++.||+ +|||++.+++ |+.|++| .+|+||.++|.+|++|+++.++
T Consensus 98 ~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~-vFDsS~~rg~-p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~ 173 (205)
T COG0545 98 TLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGT-VFDSSYDRGQ-PAEFPLG--GVIPGWDEGLQGMKVGGKRKLT 173 (205)
T ss_pred ECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCC-ccccccccCC-CceeecC--CeeehHHHHHhhCCCCceEEEE
Confidence 4678899999999999999999999999999999865 9999999999 9999999 9999999999999999999999
Q ss_pred ecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368 91 ASYELCFGALGCPPRIPAKADLLFEVHLINFS 122 (372)
Q Consensus 91 i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~ 122 (372)
|||+++||..|.+..||||++|+|+|+|+++.
T Consensus 174 IP~~laYG~~g~~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 174 IPPELAYGERGVPGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred eCchhccCcCCCCCCCCCCCeEEEEEEEEecC
Confidence 99999999999877899999999999999763
No 5
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.85 E-value=7.9e-21 Score=166.34 Aligned_cols=106 Identities=28% Similarity=0.447 Sum_probs=99.5
Q ss_pred CCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEe
Q psy8368 12 QDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFA 91 (372)
Q Consensus 12 ~d~~i~k~il~~G~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i 91 (372)
..+|+.++|+++|+|..|..||.|+|||++++.+| ++|||++.++. |++|.+| .++|||+++|.+|++|+++.|.|
T Consensus 100 t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~dG-~vfdss~~~g~-P~~f~l~--~vipG~~eaL~~M~~G~k~~~~I 175 (206)
T PRK11570 100 TESGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDG-TVFDSSVARGE-PAEFPVN--GVIPGWIEALTLMPVGSKWELTI 175 (206)
T ss_pred CCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECCC-CEEEeccCCCC-CeEEEee--chhhHHHHHHcCCCCCCEEEEEE
Confidence 56789999999999999999999999999999875 59999998888 9999997 79999999999999999999999
Q ss_pred cCCCccCCCCCCCCCCCCCcEEEEEEEEee
Q psy8368 92 SYELCFGALGCPPRIPAKADLLFEVHLINF 121 (372)
Q Consensus 92 ~~~~~yg~~g~~~~ip~~~~~~~~iel~~~ 121 (372)
|++++||..|.++.|||+++++|+|+|++|
T Consensus 176 P~~lAYG~~g~~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 176 PHELAYGERGAGASIPPFSTLVFEVELLEI 205 (206)
T ss_pred CHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence 999999999988889999999999999976
No 6
>KOG0553|consensus
Probab=99.85 E-value=8.1e-21 Score=169.80 Aligned_cols=125 Identities=20% Similarity=0.254 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy8368 150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASK 229 (372)
Q Consensus 150 ~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~ 229 (372)
+-...++.+|.+||.+.+.++|.+|+..|.+||.+.|.. ..+|.|+|.+|.+||+|..|+++|+.
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n---------------AVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN---------------AVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---------------chHHHHHHHHHHHhcchHHHHHHHHH
Confidence 467899999999999999999999999999999998776 68999999999999999999999999
Q ss_pred HHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368 230 ALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ 296 (372)
Q Consensus 230 aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~ 296 (372)
||. +||.++|+|.|+|.||+.+|+|++|++.|++||.++|+|. ..+..|..+...+.+..
T Consensus 141 Al~----iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne---~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 141 ALS----IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE---SYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHh----cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH---HHHHHHHHHHHHhcCCC
Confidence 998 9999999999999999999999999999999999999999 99999999988877655
No 7
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.83 E-value=5.6e-20 Score=157.16 Aligned_cols=109 Identities=19% Similarity=0.310 Sum_probs=97.5
Q ss_pred cCCCcEEEEEEec--CCCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEE
Q psy8368 11 IQDGKLMKKIKEK--GFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSD 88 (372)
Q Consensus 11 ~~d~~i~k~il~~--G~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~ 88 (372)
.+..|+++++++. |+|..|..||.|++||++++.+|. +|++++. .. |++|.+|.+.+++||+++|.+|++||++.
T Consensus 66 ~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~dG~-v~~ss~~-~~-P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~ 142 (177)
T TIGR03516 66 TSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALDGD-VIYSEEE-LG-PQTYKVDQQDLFSGLRDGLKLMKEGETAT 142 (177)
T ss_pred ECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCCCC-EEEeCCC-CC-CEEEEeCCcchhHHHHHHHcCCCCCCEEE
Confidence 3566777777765 666679999999999999998865 8998875 35 99999999999999999999999999999
Q ss_pred EEecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368 89 FFASYELCFGALGCPPRIPAKADLLFEVHLINFS 122 (372)
Q Consensus 89 ~~i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~ 122 (372)
|.+|+++|||..|.+..||+|++|+|+|+|+++.
T Consensus 143 ~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 143 FLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence 9999999999999888899999999999999886
No 8
>KOG0549|consensus
Probab=99.83 E-value=6.6e-20 Score=151.86 Aligned_cols=109 Identities=30% Similarity=0.531 Sum_probs=97.0
Q ss_pred CCCcEEEEEEecCCC--CCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEE
Q psy8368 12 QDGKLMKKIKEKGFG--ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDF 89 (372)
Q Consensus 12 ~d~~i~k~il~~G~g--~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~ 89 (372)
.++.+.-.|++.-.. .....||.|.+||++.+.||+ +||||+.++. |++|.+|.+++|+||+.+|.+|.+||+..+
T Consensus 66 ~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt-~fdSS~~rg~-P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl 143 (188)
T KOG0549|consen 66 PDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGT-KFDSSYSRGA-PFTFTLGTGQVIKGWDQGLLGMCVGEKRKL 143 (188)
T ss_pred CCCceeEEEEECCccccccccCCCEEEEEEEEEecCCC-EEeeeccCCC-CEEEEeCCCceeccHhHHhhhhCcccceEE
Confidence 345566666665222 236799999999999888865 9999999999 999999999999999999999999999999
Q ss_pred EecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368 90 FASYELCFGALGCPPRIPAKADLLFEVHLINFS 122 (372)
Q Consensus 90 ~i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~ 122 (372)
.|||+++||+.|.|+.||++++|+|+|+++.+.
T Consensus 144 ~IPp~LgYG~~G~~~~IP~~A~LiFdiELv~i~ 176 (188)
T KOG0549|consen 144 IIPPHLGYGERGAPPKIPGDAVLIFDIELVKIE 176 (188)
T ss_pred ecCccccCccCCCCCCCCCCeeEEEEEEEEEee
Confidence 999999999999988999999999999999998
No 9
>KOG4234|consensus
Probab=99.83 E-value=2.1e-19 Score=151.40 Aligned_cols=134 Identities=16% Similarity=0.221 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy8368 150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASK 229 (372)
Q Consensus 150 ~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~ 229 (372)
..+..+..+|..||.+|+.|+|.+|...|..||.+++..+ ...+..||.|+|.|++|++.|..||..|.+
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~----------~e~rsIly~Nraaa~iKl~k~e~aI~dcsK 159 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS----------TEERSILYSNRAAALIKLRKWESAIEDCSK 159 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc----------HHHHHHHHhhhHHHHHHhhhHHHHHHHHHh
Confidence 3578899999999999999999999999999999987653 245689999999999999999999999999
Q ss_pred HHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368 230 ALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETK 300 (372)
Q Consensus 230 aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~ 300 (372)
||+ ++|.+.||+.|||.+|..+..|++|+++|++.++++|.+. +++..+.++...+....++.+
T Consensus 160 aie----l~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~---ear~~i~rl~~~i~ernEkmK 223 (271)
T KOG4234|consen 160 AIE----LNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR---EAREAIARLPPKINERNEKMK 223 (271)
T ss_pred hHh----cCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH---HHHHHHHhcCHHHHHHHHHHH
Confidence 998 9999999999999999999999999999999999999999 999999999888877766655
No 10
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.80 E-value=1e-18 Score=158.56 Aligned_cols=107 Identities=31% Similarity=0.541 Sum_probs=99.2
Q ss_pred cCCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEE
Q psy8368 11 IQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFF 90 (372)
Q Consensus 11 ~~d~~i~k~il~~G~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~ 90 (372)
..++|++|+|+++|+|..|..||.|+|||++++.+| ++|++++.++. |++|.++ .++|||+++|.+|++|+++.|.
T Consensus 143 ~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~dG-~vfdss~~~g~-p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~ 218 (269)
T PRK10902 143 TTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLIDG-KEFDNSYTRGE-PLSFRLD--GVIPGWTEGLKNIKKGGKIKLV 218 (269)
T ss_pred ECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCCC-CEeeccccCCC-ceEEecC--CcchHHHHHHhcCCCCcEEEEE
Confidence 357789999999999999999999999999998765 59999988888 9999997 7999999999999999999999
Q ss_pred ecCCCccCCCCCCCCCCCCCcEEEEEEEEeee
Q psy8368 91 ASYELCFGALGCPPRIPAKADLLFEVHLINFS 122 (372)
Q Consensus 91 i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~~ 122 (372)
||++++||..|.+ .||+|++++|+|+|+++.
T Consensus 219 IP~~laYG~~g~~-gIppns~LvfeVeLl~V~ 249 (269)
T PRK10902 219 IPPELAYGKAGVP-GIPANSTLVFDVELLDVK 249 (269)
T ss_pred ECchhhCCCCCCC-CCCCCCcEEEEEEEEEec
Confidence 9999999998875 699999999999999998
No 11
>KOG0552|consensus
Probab=99.78 E-value=2.2e-18 Score=149.77 Aligned_cols=109 Identities=28% Similarity=0.463 Sum_probs=100.0
Q ss_pred ccCCCcEEEEEEecCCCCCCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeE-EEcCCCccchHHHHHhccCCCCcEEE
Q psy8368 10 QIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER-FQLGSSGLIPAFEYAILSMQKGEKSD 88 (372)
Q Consensus 10 i~~d~~i~k~il~~G~g~~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~-~~~g~~~~~~~le~~l~~m~~Ge~~~ 88 (372)
++-.+|+.++-++-|.|..+..|+.|.+||.+++...|++||+++... |+. |.+|.+.+|+||+.+|.+|++|.+..
T Consensus 116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~k--p~~~f~lg~g~VIkG~d~gv~GMkvGGkRr 193 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFGGK--PFKLFRLGSGEVIKGWDVGVEGMKVGGKRR 193 (226)
T ss_pred eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccCCC--CccccccCCCCCCchHHHhhhhhccCCeeE
Confidence 344678889999999999999999999999999985567999998654 888 99999999999999999999999999
Q ss_pred EEecCCCccCCCCCCCCCCCCCcEEEEEEEEee
Q psy8368 89 FFASYELCFGALGCPPRIPAKADLLFEVHLINF 121 (372)
Q Consensus 89 ~~i~~~~~yg~~g~~~~ip~~~~~~~~iel~~~ 121 (372)
|+|||.++||..+.+ .||+|++|+|+|+|+.+
T Consensus 194 viIPp~lgYg~~g~~-~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 194 VIIPPELGYGKKGVP-EIPPNSTLVFDVELLSV 225 (226)
T ss_pred EEeCccccccccCcC-cCCCCCcEEEEEEEEec
Confidence 999999999999987 69999999999999976
No 12
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.77 E-value=5.1e-18 Score=131.10 Aligned_cols=92 Identities=38% Similarity=0.720 Sum_probs=84.2
Q ss_pred CCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCCC-C
Q psy8368 26 GEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGC-P 103 (372)
Q Consensus 26 g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g~-~ 103 (372)
|.. |..||.|+|||++++.+ +++|++++.... |++|.+|.+.+++||+.+|.+|++||++.|.||++++||..+. +
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~-g~~~~~~~~~~~-~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~ 78 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLED-GKVFDSSYQEGE-PFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP 78 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETT-SEEEEETTTTTS-EEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT
T ss_pred CCccCCCCCEEEEEEEEEECC-CcEEEEeeecCc-ceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC
Confidence 344 89999999999999985 679999977777 9999999999999999999999999999999999999999887 4
Q ss_pred CCCCCCCcEEEEEEEE
Q psy8368 104 PRIPAKADLLFEVHLI 119 (372)
Q Consensus 104 ~~ip~~~~~~~~iel~ 119 (372)
..||++++++|+|+|+
T Consensus 79 ~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 79 PKIPPNSTLVFEIELL 94 (94)
T ss_dssp TTBTTTSEEEEEEEEE
T ss_pred CCcCCCCeEEEEEEEC
Confidence 4799999999999985
No 13
>KOG0543|consensus
Probab=99.77 E-value=1e-17 Score=155.76 Aligned_cols=265 Identities=20% Similarity=0.210 Sum_probs=169.8
Q ss_pred ecCCCCC-CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCC
Q psy8368 22 EKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGAL 100 (372)
Q Consensus 22 ~~G~g~~-~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~ 100 (372)
++|+|.. |..|+.|.+||++++.+|+ .||||.+ +. |+.|.+|.|.++.||..++.+|+. |..
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt-~fdss~d-~~-~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~ 63 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGT-KFDSSRD-GD-PFKFDLGKGSVIKGWDLGVATMKK--------------GEA 63 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCe-ecccccC-CC-ceeeecCCCccccccccccccccc--------------ccc
Confidence 4799987 9999999999999999875 8999988 67 999999999999999999999999 677
Q ss_pred CCCCCCCCCCcEEEEEEEE------eeecCccccc-c--------------------ccccccccccCccCchhHHHHHH
Q psy8368 101 GCPPRIPAKADLLFEVHLI------NFSIDPQVVR-S--------------------SADIESDFIDSQVEEPAFAKVLK 153 (372)
Q Consensus 101 g~~~~ip~~~~~~~~iel~------~~~~~~~~~~-~--------------------~~~~~~~~~~~~~e~~~~~~~~~ 153 (372)
+.|+.||+++++.|+|++. .+. .++.++ . |.+....|++...+-...-+-++
T Consensus 64 ~~pp~ip~~a~l~fe~el~Dg~iiKrii-r~G~gd~~~P~~g~~V~v~~~G~~~~~~f~~~~~~fe~~~Ge~~~vi~Gle 142 (397)
T KOG0543|consen 64 GSPPKIPSNATLLFEVELLDGGIIKRII-REGEGDYSRPNKGAVVKVHLEGELEDGVFDQRELRFEFGEGEDIDVIEGLE 142 (397)
T ss_pred CCCCCCCCCcceeeeecccCCceEEeee-ecCCCCCCCCCCCcEEEEEEEEEECCcceeccccceEEecCCccchhHHHH
Confidence 8889999999999999963 222 233331 0 11111122222211111111222
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccC-------------------CChHHHHHHHHHHHHHHHHHHHHH
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQV-------------------TNYEDQMQLEEYLCRVYRNLMVCY 214 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~-------------------~~~~~~~~~~~l~~~l~~Nla~~~ 214 (372)
.+......|-..+---.+.-|.- ......+..|. .+.....+.-.. +...--.|+.|
T Consensus 143 ~al~~M~~GE~a~v~i~~~YayG---~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~-A~~~ke~Gn~~ 218 (397)
T KOG0543|consen 143 IALRMMKVGEVALVTIDPKYAYG---EEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLEA-ADRKKERGNVL 218 (397)
T ss_pred HHHHhcCccceEEEEeCcccccC---CCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHHH-HHHHHHhhhHH
Confidence 22222222222111111100000 00000000000 011111111111 34455678999
Q ss_pred HHccCHHHHHHHHHHHHHhhccCCCCc-----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368 215 NNNKQYKLTCDCASKALQFASHFATKD-----------VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK 283 (372)
Q Consensus 215 ~kl~~y~~Ai~~~~~aL~~~~~~~p~~-----------~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~ 283 (372)
+|.++|..|+..|++|+.++....+.+ ..++.++|.||.++++|.+|+..+.++|.++|+|. .+..
T Consensus 219 fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~---KALy 295 (397)
T KOG0543|consen 219 FKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV---KALY 295 (397)
T ss_pred HhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch---hHHH
Confidence 999999999999999998664332222 23799999999999999999999999999999999 7777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368 284 EILKADLGNQQYQKETKARCMKMFSSSSS 312 (372)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (372)
.-+++...+.++. ..+..++++....+.
T Consensus 296 RrG~A~l~~~e~~-~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 296 RRGQALLALGEYD-LARDDFQKALKLEPS 323 (397)
T ss_pred HHHHHHHhhccHH-HHHHHHHHHHHhCCC
Confidence 7777777777664 345566666555544
No 14
>KOG0548|consensus
Probab=99.68 E-value=3e-16 Score=149.76 Aligned_cols=117 Identities=23% Similarity=0.356 Sum_probs=110.4
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~ 233 (372)
.+...++.||.+|+.|+|..|+.+|++||...|.. ..+|.|+|.||+++++|..|+.+|+.+++
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D---------------a~lYsNRAac~~kL~~~~~aL~Da~~~ie- 420 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED---------------ARLYSNRAACYLKLGEYPEALKDAKKCIE- 420 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch---------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHh-
Confidence 47788999999999999999999999999987554 78999999999999999999999999998
Q ss_pred hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368 234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN 292 (372)
Q Consensus 234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~ 292 (372)
++|++.|+|+|.|.|+..+.+|+.|++.|.++++++|++. ++...+.+|...+
T Consensus 421 ---L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~---e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 421 ---LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA---EAIDGYRRCVEAQ 473 (539)
T ss_pred ---cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH---HHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999 9999998887754
No 15
>KOG0547|consensus
Probab=99.68 E-value=5.7e-16 Score=146.04 Aligned_cols=127 Identities=20% Similarity=0.263 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy8368 149 AKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCAS 228 (372)
Q Consensus 149 ~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~ 228 (372)
+++.+.+..+|.+||.+|+.|+|++||.+|++||.+++.. ...|.|+|.||..+|+|++.+++|+
T Consensus 109 e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e---------------piFYsNraAcY~~lgd~~~Vied~T 173 (606)
T KOG0547|consen 109 EERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE---------------PIFYSNRAACYESLGDWEKVIEDCT 173 (606)
T ss_pred HHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC---------------chhhhhHHHHHHHHhhHHHHHHHHH
Confidence 4678999999999999999999999999999999998764 4789999999999999999999999
Q ss_pred HHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CCccHHHHHHHHHHHHHHHHHHHH
Q psy8368 229 KALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAA-KDSVRAEIDKEILKADLGNQQYQK 297 (372)
Q Consensus 229 ~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p-~~~~~~~~~~~l~~~~~~~~~~~~ 297 (372)
+||+ ++|+.+||++|||.||..+|++.+|+.+..-..-+.- +|. .+...+.++.++....+.
T Consensus 174 kALE----l~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~---s~~~~~eR~Lkk~a~~ka 236 (606)
T KOG0547|consen 174 KALE----LNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNA---SIEPMAERVLKKQAMKKA 236 (606)
T ss_pred HHhh----cCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccc---hhHHHHHHHHHHHHHHHH
Confidence 9998 9999999999999999999999999999875544433 444 566666666665554433
No 16
>KOG4648|consensus
Probab=99.65 E-value=5.2e-16 Score=140.67 Aligned_cols=120 Identities=20% Similarity=0.221 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy8368 149 AKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCAS 228 (372)
Q Consensus 149 ~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~ 228 (372)
++++..+..+|+.||.||++|.|.+|+.||.+++...++. ..++.|+|.+|++++.|..|..+|+
T Consensus 91 ~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N---------------pV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 91 QQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHN---------------PVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred HHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCC---------------ccchhhHHHHHHHHHHHHHHHHhHH
Confidence 4578889999999999999999999999999999998877 4789999999999999999999999
Q ss_pred HHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy8368 229 KALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADL 290 (372)
Q Consensus 229 ~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~ 290 (372)
.|+. +|....|||.||+.|...||...+|.++++.+|+|.|++. ++++.++.+..
T Consensus 156 ~Aia----Ld~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~---ELkK~~a~i~S 210 (536)
T KOG4648|consen 156 AAIA----LDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNI---ELKKSLARINS 210 (536)
T ss_pred HHHH----hhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccH---HHHHHHHHhcc
Confidence 9997 9999999999999999999999999999999999999998 88777777655
No 17
>KOG0550|consensus
Probab=99.63 E-value=4.2e-15 Score=137.79 Aligned_cols=151 Identities=16% Similarity=0.248 Sum_probs=126.6
Q ss_pred cCccCc--hhHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHc
Q psy8368 140 DSQVEE--PAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNN 217 (372)
Q Consensus 140 ~~~~e~--~~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl 217 (372)
++|+.. .+.....+....+++.||.+|+.|+|..|.++|+.||.+.|.... ..+.||.|+|.+..++
T Consensus 232 ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~-----------~naklY~nra~v~~rL 300 (486)
T KOG0550|consen 232 LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK-----------TNAKLYGNRALVNIRL 300 (486)
T ss_pred cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc-----------hhHHHHHHhHhhhccc
Confidence 555442 222345678899999999999999999999999999999766422 2278999999999999
Q ss_pred cCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHH
Q psy8368 218 KQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQK 297 (372)
Q Consensus 218 ~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~ 297 (372)
|+..+|+.+|+.|++ +||...|||.++|.||+.+++|++|.++|++|++++.+ . ++++.+.+++..+++.+
T Consensus 301 grl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~---e~r~~l~~A~~aLkkSk- 371 (486)
T KOG0550|consen 301 GRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-C---EIRRTLREAQLALKKSK- 371 (486)
T ss_pred CCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c---chHHHHHHHHHHHHHhh-
Confidence 999999999999998 99999999999999999999999999999999999988 7 88999998888777554
Q ss_pred HHHHHHHhhccCCCC
Q psy8368 298 ETKARCMKMFSSSSS 312 (372)
Q Consensus 298 ~~~~~~~~~~~~~~~ 312 (372)
++.|-++++....
T Consensus 372 --Rkd~ykilGi~~~ 384 (486)
T KOG0550|consen 372 --RKDWYKILGISRN 384 (486)
T ss_pred --hhhHHHHhhhhhh
Confidence 3445555554443
No 18
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.59 E-value=3.2e-14 Score=136.25 Aligned_cols=119 Identities=25% Similarity=0.299 Sum_probs=110.7
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA 234 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~ 234 (372)
+..++..|+.+|..|+|..|+..|.+||...+.. ..+++|+|.||+++|+|.+|+.+++++++
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~---------------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~-- 64 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN---------------AELYADRAQANIKLGNFTEAVADANKAIE-- 64 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 3467889999999999999999999999987655 57899999999999999999999999998
Q ss_pred ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy8368 235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQY 295 (372)
Q Consensus 235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~ 295 (372)
++|++..+|+++|.+|..+|+|++|+.+|+++++++|++. .+...+..|...+...
T Consensus 65 --l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~---~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 65 --LDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDS---RFTKLIKECDEKIAEE 120 (356)
T ss_pred --hCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999 9999999998877543
No 19
>KOG0548|consensus
Probab=99.54 E-value=2.8e-14 Score=136.34 Aligned_cols=113 Identities=22% Similarity=0.302 Sum_probs=107.5
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA 234 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~ 234 (372)
+..+++.||.+|..|+|..|+.+|+.||.+.|.. ..+|.|++.||.++++|.+|+.+..+..+
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~n---------------hvlySnrsaa~a~~~~~~~al~da~k~~~-- 64 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTN---------------HVLYSNRSAAYASLGSYEKALKDATKTRR-- 64 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCc---------------cchhcchHHHHHHHhhHHHHHHHHHHHHh--
Confidence 5678999999999999999999999999997765 68999999999999999999999999998
Q ss_pred ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q psy8368 235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKAD 289 (372)
Q Consensus 235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~ 289 (372)
++|.++|+|.|+|.++..+|+|++|+..|.++|+.+|+|. .+...|..+.
T Consensus 65 --l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~---~L~~gl~~a~ 114 (539)
T KOG0548|consen 65 --LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNK---QLKTGLAQAY 114 (539)
T ss_pred --cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchH---HHHHhHHHhh
Confidence 9999999999999999999999999999999999999999 8888888877
No 20
>KOG0551|consensus
Probab=99.53 E-value=1e-13 Score=125.52 Aligned_cols=109 Identities=17% Similarity=0.284 Sum_probs=95.7
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
+.|..+|+.||.+|+.++|..|+..|+++|..-...+ .+.+.||+|+|.|.+-+|+|..||.+|.+|+.
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~-----------dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~ 147 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADP-----------DLNAVLYTNRAAAQLYLGNYRSALNDCSAALK 147 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCc-----------cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999998643221 24478999999999999999999999999998
Q ss_pred hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
++|.+.||++|-|+|++.|.++.+|...+...+.++-...
T Consensus 148 ----~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 148 ----LKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred ----cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 9999999999999999999998888888877776654433
No 21
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.53 E-value=4.1e-13 Score=111.99 Aligned_cols=114 Identities=18% Similarity=0.102 Sum_probs=103.9
Q ss_pred HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368 157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH 236 (372)
Q Consensus 157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~ 236 (372)
.+...|..++..|+|.+|+..|.+++...+.. ...+.++|.++.++|+|.+|+..|.+++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~---- 86 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWS---------------WRAHIALAGTWMMLKEYTTAINFYGHALM---- 86 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh----
Confidence 45678999999999999999999999986655 68999999999999999999999999998
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368 237 FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN 292 (372)
Q Consensus 237 ~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~ 292 (372)
++|+++.+++++|.++..+|++++|+..|.+|++++|+++ ......+.++..+
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~---~~~~~~~~~~~~l 139 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA---SWSEIRQNAQIMV 139 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 7776666665543
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.51 E-value=3.8e-13 Score=138.37 Aligned_cols=134 Identities=20% Similarity=0.209 Sum_probs=111.9
Q ss_pred CCCCCcEEEEEEEEeeecCccccccccccccccccCccCchhHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhh
Q psy8368 106 IPAKADLLFEVHLINFSIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLL 185 (372)
Q Consensus 106 ip~~~~~~~~iel~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~ 185 (372)
+|++.++....++..+. ....|.|++++ ....+..+++.||.+|+.|+|.+|+..|.++|.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~------~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~ 157 (615)
T TIGR00990 95 APKNAPVEPADELPEID-----------ESSVANLSEEE------RKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK 157 (615)
T ss_pred CCCCCCCCccccccccc-----------hhhcccCCHHH------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55666666655555444 12235555443 46789999999999999999999999999999886
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q psy8368 186 INTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHL 265 (372)
Q Consensus 186 ~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~ 265 (372)
+. ..+|.|+|.||+++|+|++|+.+|+++|+ ++|++.++|+++|.+|..+|+|++|+.+|
T Consensus 158 p~----------------~~~~~n~a~~~~~l~~~~~Ai~~~~~al~----l~p~~~~a~~~~a~a~~~lg~~~eA~~~~ 217 (615)
T TIGR00990 158 PD----------------PVYYSNRAACHNALGDWEKVVEDTTAALE----LDPDYSKALNRRANAYDGLGKYADALLDL 217 (615)
T ss_pred Cc----------------hHHHHHHHHHHHHhCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 43 25799999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHhhcCCCc
Q psy8368 266 KTARKLAAKDS 276 (372)
Q Consensus 266 ~~al~l~p~~~ 276 (372)
..++.+++.+.
T Consensus 218 ~~~~~~~~~~~ 228 (615)
T TIGR00990 218 TASCIIDGFRN 228 (615)
T ss_pred HHHHHhCCCcc
Confidence 99988877654
No 23
>KOG0546|consensus
Probab=99.49 E-value=5.1e-14 Score=128.69 Aligned_cols=176 Identities=24% Similarity=0.287 Sum_probs=150.7
Q ss_pred CccccccccccccccccCccCchhHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCCh-H--H-HHHH
Q psy8368 124 DPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNY-E--D-QMQL 199 (372)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-~--~-~~~~ 199 (372)
...+++.+++.|.+|. .....++...+...+..++.||..|++++|..|...|.++++++...+.... + . ...+
T Consensus 193 ~~~sgd~~~d~p~~~~--~~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~ 270 (372)
T KOG0546|consen 193 PDETGDSYEDYPKDDR--SWDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPL 270 (372)
T ss_pred CCCCCCcccccccccc--cccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccc
Confidence 3455677787776542 2233455668899999999999999999999999999999999875221111 1 1 2446
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHH
Q psy8368 200 EEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRA 279 (372)
Q Consensus 200 ~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~ 279 (372)
..++..++.|++.|-++++.|..|+..|..+++ .++...+|+||++.+++.+.++++|++++..+....|++.
T Consensus 271 ~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~----~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~--- 343 (372)
T KOG0546|consen 271 RELRFSIRRNLAAVGLKVKGRGGARFRTNEALR----DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK--- 343 (372)
T ss_pred cccccccccchHHhcccccCCCcceeccccccc----cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH---
Confidence 677889999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8368 280 EIDKEILKADLGNQQYQKETKARCMKMFS 308 (372)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
++...+....+...++..++++.+.+||.
T Consensus 344 ~i~~~~~~~~~~~~~~~~~~~~~~~k~~s 372 (372)
T KOG0546|consen 344 AIEEELENVRQKKKQYNRKQKKALSKMFS 372 (372)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999874
No 24
>KOG4626|consensus
Probab=99.45 E-value=7.5e-13 Score=128.25 Aligned_cols=170 Identities=15% Similarity=0.153 Sum_probs=112.7
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS 235 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~ 235 (372)
..+.+.||.+..+|.++.|...|.+|+.+.+.. +..++|+|..|-+.|++++|+.+|.+||+
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~v~p~~---------------aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--- 416 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALEVFPEF---------------AAAHNNLASIYKQQGNLDDAIMCYKEALR--- 416 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhChhh---------------hhhhhhHHHHHHhcccHHHHHHHHHHHHh---
Confidence 333444444444444444444444444444333 56777777777777777777777777776
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc
Q psy8368 236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSSPSQ 315 (372)
Q Consensus 236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (372)
++|..+.||.++|..|..+|+.+.|+.+|.+|+.++|..+ +++..|+.+.+. .++.+.
T Consensus 417 -I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A---eAhsNLasi~kD------------------sGni~~ 474 (966)
T KOG4626|consen 417 -IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA---EAHSNLASIYKD------------------SGNIPE 474 (966)
T ss_pred -cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH---HHHhhHHHHhhc------------------cCCcHH
Confidence 7777777777777777777777777777777777777777 777777766543 344556
Q ss_pred chHHHhhhhhhccCCCcccccccccccccccCCCCCchhhHHHHHHhhhhh
Q psy8368 316 HSNVVRIAYQEHEQVRPATLQEIQDTEESNESDGYDVGDFEKLMEIRMSEF 366 (372)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 366 (372)
++..++.+++..|+.+.+.-....--+=.++|..||. -|.||.+|--+..
T Consensus 475 AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~-~~~kl~sivrdql 524 (966)
T KOG4626|consen 475 AIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDK-RMKKLVSIVRDQL 524 (966)
T ss_pred HHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHH-HHHHHHHHHHHHH
Confidence 7888888888888887766655544444567766664 4677777755443
No 25
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.39 E-value=1.6e-11 Score=100.85 Aligned_cols=115 Identities=19% Similarity=0.226 Sum_probs=103.0
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA 234 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~ 234 (372)
+..+...|..++..|++.+|...|++++...+.. ..++.++|.|+.++++|.+|+.+++++++
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~-- 79 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN---------------SRYWLGLAACCQMLKEYEEAIDAYALAAA-- 79 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 4567889999999999999999999999876544 57899999999999999999999999998
Q ss_pred ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368 235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG 291 (372)
Q Consensus 235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~ 291 (372)
.+|.+...++.+|.+|..+|++++|+..|+++++++|++. .......++...
T Consensus 80 --~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~ 131 (135)
T TIGR02552 80 --LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENP---EYSELKERAEAM 131 (135)
T ss_pred --cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc---hHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 666555555443
No 26
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.39 E-value=1.4e-12 Score=109.54 Aligned_cols=72 Identities=24% Similarity=0.350 Sum_probs=66.3
Q ss_pred CCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCC
Q psy8368 28 NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALG 101 (372)
Q Consensus 28 ~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g 101 (372)
.+..|+.|++||++++.+| ++||||+..+. |+.|.+|.+.+++||+.+|.+|++|+++.|.|||+.+||...
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG-~v~dst~~~~~-P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDG-STAESTRNNGK-PALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred ccCCCCEEEEEEEEEeCCC-CEEEECCCCCC-CEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 3788999999999999775 59999987677 999999999999999999999999999999999999999865
No 27
>KOG0376|consensus
Probab=99.38 E-value=4.7e-13 Score=127.10 Aligned_cols=121 Identities=23% Similarity=0.289 Sum_probs=114.4
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~ 233 (372)
.+..+++++|.+|+.+.|..|+..|.+||++-+.. +.++.|+|+++++.++|..|+.++.+|++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnc---------------a~~~anRa~a~lK~e~~~~Al~Da~kaie- 66 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNC---------------AIYFANRALAHLKVESFGGALHDALKAIE- 66 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcc---------------eeeechhhhhheeechhhhHHHHHHhhhh-
Confidence 46788999999999999999999999999997765 67899999999999999999999999998
Q ss_pred hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368 234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ 296 (372)
Q Consensus 234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~ 296 (372)
++|...|+|+|+|.+++.++++.+|+.+|++...+.|+++ .+++.+.+|.....+++
T Consensus 67 ---~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~---~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 67 ---LDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDP---DATRKIDECNKIVSEEK 123 (476)
T ss_pred ---cCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcH---HHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999 99999999999887654
No 28
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.37 E-value=2.5e-11 Score=100.59 Aligned_cols=105 Identities=14% Similarity=0.105 Sum_probs=97.1
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
+..+.+...|..++..|++++|...|+-...+.+.. ...++|+|.|+..+|+|.+||..|.+++.
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~---------------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~ 97 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS---------------FDYWFRLGECCQAQKHWGEAIYAYGRAAQ 97 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 346778889999999999999999999999987665 68999999999999999999999999997
Q ss_pred hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
++|+++.++++.|.||+.+|+.+.|+..|+.|+...-.++
T Consensus 98 ----L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 98 ----IKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred ----cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCh
Confidence 9999999999999999999999999999999999985544
No 29
>KOG4626|consensus
Probab=99.35 E-value=3e-12 Score=124.12 Aligned_cols=122 Identities=16% Similarity=0.105 Sum_probs=83.0
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~ 233 (372)
....|.+.||.|-..+.|+.|+.+|.+|+.+-+.. +.+|.|+|-.|...|..+-||.+|+++|.
T Consensus 251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~---------------A~a~gNla~iYyeqG~ldlAI~~Ykral~- 314 (966)
T KOG4626|consen 251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH---------------AVAHGNLACIYYEQGLLDLAIDTYKRALE- 314 (966)
T ss_pred chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc---------------hhhccceEEEEeccccHHHHHHHHHHHHh-
Confidence 36788899999999999999999999999886554 45566666666666666666666666665
Q ss_pred hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHH
Q psy8368 234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQK 297 (372)
Q Consensus 234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~ 297 (372)
++|+...||.++|.|+..+|+..+|..+|++||.+.|+++ ++...|+.++.++.....
T Consensus 315 ---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha---dam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 315 ---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA---DAMNNLGNIYREQGKIEE 372 (966)
T ss_pred ---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH---HHHHHHHHHHHHhccchH
Confidence 6666666666666666666666666666666666666666 666666665555554433
No 30
>KOG4642|consensus
Probab=99.34 E-value=3.9e-12 Score=110.50 Aligned_cols=119 Identities=24% Similarity=0.317 Sum_probs=102.5
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
..+..+++.||.+|..++|..|+.+|.+||.+.|.. ++.+.|+|.||+++++|+.+..+|.+|++
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~---------------~~Y~tnralchlk~~~~~~v~~dcrralq 72 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTV---------------ASYYTNRALCHLKLKHWEPVEEDCRRALQ 72 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCc---------------chhhhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence 357899999999999999999999999999987665 68999999999999999999999999998
Q ss_pred hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc--cHHHHHHHHHHHHH
Q psy8368 233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS--VRAEIDKEILKADL 290 (372)
Q Consensus 233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~--~~~~~~~~l~~~~~ 290 (372)
++|+.+|++|-+|.+.+....|.+|+..+++|..+--..+ ...++...|..++.
T Consensus 73 ----l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~ 128 (284)
T KOG4642|consen 73 ----LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKK 128 (284)
T ss_pred ----cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Confidence 9999999999999999999999999999999966532111 11256666666554
No 31
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.25 E-value=2.4e-11 Score=87.81 Aligned_cols=66 Identities=21% Similarity=0.385 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcC
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQ-EWTSAIKHLKTARKLAA 273 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~-~~e~A~~~~~~al~l~p 273 (372)
+..+.++|.+++.+++|++|+.+|+++++ ++|+++.+++++|.+|..+| ++++|+.++++|++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~----~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIE----LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH----HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46789999999999999999999999998 99999999999999999999 79999999999999998
No 32
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.25 E-value=1.5e-10 Score=119.32 Aligned_cols=118 Identities=12% Similarity=0.047 Sum_probs=78.0
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~ 233 (372)
.+..+...|..++..|++++|+..|.+++...+.. ...+.++|.++..+|+|++|+.+++++++
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~---------------~~~~~~la~~~~~~g~~~eA~~~~~~al~- 393 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV---------------TQSYIKRASMNLELGDPDKAEEDFDKALK- 393 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 34567788999999999999999999999886543 34555666666666666666666666665
Q ss_pred hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368 234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ 293 (372)
Q Consensus 234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~ 293 (372)
.+|++..+++.+|.+|..+|++++|+.+|+++++++|++. .++..++.+....+
T Consensus 394 ---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~---~~~~~la~~~~~~g 447 (615)
T TIGR00990 394 ---LNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI---FSHIQLGVTQYKEG 447 (615)
T ss_pred ---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH---HHHHHHHHHHHHCC
Confidence 5566666666666666666666666666666666666655 55555544444333
No 33
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=2.4e-10 Score=106.91 Aligned_cols=105 Identities=15% Similarity=0.072 Sum_probs=99.2
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
..+..+.+.|..+...|++..|+..|.+++...+.. ..+++++|.++..+|+|++|+..++++++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM---------------ADAYNYLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 346779999999999999999999999999987655 68999999999999999999999999998
Q ss_pred hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
++|++..+++++|.++...|++++|+.+|+++++++|+++
T Consensus 127 ----l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 127 ----LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred ----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999999999999999997
No 34
>KOG0624|consensus
Probab=99.25 E-value=8.3e-11 Score=107.25 Aligned_cols=175 Identities=17% Similarity=0.229 Sum_probs=143.3
Q ss_pred ccccccccccCccCchhHH--HHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHH
Q psy8368 131 SADIESDFIDSQVEEPAFA--KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYR 208 (372)
Q Consensus 131 ~~~~~~~~~~~~~e~~~~~--~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~ 208 (372)
+-++.+++.++|+.+.+|. ..++.+....+.+......+.|.+++..+.+.++.-|..+. .+...+-
T Consensus 243 L~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~-----------ir~~~~r 311 (504)
T KOG0624|consen 243 LKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETM-----------IRYNGFR 311 (504)
T ss_pred HHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccc-----------eeeeeeh
Confidence 4555678888999988886 77788888899999999999999999999999987654210 1133455
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368 209 NLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKA 288 (372)
Q Consensus 209 Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~ 288 (372)
-++.||..-+++.+||..|.++|+ ++|+++.++..||.||+.-..|+.|+.+|++|++++++|. .++..+.++
T Consensus 312 ~~c~C~~~d~~~~eAiqqC~evL~----~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~---~~reGle~A 384 (504)
T KOG0624|consen 312 VLCTCYREDEQFGEAIQQCKEVLD----IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT---RAREGLERA 384 (504)
T ss_pred eeeecccccCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH---HHHHHHHHH
Confidence 578999999999999999999998 9999999999999999999999999999999999999999 999999988
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCcchHHHhhhhhhcc
Q psy8368 289 DLGNQQYQKETKARCMKMFSSSSSPSQHSNVVRIAYQEHE 328 (372)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (372)
++..++ ..+..|-++++-..+ ..+.++-++++...
T Consensus 385 krlkkq---s~kRDYYKILGVkRn--AsKqEI~KAYRKlA 419 (504)
T KOG0624|consen 385 KRLKKQ---SGKRDYYKILGVKRN--ASKQEITKAYRKLA 419 (504)
T ss_pred HHHHHH---hccchHHHHhhhccc--ccHHHHHHHHHHHH
Confidence 776553 455667777776665 34555555655543
No 35
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.25 E-value=2.4e-10 Score=100.50 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=95.1
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHH-HHccC--HHHHHHHHHHHH
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCY-NNNKQ--YKLTCDCASKAL 231 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~-~kl~~--y~~Ai~~~~~aL 231 (372)
+..+...|..+...|+++.|+..|.+|+.+.+.. ..++.++|.++ ...|+ +.+|+..+++++
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~---------------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al 137 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN---------------AELYAALATVLYYQAGQHMTPQTREMIDKAL 137 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 5678899999999999999999999999997765 68899999985 77787 599999999999
Q ss_pred HhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 232 QFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 232 ~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
+ .+|++..+++.+|.++..+|+|++|+.+++++++++|.+.
T Consensus 138 ~----~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 138 A----LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred H----hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 8 9999999999999999999999999999999999999876
No 36
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.5e-11 Score=100.70 Aligned_cols=71 Identities=30% Similarity=0.357 Sum_probs=66.1
Q ss_pred CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCC
Q psy8368 29 PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALG 101 (372)
Q Consensus 29 ~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g 101 (372)
+..|+.|+++|++++.+ +++||+|....+ |+.|.+|.+++++|||.||.+|.+|++..|.|||+.|||...
T Consensus 3 i~k~~~V~i~Y~~~~~d-g~v~Dtt~e~~~-P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 3 IEKGDVVSLHYTLKVED-GEVVDTTDENYG-PLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred ccCCCEEEEEEEEEecC-CcEEEcccccCC-CeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence 67899999999999998 679999987566 999999999999999999999999999999999999999865
No 37
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.15 E-value=1.5e-10 Score=99.92 Aligned_cols=70 Identities=20% Similarity=0.282 Sum_probs=64.1
Q ss_pred CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCC
Q psy8368 29 PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALG 101 (372)
Q Consensus 29 ~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g 101 (372)
+..++.|+|+|++++.+| ++||+|+. .. |++|.+|.+.++|+||.+|.+|++|++..|.|||+.|||...
T Consensus 3 I~~~~vV~l~Y~l~~~dG-~v~dst~~-~~-Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d 72 (196)
T PRK10737 3 VAKDLVVSLAYQVRTEDG-VLVDESPV-SA-PLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (196)
T ss_pred cCCCCEEEEEEEEEeCCC-CEEEecCC-CC-CeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 578899999999999764 69999975 45 999999999999999999999999999999999999999865
No 38
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.13 E-value=1.6e-09 Score=86.36 Aligned_cols=105 Identities=13% Similarity=0.091 Sum_probs=92.6
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS 235 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~ 235 (372)
..+...|..+++.|+|.+|+..|.+++...+..+ ....+++++|.++++.++|+.|+..+..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--- 67 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST------------YAPNAHYWLGEAYYAQGKYADAAKAFLAVVK--- 67 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc------------ccHHHHHHHHHHHHhhccHHHHHHHHHHHHH---
Confidence 4678899999999999999999999998764431 1135788999999999999999999999997
Q ss_pred cCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 236 HFATKD---VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 236 ~~~p~~---~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
.+|++ ..+++.+|.++..++++++|+..+.++++..|++.
T Consensus 68 -~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 68 -KYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred -HCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 66774 67899999999999999999999999999999998
No 39
>KOG1308|consensus
Probab=99.11 E-value=1.1e-10 Score=106.54 Aligned_cols=118 Identities=17% Similarity=0.192 Sum_probs=110.2
Q ss_pred cCccCchhHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccC
Q psy8368 140 DSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQ 219 (372)
Q Consensus 140 ~~~~e~~~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~ 219 (372)
|........++.+++++..+..+..++..|.|+.|+.+|..||.+.+.. ..+|.+++.+++++++
T Consensus 99 MGds~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~---------------a~l~~kr~sv~lkl~k 163 (377)
T KOG1308|consen 99 MGDSNAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPL---------------AILYAKRASVFLKLKK 163 (377)
T ss_pred hchhhhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCch---------------hhhcccccceeeeccC
Confidence 7776777778999999999999999999999999999999999987665 6899999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 220 YKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 220 y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
+..||.+|..|+. ++|+..+.|-.++.|+..+|++++|..+|..|++++-+-.
T Consensus 164 p~~airD~d~A~e----in~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 164 PNAAIRDCDFAIE----INPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEA 216 (377)
T ss_pred Cchhhhhhhhhhc----cCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccHH
Confidence 9999999999998 9999999999999999999999999999999999987654
No 40
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.07 E-value=4.1e-09 Score=112.48 Aligned_cols=119 Identities=12% Similarity=0.020 Sum_probs=88.9
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS 235 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~ 235 (372)
..+...|..+.+.|++++|+..|.+++...|.. ..+++|+|.++..+|++++|+..++++++
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~---------------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--- 671 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNN---------------SNYQAALGYALWDSGDIAQSREMLERAHK--- 671 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---
Confidence 345556666666666666666666666665443 56788888888888888888888888887
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368 236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ 296 (372)
Q Consensus 236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~ 296 (372)
++|+++.+++++|.++..+|++++|+.+|++|++++|++. .+...+..+........
T Consensus 672 -l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a---~i~~~~g~~~~~~~~~~ 728 (987)
T PRK09782 672 -GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA---LITPLTPEQNQQRFNFR 728 (987)
T ss_pred -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc---hhhhhhhHHHHHHHHHH
Confidence 7888888888888888888888888888888888888888 77777776665544443
No 41
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.06 E-value=7.3e-10 Score=78.97 Aligned_cols=65 Identities=14% Similarity=0.232 Sum_probs=60.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 208 RNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 208 ~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
+++|..+++.|+|++|+..++++++ .+|++..+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~----~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK----QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC----CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3689999999999999999999997 9999999999999999999999999999999999999975
No 42
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.06 E-value=2.7e-09 Score=79.77 Aligned_cols=99 Identities=21% Similarity=0.302 Sum_probs=89.0
Q ss_pred HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368 157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH 236 (372)
Q Consensus 157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~ 236 (372)
.+...|..++..|++.+|+..+.++++..+.. ..++.++|.|+...+++++|+.+++++++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---- 62 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN---------------ADAYYNLAAAYYKLGKYEEALEDYEKALE---- 62 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 35678899999999999999999999876543 36788999999999999999999999997
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q psy8368 237 FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK 274 (372)
Q Consensus 237 ~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~ 274 (372)
..|.+..+++.+|.++...|+++.|...+.++++++|+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 63 LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred CCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 88888899999999999999999999999999998874
No 43
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.06 E-value=3.4e-09 Score=91.03 Aligned_cols=110 Identities=20% Similarity=0.188 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy8368 151 VLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKA 230 (372)
Q Consensus 151 ~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~a 230 (372)
....+..+...|..+...|+|++|+.+|.+++...+... + ...++.++|.+|.++|+|++|+.++.++
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~----------~~~~~~~la~~~~~~g~~~~A~~~~~~a 98 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN--D----------RSYILYNMGIIYASNGEHDKALEYYHQA 98 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--h----------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 346778899999999999999999999999998754321 0 1468899999999999999999999999
Q ss_pred HHhhccCCCCchhHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhhcCCCc
Q psy8368 231 LQFASHFATKDVKLFFVWGKALIGLQE--------------WTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 231 L~~~~~~~p~~~ka~~r~a~a~~~l~~--------------~e~A~~~~~~al~l~p~~~ 276 (372)
++ .+|++..+++.+|.+|..+|+ +++|+..+++++.++|++-
T Consensus 99 l~----~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 99 LE----LNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HH----hCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 98 899999999999999999988 6788888888888898875
No 44
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.06 E-value=9.6e-09 Score=92.63 Aligned_cols=156 Identities=10% Similarity=0.117 Sum_probs=114.8
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~ 233 (372)
.+..+...|..++..|+|..|+..|.+++...+..+ .....++++|.+|+++++|++|+..++++++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~------------~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~- 98 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP------------YAEQAQLDLAYAYYKSGDYAEAIAAADRFIR- 98 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch------------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Confidence 467889999999999999999999999998876432 1135788999999999999999999999998
Q ss_pred hccCCCCchh---HHHHHHHHHHhc--------CCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368 234 ASHFATKDVK---LFFVWGKALIGL--------QEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKAR 302 (372)
Q Consensus 234 ~~~~~p~~~k---a~~r~a~a~~~l--------~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 302 (372)
..|++.. +++.+|.++..+ |++++|+..|++++..+|++. .+...+..+............ .
T Consensus 99 ---~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~a~~~~~~~~~~~~~~~~-~ 171 (235)
T TIGR03302 99 ---LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE---YAPDAKKRMDYLRNRLAGKEL-Y 171 (235)
T ss_pred ---HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh---hHHHHHHHHHHHHHHHHHHHH-H
Confidence 8888776 799999999987 889999999999999999998 444444333222211111111 1
Q ss_pred HHhhccCCCCCCcchHHHhhhhhhccC
Q psy8368 303 CMKMFSSSSSPSQHSNVVRIAYQEHEQ 329 (372)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (372)
...++-..+....+...++.++...|.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~ 198 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPD 198 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCC
Confidence 122222333344566777777766654
No 45
>KOG1126|consensus
Probab=99.05 E-value=5.1e-10 Score=109.91 Aligned_cols=134 Identities=14% Similarity=0.104 Sum_probs=111.2
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~ 233 (372)
..+.+...||.|--+++++.|+.+|++|+++.+.. +-.|.-+|.=+.....|+.|..+|+.||.
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f---------------aYayTLlGhE~~~~ee~d~a~~~fr~Al~- 483 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF---------------AYAYTLLGHESIATEEFDKAMKSFRKALG- 483 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc---------------chhhhhcCChhhhhHHHHhHHHHHHhhhc-
Confidence 35788999999999999999999999999997755 46677788888888889999999999987
Q ss_pred hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy8368 234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSS 310 (372)
Q Consensus 234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (372)
++|++-.|||-+|.+|+++++++.|.-.|++|++++|.|. .+.-.+...+.+.+..+ +.-..|.+.+...
T Consensus 484 ---~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns---vi~~~~g~~~~~~k~~d-~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 484 ---VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS---VILCHIGRIQHQLKRKD-KALQLYEKAIHLD 553 (638)
T ss_pred ---CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch---hHHhhhhHHHHHhhhhh-HHHHHHHHHHhcC
Confidence 8888888999999999999999999999999999999888 88888888887777664 3445555554433
No 46
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=5.1e-08 Score=95.06 Aligned_cols=96 Identities=20% Similarity=0.329 Sum_probs=76.0
Q ss_pred CCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCCCCCCCCC
Q psy8368 29 PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPA 108 (372)
Q Consensus 29 ~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g~~~~ip~ 108 (372)
++.||.|+|+|.|..+ |+.|.+.. .. .+.|.||+|.++|||+.+|.||+.|+...|.+.....|+...+ +
T Consensus 158 a~~gD~v~IDf~g~iD--g~~fegg~--ae-~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L-----a 227 (441)
T COG0544 158 AENGDRVTIDFEGSVD--GEEFEGGK--AE-NFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL-----A 227 (441)
T ss_pred cccCCEEEEEEEEEEc--CeeccCcc--cc-CeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh-----C
Confidence 8899999999999764 34676653 33 7899999999999999999999999999987777666666544 6
Q ss_pred CCcEEEEEEEEeeecCccccccccccccccc
Q psy8368 109 KADLLFEVHLINFSIDPQVVRSSADIESDFI 139 (372)
Q Consensus 109 ~~~~~~~iel~~~~~~~~~~~~~~~~~~~~~ 139 (372)
|.+..|.|+|..|. . ..++++.+.|.
T Consensus 228 GK~a~F~V~vkeVk-~----~elpEldDEfA 253 (441)
T COG0544 228 GKEATFKVKVKEVK-K----RELPELDDEFA 253 (441)
T ss_pred CCceEEEEEEEEEe-e----cCCCCCCHHHH
Confidence 77899999999998 2 33454544444
No 47
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.03 E-value=9.6e-09 Score=90.27 Aligned_cols=127 Identities=12% Similarity=0.116 Sum_probs=107.5
Q ss_pred ccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHH
Q psy8368 168 DKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFV 247 (372)
Q Consensus 168 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r 247 (372)
.++..+++..|++++...+.. ...+.++|.+|..+|+|++|+..++++++ ++|++..+++.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~---------------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~----l~P~~~~~~~~ 112 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN---------------SEQWALLGEYYLWRNDYDNALLAYRQALQ----LRGENAELYAA 112 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHH
Confidence 456677777777777775554 67899999999999999999999999998 99999999999
Q ss_pred HHHHH-HhcCC--HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcch
Q psy8368 248 WGKAL-IGLQE--WTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSSPSQHS 317 (372)
Q Consensus 248 ~a~a~-~~l~~--~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (372)
+|.++ ...|+ +++|+..++++++++|++. .++..++.+....+++.+ ....|++++......+.+.
T Consensus 113 lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~---~al~~LA~~~~~~g~~~~-Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 113 LATVLYYQAGQHMTPQTREMIDKALALDANEV---TALMLLASDAFMQADYAQ-AIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh---hHHHHHHHHHHHcCCHHH-HHHHHHHHHhhCCCCccHH
Confidence 99985 67787 5999999999999999999 999999999988888854 5567778777666654443
No 48
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.02 E-value=4.8e-09 Score=87.44 Aligned_cols=97 Identities=12% Similarity=-0.076 Sum_probs=84.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q psy8368 207 YRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEIL 286 (372)
Q Consensus 207 ~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~ 286 (372)
+.++|.++..+|+|++|+.+|++++. ++|.+..+++.+|.++..+|++++|+..|.++++++|++. .++..++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~---~a~~~lg 99 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM----AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP---EPVYQTG 99 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---HHHHHHH
Confidence 55789999999999999999999998 9999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCC
Q psy8368 287 KADLGNQQYQKETKARCMKMFSSSS 311 (372)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (372)
.+....++..+ ....|........
T Consensus 100 ~~l~~~g~~~e-Ai~~~~~Al~~~p 123 (144)
T PRK15359 100 VCLKMMGEPGL-AREAFQTAIKMSY 123 (144)
T ss_pred HHHHHcCCHHH-HHHHHHHHHHhCC
Confidence 99888776654 3344444444333
No 49
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.01 E-value=1.1e-09 Score=82.39 Aligned_cols=83 Identities=22% Similarity=0.388 Sum_probs=71.3
Q ss_pred ccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHH
Q psy8368 168 DKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFV 247 (372)
Q Consensus 168 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r 247 (372)
+|+|+.|+..|.+++...+..+ + ...++++|.||+++|+|++|+..+++ ++ .++.+...++-
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~---~----------~~~~~~la~~~~~~~~y~~A~~~~~~-~~----~~~~~~~~~~l 63 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP---N----------SAYLYNLAQCYFQQGKYEEAIELLQK-LK----LDPSNPDIHYL 63 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH---H----------HHHHHHHHHHHHHTTHHHHHHHHHHC-HT----HHHCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh---h----------HHHHHHHHHHHHHCCCHHHHHHHHHH-hC----CCCCCHHHHHH
Confidence 5899999999999999875421 1 45778899999999999999999999 65 78889999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q psy8368 248 WGKALIGLQEWTSAIKHLKTA 268 (372)
Q Consensus 248 ~a~a~~~l~~~e~A~~~~~~a 268 (372)
+|+|+..+|+|++|+..|++|
T Consensus 64 ~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 64 LARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhcC
Confidence 999999999999999999875
No 50
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.01 E-value=7.2e-09 Score=106.69 Aligned_cols=137 Identities=2% Similarity=-0.101 Sum_probs=121.3
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
..+..+...|......|.+++|...+..++.+.|.. ..++.|+|.++.+++++++|+..|+++|.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~---------------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS---------------SEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 347788899999999999999999999999998776 78999999999999999999999999998
Q ss_pred hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368 233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSS 312 (372)
Q Consensus 233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (372)
.+|++..+++.+|.++..+|+|++|+..|++++.-+|+++ .++-.++.+.+..++..+ ....|.+.+.....
T Consensus 149 ----~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~---~~~~~~a~~l~~~G~~~~-A~~~~~~a~~~~~~ 220 (694)
T PRK15179 149 ----GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFE---NGYVGWAQSLTRRGALWR-ARDVLQAGLDAIGD 220 (694)
T ss_pred ----cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHH-HHHHHHHHHHhhCc
Confidence 9999999999999999999999999999999999999999 999999999888877754 34455555444444
No 51
>KOG0553|consensus
Probab=99.00 E-value=9.2e-09 Score=92.86 Aligned_cols=108 Identities=17% Similarity=0.173 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q psy8368 206 VYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEI 285 (372)
Q Consensus 206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l 285 (372)
-+-+-|.-+++-++|.+|+..|++||+ ++|.|+--|.+||.||..||+|+.|+++++.|+.+||... .++..|
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~----l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys---kay~RL 155 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIE----LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS---KAYGRL 155 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh----cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH---HHHHHH
Confidence 344678889999999999999999998 9999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCcchHHHh
Q psy8368 286 LKADLGNQQYQKETKARCMKMFSSSSSPSQHSNVVR 321 (372)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (372)
..++..+.++.++... |++.+...+..+.-+...+
T Consensus 156 G~A~~~~gk~~~A~~a-ykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEA-YKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHccCcHHHHHHH-HHhhhccCCCcHHHHHHHH
Confidence 9999999999888777 9998887776543333333
No 52
>KOG4555|consensus
Probab=99.00 E-value=1.9e-08 Score=79.80 Aligned_cols=111 Identities=18% Similarity=0.150 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy8368 151 VLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKA 230 (372)
Q Consensus 151 ~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~a 230 (372)
.++....+--+|..+...|+.+.|++.|.++|.++|.. .+.|+|+|+++.-.|+..+|+.+.++|
T Consensus 39 ~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r---------------aSayNNRAQa~RLq~~~e~ALdDLn~A 103 (175)
T KOG4555|consen 39 AIKASRELELKAIALAEAGDLDGALELFGQALCLAPER---------------ASAYNNRAQALRLQGDDEEALDDLNKA 103 (175)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc---------------hHhhccHHHHHHHcCChHHHHHHHHHH
Confidence 46777888889999999999999999999999999876 699999999999999999999999999
Q ss_pred HHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 231 LQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 231 L~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
+++.....-.-..+|..+|..|..+|+-+.|..+|..|.++-...+
T Consensus 104 leLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 104 LELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 9843222222456899999999999999999999999999877644
No 53
>KOG0547|consensus
Probab=99.00 E-value=6e-09 Score=99.19 Aligned_cols=105 Identities=19% Similarity=0.239 Sum_probs=97.8
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
..+..+.-.|..+|-.|++..|...+..+|.+.+.. .++|..+|..|+...+-.+-..++.+|.+
T Consensus 324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~---------------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ 388 (606)
T KOG0547|consen 324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF---------------NSLYIKRAAAYADENQSEKMWKDFNKAED 388 (606)
T ss_pred HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc---------------chHHHHHHHHHhhhhccHHHHHHHHHHHh
Confidence 457888899999999999999999999999987665 46799999999999999999999999998
Q ss_pred hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
+||.|+..||.||+.++-+++|++|+.+|++|..|+|.|.
T Consensus 389 ----ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~ 428 (606)
T KOG0547|consen 389 ----LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA 428 (606)
T ss_pred ----cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh
Confidence 9999999999999999999999999999999999999987
No 54
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.99 E-value=1.1e-07 Score=93.16 Aligned_cols=85 Identities=19% Similarity=0.295 Sum_probs=73.7
Q ss_pred CCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCCCCCCCC
Q psy8368 28 NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIP 107 (372)
Q Consensus 28 ~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g~~~~ip 107 (372)
.+..||.|+++|+++. + |+.++++. .. ++.|.+|.+.+++||+.+|.||++|++..|.+++...|+..+.
T Consensus 146 ~~~~gD~V~v~~~~~~-d-g~~~~~~~--~~-~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~----- 215 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI-D-GEAFEGGK--AE-NFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL----- 215 (408)
T ss_pred ccCCCCEEEEEEEEEE-C-CEECcCCC--CC-CeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----
Confidence 4788999999999976 3 45787763 34 8999999999999999999999999999999998887876543
Q ss_pred CCCcEEEEEEEEeee
Q psy8368 108 AKADLLFEVHLINFS 122 (372)
Q Consensus 108 ~~~~~~~~iel~~~~ 122 (372)
+|.++.|.|+|.+|.
T Consensus 216 ~gk~~~f~v~i~~I~ 230 (408)
T TIGR00115 216 AGKEATFKVTVKEVK 230 (408)
T ss_pred CCCeEEEEEEEEEec
Confidence 688999999999998
No 55
>KOG1173|consensus
Probab=98.99 E-value=4e-09 Score=101.97 Aligned_cols=120 Identities=20% Similarity=0.188 Sum_probs=95.9
Q ss_pred HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368 157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH 236 (372)
Q Consensus 157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~ 236 (372)
.+++.|-.+|..+.|.+|+.+|+.++...+.... +.. ...++++|+|.+|.+++.|.+||.+++++|.
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-------e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~---- 483 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-------EKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALL---- 483 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-------ccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHH----
Confidence 3456666777777777777777777744322110 000 2357899999999999999999999999997
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368 237 FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG 291 (372)
Q Consensus 237 ~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~ 291 (372)
+.|.++.++.-+|.+|..+|+++.|++.|.+||.++|+|. .+...|+.+-..
T Consensus 484 l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~---~~~~lL~~aie~ 535 (611)
T KOG1173|consen 484 LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI---FISELLKLAIED 535 (611)
T ss_pred cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH---HHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998 777777765443
No 56
>KOG1155|consensus
Probab=98.98 E-value=5.6e-09 Score=98.81 Aligned_cols=125 Identities=13% Similarity=0.079 Sum_probs=110.7
Q ss_pred HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368 160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT 239 (372)
Q Consensus 160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p 239 (372)
-.||-|-.+++.++|+..|++|+++.+.. ..++.-+|.=|..+++-..|+..|++|++ ++|
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALkLNp~~---------------~~aWTLmGHEyvEmKNt~AAi~sYRrAvd----i~p 395 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALKLNPKY---------------LSAWTLMGHEYVEMKNTHAAIESYRRAVD----INP 395 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHhcCcch---------------hHHHHHhhHHHHHhcccHHHHHHHHHHHh----cCc
Confidence 46899999999999999999999998776 68899999999999999999999999998 999
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8368 240 KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMF 307 (372)
Q Consensus 240 ~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 307 (372)
.+.+|||-+|++|.-++...=|+-+|++|+++-|+|+ -++..|+.|..++....++. +.|++.+
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs---Rlw~aLG~CY~kl~~~~eAi-KCykrai 459 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDS---RLWVALGECYEKLNRLEEAI-KCYKRAI 459 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch---HHHHHHHHHHHHhccHHHHH-HHHHHHH
Confidence 9999999999999999999999999999999999999 89999999998877765544 4455443
No 57
>KOG0624|consensus
Probab=98.97 E-value=8.7e-09 Score=94.24 Aligned_cols=117 Identities=14% Similarity=0.093 Sum_probs=103.8
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
..+..+.+.|+.++..|+|..|+.+|-.|+...+.. ...++.+|.+|+.+|+-.-|+.+++++|+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~---------------Y~aifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN---------------YQAIFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---------------HHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence 457888999999999999999999999999987654 57889999999999999999999999998
Q ss_pred hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368 233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKA 288 (372)
Q Consensus 233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~ 288 (372)
+.|+..-|...||.+++++|++++|..+|+.+|..+|++....++...+..+
T Consensus 101 ----lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~ 152 (504)
T KOG0624|consen 101 ----LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI 152 (504)
T ss_pred ----cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH
Confidence 9999999999999999999999999999999999999887333444444443
No 58
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.97 E-value=1.3e-08 Score=87.12 Aligned_cols=109 Identities=17% Similarity=0.059 Sum_probs=92.0
Q ss_pred HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368 152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKAL 231 (372)
Q Consensus 152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL 231 (372)
...+..+...|..++..|+|.+|+..|.+|+.+.+... ....++.|+|.+|.++|++++|+.+|.+++
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY------------DRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35788999999999999999999999999998853210 114589999999999999999999999999
Q ss_pred HhhccCCCCchhHHHHHHHHHH-------hcCCHH-------HHHHHHHHHHhhcCCCc
Q psy8368 232 QFASHFATKDVKLFFVWGKALI-------GLQEWT-------SAIKHLKTARKLAAKDS 276 (372)
Q Consensus 232 ~~~~~~~p~~~ka~~r~a~a~~-------~l~~~e-------~A~~~~~~al~l~p~~~ 276 (372)
. ++|.+..+++.+|.+|. .+|+++ +|+..+++++..+|.+.
T Consensus 100 ~----~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 100 E----RNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred H----hCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 8 89999999999999999 777776 55666667788888765
No 59
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.97 E-value=1.2e-08 Score=88.70 Aligned_cols=137 Identities=11% Similarity=0.013 Sum_probs=102.7
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCC-------------hHHHHHHHH------HHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTN-------------YEDQMQLEE------YLCRVYRNLMVC 213 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~-------------~~~~~~~~~------l~~~l~~Nla~~ 213 (372)
..+......|-.|+..|++..|..-.++||+..+.....+ +...+..+. -...++||.|.-
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 4566666777777777777777777777777654432111 001111111 114689999999
Q ss_pred HHHccCHHHHHHHHHHHHHhhccCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy8368 214 YNNNKQYKLTCDCASKALQFASHFATK---DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADL 290 (372)
Q Consensus 214 ~~kl~~y~~Ai~~~~~aL~~~~~~~p~---~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~ 290 (372)
++..|+|++|..++++|+. +|. ..+.+-++|.|.+..|+++.|..+|+++++++|+++ .....+.....
T Consensus 113 LC~qg~~~eA~q~F~~Al~-----~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~---~~~l~~a~~~~ 184 (250)
T COG3063 113 LCAQGRPEEAMQQFERALA-----DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP---PALLELARLHY 184 (250)
T ss_pred HHhCCChHHHHHHHHHHHh-----CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC---hHHHHHHHHHH
Confidence 9999999999999999994 555 678999999999999999999999999999999999 88877777776
Q ss_pred HHHHHHH
Q psy8368 291 GNQQYQK 297 (372)
Q Consensus 291 ~~~~~~~ 297 (372)
...++-.
T Consensus 185 ~~~~y~~ 191 (250)
T COG3063 185 KAGDYAP 191 (250)
T ss_pred hcccchH
Confidence 6666643
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.97 E-value=2.3e-08 Score=88.37 Aligned_cols=121 Identities=16% Similarity=0.080 Sum_probs=82.6
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS 235 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~ 235 (372)
..+...|..++..|++.+|+..|.+++...+.. ...+.++|.++...|+|++|+..+.+++...
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~- 129 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNN---------------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP- 129 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-
Confidence 445556666677777777777777776654332 3466777777778888888888888777511
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368 236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ 296 (372)
Q Consensus 236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~ 296 (372)
..+.....++.+|.++...|++++|...|.+++..+|++. .+...+..+....+++.
T Consensus 130 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 130 -LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRP---ESLLELAELYYLRGQYK 186 (234)
T ss_pred -ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh---HHHHHHHHHHHHcCCHH
Confidence 1244566777778888888888888888888888887777 66666666666555554
No 61
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.94 E-value=3.4e-09 Score=76.38 Aligned_cols=66 Identities=23% Similarity=0.298 Sum_probs=61.2
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNK-QYKLTCDCASKALQF 233 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~-~y~~Ai~~~~~aL~~ 233 (372)
+..+...|..++..|+|.+|+..|.+|+++.+.. ..+++|+|.||.++| +|.+|+.+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---------------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~- 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN---------------AEAYYNLGLAYMKLGKDYEEAIEDFEKALK- 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---------------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhCccHHHHHHHHHHHHH-
Confidence 6788999999999999999999999999997654 689999999999999 79999999999998
Q ss_pred hccCCC
Q psy8368 234 ASHFAT 239 (372)
Q Consensus 234 ~~~~~p 239 (372)
++|
T Consensus 67 ---l~P 69 (69)
T PF13414_consen 67 ---LDP 69 (69)
T ss_dssp ---HST
T ss_pred ---cCc
Confidence 776
No 62
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.94 E-value=1.6e-08 Score=104.76 Aligned_cols=114 Identities=17% Similarity=0.153 Sum_probs=86.5
Q ss_pred hHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhhccC
Q psy8368 162 GKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKL----TCDCASKALQFASHF 237 (372)
Q Consensus 162 Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~----Ai~~~~~aL~~~~~~ 237 (372)
|..++..|++.+|+..|.+++...+.. ..+++++|.+|..+|++.+ |+..|+++++ +
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~p~~---------------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~----l 279 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARGLDG---------------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ----F 279 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh----h
Confidence 555666677777777777766654332 4677788888888888875 7888888887 7
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHH
Q psy8368 238 ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQK 297 (372)
Q Consensus 238 ~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~ 297 (372)
+|++..++..+|.++..+|++++|+..++++++++|++. .++..++.+....+++.+
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~---~a~~~La~~l~~~G~~~e 336 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP---YVRAMYARALRQVGQYTA 336 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHH
Confidence 888888888888888888888888888888888888888 777777777666655543
No 63
>PRK15331 chaperone protein SicA; Provisional
Probab=98.94 E-value=2.7e-08 Score=82.94 Aligned_cols=104 Identities=15% Similarity=0.162 Sum_probs=92.1
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
+..+.....|-.+|.+|++.+|...|+-...+.+.. ...+..+|.|+..+++|++|+..|..+.-
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n---------------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~ 99 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN---------------PDYTMGLAAVCQLKKQFQKACDLYAVAFT 99 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788999999999999999998877764443 56789999999999999999999999996
Q ss_pred hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
++++++...|+.|.||+.+|+.+.|+.+|..|+. .|.+.
T Consensus 100 ----l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 100 ----LLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred ----cccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 8999999999999999999999999999999999 56665
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=98.94 E-value=2.3e-08 Score=101.68 Aligned_cols=104 Identities=13% Similarity=0.069 Sum_probs=86.8
Q ss_pred HHHHHHHhhHH--HHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368 154 RAQELGASGKN--AFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKAL 231 (372)
Q Consensus 154 ~~~~~k~~Gn~--~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL 231 (372)
.+..+...++. +...+++.+|+..+++|+.+.|.. ..++.++|.++...|++++|+..+++++
T Consensus 301 La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al 365 (553)
T PRK12370 301 LAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN---------------PQALGLLGLINTIHSEYIVGSLLFKQAN 365 (553)
T ss_pred HHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45555555542 235677899999999999886655 5678888999999999999999999999
Q ss_pred HhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 232 QFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 232 ~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
+ ++|+++.+++.+|.+|..+|++++|+..|+++++++|.+.
T Consensus 366 ~----l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~ 406 (553)
T PRK12370 366 L----LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA 406 (553)
T ss_pred H----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence 7 8999999999999999999999999999999999999887
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.93 E-value=3.8e-08 Score=86.99 Aligned_cols=133 Identities=12% Similarity=0.121 Sum_probs=107.7
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
..+..+...|..++..|+|.+|+..|.+++...+.. ..++.++|.+|..+|++++|+..++++++
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~ 93 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD---------------YLAYLALALYYQQLGELEKAEDSFRRALT 93 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346778889999999999999999999999875443 46888999999999999999999999998
Q ss_pred hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8368 233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA--AKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFS 308 (372)
Q Consensus 233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~--p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
.+|.+..+++++|.++...|++++|+..|.+++... |... .+...++.+....++..+ ....+.+.+.
T Consensus 94 ----~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 163 (234)
T TIGR02521 94 ----LNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPA---RSLENAGLCALKAGDFDK-AEKYLTRALQ 163 (234)
T ss_pred ----hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccch---HHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Confidence 889999999999999999999999999999999864 3344 556666666655555543 3333444433
No 66
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.92 E-value=2.6e-08 Score=106.35 Aligned_cols=101 Identities=11% Similarity=0.099 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK 283 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~ 283 (372)
...+.|+|.++.++|++++|+..+++++. ++|+++.+++++|.++..+|++++|+..|++|++++|+++ .++.
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~----l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~---~a~~ 681 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALE----LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP---ALIR 681 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHH
Confidence 36789999999999999999999999998 9999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368 284 EILKADLGNQQYQKETKARCMKMFSSSSS 312 (372)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (372)
.++.+....++...+. ..+.+.+....+
T Consensus 682 nLA~al~~lGd~~eA~-~~l~~Al~l~P~ 709 (987)
T PRK09782 682 QLAYVNQRLDDMAATQ-HYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHCCCHHHHH-HHHHHHHhcCCC
Confidence 9999999888876544 456666554443
No 67
>KOG1155|consensus
Probab=98.91 E-value=4.2e-08 Score=92.97 Aligned_cols=131 Identities=21% Similarity=0.178 Sum_probs=117.0
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~ 233 (372)
....+--.|..|...++-..|+..|++|+++.|.. ...++.+|++|--++.+.=|+-++++|+.
T Consensus 363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D---------------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~- 426 (559)
T KOG1155|consen 363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD---------------YRAWYGLGQAYEIMKMHFYALYYFQKALE- 426 (559)
T ss_pred hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh---------------HHHHhhhhHHHHHhcchHHHHHHHHHHHh-
Confidence 34566678999999999999999999999998765 68899999999999999999999999997
Q ss_pred hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8368 234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMF 307 (372)
Q Consensus 234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 307 (372)
+.|++...|.-+|.||.++++.++|+.+|.+|+.....+. .+.-.|+++.+++++..++. +.|.+.+
T Consensus 427 ---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~---~~l~~LakLye~l~d~~eAa-~~yek~v 493 (559)
T KOG1155|consen 427 ---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG---SALVRLAKLYEELKDLNEAA-QYYEKYV 493 (559)
T ss_pred ---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch---HHHHHHHHHHHHHHhHHHHH-HHHHHHH
Confidence 9999999999999999999999999999999999999988 89999999999998886554 3444443
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=98.90 E-value=2.7e-08 Score=101.13 Aligned_cols=70 Identities=14% Similarity=-0.009 Sum_probs=35.8
Q ss_pred cCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy8368 218 KQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQ 294 (372)
Q Consensus 218 ~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~ 294 (372)
+++.+|+..++++++ ++|++..++..+|.++..+|++++|+..|++|++++|+++ .++..++.+....++
T Consensus 318 ~~~~~A~~~~~~Al~----ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~---~a~~~lg~~l~~~G~ 387 (553)
T PRK12370 318 NAMIKAKEHAIKATE----LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA---DIKYYYGWNLFMAGQ 387 (553)
T ss_pred hHHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCC
Confidence 445555555555554 5555555555555555555555555555555555555555 444444444443333
No 69
>KOG1126|consensus
Probab=98.89 E-value=1.6e-08 Score=99.64 Aligned_cols=122 Identities=12% Similarity=0.092 Sum_probs=81.5
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~ 233 (372)
.-.++.-.|..|.++++|+.|..+|++|+.+.|.. ..+..-+|..+.++|+.++|+..+++|+.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n---------------svi~~~~g~~~~~~k~~d~AL~~~~~A~~- 551 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN---------------SVILCHIGRIQHQLKRKDKALQLYEKAIH- 551 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc---------------hhHHhhhhHHHHHhhhhhHHHHHHHHHHh-
Confidence 34555566666666666666666666666665443 34445566667777777777777777775
Q ss_pred hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHH
Q psy8368 234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQK 297 (372)
Q Consensus 234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~ 297 (372)
+||.|+-..|.+|.++..+++|++|+..|+...++.|++. .+...++++.++++....
T Consensus 552 ---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es---~v~~llgki~k~~~~~~~ 609 (638)
T KOG1126|consen 552 ---LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQES---SVFALLGKIYKRLGNTDL 609 (638)
T ss_pred ---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchH---HHHHHHHHHHHHHccchH
Confidence 7777777777777777777777777777777777777777 777777777666665543
No 70
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.89 E-value=3e-08 Score=81.26 Aligned_cols=114 Identities=11% Similarity=0.023 Sum_probs=95.1
Q ss_pred HHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhc
Q psy8368 176 RRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGL 255 (372)
Q Consensus 176 ~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l 255 (372)
..|.+++...+.. .....++|.++++.++|.+|+..+++++. .+|.+..+++++|.++..+
T Consensus 4 ~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~~la~~~~~~ 64 (135)
T TIGR02552 4 ATLKDLLGLDSEQ---------------LEQIYALAYNLYQQGRYDEALKLFQLLAA----YDPYNSRYWLGLAACCQML 64 (135)
T ss_pred hhHHHHHcCChhh---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHH
Confidence 3566777665443 46688999999999999999999999997 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368 256 QEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSS 312 (372)
Q Consensus 256 ~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (372)
|++++|+..|+++++++|.+. ..+..++.+....+++.. ....+.+.+...+.
T Consensus 65 ~~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~ 117 (135)
T TIGR02552 65 KEYEEAIDAYALAAALDPDDP---RPYFHAAECLLALGEPES-ALKALDLAIEICGE 117 (135)
T ss_pred HHHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcCCHHH-HHHHHHHHHHhccc
Confidence 999999999999999999999 999999998887776544 33455655554443
No 71
>PRK01490 tig trigger factor; Provisional
Probab=98.89 E-value=5.5e-07 Score=88.89 Aligned_cols=85 Identities=19% Similarity=0.262 Sum_probs=72.9
Q ss_pred CCCCCCEEEEEEEEEEcCCceeEeecccCCCcCeEEEcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCCCCCCCC
Q psy8368 28 NPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIP 107 (372)
Q Consensus 28 ~~~~g~~V~v~y~~~~~~~~~~~dst~~~~~~~~~~~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g~~~~ip 107 (372)
.+..||.|+++|++.. + |+.|+++. .. ++.|.+|.+.+++||+.+|.||++|++..|.++....|+....
T Consensus 157 ~~~~gD~V~vd~~~~~-~-g~~~~~~~--~~-~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l----- 226 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-D-GEEFEGGK--AE-DFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL----- 226 (435)
T ss_pred cCCCCCEEEEEEEEEE-C-CEECcCCC--CC-ceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC-----
Confidence 3789999999999987 3 45777753 34 8999999999999999999999999999999988777766443
Q ss_pred CCCcEEEEEEEEeee
Q psy8368 108 AKADLLFEVHLINFS 122 (372)
Q Consensus 108 ~~~~~~~~iel~~~~ 122 (372)
+|.++.|.|+|.++.
T Consensus 227 agk~~~f~v~v~~V~ 241 (435)
T PRK01490 227 AGKEATFKVTVKEVK 241 (435)
T ss_pred CCCeEEEEEEEEEec
Confidence 678999999999998
No 72
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.86 E-value=1.5e-08 Score=74.89 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368 202 YLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK---DVKLFFVWGKALIGLQEWTSAIKHLKTARKLA 272 (372)
Q Consensus 202 l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~---~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~ 272 (372)
....+++|+|.+|..+|+|++|+.++++++++.....++ -+.+++++|.+|..+|++++|++++++|+++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 347899999999999999999999999999876556544 36689999999999999999999999999874
No 73
>KOG1125|consensus
Probab=98.86 E-value=6.8e-09 Score=100.69 Aligned_cols=99 Identities=19% Similarity=0.208 Sum_probs=92.5
Q ss_pred HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368 157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH 236 (372)
Q Consensus 157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~ 236 (372)
..--.|-.|+-.|+|++|+.+|+.||..-|.. ..+++.+|..+..-.+..+||..|++||+
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd---------------~~lWNRLGAtLAN~~~s~EAIsAY~rALq---- 492 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQVKPND---------------YLLWNRLGATLANGNRSEEAISAYNRALQ---- 492 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHhcCCch---------------HHHHHHhhHHhcCCcccHHHHHHHHHHHh----
Confidence 34467889999999999999999999986655 68999999999999999999999999998
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q psy8368 237 FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK 274 (372)
Q Consensus 237 ~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~ 274 (372)
+.|..+.+.|++|.+|+.+|.|.+|..+|..||.+.+.
T Consensus 493 LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 493 LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999887
No 74
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.85 E-value=3e-07 Score=83.41 Aligned_cols=156 Identities=12% Similarity=0.142 Sum_probs=122.4
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA 234 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~ 234 (372)
+..+...|..++..|+|.+|+..|++.+...|..+ ......+++|.+|+++++|.+|+..+++.++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~------------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~-- 97 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP------------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIR-- 97 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Confidence 55577899999999999999999999999876542 2245678999999999999999999999998
Q ss_pred ccCCCCc---hhHHHHHHHHHHhcC---------------C---HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368 235 SHFATKD---VKLFFVWGKALIGLQ---------------E---WTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ 293 (372)
Q Consensus 235 ~~~~p~~---~ka~~r~a~a~~~l~---------------~---~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~ 293 (372)
..|++ ..++|.+|.++..++ + ...|+..|+..++.-|+.....+++..+..++.++.
T Consensus 98 --~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 98 --LNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred --hCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence 66664 558999999976654 1 357889999999999999888889999999988887
Q ss_pred HHHHHHHHHHHhhccCCCCCCcchHHHhhhhhhccCC
Q psy8368 294 QYQKETKARCMKMFSSSSSPSQHSNVVRIAYQEHEQV 330 (372)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (372)
...-...+.|-+ .+....+...++..+..-|..
T Consensus 176 ~~e~~ia~~Y~~----~~~y~AA~~r~~~v~~~Yp~t 208 (243)
T PRK10866 176 KYELSVAEYYTK----RGAYVAVVNRVEQMLRDYPDT 208 (243)
T ss_pred HHHHHHHHHHHH----cCchHHHHHHHHHHHHHCCCC
Confidence 776655554544 223334666677666666654
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.83 E-value=5.7e-08 Score=90.96 Aligned_cols=112 Identities=13% Similarity=0.005 Sum_probs=93.5
Q ss_pred cCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHH
Q psy8368 169 KNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVW 248 (372)
Q Consensus 169 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~ 248 (372)
+..+.++..+.++|...+..+ ......|+++|.+|..+|++.+|+.+++++++ ++|+++.+|+.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~-----------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~----l~P~~~~a~~~l 104 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTD-----------EERAQLHYERGVLYDSLGLRALARNDFSQALA----LRPDMADAYNYL 104 (296)
T ss_pred hHHHHHHHHHHHHHccccCCc-----------HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCCHHHHHHH
Confidence 356677888888886432211 11256799999999999999999999999998 999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368 249 GKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKE 298 (372)
Q Consensus 249 a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~ 298 (372)
|.+|..+|++++|+..|+++++++|++. .++..++.+....+.+.++
T Consensus 105 g~~~~~~g~~~~A~~~~~~Al~l~P~~~---~a~~~lg~~l~~~g~~~eA 151 (296)
T PRK11189 105 GIYLTQAGNFDAAYEAFDSVLELDPTYN---YAYLNRGIALYYGGRYELA 151 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999 8888888877666555443
No 76
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.82 E-value=8.8e-08 Score=99.26 Aligned_cols=133 Identities=12% Similarity=0.077 Sum_probs=109.1
Q ss_pred HHHHHHhhHHHHhccCHHH----HHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy8368 155 AQELGASGKNAFNDKNIVS----AVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKA 230 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~----A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~a 230 (372)
...+...|..++..|++.+ |+..|++++...|.. ..++.++|.++.++|++++|+..++++
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~l~~~g~~~eA~~~l~~a 310 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN---------------VRIVTLYADALIRTGQNEKAIPLLQQS 310 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3456678999999999986 899999999987654 678999999999999999999999999
Q ss_pred HHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy8368 231 LQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSS 310 (372)
Q Consensus 231 L~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (372)
+. ++|++..+++.+|.+|..+|++++|+..|++++..+|++. .+...+..+....++.. .....|.+.....
T Consensus 311 l~----l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~---~~~~~~a~al~~~G~~d-eA~~~l~~al~~~ 382 (656)
T PRK15174 311 LA----THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS---KWNRYAAAALLQAGKTS-EAESVFEHYIQAR 382 (656)
T ss_pred HH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch---HHHHHHHHHHHHCCCHH-HHHHHHHHHHHhC
Confidence 98 8999999999999999999999999999999999999987 65555555555555443 3334455554443
No 77
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.81 E-value=2e-07 Score=102.77 Aligned_cols=127 Identities=12% Similarity=0.093 Sum_probs=100.7
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA 234 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~ 234 (372)
...+...|..+++.|++++|+..|+++++..+...... .-...+......+..++|.++++.|++++|+..|+++++
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~-~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~-- 379 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD-KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ-- 379 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh-HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 45667788888899999999999999888765432110 001111222234556778999999999999999999998
Q ss_pred ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q psy8368 235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKAD 289 (372)
Q Consensus 235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~ 289 (372)
.+|++..+++.+|.+|..+|++++|+..|+++++++|++. .+...+..+.
T Consensus 380 --~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~---~a~~~L~~l~ 429 (1157)
T PRK11447 380 --VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT---NAVRGLANLY 429 (1157)
T ss_pred --hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 7777666654
No 78
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.81 E-value=2.6e-08 Score=72.53 Aligned_cols=69 Identities=19% Similarity=0.336 Sum_probs=63.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q psy8368 211 MVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEIL 286 (372)
Q Consensus 211 a~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~ 286 (372)
...|++.++|.+|+.++++++. ++|+++.+++.+|.+|..+|++.+|+.+|.++++++|++. .+.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~----~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~---~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALE----LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP---DARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH----hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH---HHHHHHH
Confidence 5678999999999999999998 9999999999999999999999999999999999999998 5554433
No 79
>KOG0550|consensus
Probab=98.80 E-value=1.6e-08 Score=94.63 Aligned_cols=93 Identities=15% Similarity=0.187 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy8368 150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASK 229 (372)
Q Consensus 150 ~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~ 229 (372)
+-...++..+.+||.++++..|.+|+..|+.||+.++.. +..|.|+|.+++.+++|++|+.++++
T Consensus 44 ~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~---------------a~yy~nRAa~~m~~~~~~~a~~dar~ 108 (486)
T KOG0550|consen 44 EAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN---------------ASYYSNRAATLMMLGRFEEALGDARQ 108 (486)
T ss_pred hHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc---------------hhhhchhHHHHHHHHhHhhcccchhh
Confidence 346789999999999999999999999999999998776 68899999999999999999998887
Q ss_pred HHHhhccCCCCchhHHHHHHHHHHhcCCHHHH
Q psy8368 230 ALQFASHFATKDVKLFFVWGKALIGLQEWTSA 261 (372)
Q Consensus 230 aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A 261 (372)
.++ ++|...+++.|.++|+..+++..+|
T Consensus 109 ~~r----~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 109 SVR----LKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred hee----cCCCccccccchhhhhhhhHHHHHH
Confidence 776 6555555555555555544444333
No 80
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.80 E-value=3.4e-08 Score=91.62 Aligned_cols=122 Identities=19% Similarity=0.097 Sum_probs=98.6
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA 234 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~ 234 (372)
...+...|+.+.+.|++.+|+..|++|++..|.. ..+..+++.+++..|++.++...+....+
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~---------------~~~~~~l~~~li~~~~~~~~~~~l~~~~~-- 208 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDD---------------PDARNALAWLLIDMGDYDEAREALKRLLK-- 208 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT----------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHCCChHHHHHHHHHHHH--
Confidence 4567789999999999999999999999997765 56788899999999999998888888886
Q ss_pred ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368 235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKE 298 (372)
Q Consensus 235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~ 298 (372)
..|+++..+..+|.+|..+|++++|+..|+++++.+|+|+ .+...++.+....+...++
T Consensus 209 --~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~---~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 209 --AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP---LWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp --H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H---HHHHHHHHHHT--------
T ss_pred --HCcCHHHHHHHHHHHhcccccccccccccccccccccccc---ccccccccccccccccccc
Confidence 5577888889999999999999999999999999999999 9999999888887776544
No 81
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.79 E-value=1.3e-07 Score=83.92 Aligned_cols=122 Identities=19% Similarity=0.180 Sum_probs=110.4
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS 235 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~ 235 (372)
..+...|..+++.|+|..|+..+.++...-+.. ..+++-+|.||.++|+++.|...|.++++
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d---------------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--- 162 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD---------------WEAWNLLGAALDQLGRFDEARRAYRQALE--- 162 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC---------------hhhhhHHHHHHHHccChhHHHHHHHHHHH---
Confidence 345559999999999999999999999986554 67899999999999999999999999998
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Q psy8368 236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKET 299 (372)
Q Consensus 236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~ 299 (372)
+.|+++.++-++|..|+-.|+++.|...+..+...-+.+. .+...|..+..........+
T Consensus 163 -L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~---~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 163 -LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS---RVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred -hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch---HHHHHHHHHHhhcCChHHHH
Confidence 9999999999999999999999999999999999999899 89999998888777665544
No 82
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.79 E-value=3.3e-07 Score=80.96 Aligned_cols=156 Identities=10% Similarity=0.053 Sum_probs=116.2
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~ 233 (372)
.+..+...|..++..|+|.+|+..|++.+...|..+. ...+.+.+|.++++.++|..|+..+++.++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~- 70 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------------APQAQLMLAYAYYKQGDYEEAIAAYERFIK- 70 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 3678889999999999999999999999998876531 145778999999999999999999999998
Q ss_pred hccCCCCc---hhHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Q psy8368 234 ASHFATKD---VKLFFVWGKALIGLQ-----------EWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKET 299 (372)
Q Consensus 234 ~~~~~p~~---~ka~~r~a~a~~~l~-----------~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~ 299 (372)
..|++ ..|+|.+|.+++.+. ...+|+..|+..+..-|+......+...+..++..+....-..
T Consensus 71 ---~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i 147 (203)
T PF13525_consen 71 ---LYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI 147 (203)
T ss_dssp ---H-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55664 458999999987653 3458999999999999999988889999998888877665544
Q ss_pred HHHHHhhccCCCCCCcchHHHhhhhhhccC
Q psy8368 300 KARCMKMFSSSSSPSQHSNVVRIAYQEHEQ 329 (372)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (372)
...|-+ .+....+...++..+..-|.
T Consensus 148 a~~Y~~----~~~y~aA~~r~~~v~~~yp~ 173 (203)
T PF13525_consen 148 ARFYYK----RGKYKAAIIRFQYVIENYPD 173 (203)
T ss_dssp HHHHHC----TT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHH----cccHHHHHHHHHHHHHHCCC
Confidence 433333 23333455556666655554
No 83
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.76 E-value=2e-08 Score=72.09 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=61.8
Q ss_pred HHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368 214 YNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKA 288 (372)
Q Consensus 214 ~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~ 288 (372)
+++.|+|++|+..+++++. .+|++..+++.+|.||+.+|++++|...+.+++..+|+++ .++..++++
T Consensus 1 ll~~~~~~~A~~~~~~~l~----~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~---~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQ----RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP---EYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHH----HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH---HHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH---HHHHHHhcC
Confidence 3678999999999999998 9999999999999999999999999999999999999998 777776653
No 84
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.76 E-value=2.1e-07 Score=85.14 Aligned_cols=104 Identities=10% Similarity=-0.056 Sum_probs=88.8
Q ss_pred HHHHhhHHH-HhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368 157 ELGASGKNA-FNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS 235 (372)
Q Consensus 157 ~~k~~Gn~~-~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~ 235 (372)
.....+-.+ ++.|+|.+|+..|...+...|.... ...+++-+|.+|+..|+|++|+..+..+++
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~------------a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~--- 208 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY------------QPNANYWLGQLNYNKGKKDDAAYYFASVVK--- 208 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Confidence 334455554 5679999999999999999876531 135788999999999999999999999997
Q ss_pred cCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 236 HFATK---DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 236 ~~~p~---~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
..|+ ...+++++|.++..+|++++|+..|+++++..|+..
T Consensus 209 -~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 209 -NYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred -HCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 5555 677999999999999999999999999999999988
No 85
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.76 E-value=2.2e-07 Score=75.83 Aligned_cols=106 Identities=11% Similarity=0.157 Sum_probs=94.0
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA 234 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~ 234 (372)
...+...|...++.|+|..|+..++......|..+-. ....++++-+|++.++|.+|+..+++-++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya------------~qAqL~l~yayy~~~~y~~A~a~~~rFir-- 75 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA------------EQAQLDLAYAYYKQGDYEEAIAAYDRFIR-- 75 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH--
Confidence 5678889999999999999999999988887765422 35778999999999999999999999998
Q ss_pred ccCCCCchh---HHHHHHHHHHhcCC---------------HHHHHHHHHHHHhhcCCCc
Q psy8368 235 SHFATKDVK---LFFVWGKALIGLQE---------------WTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 235 ~~~~p~~~k---a~~r~a~a~~~l~~---------------~e~A~~~~~~al~l~p~~~ 276 (372)
++|++.+ |+|++|.+++.+.. ...|+.+|++.+..-|++.
T Consensus 76 --LhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 76 --LHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred --hCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 8888766 89999999999987 8899999999999999987
No 86
>PLN02789 farnesyltranstransferase
Probab=98.76 E-value=8e-07 Score=83.75 Aligned_cols=116 Identities=6% Similarity=-0.059 Sum_probs=95.3
Q ss_pred HHHHHHHhhHHHHhcc-CHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCH--HHHHHHHHHH
Q psy8368 154 RAQELGASGKNAFNDK-NIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQY--KLTCDCASKA 230 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y--~~Ai~~~~~a 230 (372)
..+.+..+|..+...| .+.+|+..+.+++...++. ..++++++.++.+++.+ .+++.+++++
T Consensus 70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn---------------yqaW~~R~~~l~~l~~~~~~~el~~~~ka 134 (320)
T PLN02789 70 NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN---------------YQIWHHRRWLAEKLGPDAANKELEFTRKI 134 (320)
T ss_pred hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc---------------hHHhHHHHHHHHHcCchhhHHHHHHHHHH
Confidence 3456667777777777 5788888888888776655 56788899888888874 7889999999
Q ss_pred HHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368 231 LQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG 291 (372)
Q Consensus 231 L~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~ 291 (372)
|+ .+|.|..||..++.++..+|+|++|++++.++++++|.|. .++.....+...
T Consensus 135 l~----~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~---sAW~~R~~vl~~ 188 (320)
T PLN02789 135 LS----LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN---SAWNQRYFVITR 188 (320)
T ss_pred HH----hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch---hHHHHHHHHHHh
Confidence 97 9999999999999999999999999999999999999998 877777766543
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.76 E-value=4e-07 Score=79.41 Aligned_cols=125 Identities=15% Similarity=0.100 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK 283 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~ 283 (372)
...+.-||.-|+..|++..|..-.++||+ .||++..+|.-+|..|..+|+.+.|.+.|++|++++|+|. ++.+
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~----~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G---dVLN 107 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALE----HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG---DVLN 107 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc---chhh
Confidence 46677889999999999999999999998 9999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-------------------ccCCCCCCcchHHHhhhhhhccCCCccccc
Q psy8368 284 EILKADLGNQQYQKETKARCMKM-------------------FSSSSSPSQHSNVVRIAYQEHEQVRPATLQ 336 (372)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (372)
..+--.-..+.+.+... .+.+. .-+.+...++..-+++++...|+..+..++
T Consensus 108 NYG~FLC~qg~~~eA~q-~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~ 178 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQ-QFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLE 178 (250)
T ss_pred hhhHHHHhCCChHHHHH-HHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHH
Confidence 99887777775554433 33332 222233445777788888888876654443
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.75 E-value=5e-07 Score=81.38 Aligned_cols=128 Identities=9% Similarity=-0.002 Sum_probs=105.9
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHc--------cCHHHHHHHH
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNN--------KQYKLTCDCA 227 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl--------~~y~~Ai~~~ 227 (372)
..+...|..++..|++.+|+..|.++++..|..+.. ...++++|.|+.++ +++.+|+..+
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~ 138 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF 138 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 456788999999999999999999999987654311 23678889999876 8999999999
Q ss_pred HHHHHhhccCCCCchhHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy8368 228 SKALQFASHFATKDVKLF-----------------FVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADL 290 (372)
Q Consensus 228 ~~aL~~~~~~~p~~~ka~-----------------~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~ 290 (372)
+++++ .+|++..++ +.+|.+|...|++.+|+..|.+++...|+++..+.++..+..+..
T Consensus 139 ~~~~~----~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~ 214 (235)
T TIGR03302 139 QELIR----RYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYL 214 (235)
T ss_pred HHHHH----HCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHH
Confidence 99998 788876442 467889999999999999999999998877544578888888888
Q ss_pred HHHHHHHHH
Q psy8368 291 GNQQYQKET 299 (372)
Q Consensus 291 ~~~~~~~~~ 299 (372)
..+++.+..
T Consensus 215 ~lg~~~~A~ 223 (235)
T TIGR03302 215 KLGLKDLAQ 223 (235)
T ss_pred HcCCHHHHH
Confidence 887776554
No 89
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.74 E-value=1.5e-07 Score=78.11 Aligned_cols=101 Identities=8% Similarity=0.042 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK 283 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~ 283 (372)
....+.+|.-++..|++++|...++.+.. +||.+...|+++|.|+..+|+|++|+..|.+|+.++|+|+ ....
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~----~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp---~~~~ 107 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTI----YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP---QAPW 107 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---hHHH
Confidence 45667789999999999999999999997 9999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368 284 EILKADLGNQQYQKETKARCMKMFSSSSS 312 (372)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (372)
.++.|.-.+++.. ..++.++.....+..
T Consensus 108 ~ag~c~L~lG~~~-~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 108 AAAECYLACDNVC-YAIKALKAVVRICGE 135 (157)
T ss_pred HHHHHHHHcCCHH-HHHHHHHHHHHHhcc
Confidence 9999998888764 455566665555543
No 90
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.71 E-value=3.3e-07 Score=97.25 Aligned_cols=133 Identities=14% Similarity=0.071 Sum_probs=92.1
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS 235 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~ 235 (372)
..+...|..+.+.|++.+|+..|.+++...+.. ..+++++|.+|.++|++.+|+..++++++
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~--- 798 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND---------------AVLRTALAELYLAQKDYDKAIKHYRTVVK--- 798 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCcCHHHHHHHHHHHHH---
Confidence 345567777788888888888888877765433 45667777777777777777777777776
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368 236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSS 312 (372)
Q Consensus 236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (372)
.+|+++.++.++|.++..+|+ .+|+..+++++.+.|+++ .+...++.+....++..+ ....+++++.....
T Consensus 799 -~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~-A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 799 -KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIP---AILDTLGWLLVEKGEADR-ALPLLRKAVNIAPE 869 (899)
T ss_pred -hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHcCCHHH-HHHHHHHHHhhCCC
Confidence 677777777777777777777 667777777777777777 666666666655555533 33456666555544
No 91
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.70 E-value=3.6e-07 Score=94.30 Aligned_cols=118 Identities=7% Similarity=0.004 Sum_probs=102.3
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~ 233 (372)
.+......++.+++.+++++|+..+++++...+.. ...++++|.|+.++|+|++|+..|++++.
T Consensus 119 ~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~---------------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~- 182 (694)
T PRK15179 119 SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS---------------AREILLEAKSWDEIGQSEQADACFERLSR- 182 (694)
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC---------------HHHHHHHHHHHHHhcchHHHHHHHHHHHh-
Confidence 45777899999999999999999999999997766 68899999999999999999999999997
Q ss_pred hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368 234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN 292 (372)
Q Consensus 234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~ 292 (372)
.+|++.++++.+|.++..+|+.++|...|++|+....+-. ......+.++...+
T Consensus 183 ---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~ 236 (694)
T PRK15179 183 ---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA--RKLTRRLVDLNADL 236 (694)
T ss_pred ---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch--HHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999876543 13344455544433
No 92
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.69 E-value=3.7e-07 Score=96.44 Aligned_cols=113 Identities=13% Similarity=0.080 Sum_probs=102.3
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS 235 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~ 235 (372)
..+...|..+...|++.+|+..|++++...|.. ..++.++|.++...+++.+|+..++++++
T Consensus 50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~la~~l~~~g~~~eA~~~l~~~l~--- 111 (765)
T PRK10049 50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQN---------------DDYQRGLILTLADAGQYDEALVKAKQLVS--- 111 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---
Confidence 347889999999999999999999999986654 46778999999999999999999999998
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368 236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG 291 (372)
Q Consensus 236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~ 291 (372)
.+|++.. ++.+|.++...|++++|+..|+++++++|++. .+...+..+...
T Consensus 112 -~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~---~~~~~la~~l~~ 162 (765)
T PRK10049 112 -GAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQ---QYPTEYVQALRN 162 (765)
T ss_pred -hCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Confidence 8999999 99999999999999999999999999999999 877777766543
No 93
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.69 E-value=3.5e-07 Score=97.07 Aligned_cols=121 Identities=12% Similarity=0.127 Sum_probs=98.8
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~ 233 (372)
.+..+...|..++..|+|.+|...|.+++...+.. ...+..+|.+++..|+|.+|+..++++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~- 187 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRS---------------LYAKLGLAQLALAENRFDEARALIDEVLT- 187 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------hhhHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 45677889999999999999999999999876543 35677888888888888888888888887
Q ss_pred hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368 234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ 296 (372)
Q Consensus 234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~ 296 (372)
.+|.+..+++.+|.++..+|++++|+..|++++.++|++. .+...+..+....+++.
T Consensus 188 ---~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~~~~~~~~~g~~~ 244 (899)
T TIGR02917 188 ---ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNP---AVLLALATILIEAGEFE 244 (899)
T ss_pred ---hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHH
Confidence 7888888888888888888888888888888888888887 76666666655554443
No 94
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.68 E-value=5e-07 Score=87.54 Aligned_cols=146 Identities=11% Similarity=0.034 Sum_probs=95.9
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccC-------------CChHHHHHHHH-----------HHHHHHHHHH
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQV-------------TNYEDQMQLEE-----------YLCRVYRNLM 211 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~-------------~~~~~~~~~~~-----------l~~~l~~Nla 211 (372)
..+...|..++..|+|..|+..|.+++...+.... ..++....... ....++.++|
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 34556677777777777777777776653211100 00000000000 1234667888
Q ss_pred HHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368 212 VCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG 291 (372)
Q Consensus 212 ~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~ 291 (372)
.++.+.+++++|+.+++++++ .+|++..+++.+|.+|...|++++|+..|.+++..+|.+. ..+...+..+...
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~~l~~~~~~ 261 (389)
T PRK11788 188 QQALARGDLDAARALLKKALA----ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL--SEVLPKLMECYQA 261 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHh----HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH--HHHHHHHHHHHHH
Confidence 888899999999999999987 7888888999999999999999999999999998888763 1455666666665
Q ss_pred HHHHHHHHHHHHHhhcc
Q psy8368 292 NQQYQKETKARCMKMFS 308 (372)
Q Consensus 292 ~~~~~~~~~~~~~~~~~ 308 (372)
.++..+. ...+.++..
T Consensus 262 ~g~~~~A-~~~l~~~~~ 277 (389)
T PRK11788 262 LGDEAEG-LEFLRRALE 277 (389)
T ss_pred cCCHHHH-HHHHHHHHH
Confidence 5555443 334555443
No 95
>PLN02789 farnesyltranstransferase
Probab=98.67 E-value=1.1e-06 Score=82.71 Aligned_cols=111 Identities=12% Similarity=0.031 Sum_probs=99.1
Q ss_pred HHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhhccCCCCchh
Q psy8368 165 AFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNK-QYKLTCDCASKALQFASHFATKDVK 243 (372)
Q Consensus 165 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~-~y~~Ai~~~~~aL~~~~~~~p~~~k 243 (372)
+...+++.+|+..+.++|.+.+.. ..++++++.++.+++ .+.+++..++++++ .+|+|..
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~---------------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~----~npknyq 107 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGN---------------YTVWHFRRLCLEALDADLEEELDFAEDVAE----DNPKNYQ 107 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchh---------------HHHHHHHHHHHHHcchhHHHHHHHHHHHHH----HCCcchH
Confidence 556789999999999999997765 689999999999999 68999999999998 9999999
Q ss_pred HHHHHHHHHHhcCCH--HHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHH
Q psy8368 244 LFFVWGKALIGLQEW--TSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQK 297 (372)
Q Consensus 244 a~~r~a~a~~~l~~~--e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~ 297 (372)
+|+.++.++..++.. ++++..+.++++++|+|. .++....-+...++.+.+
T Consensus 108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy---~AW~~R~w~l~~l~~~~e 160 (320)
T PLN02789 108 IWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNY---HAWSHRQWVLRTLGGWED 160 (320)
T ss_pred HhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhHHH
Confidence 999999999999874 788999999999999999 888888888777776654
No 96
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.66 E-value=8.8e-07 Score=85.80 Aligned_cols=129 Identities=8% Similarity=-0.029 Sum_probs=98.2
Q ss_pred HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368 157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH 236 (372)
Q Consensus 157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~ 236 (372)
.+...|..++..|++.+|+..|.+++...+.. ...+..+|.+|.+.|++++|+..+++++.
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~---- 242 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQC---------------VRASILLGDLALAQGDYAAAIEALERVEE---- 242 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----
Confidence 34567777778888888888888888765432 45778899999999999999999999997
Q ss_pred CCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy8368 237 FATKD-VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSS 309 (372)
Q Consensus 237 ~~p~~-~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 309 (372)
.+|.+ ..++..++.+|..+|++++|+..+++++++.|++. .+ ..+..+....++..+ ....+.+++..
T Consensus 243 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~---~~-~~la~~~~~~g~~~~-A~~~l~~~l~~ 311 (389)
T PRK11788 243 QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD---LL-LALAQLLEEQEGPEA-AQALLREQLRR 311 (389)
T ss_pred HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch---HH-HHHHHHHHHhCCHHH-HHHHHHHHHHh
Confidence 67775 45788999999999999999999999999999876 44 556666555554432 33444444433
No 97
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.66 E-value=3.8e-07 Score=100.58 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=108.4
Q ss_pred HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368 160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT 239 (372)
Q Consensus 160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p 239 (372)
..|..++..|++.+|+..|++++...+.. ..++.++|.+|+++|++++|+.+++++++ .+|
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~---------------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~----~~p 334 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKD---------------SEALGALGQAYSQQGDRARAVAQFEKALA----LDP 334 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCC
Confidence 45889999999999999999999986654 57899999999999999999999999998 778
Q ss_pred Cchh--------------HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8368 240 KDVK--------------LFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMK 305 (372)
Q Consensus 240 ~~~k--------------a~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 305 (372)
++.. .+..+|.++...|++++|+..|+++++++|++. .+...++.+....+++.++. ..|.+
T Consensus 335 ~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~---~a~~~Lg~~~~~~g~~~eA~-~~y~~ 410 (1157)
T PRK11447 335 HSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDS---YAVLGLGDVAMARKDYAAAE-RYYQQ 410 (1157)
T ss_pred CccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHH-HHHHH
Confidence 7643 224568899999999999999999999999999 89989999888877765443 45666
Q ss_pred hccCCCC
Q psy8368 306 MFSSSSS 312 (372)
Q Consensus 306 ~~~~~~~ 312 (372)
.+.....
T Consensus 411 aL~~~p~ 417 (1157)
T PRK11447 411 ALRMDPG 417 (1157)
T ss_pred HHHhCCC
Confidence 5544433
No 98
>KOG1840|consensus
Probab=98.66 E-value=6.8e-07 Score=88.37 Aligned_cols=146 Identities=16% Similarity=0.114 Sum_probs=117.3
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
..+..++..|..|...++|.+|+..|.+|+.+.......+. ...+.++.|+|..|.+.|+|.+|..+|++|++
T Consensus 239 ~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h-------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~ 311 (508)
T KOG1840|consen 239 VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH-------PAVAATLNNLAVLYYKQGKFAEAEEYCERALE 311 (508)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 44566677999999999999999999999999865433322 23478999999999999999999999999999
Q ss_pred hhcc----CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----CCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368 233 FASH----FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA-----AKDSVRAEIDKEILKADLGNQQYQKETKARC 303 (372)
Q Consensus 233 ~~~~----~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~-----p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 303 (372)
+... ..|.-...+...+..+..++++++|+..+++++++- ++|...+.+...|+.+...++++.+++ .++
T Consensus 312 I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~-~~~ 390 (508)
T KOG1840|consen 312 IYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE-ELY 390 (508)
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH-HHH
Confidence 8765 233455577889999999999999999999999864 345456688899999999988887654 344
Q ss_pred Hhh
Q psy8368 304 MKM 306 (372)
Q Consensus 304 ~~~ 306 (372)
+++
T Consensus 391 k~a 393 (508)
T KOG1840|consen 391 KKA 393 (508)
T ss_pred HHH
Confidence 444
No 99
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.64 E-value=4.9e-07 Score=67.21 Aligned_cols=93 Identities=16% Similarity=0.191 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q psy8368 206 VYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEI 285 (372)
Q Consensus 206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l 285 (372)
+++++|.++...|++.+|+..+.++++ ..|.+..+++.+|.++...+++++|+..|.+++.+.|.+. .+...+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 74 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALE----LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA---KAYYNL 74 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHh----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch---hHHHHH
Confidence 578899999999999999999999998 8898889999999999999999999999999999999998 888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy8368 286 LKADLGNQQYQKETKARCMKM 306 (372)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~ 306 (372)
..+....++.... ...+...
T Consensus 75 ~~~~~~~~~~~~a-~~~~~~~ 94 (100)
T cd00189 75 GLAYYKLGKYEEA-LEAYEKA 94 (100)
T ss_pred HHHHHHHHhHHHH-HHHHHHH
Confidence 8888777765443 3334443
No 100
>KOG1310|consensus
Probab=98.61 E-value=1.3e-07 Score=90.93 Aligned_cols=123 Identities=14% Similarity=0.150 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHc---cCHHHHH
Q psy8368 148 FAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNN---KQYKLTC 224 (372)
Q Consensus 148 ~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl---~~y~~Ai 224 (372)
|-++.+.++.++.+||..|..+....|+..|.++++..+.. ..+|.|+|.++++. ++...|+
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~---------------~~~l~nraa~lmkRkW~~d~~~Al 431 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA---------------IYLLENRAAALMKRKWRGDSYLAL 431 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch---------------hHHHHhHHHHHHhhhccccHHHHH
Confidence 55778999999999999999999999999999999987655 78999999999985 4788999
Q ss_pred HHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368 225 DCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN 292 (372)
Q Consensus 225 ~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~ 292 (372)
.+|..||+ ++|...||+|+++.|+..++++.+|+.+...+....|.+. +......-+.+.+
T Consensus 432 rDch~Alr----ln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~---a~~~~v~~l~rDi 492 (758)
T KOG1310|consen 432 RDCHVALR----LNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV---ARQNFVLCLPRDI 492 (758)
T ss_pred HhHHhhcc----CChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh---hhhhhhhccccch
Confidence 99999998 9999999999999999999999999999988888889776 4444444333333
No 101
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.61 E-value=4.7e-07 Score=86.90 Aligned_cols=98 Identities=17% Similarity=0.139 Sum_probs=85.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q psy8368 207 YRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEIL 286 (372)
Q Consensus 207 ~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~ 286 (372)
+...|..++..++|.+|+..|+++|+ ++|++..+|+.+|.+|..+|++++|+.++.+|+.++|++. .++..++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~----~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~---~a~~~lg 77 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAID----LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA---KAYLRKG 77 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH---HHHHHHH
Confidence 45678999999999999999999998 9999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368 287 KADLGNQQYQKETKARCMKMFSSSSS 312 (372)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (372)
.+...++++..+. ..|.+.+.....
T Consensus 78 ~~~~~lg~~~eA~-~~~~~al~l~P~ 102 (356)
T PLN03088 78 TACMKLEEYQTAK-AALEKGASLAPG 102 (356)
T ss_pred HHHHHhCCHHHHH-HHHHHHHHhCCC
Confidence 9988888876544 445555554444
No 102
>KOG2076|consensus
Probab=98.60 E-value=1.8e-06 Score=87.92 Aligned_cols=136 Identities=13% Similarity=0.052 Sum_probs=99.7
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
..+..+...||.+|..|+++.|...+..+|+..+.. ...|.-+|.||-.+|+..+|+.....|-.
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~---------------~~ay~tL~~IyEqrGd~eK~l~~~llAAH 201 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRN---------------PIAYYTLGEIYEQRGDIEKALNFWLLAAH 201 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc---------------hhhHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 347889999999999999999999999999998766 45666777777777777777777766664
Q ss_pred hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy8368 233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSS 311 (372)
Q Consensus 233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (372)
++|.+..-|.+++.....+|+++.|+-+|.+|++.+|.|- ...-.-..+.++.+..+ .+...|.++|...+
T Consensus 202 ----L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~---~~~~ers~L~~~~G~~~-~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 202 ----LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW---ELIYERSSLYQKTGDLK-RAMETFLQLLQLDP 272 (895)
T ss_pred ----cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch---HHHHHHHHHHHHhChHH-HHHHHHHHHHhhCC
Confidence 7777777777777777777777777777777777777776 66666666666665553 33445555555555
No 103
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.57 E-value=1e-06 Score=69.98 Aligned_cols=101 Identities=13% Similarity=0.061 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHH
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD---VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEI 281 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~---~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~ 281 (372)
..++++|..+.+.|+|.+|+..|.++++ .+|++ ..+++.+|.++...|++++|+..|++++..+|++.....+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLK----KYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH
Confidence 4678999999999999999999999997 66765 6799999999999999999999999999999987422267
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy8368 282 DKEILKADLGNQQYQKETKARCMKMFSSS 310 (372)
Q Consensus 282 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (372)
+..++.+....++..+ ....+..++...
T Consensus 79 ~~~~~~~~~~~~~~~~-A~~~~~~~~~~~ 106 (119)
T TIGR02795 79 LLKLGMSLQELGDKEK-AKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHhCChHH-HHHHHHHHHHHC
Confidence 7777777766555433 334455554443
No 104
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.56 E-value=2.6e-07 Score=88.71 Aligned_cols=64 Identities=16% Similarity=0.017 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhH---HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKL---FFVWGKALIGLQEWTSAIKHLKTARKL 271 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka---~~r~a~a~~~l~~~e~A~~~~~~al~l 271 (372)
...++|+|.+|+++|+|++|+..|++||+ ++|++..+ ||++|.||..+|++++|+.+|++|+++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe----L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE----LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67899999999999999999999999998 99999865 999999999999999999999999998
No 105
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.55 E-value=4.5e-07 Score=66.89 Aligned_cols=73 Identities=16% Similarity=0.118 Sum_probs=60.6
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
..+..+.+.|..++..|+|++|+..|++|+.+...... .....+.+++|+|.||..+|++++|+.+++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35788999999999999999999999999999543321 1123378999999999999999999999999997
Q ss_pred h
Q psy8368 233 F 233 (372)
Q Consensus 233 ~ 233 (372)
+
T Consensus 75 i 75 (78)
T PF13424_consen 75 I 75 (78)
T ss_dssp H
T ss_pred h
Confidence 3
No 106
>KOG2003|consensus
Probab=98.55 E-value=2.9e-07 Score=87.10 Aligned_cols=121 Identities=16% Similarity=0.143 Sum_probs=104.8
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS 235 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~ 235 (372)
..+-+.||..|..|++++|...|+.||.-.... ...++|+|+.+-++|+.++|+.++-+.-.
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc---------------~ealfniglt~e~~~~ldeald~f~klh~--- 552 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASC---------------TEALFNIGLTAEALGNLDEALDCFLKLHA--- 552 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHH---------------HHHHHHhcccHHHhcCHHHHHHHHHHHHH---
Confidence 456688999999999999999999999754333 67889999999999999999999988764
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368 236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKE 298 (372)
Q Consensus 236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~ 298 (372)
+--+|+..++.+|.+|..+.+...|++.|.++..+-|+++ .+...|+.+..+-++..++
T Consensus 553 -il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp---~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 553 -ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDP---AILSKLADLYDQEGDKSQA 611 (840)
T ss_pred -HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCH---HHHHHHHHHhhcccchhhh
Confidence 3357899999999999999999999999999999999999 9999999988766554443
No 107
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.54 E-value=2.5e-07 Score=65.68 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=57.0
Q ss_pred HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368 160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT 239 (372)
Q Consensus 160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p 239 (372)
..|..++..|+|++|+..|++++...+.. ..++..+|.|+..+|+|++|+..++++++ .+|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~----~~P 62 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDN---------------PEAWYLLGRILYQQGRYDEALAYYERALE----LDP 62 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTH---------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHH----HST
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCc
Confidence 57899999999999999999999987654 68999999999999999999999999998 888
Q ss_pred Cch
Q psy8368 240 KDV 242 (372)
Q Consensus 240 ~~~ 242 (372)
+++
T Consensus 63 ~~p 65 (65)
T PF13432_consen 63 DNP 65 (65)
T ss_dssp T-H
T ss_pred CCC
Confidence 874
No 108
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.53 E-value=1.3e-06 Score=74.68 Aligned_cols=83 Identities=10% Similarity=-0.024 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHH
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK---DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAE 280 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~---~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~ 280 (372)
..+++++|.++..+++|++|+..+++++. +.|+ .+-+++++|.+|..+|++++|+..|++|+.++|.+. .
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~----l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~---~ 107 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMR----LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP---Q 107 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH---H
Confidence 68899999999999999999999999997 5444 345899999999999999999999999999999998 8
Q ss_pred HHHHHHHHHHHHH
Q psy8368 281 IDKEILKADLGNQ 293 (372)
Q Consensus 281 ~~~~l~~~~~~~~ 293 (372)
.+..+..+...+.
T Consensus 108 ~~~~la~i~~~~~ 120 (168)
T CHL00033 108 ALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777776443
No 109
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.50 E-value=1.9e-06 Score=91.08 Aligned_cols=102 Identities=13% Similarity=0.035 Sum_probs=95.4
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS 235 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~ 235 (372)
..+...|..+...|++++|+..+.+++...|.. ..++.++|.++...|++++|+..+++++.
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n---------------~~l~~~lA~l~~~~g~~~~A~~~l~~al~--- 421 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN---------------QGLRIDYASVLQARGWPRAAENELKKAEV--- 421 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---
Confidence 345678889999999999999999999987665 57899999999999999999999999998
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
++|++..+++.+|.+++.++++++|...++++++..|+++
T Consensus 422 -l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 422 -LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred -hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999999999999999999
No 110
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.49 E-value=1.7e-06 Score=72.11 Aligned_cols=98 Identities=12% Similarity=-0.009 Sum_probs=71.0
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA 234 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~ 234 (372)
.......|..++..|+|++|+..|.+++...+.. .+...+.+++|.+++.+|+|++|+..++.+-
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~------------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~--- 112 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDP------------ELKPLARLRLARILLQQGQYDEALATLQQIP--- 112 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---
Confidence 4556667888888888888888888888753111 1234567778888888888888888886532
Q ss_pred ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8368 235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTAR 269 (372)
Q Consensus 235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al 269 (372)
-.+-.+.++..+|.+|...|++++|+..|++|+
T Consensus 113 --~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 113 --DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred --CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 334456677788888888888888888888774
No 111
>KOG1129|consensus
Probab=98.47 E-value=4.3e-07 Score=82.88 Aligned_cols=146 Identities=14% Similarity=0.105 Sum_probs=110.9
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc------------CCChH-HHHHHHHHH------HHHHHHHHHHHH
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ------------VTNYE-DQMQLEEYL------CRVYRNLMVCYN 215 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~------------~~~~~-~~~~~~~l~------~~l~~Nla~~~~ 215 (372)
++-+...+.++-..+++++|++.|+.+++.-+..- ....+ ...-.++++ ..+++|+|.|++
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ 369 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL 369 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence 44556788888889999999999999998754321 11111 111222222 469999999999
Q ss_pred HccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy8368 216 NNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQY 295 (372)
Q Consensus 216 kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~ 295 (372)
--++|+-++..+.+|+..++ .+..-+..||++|.+....|++.-|..+|+-||.-||++. ++...|+-+..+.++.
T Consensus 370 yaqQ~D~~L~sf~RAlstat-~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~---ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 370 YAQQIDLVLPSFQRALSTAT-QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG---EALNNLAVLAARSGDI 445 (478)
T ss_pred hhcchhhhHHHHHHHHhhcc-CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH---HHHHhHHHHHhhcCch
Confidence 99999999999999997441 2233677899999999999999999999999999999999 9999999888776554
Q ss_pred HHHHHHHHHh
Q psy8368 296 QKETKARCMK 305 (372)
Q Consensus 296 ~~~~~~~~~~ 305 (372)
. ..+..++.
T Consensus 446 ~-~Arsll~~ 454 (478)
T KOG1129|consen 446 L-GARSLLNA 454 (478)
T ss_pred H-HHHHHHHH
Confidence 3 33444443
No 112
>KOG1125|consensus
Probab=98.45 E-value=3.8e-06 Score=81.94 Aligned_cols=95 Identities=21% Similarity=0.215 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHH
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKE 284 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~ 284 (372)
.++.-||..|.-.++|++|+.+++.||. .+|++...|-|+|..+..-.+.++|+..|++|++|.|+.. -++..
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~----v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV---R~RyN 503 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQ----VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYV---RVRYN 503 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHh----cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCee---eeehh
Confidence 4677789999999999999999999998 9999999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy8368 285 ILKADLGNQQYQKETKARCMKM 306 (372)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~ 306 (372)
|+-.-.-++.|+++.+.....+
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999999998887776654
No 113
>KOG4162|consensus
Probab=98.45 E-value=1.6e-06 Score=86.90 Aligned_cols=104 Identities=14% Similarity=0.083 Sum_probs=87.1
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH--HHHHHH
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCD--CASKAL 231 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~--~~~~aL 231 (372)
.+..++..|..+..+|++.+|...|..|+.+.|.. +.+...+|.|+++.|+-.-|.. ....++
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h---------------v~s~~Ala~~lle~G~~~la~~~~~L~dal 747 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH---------------VPSMTALAELLLELGSPRLAEKRSLLSDAL 747 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC---------------cHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 35667788888888888888988888888886665 5677788888888888777777 888888
Q ss_pred HhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 232 QFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 232 ~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
+ +||.|.+|||.+|.++..+|+.++|.++|.-|+++++.++
T Consensus 748 r----~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 748 R----LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred h----hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 7 8899999999999999999999999999999999888887
No 114
>KOG2002|consensus
Probab=98.45 E-value=3.9e-06 Score=86.18 Aligned_cols=118 Identities=11% Similarity=0.035 Sum_probs=102.2
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS 235 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~ 235 (372)
..+...+|-+|-.|+|..+...+.-|+.... ...+.+..++++|.||..+|+|++|..+|.++++
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~------------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--- 335 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTE------------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--- 335 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---
Confidence 3455678888888888888888888887642 2234466799999999999999999999999998
Q ss_pred cCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368 236 HFATKD-VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN 292 (372)
Q Consensus 236 ~~~p~~-~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~ 292 (372)
.+|++ .-+++.+|+.|+..|+++.|..+|.++++..|++. +....|+.+....
T Consensus 336 -~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~---etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 336 -ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNY---ETMKILGCLYAHS 389 (1018)
T ss_pred -cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchH---HHHHHHHhHHHhh
Confidence 88887 88999999999999999999999999999999999 9998888887665
No 115
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.43 E-value=2.5e-06 Score=73.16 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHH
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK---DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAE 280 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~---~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~ 280 (372)
..+++++|.++...|+|++|+.+|+++++ ..|+ ...+++.+|.+|..+|++++|+..|.+++.++|++. .
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~ 107 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALK----LEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP---S 107 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---H
Confidence 67899999999999999999999999997 5444 357999999999999999999999999999999998 8
Q ss_pred HHHHHHHHHHHHHH
Q psy8368 281 IDKEILKADLGNQQ 294 (372)
Q Consensus 281 ~~~~l~~~~~~~~~ 294 (372)
....++.+...++.
T Consensus 108 ~~~~lg~~~~~~g~ 121 (172)
T PRK02603 108 ALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHcCC
Confidence 87777777665543
No 116
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.42 E-value=7.9e-07 Score=63.62 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=57.7
Q ss_pred HHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhH
Q psy8368 165 AFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKL 244 (372)
Q Consensus 165 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka 244 (372)
+++.|+|.+|+..|++++...|.. ..++.++|.||++.|++++|...+.+++. .+|+++..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~l~~~~~----~~~~~~~~ 61 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN---------------PEARLLLAQCYLKQGQYDEAEELLERLLK----QDPDNPEY 61 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS---------------HHHHHHHHHHHHHTT-HHHHHHHHHCCHG----GGTTHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCHHHH
Confidence 467899999999999999998776 68888999999999999999999999997 88888766
Q ss_pred HHHHHH
Q psy8368 245 FFVWGK 250 (372)
Q Consensus 245 ~~r~a~ 250 (372)
+.-+++
T Consensus 62 ~~l~a~ 67 (68)
T PF14559_consen 62 QQLLAQ 67 (68)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 655554
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.40 E-value=7.1e-06 Score=73.02 Aligned_cols=97 Identities=16% Similarity=0.128 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHH
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKE 284 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~ 284 (372)
.++.-.+..++..|+|..|+..+.++.. +.|+++++|.-+|.+|..+|++++|...|.+++++.|+++ .+...
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~----l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p---~~~nN 173 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAAR----LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP---SIANN 173 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhc----cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc---hhhhh
Confidence 3455588899999999999999999997 9999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q psy8368 285 ILKADLGNQQYQKETKARCMKMFS 308 (372)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
+.-..-..++.+.+++-.......
T Consensus 174 lgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 174 LGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Confidence 998888777777666555544433
No 118
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.39 E-value=6e-06 Score=69.72 Aligned_cols=100 Identities=13% Similarity=0.023 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhhccCCCC
Q psy8368 171 IVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNN----------KQYKLTCDCASKALQFASHFATK 240 (372)
Q Consensus 171 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl----------~~y~~Ai~~~~~aL~~~~~~~p~ 240 (372)
|+.|.+.|.......|.. ...++|-|.+++.| ..+++|+.-+++||. ++|+
T Consensus 7 FE~ark~aea~y~~nP~D---------------adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~----I~P~ 67 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLD---------------ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK----INPN 67 (186)
T ss_dssp HHHHHHHHHHHHHH-TT----------------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH----H-TT
T ss_pred HHHHHHHHHHHHHhCcHh---------------HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh----cCCc
Confidence 566777777766664433 56677777777665 347888999999997 9999
Q ss_pred chhHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368 241 DVKLFFVWGKALIGLQE-----------WTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN 292 (372)
Q Consensus 241 ~~ka~~r~a~a~~~l~~-----------~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~ 292 (372)
...|++.+|.||..++. |+.|..+|++|...+|+|. ..++.|....+.-
T Consensus 68 ~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne---~Y~ksLe~~~kap 127 (186)
T PF06552_consen 68 KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE---LYRKSLEMAAKAP 127 (186)
T ss_dssp -HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H---HHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHhhH
Confidence 99999999999998764 7899999999999999999 8888887775433
No 119
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=4.4e-06 Score=72.35 Aligned_cols=106 Identities=15% Similarity=0.060 Sum_probs=98.8
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
+++.-++++|+.|=..|-...|--.|.+++.+.|.- ..+++-+|..+...|+|+.|.+.++-+++
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m---------------~~vfNyLG~Yl~~a~~fdaa~eaFds~~E 127 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM---------------PEVFNYLGIYLTQAGNFDAAYEAFDSVLE 127 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc---------------HHHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence 458888999999999999999999999999987765 68899999999999999999999999998
Q ss_pred hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCcc
Q psy8368 233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSV 277 (372)
Q Consensus 233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~ 277 (372)
+||.+--|+.+||.+++--|+|.-|.+++.+-.+-||+|+.
T Consensus 128 ----LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 128 ----LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred ----cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 99999999999999999999999999999999999999983
No 120
>KOG1840|consensus
Probab=98.37 E-value=9.8e-06 Score=80.27 Aligned_cols=110 Identities=11% Similarity=0.038 Sum_probs=90.2
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS 235 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~ 235 (372)
......|..|+.+|+|+.|+..+++|++.+...... .+........++|..|..+++|.+|+..|.+||.+.+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~-------~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL-------KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc-------cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 334449999999999999999999999996443221 1122345666799999999999999999999998765
Q ss_pred ----cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368 236 ----HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA 272 (372)
Q Consensus 236 ----~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~ 272 (372)
..+|.-+-++.++|.+|...|+|.+|..++++|+++-
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 3456677789999999999999999999999999874
No 121
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.37 E-value=7.3e-06 Score=86.28 Aligned_cols=152 Identities=9% Similarity=-0.044 Sum_probs=105.6
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCC-------------ChHHHHHHHHHH------HHHHHHHHHHH
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVT-------------NYEDQMQLEEYL------CRVYRNLMVCY 214 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~~~~~~~~~l~------~~l~~Nla~~~ 214 (372)
.+......+-..+++|+|..|+..|.++++..+..+.. .+.....++... ...+..+|.+|
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 45677889999999999999999999999887765211 000111111111 22333446688
Q ss_pred HHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy8368 215 NNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQ 294 (372)
Q Consensus 215 ~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~ 294 (372)
..+|+|++|+..++++++ .+|+|+.+++-++.+|...++.++|+..++++...+|.+. .. ..+..+......
T Consensus 113 ~~~gdyd~Aiely~kaL~----~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~---~~-l~layL~~~~~~ 184 (822)
T PRK14574 113 RNEKRWDQALALWQSSLK----KDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ---NY-MTLSYLNRATDR 184 (822)
T ss_pred HHcCCHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH---HH-HHHHHHHHhcch
Confidence 888888888888888887 8888888888888888888888888888888888888876 44 344444433333
Q ss_pred HHHHHHHHHHhhccCCCCCC
Q psy8368 295 YQKETKARCMKMFSSSSSPS 314 (372)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~ 314 (372)
..+ +-..|++++...+...
T Consensus 185 ~~~-AL~~~ekll~~~P~n~ 203 (822)
T PRK14574 185 NYD-ALQASSEAVRLAPTSE 203 (822)
T ss_pred HHH-HHHHHHHHHHhCCCCH
Confidence 323 6677777777666543
No 122
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.34 E-value=1.2e-05 Score=72.35 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=93.3
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS 235 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~ 235 (372)
+...+.+-.+++.|+|..|...|..-++-+|..... ...++=||.|++.+|+|.+|...+..+.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~------------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k--- 206 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT------------PNAYYWLGESLYAQGDYEDAAYIFARVVK--- 206 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc------------chhHHHHHHHHHhcccchHHHHHHHHHHH---
Confidence 448889999999999999999999999988776433 35778899999999999999999999998
Q ss_pred cCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 236 HFATK---DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 236 ~~~p~---~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
-.|+ -+.++|.+|.+...+|+.++|...|+++.+--|+..
T Consensus 207 -~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 207 -DYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred -hCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 4455 455799999999999999999999999999999998
No 123
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.6e-05 Score=72.40 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=91.3
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHc---cCHHHHHHHHHHH
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNN---KQYKLTCDCASKA 230 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl---~~y~~Ai~~~~~a 230 (372)
.++.+--.|..|+..|++..|...|.+|+++.+.. ..++.-+|.+++-. ..-.++...++++
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n---------------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN---------------PEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 35677789999999999999999999999998766 45666667665543 3478899999999
Q ss_pred HHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 231 LQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 231 L~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
|+ .||+|+.+++-+|..++..|+|.+|...++..+.+.|.+.
T Consensus 220 l~----~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 220 LA----LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred Hh----cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 98 9999999999999999999999999999999999999876
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=2.1e-05 Score=75.65 Aligned_cols=130 Identities=12% Similarity=-0.042 Sum_probs=103.9
Q ss_pred HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368 160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT 239 (372)
Q Consensus 160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p 239 (372)
-.+..++..|+++.|...+...+...|.+ ..+..-++..+++.++.++|++.+++++. ++|
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~P~N---------------~~~~~~~~~i~~~~nk~~~A~e~~~kal~----l~P 371 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQPDN---------------PYYLELAGDILLEANKAKEAIERLKKALA----LDP 371 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCC
Confidence 34445555555555555555544444433 45666788999999999999999999997 999
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy8368 240 KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSS 311 (372)
Q Consensus 240 ~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (372)
+..-..+++|.+|++.|++.+|+..++..+.-+|+|+ ..+..|+.....+++..+.....-..+|-...
T Consensus 372 ~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp---~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 372 NSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP---NGWDLLAQAYAELGNRAEALLARAEGYALAGR 440 (484)
T ss_pred CccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999 99999999999998887766655555554333
No 125
>KOG2002|consensus
Probab=98.30 E-value=8.6e-06 Score=83.72 Aligned_cols=131 Identities=12% Similarity=0.101 Sum_probs=111.1
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA 234 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~ 234 (372)
.+.+.+.|-.+|..|.|..|...+..|+..+......++. +...+++.+|+|.|+-.++++..|-..|..+++
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~-----~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk-- 524 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG-----KSTNLTLKYNLARLLEELHDTEVAEEMYKSILK-- 524 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc-----ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--
Confidence 4677899999999999999999999999885322111110 223367899999999999999999999999998
Q ss_pred ccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHH
Q psy8368 235 SHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQK 297 (372)
Q Consensus 235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~ 297 (372)
..|..+.+|.|+|......++..+|...++.++.++..|+ .++..++.+.........
T Consensus 525 --ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np---~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 525 --EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNP---NARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred --HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCc---HHHHHHHHHHHhhhhhcc
Confidence 9999999999999777888999999999999999999999 999999988776665543
No 126
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.30 E-value=4.5e-06 Score=60.55 Aligned_cols=70 Identities=11% Similarity=0.123 Sum_probs=62.1
Q ss_pred hHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc
Q psy8368 162 GKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD 241 (372)
Q Consensus 162 Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~ 241 (372)
.+.++..++|..|+..+.+++...|.. ..++.++|.||.++|+|.+|+.+++++++ ..|++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~----~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD---------------PELWLQRARCLFQLGRYEEALEDLERALE----LSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc---------------chhhHHHHHHHHHhccHHHHHHHHHHHHH----HCCCc
Confidence 467899999999999999999997765 68899999999999999999999999998 89988
Q ss_pred hhHHHHHHH
Q psy8368 242 VKLFFVWGK 250 (372)
Q Consensus 242 ~ka~~r~a~ 250 (372)
..+..-++.
T Consensus 63 ~~~~~~~a~ 71 (73)
T PF13371_consen 63 PDARALRAM 71 (73)
T ss_pred HHHHHHHHh
Confidence 877665543
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.29 E-value=1.2e-05 Score=77.36 Aligned_cols=111 Identities=14% Similarity=0.069 Sum_probs=98.0
Q ss_pred HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368 160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT 239 (372)
Q Consensus 160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p 239 (372)
..+..++..++..+|.+.+++++...|.. ..+..|+|.+|++.|++.+|+...+..+. .+|
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~l~P~~---------------~~l~~~~a~all~~g~~~eai~~L~~~~~----~~p 405 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALALDPNS---------------PLLQLNLAQALLKGGKPQEAIRILNRYLF----NDP 405 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCc---------------cHHHHHHHHHHHhcCChHHHHHHHHHHhh----cCC
Confidence 46778889999999999999999998775 57889999999999999999999999997 999
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368 240 KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN 292 (372)
Q Consensus 240 ~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~ 292 (372)
+++..|..+|++|..+|+-.+|...+...+.+..+-. .+...+..++++.
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~---~A~~~l~~A~~~~ 455 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLE---QAIIFLMRASQQV 455 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHH---HHHHHHHHHHHhc
Confidence 9999999999999999999999999998888888776 6666666655544
No 128
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.27 E-value=2.1e-05 Score=63.09 Aligned_cols=98 Identities=18% Similarity=0.049 Sum_probs=81.3
Q ss_pred HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368 157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH 236 (372)
Q Consensus 157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~ 236 (372)
..++.|..+-..|+..+|+..|++|+..-... ..+..++.++|.+|..+|++++|+..+++++.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~------------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~---- 66 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSG------------ADRRRALIQLASTLRNLGRYDEALALLEEALE---- 66 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Confidence 46778888999999999999999999852111 12245788999999999999999999999997
Q ss_pred CCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368 237 FATK---DVKLFFVWGKALIGLQEWTSAIKHLKTARK 270 (372)
Q Consensus 237 ~~p~---~~ka~~r~a~a~~~l~~~e~A~~~~~~al~ 270 (372)
..|+ +.....-++.++..+|++++|+..+..++.
T Consensus 67 ~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 67 EFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5466 777788899999999999999999988774
No 129
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.26 E-value=1.3e-05 Score=73.41 Aligned_cols=104 Identities=8% Similarity=-0.049 Sum_probs=84.7
Q ss_pred HHHHHHHHHH-HHccCHHHHHHHHHHHHHhhccCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHH
Q psy8368 205 RVYRNLMVCY-NNNKQYKLTCDCASKALQFASHFATKD---VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAE 280 (372)
Q Consensus 205 ~l~~Nla~~~-~kl~~y~~Ai~~~~~aL~~~~~~~p~~---~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~ 280 (372)
...++.|.++ ++.++|++|+..|+..++ ..|++ +.++|++|.+|+.+|+|++|+..|.++++..|+++...+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~----~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVK----KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 4567788876 678999999999999998 77886 579999999999999999999999999999999876667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy8368 281 IDKEILKADLGNQQYQKETKARCMKMFSSSSSP 313 (372)
Q Consensus 281 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (372)
+...++.+....++. ...+..|.++....+..
T Consensus 219 Al~klg~~~~~~g~~-~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 219 AMFKVGVIMQDKGDT-AKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHHCcCC
Confidence 887788887766544 45566677666555543
No 130
>KOG2076|consensus
Probab=98.23 E-value=1.6e-05 Score=81.11 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=90.4
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
....-+++.+..+...|+|..|+..|...+....... ..++.++|.||..+|.|++|+.+|.++|.
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~--------------~~vw~~~a~c~~~l~e~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN--------------AFVWYKLARCYMELGEYEEAIEFYEKVLI 477 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc--------------hhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4567888999999999999999999988886643321 57899999999999999999999999998
Q ss_pred hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368 233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA 272 (372)
Q Consensus 233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~ 272 (372)
.+|++..+...++..|..+|+.++|++.+....--|
T Consensus 478 ----~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 478 ----LAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred ----cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 999999999999999999999999999999876334
No 131
>KOG1130|consensus
Probab=98.23 E-value=1.7e-06 Score=81.28 Aligned_cols=116 Identities=15% Similarity=0.143 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy8368 150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASK 229 (372)
Q Consensus 150 ~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~ 229 (372)
.+..+..++-+.||.||-.|+|+.|+...+.-|.+...... +.....++.|+|+||+-+|+++.|+++|..
T Consensus 190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---------RAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---------HHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 45567778889999999999999999999998887644321 112246899999999999999999999999
Q ss_pred HHHhhccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q psy8368 230 ALQFASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK 274 (372)
Q Consensus 230 aL~~~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~ 274 (372)
++.++-.+... .+...|-+|.+|.-+.+|+.|+.++++-|.+...
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe 307 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE 307 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98766555555 4456899999999999999999999999888654
No 132
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.22 E-value=2e-05 Score=73.21 Aligned_cols=115 Identities=11% Similarity=0.044 Sum_probs=89.0
Q ss_pred HHHHHHHHhhHHHHhc-cCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFND-KNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKAL 231 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL 231 (372)
..+..+.+.|..+... |+++.|+..|.+|+.++.... .......++.++|.++.++++|++|+..++++.
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~---------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG---------SPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4577888999999998 999999999999999986542 122336789999999999999999999999998
Q ss_pred HhhccC--CCCchh-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 232 QFASHF--ATKDVK-LFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 232 ~~~~~~--~p~~~k-a~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
...... ..-+++ .+++.+.|++..|++..|...|++....+|...
T Consensus 183 ~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 183 KKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 622100 011444 457889999999999999999999999999765
No 133
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.21 E-value=2.2e-06 Score=52.38 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q psy8368 242 VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD 275 (372)
Q Consensus 242 ~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~ 275 (372)
+++|+++|.+|..+|++++|+.+|++|++++|+|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578888888888888888888888888888864
No 134
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.21 E-value=0.00019 Score=56.32 Aligned_cols=111 Identities=15% Similarity=0.172 Sum_probs=83.4
Q ss_pred HHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc--
Q psy8368 158 LGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS-- 235 (372)
Q Consensus 158 ~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~-- 235 (372)
-...|...+..|-|.+|...|++|+.+....|.... -.-.-.-.-||.-++.++..||+|++++...+.+|.++.
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEa---FDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEA---FDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhh---cccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 345677788899999999999999998766543221 112223367899999999999999999999999997653
Q ss_pred -cCCCC----chhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy8368 236 -HFATK----DVKLFFVWGKALIGLQEWTSAIKHLKTARKL 271 (372)
Q Consensus 236 -~~~p~----~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l 271 (372)
.++.+ .+.+.|++|.++..+|+.++|+..|+.+-+.
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 24444 4568899999999999999999999988654
No 135
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.20 E-value=1.1e-05 Score=74.65 Aligned_cols=132 Identities=17% Similarity=0.101 Sum_probs=95.6
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS 235 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~ 235 (372)
..+......+...+++..+...+.++..... .+.+ ..++.-+|.++.+.|++++|+.+++++|+
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~---~~~~----------~~~~~~~a~~~~~~G~~~~A~~~~~~al~--- 174 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELPA---APDS----------ARFWLALAEIYEQLGDPDKALRDYRKALE--- 174 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T------T-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHH---
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhccC---CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Confidence 3444555667788899998888888764321 1111 56788999999999999999999999998
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8368 236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFS 308 (372)
Q Consensus 236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
.+|++..+...++.++...|+++++...+....+..|+|+ .++..++.+...++++.+ ....+.+...
T Consensus 175 -~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~---~~~~~la~~~~~lg~~~~-Al~~~~~~~~ 242 (280)
T PF13429_consen 175 -LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP---DLWDALAAAYLQLGRYEE-ALEYLEKALK 242 (280)
T ss_dssp -H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC---CHCHHHHHHHHHHT-HHH-HHHHHHHHHH
T ss_pred -cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH---HHHHHHHHHhcccccccc-cccccccccc
Confidence 9999999999999999999999999999999999889998 888888888888777653 3444555444
No 136
>KOG1174|consensus
Probab=98.18 E-value=1.1e-05 Score=76.02 Aligned_cols=148 Identities=14% Similarity=0.084 Sum_probs=99.6
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~ 233 (372)
....+.-+|+.+...++.++|+..|+.|+.+.|.. ..+|-.+-.||+..+++.+|....+.+++.
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r---------------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~ 397 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR---------------LEIYRGLFHSYLAQKRFKEANALANWTIRL 397 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhcchhh---------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 34567788999999999999999999998886543 455555556666655555555444444431
Q ss_pred hc--------------------------------cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHH
Q psy8368 234 AS--------------------------------HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEI 281 (372)
Q Consensus 234 ~~--------------------------------~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~ 281 (372)
+. .+.|...+|-..+|..+..-|.+++++..++++|...|+.. .
T Consensus 398 ~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~----L 473 (564)
T KOG1174|consen 398 FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN----L 473 (564)
T ss_pred hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH----H
Confidence 10 15677778888888888888888888888888888888765 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcchHHHh
Q psy8368 282 DKEILKADLGNQQYQKETKARCMKMFSSSSSPSQHSNVVR 321 (372)
Q Consensus 282 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (372)
+..|+.+......+. .....|+..++..++......-.+
T Consensus 474 H~~Lgd~~~A~Ne~Q-~am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 474 HNHLGDIMRAQNEPQ-KAMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHHHHHHhhhHH-HHHHHHHHHHhcCccchHHHHHHH
Confidence 667777666655553 344566666666665533333333
No 137
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.17 E-value=4.2e-06 Score=62.71 Aligned_cols=76 Identities=16% Similarity=0.262 Sum_probs=65.6
Q ss_pred ccCHHHHHHHHHHHHHhhccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy8368 217 NKQYKLTCDCASKALQFASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQ 294 (372)
Q Consensus 217 l~~y~~Ai~~~~~aL~~~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~ 294 (372)
.++|+.|+..+++++. .+|. +...++.+|.||+.+|+|++|+..+++ ++.+|.+. .++..++++.-.+++
T Consensus 2 ~~~y~~Ai~~~~k~~~----~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~---~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE----LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP---DIHYLLARCLLKLGK 73 (84)
T ss_dssp TT-HHHHHHHHHHHHH----HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH---HHHHHHHHHHHHTT-
T ss_pred CccHHHHHHHHHHHHH----HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH---HHHHHHHHHHHHhCC
Confidence 5899999999999998 6664 566788899999999999999999999 99999998 889999999999988
Q ss_pred HHHHHH
Q psy8368 295 YQKETK 300 (372)
Q Consensus 295 ~~~~~~ 300 (372)
+.++..
T Consensus 74 y~eAi~ 79 (84)
T PF12895_consen 74 YEEAIK 79 (84)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876554
No 138
>KOG1128|consensus
Probab=98.17 E-value=8e-06 Score=81.68 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=92.3
Q ss_pred HHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccC
Q psy8368 158 LGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHF 237 (372)
Q Consensus 158 ~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~ 237 (372)
....|+-.+..++|.+|..+++.++.+.+-. ...++++|.|.+++++++.|..+|.+++. +
T Consensus 488 ~r~~~~~~~~~~~fs~~~~hle~sl~~nplq---------------~~~wf~~G~~ALqlek~q~av~aF~rcvt----L 548 (777)
T KOG1128|consen 488 QRSLALLILSNKDFSEADKHLERSLEINPLQ---------------LGTWFGLGCAALQLEKEQAAVKAFHRCVT----L 548 (777)
T ss_pred HHhhccccccchhHHHHHHHHHHHhhcCccc---------------hhHHHhccHHHHHHhhhHHHHHHHHHHhh----c
Confidence 3445555667788888888888888775433 67899999999999999999999999997 9
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368 238 ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ 293 (372)
Q Consensus 238 ~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~ 293 (372)
+|+|..+|.+++.+|+.++.-.+|...+..|++.+-++- .++.+...+....+
T Consensus 549 ~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w---~iWENymlvsvdvg 601 (777)
T KOG1128|consen 549 EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW---QIWENYMLVSVDVG 601 (777)
T ss_pred CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC---eeeechhhhhhhcc
Confidence 999999999999999999999999999999999987765 44444444433333
No 139
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.16 E-value=3.5e-05 Score=74.33 Aligned_cols=68 Identities=24% Similarity=0.360 Sum_probs=59.6
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
..+..+.+.|+.|++.|+|++|+..|++||.+.+... . ...+|+|+|.||.++|++++|+.++++|++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a-----e-------A~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD-----E-------AQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-----H-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999976541 0 014699999999999999999999999997
No 140
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.16 E-value=3.5e-05 Score=71.65 Aligned_cols=147 Identities=13% Similarity=0.090 Sum_probs=105.4
Q ss_pred HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368 152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKAL 231 (372)
Q Consensus 152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL 231 (372)
-+.+..+...||.|-..|+|.+|...|.+|.......... ......|.+.+.||.+. ++.+|+.++++|+
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~---------~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~ 101 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK---------FEAAKAYEEAANCYKKG-DPDEAIECYEKAI 101 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H---------HHHHHHHHHHHHHHHHT-THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH
Confidence 3567888888999999999999999999999887543211 11256788888898777 9999999999999
Q ss_pred HhhccCC-CC-chhHHHHHHHHHHhc-CCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8368 232 QFASHFA-TK-DVKLFFVWGKALIGL-QEWTSAIKHLKTARKLAAKDS---VRAEIDKEILKADLGNQQYQKETKARCMK 305 (372)
Q Consensus 232 ~~~~~~~-p~-~~ka~~r~a~a~~~l-~~~e~A~~~~~~al~l~p~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 305 (372)
+++...+ +. -.+++.++|.+|... ++++.|++.|++|+.+-..+. ....+...++.+..+.+++.++ ...|.+
T Consensus 102 ~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A-~~~~e~ 180 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA-IEIYEE 180 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH-HHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH-HHHHHH
Confidence 8764333 22 466888999999998 999999999999998743221 3345667777777777777554 445555
Q ss_pred hccC
Q psy8368 306 MFSS 309 (372)
Q Consensus 306 ~~~~ 309 (372)
+...
T Consensus 181 ~~~~ 184 (282)
T PF14938_consen 181 VAKK 184 (282)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5433
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.15 E-value=0.00026 Score=58.80 Aligned_cols=133 Identities=14% Similarity=0.115 Sum_probs=97.5
Q ss_pred HHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy8368 151 VLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKA 230 (372)
Q Consensus 151 ~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~a 230 (372)
....+...+......+..+++..+...+...+.-.+..+ .-....+.+|.+++..|+|++|+..++.+
T Consensus 7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~------------ya~~A~l~lA~~~~~~g~~~~A~~~l~~~ 74 (145)
T PF09976_consen 7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP------------YAALAALQLAKAAYEQGDYDEAKAALEKA 74 (145)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345677777777777788999988887877776654431 12456778999999999999999999999
Q ss_pred HHhhccCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368 231 LQFASHFATK---DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCM 304 (372)
Q Consensus 231 L~~~~~~~p~---~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 304 (372)
+. ..|+ ...+.+|+|.+++.+|+|++|+..+..+ +++.....+...++.+....++..+ .+..|.
T Consensus 75 ~~----~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~----~~~~~~~~~~~~~Gdi~~~~g~~~~-A~~~y~ 142 (145)
T PF09976_consen 75 LA----NAPDPELKPLARLRLARILLQQGQYDEALATLQQI----PDEAFKALAAELLGDIYLAQGDYDE-ARAAYQ 142 (145)
T ss_pred Hh----hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc----cCcchHHHHHHHHHHHHHHCCCHHH-HHHHHH
Confidence 97 4444 2568999999999999999999999662 2222233677777777777666543 334443
No 142
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.15 E-value=3.7e-05 Score=81.04 Aligned_cols=115 Identities=11% Similarity=0.035 Sum_probs=91.3
Q ss_pred hHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc
Q psy8368 162 GKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD 241 (372)
Q Consensus 162 Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~ 241 (372)
|..+...|+|.+|+..|+++++..|.. ..++.-++..|..++++.+|+..+.+++. .+|.+
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n---------------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~----~dp~~ 169 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTN---------------PDLISGMIMTQADAGRGGVVLKQATELAE----RDPTV 169 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHhhcCCHHHHHHHHHHhcc----cCcch
Confidence 556667899999999999999987665 35556779999999999999999999997 88874
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Q psy8368 242 VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKET 299 (372)
Q Consensus 242 ~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~ 299 (372)
... .-++.++...+++.+|+..|+++++++|++. ++..++-.+....+....+.
T Consensus 170 ~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~---e~~~~~~~~l~~~~~~~~a~ 223 (822)
T PRK14574 170 QNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSE---EVLKNHLEILQRNRIVEPAL 223 (822)
T ss_pred HHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCcHHHH
Confidence 443 3445555557777779999999999999999 88888777776665554333
No 143
>KOG1173|consensus
Probab=98.13 E-value=1.8e-05 Score=77.22 Aligned_cols=140 Identities=17% Similarity=0.085 Sum_probs=104.8
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHH-------------HHHHH------HHHHHHHHHHHHHH
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQ-------------MQLEE------YLCRVYRNLMVCYN 215 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~-------------~~~~~------l~~~l~~Nla~~~~ 215 (372)
+..+...|..+...+..++|+..|..|-++++....|.--.. .-+.. .-.-+++-+|.+.+
T Consensus 346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay 425 (611)
T KOG1173|consen 346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAY 425 (611)
T ss_pred cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheee
Confidence 566778899999999999999999999988876543321000 00000 00235666888888
Q ss_pred HccCHHHHHHHHHHHHHhhccCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368 216 NNKQYKLTCDCASKALQFASHFATKD---VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN 292 (372)
Q Consensus 216 kl~~y~~Ai~~~~~aL~~~~~~~p~~---~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~ 292 (372)
+.+.|.+|+.++..+|...+...+.. .-.+.++|-+|.+++.|++|+.++++||.+.|.+. .++..++-+...+
T Consensus 426 ~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~---~~~asig~iy~ll 502 (611)
T KOG1173|consen 426 TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA---STHASIGYIYHLL 502 (611)
T ss_pred hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch---hHHHHHHHHHHHh
Confidence 89999999999999996444444432 23478999999999999999999999999999999 8888888877776
Q ss_pred HHHHH
Q psy8368 293 QQYQK 297 (372)
Q Consensus 293 ~~~~~ 297 (372)
+....
T Consensus 503 gnld~ 507 (611)
T KOG1173|consen 503 GNLDK 507 (611)
T ss_pred cChHH
Confidence 65543
No 144
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.12 E-value=0.00016 Score=70.83 Aligned_cols=124 Identities=11% Similarity=0.052 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy8368 151 VLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKA 230 (372)
Q Consensus 151 ~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~a 230 (372)
+.+++......|-..+..|+|..|.....++.+..+.. ...+.-.|.++..+|+++.|..++.++
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~---------------~~~~llaA~aa~~~g~~~~A~~~l~~a 144 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEP---------------VLNLIKAAEAAQQRGDEARANQHLEEA 144 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45678888899999999999999999999988775432 234445566666677777777777776
Q ss_pred HHhhccCCCCch-hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368 231 LQFASHFATKDV-KLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ 296 (372)
Q Consensus 231 L~~~~~~~p~~~-ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~ 296 (372)
.+ ..|++. -+....+..+...|+++.|+..+++.++..|+++ .+...+..+....++..
T Consensus 145 ~~----~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~---~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 145 AE----LAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHK---EVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HH----hCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhHH
Confidence 65 445543 2333356667777777777777777777777776 66666666655555553
No 145
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.12 E-value=0.00017 Score=70.48 Aligned_cols=125 Identities=9% Similarity=0.019 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy8368 151 VLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKA 230 (372)
Q Consensus 151 ~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~a 230 (372)
+.+++......|-..+..|+|..|.+...++-...+.. ...+...+.+..+.|+++.|..++.++
T Consensus 80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p---------------~l~~llaA~aA~~~g~~~~A~~~l~~A 144 (398)
T PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQP---------------VVNYLLAAEAAQQRGDEARANQHLERA 144 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccch---------------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45678888899999999999999997666655432110 223444456668899999999999999
Q ss_pred HHhhccCCCCchh-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHH
Q psy8368 231 LQFASHFATKDVK-LFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQK 297 (372)
Q Consensus 231 L~~~~~~~p~~~k-a~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~ 297 (372)
.+ .+|++.- .....+..+...|+++.|+..++++.+.+|+++ .+...+..+....++...
T Consensus 145 ~~----~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~---~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 145 AE----LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHP---EVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred Hh----cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHhHHH
Confidence 87 7777643 344568899999999999999999999999998 888888887777666544
No 146
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.11 E-value=5e-05 Score=79.71 Aligned_cols=130 Identities=10% Similarity=-0.049 Sum_probs=91.5
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~ 233 (372)
....+....+.+...+++++|+.....++...+.. ..+|+-+|..|++.+++.++... .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~---------------i~~yy~~G~l~~q~~~~~~~~lv--~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS---------------ISALYISGILSLSRRPLNDSNLL--NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc---------------eehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence 34556667778888999999999999999887665 45555666666666655555444 33331
Q ss_pred hcc---------------CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368 234 ASH---------------FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKE 298 (372)
Q Consensus 234 ~~~---------------~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~ 298 (372)
... ..+.+-.|++.+|.||-.+|++++|...|+++++++|+|+ .+.+.++-..... .-++
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~---~aLNn~AY~~ae~--dL~K 167 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNP---EIVKKLATSYEEE--DKEK 167 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHh--hHHH
Confidence 100 2244457999999999999999999999999999999999 8888887766665 2333
Q ss_pred HHHHHHh
Q psy8368 299 TKARCMK 305 (372)
Q Consensus 299 ~~~~~~~ 305 (372)
...++.+
T Consensus 168 A~~m~~K 174 (906)
T PRK14720 168 AITYLKK 174 (906)
T ss_pred HHHHHHH
Confidence 4444444
No 147
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.10 E-value=3.6e-05 Score=73.55 Aligned_cols=100 Identities=10% Similarity=-0.041 Sum_probs=85.2
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA 234 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~ 234 (372)
...+...|..+...|++.+|...|++++...+.. ..++.++|.+|...|++++|+.++.+++.
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~---------------~~~~~~la~i~~~~g~~~eA~~~l~~~l~-- 176 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD---------------AWAVHAVAHVLEMQGRFKEGIAFMESWRD-- 176 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------cHHHHHHHHHHHHcCCHHHHHHHHHhhhh--
Confidence 3455567889999999999999999999986654 46788999999999999999999999997
Q ss_pred ccCCCC----chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q psy8368 235 SHFATK----DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAA 273 (372)
Q Consensus 235 ~~~~p~----~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p 273 (372)
..|. ....++.+|.++..+|++++|+..|++++...|
T Consensus 177 --~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 177 --TWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred --ccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 5443 234577899999999999999999999987777
No 148
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.08 E-value=8.4e-06 Score=49.59 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q psy8368 242 VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD 275 (372)
Q Consensus 242 ~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~ 275 (372)
+++++.+|.+|..+|++++|+++|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3678889999999999999999999999998875
No 149
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.08 E-value=0.0002 Score=59.46 Aligned_cols=109 Identities=15% Similarity=0.134 Sum_probs=86.4
Q ss_pred HHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc-----C-CCh-HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy8368 158 LGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ-----V-TNY-EDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKA 230 (372)
Q Consensus 158 ~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~-----~-~~~-~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~a 230 (372)
+...|......++...++..|.+++.++.... . .|- .....++.....+...++.++...|+|++|+..|+++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34456666777899999999999998874432 1 232 3456677788889999999999999999999999999
Q ss_pred HHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368 231 LQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARK 270 (372)
Q Consensus 231 L~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~ 270 (372)
+. .+|-+-.+|..+-.+|...|+..+|+..|.++..
T Consensus 89 l~----~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 89 LA----LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HH----HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred Hh----cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 98 9999999999999999999999999999998853
No 150
>KOG4648|consensus
Probab=98.05 E-value=9.1e-06 Score=74.80 Aligned_cols=86 Identities=13% Similarity=0.119 Sum_probs=72.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc----cHHHHH
Q psy8368 207 YRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS----VRAEID 282 (372)
Q Consensus 207 ~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~----~~~~~~ 282 (372)
.--.|+-|+++|.|++||.+|.+++. ++|.|+-.+.+||.||+++..|..|..++..|+.|+.... ++..++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia----~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIA----VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQAR 175 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhc----cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 34678999999999999999999996 9999999999999999999999999999999999997654 455666
Q ss_pred HHHHHHHHHHHHHH
Q psy8368 283 KEILKADLGNQQYQ 296 (372)
Q Consensus 283 ~~l~~~~~~~~~~~ 296 (372)
..|+.+....++++
T Consensus 176 ~~Lg~~~EAKkD~E 189 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCE 189 (536)
T ss_pred HHHhhHHHHHHhHH
Confidence 66666655544443
No 151
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.03 E-value=9e-05 Score=70.81 Aligned_cols=148 Identities=11% Similarity=0.040 Sum_probs=108.7
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCC------------hHHHHHHHH----------HHHHHHHHHHH
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTN------------YEDQMQLEE----------YLCRVYRNLMV 212 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~------------~~~~~~~~~----------l~~~l~~Nla~ 212 (372)
.+.....|..++..|++..|...+.+++...|...... ......... .....+.++|.
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 122 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF 122 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence 34455678899999999999999999998765432100 000000111 11346678899
Q ss_pred HHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc-cHHHHHHHHHHHHHH
Q psy8368 213 CYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS-VRAEIDKEILKADLG 291 (372)
Q Consensus 213 ~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~-~~~~~~~~l~~~~~~ 291 (372)
++...|++++|+..++++++ ++|++..++..+|.+|...|++++|+..+.+++...|.+. ......-.+..+...
T Consensus 123 ~~~~~G~~~~A~~~~~~al~----~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALE----LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHh----hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 99999999999999999998 9999999999999999999999999999999999988654 001123357777777
Q ss_pred HHHHHHHHHHHHHhhc
Q psy8368 292 NQQYQKETKARCMKMF 307 (372)
Q Consensus 292 ~~~~~~~~~~~~~~~~ 307 (372)
.+++.+ ....|.+..
T Consensus 199 ~G~~~~-A~~~~~~~~ 213 (355)
T cd05804 199 RGDYEA-ALAIYDTHI 213 (355)
T ss_pred CCCHHH-HHHHHHHHh
Confidence 776654 445666654
No 152
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.03 E-value=4.5e-05 Score=73.60 Aligned_cols=98 Identities=18% Similarity=0.250 Sum_probs=72.4
Q ss_pred HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368 160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT 239 (372)
Q Consensus 160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p 239 (372)
-.+..++..++-.+|+....+++...+.. ..++.-.|..+++.++|+.|+..++++.+ +.|
T Consensus 205 ~LA~v~l~~~~E~~AI~ll~~aL~~~p~d---------------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~----lsP 265 (395)
T PF09295_consen 205 LLARVYLLMNEEVEAIRLLNEALKENPQD---------------SELLNLQAEFLLSKKKYELALEIAKKAVE----LSP 265 (395)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCc
Confidence 35666666677777777777777554332 46666778888888888888888888887 888
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 240 KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 240 ~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
.+.++|+.+|.+|..+|+|+.|+..++.+-.+.+.+.
T Consensus 266 ~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k 302 (395)
T PF09295_consen 266 SEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDK 302 (395)
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccc
Confidence 8888888888888888888888877776654443433
No 153
>KOG1156|consensus
Probab=98.03 E-value=4.9e-05 Score=75.28 Aligned_cols=121 Identities=12% Similarity=0.109 Sum_probs=98.8
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS 235 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~ 235 (372)
..++.+.-..|..++|.+.+...+..|.-.+.. ...+.-.|..+..+|+-++|..++..+++
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eH---------------geslAmkGL~L~~lg~~~ea~~~vr~glr--- 69 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEH---------------GESLAMKGLTLNCLGKKEEAYELVRLGLR--- 69 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCcc---------------chhHHhccchhhcccchHHHHHHHHHHhc---
Confidence 345666677778888888888888877754433 12333457777889999999999999997
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368 236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKE 298 (372)
Q Consensus 236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~ 298 (372)
.|+.+.-.|.-+|..+..-++|++|+.+|+.|++++|+|. .+.+.++-++..++++...
T Consensus 70 -~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~---qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 70 -NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL---QILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred -cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHHHhhhhH
Confidence 8899889999999999999999999999999999999999 9999999998888877643
No 154
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.00 E-value=0.0002 Score=71.96 Aligned_cols=118 Identities=16% Similarity=0.078 Sum_probs=88.2
Q ss_pred HHHHHHHhhHHHHhccC---HHHHHHHHHHHHHhhhhccC----------------CC-hHHHHHHHH-H----------
Q psy8368 154 RAQELGASGKNAFNDKN---IVSAVRRYRDAVKLLINTQV----------------TN-YEDQMQLEE-Y---------- 202 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~---~~~A~~~y~~al~~~~~~~~----------------~~-~~~~~~~~~-l---------- 202 (372)
.+-.+.-+|..++..+. +..|+.+|++|++..|.... +. ......... .
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 35566677888876554 88999999999988755321 00 111111111 0
Q ss_pred -HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 203 -LCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 203 -~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
...+|.-+|..+...|++++|...+++|+. ++| +..+|+.+|+++...|++++|++.|.+|+.++|.++
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~----L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAID----LEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 114466677788888999999999999997 888 578999999999999999999999999999999987
No 155
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.99 E-value=0.00015 Score=58.14 Aligned_cols=97 Identities=12% Similarity=0.036 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHH
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKE 284 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~ 284 (372)
.+++++|.++-.+|+..+|+..|++++..- ..++....++..+|.+|..+|++++|+..+++++.-.|++.....+...
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 367899999999999999999999999711 1123357799999999999999999999999999998983322267766
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8368 285 ILKADLGNQQYQKETKAR 302 (372)
Q Consensus 285 l~~~~~~~~~~~~~~~~~ 302 (372)
+..+....+..++...-.
T Consensus 81 ~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 666666666665544433
No 156
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.98 E-value=0.00018 Score=66.03 Aligned_cols=141 Identities=13% Similarity=0.061 Sum_probs=108.3
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhc-----------c--CCChHHH-----------HHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINT-----------Q--VTNYEDQ-----------MQLEEYLCRVYR 208 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~-----------~--~~~~~~~-----------~~~~~l~~~l~~ 208 (372)
++.-.+.+.|..|...|-|+.|...|...++.-... . ..|...- ...+-..+.+|+
T Consensus 105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC 184 (389)
T COG2956 105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC 184 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence 456778889999999999999999887655421000 0 0111100 111223367888
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368 209 NLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKA 288 (372)
Q Consensus 209 Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~ 288 (372)
-+|..++...+.+.|+....+|++ .+|+++.|-.-+|.+++..|+|+.|++.++.+++-||..- .++...|..|
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlq----a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl--~evl~~L~~~ 258 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQ----ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL--SEVLEMLYEC 258 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHh----hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH--HHHHHHHHHH
Confidence 888888888999999999999998 9999999999999999999999999999999999999864 4788888888
Q ss_pred HHHHHHHHHHH
Q psy8368 289 DLGNQQYQKET 299 (372)
Q Consensus 289 ~~~~~~~~~~~ 299 (372)
...+++...-.
T Consensus 259 Y~~lg~~~~~~ 269 (389)
T COG2956 259 YAQLGKPAEGL 269 (389)
T ss_pred HHHhCCHHHHH
Confidence 88777665443
No 157
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.95 E-value=2.1e-05 Score=51.16 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q psy8368 243 KLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILK 287 (372)
Q Consensus 243 ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~ 287 (372)
.+++.+|.+|..+|++++|+..|+++++.+|+|. .++..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~---~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP---EAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH---HHHHHhhh
Confidence 4677777888888888888888888888888777 77666553
No 158
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.95 E-value=0.00016 Score=68.36 Aligned_cols=114 Identities=13% Similarity=0.185 Sum_probs=92.6
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccC---CChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQV---TNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASK 229 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~---~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~ 229 (372)
+....-...|...|++++|..|...|..||.++.+... +-......+..+..-+...+..||+++++.+-|+.+..+
T Consensus 174 kwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr 253 (569)
T PF15015_consen 174 KWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHR 253 (569)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence 44455556888999999999999999999999976431 112223344445566778899999999999999999999
Q ss_pred HHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368 230 ALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARK 270 (372)
Q Consensus 230 aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~ 270 (372)
.+- ++|.++.-++|.|.|+..|.+|.+|-..+.-|.=
T Consensus 254 sI~----lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 254 SIN----LNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred hhh----cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 996 9999999999999999999999999877766643
No 159
>KOG1129|consensus
Probab=97.94 E-value=8.1e-05 Score=68.32 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=60.9
Q ss_pred HHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCC
Q psy8368 159 GASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFA 238 (372)
Q Consensus 159 k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~ 238 (372)
.+.|..|++.|-+.+|...++.+|...+.. ..+.-++.+|.+..+...|+..+.+.|+ .-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~----------------dTfllLskvY~ridQP~~AL~~~~~gld----~f 286 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP----------------DTFLLLSKVYQRIDQPERALLVIGEGLD----SF 286 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCch----------------hHHHHHHHHHHHhccHHHHHHHHhhhhh----cC
Confidence 468999999999999999999999876542 3344445555555555555555555554 44
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 239 TKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 239 p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
|.++--+.-.|.+|..++++++|++.|+.+++++|.|.
T Consensus 287 P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nv 324 (478)
T KOG1129|consen 287 PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINV 324 (478)
T ss_pred CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccc
Confidence 55555555555555555555555555555555555543
No 160
>KOG2003|consensus
Probab=97.92 E-value=0.00034 Score=66.79 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=55.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q psy8368 210 LMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKAD 289 (372)
Q Consensus 210 la~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~ 289 (372)
+|..|+...-+++||.++++|-- ++|+.+|-....|.|+...|+|..|.+.|+..-+.-|.|. ++.+.|-++-
T Consensus 632 l~ayyidtqf~ekai~y~ekaal----iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl---dclkflvri~ 704 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAAL----IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL---DCLKFLVRIA 704 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHh----cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch---HHHHHHHHHh
Confidence 56666667777777777777753 7777777777777777777777777777777777777777 7777766665
Q ss_pred HHH
Q psy8368 290 LGN 292 (372)
Q Consensus 290 ~~~ 292 (372)
-.+
T Consensus 705 ~dl 707 (840)
T KOG2003|consen 705 GDL 707 (840)
T ss_pred ccc
Confidence 443
No 161
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.92 E-value=0.0011 Score=59.29 Aligned_cols=152 Identities=12% Similarity=0.101 Sum_probs=114.6
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA 234 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~ 234 (372)
+..+.+.|...++.|+|.+|+..|.......+..+-. -.....++.++++-++|..|+...++-++
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~------------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~-- 99 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS------------EQAQLDLAYAYYKNGEYDLALAYIDRFIR-- 99 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc------------HHHHHHHHHHHHhcccHHHHHHHHHHHHH--
Confidence 7788999999999999999999999988776654322 35667889999999999999999999998
Q ss_pred ccCCCCchh---HHHHHHHHHHhcC--------CHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368 235 SHFATKDVK---LFFVWGKALIGLQ--------EWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARC 303 (372)
Q Consensus 235 ~~~~p~~~k---a~~r~a~a~~~l~--------~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 303 (372)
+.|++.. ++|-+|.++...= -...|+..|+..+.--|+.....++...+..++..+...+-.....|
T Consensus 100 --lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY 177 (254)
T COG4105 100 --LYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYY 177 (254)
T ss_pred --hCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666544 7888999977542 23678889999999999998778888888888887776665444333
Q ss_pred HhhccCCCCCCcchHHHhhhhhh
Q psy8368 304 MKMFSSSSSPSQHSNVVRIAYQE 326 (372)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~ 326 (372)
.+ .+....++..++..+..
T Consensus 178 ~k----r~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 178 LK----RGAYVAAINRFEEVLEN 196 (254)
T ss_pred HH----hcChHHHHHHHHHHHhc
Confidence 33 22222344444444433
No 162
>KOG4162|consensus
Probab=97.92 E-value=0.00016 Score=73.05 Aligned_cols=120 Identities=15% Similarity=-0.047 Sum_probs=103.9
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA 234 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~ 234 (372)
..-+.-.+..+.+.++-++|..+..+|-.+.+.. ...|+-+|.++...|++.+|...|..|+.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~---------------~~~~~~~G~~~~~~~~~~EA~~af~~Al~-- 712 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS---------------ASVYYLRGLLLEVKGQLEEAKEAFLVALA-- 712 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh---------------HHHHHHhhHHHHHHHhhHHHHHHHHHHHh--
Confidence 3344456666667777888888888888876554 78899999999999999999999999996
Q ss_pred ccCCCCchhHHHHHHHHHHhcCCHHHHHH--HHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368 235 SHFATKDVKLFFVWGKALIGLQEWTSAIK--HLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ 296 (372)
Q Consensus 235 ~~~~p~~~ka~~r~a~a~~~l~~~e~A~~--~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~ 296 (372)
+||+++.+..-+|.++...|+-.-|.. .+..|+++||.|. +++..++.+.+..++.+
T Consensus 713 --ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~---eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 713 --LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH---EAWYYLGEVFKKLGDSK 771 (799)
T ss_pred --cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccchH
Confidence 999999999999999999998888877 9999999999999 99999999888777664
No 163
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.89 E-value=0.00016 Score=65.26 Aligned_cols=103 Identities=9% Similarity=0.005 Sum_probs=86.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368 207 YRNLMVCYNNNKQYKLTCDCASKALQFASHFATK---DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK 283 (372)
Q Consensus 207 ~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~---~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~ 283 (372)
.+|.|.-+++.|+|..|...+..-++ .-|+ -+.|+|++|.+++.+|+|++|...|..+.+-.|+++-..+..-
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~----~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIK----KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 78899999999999999999999998 6666 4669999999999999999999999999999998875557777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy8368 284 EILKADLGNQQYQKETKARCMKMFSSSSSPS 314 (372)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (372)
.|+.+..++++. ...+..|+.+...-+..+
T Consensus 220 Klg~~~~~l~~~-d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 220 KLGVSLGRLGNT-DEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHhcCH-HHHHHHHHHHHHHCCCCH
Confidence 777777776654 456677777776666653
No 164
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00059 Score=62.35 Aligned_cols=116 Identities=13% Similarity=0.051 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHHHHhhcCCCccHHHH
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQ---EWTSAIKHLKTARKLAAKDSVRAEI 281 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~---~~e~A~~~~~~al~l~p~~~~~~~~ 281 (372)
.-+.-+|.+|+.++++..|...|.+|++ +.|+|+..+.-+|.+++... ...+|...|++++++||+|. .+
T Consensus 157 egW~~Lg~~ym~~~~~~~A~~AY~~A~r----L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~i---ra 229 (287)
T COG4235 157 EGWDLLGRAYMALGRASDALLAYRNALR----LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANI---RA 229 (287)
T ss_pred hhHHHHHHHHHHhcchhHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccH---HH
Confidence 4556699999999999999999999998 99999999999999987654 46789999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcchHHHhhhhhhcc
Q psy8368 282 DKEILKADLGNQQYQKETKARCMKMFSSSSSPSQHSNVVRIAYQEHE 328 (372)
Q Consensus 282 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (372)
...|+......+++. .....|+.|++...........++..+...-
T Consensus 230 l~lLA~~afe~g~~~-~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~~ 275 (287)
T COG4235 230 LSLLAFAAFEQGDYA-EAAAAWQMLLDLLPADDPRRSLIERSIARAL 275 (287)
T ss_pred HHHHHHHHHHcccHH-HHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Confidence 999999888888885 4567899999988887666666666655443
No 165
>KOG4151|consensus
Probab=97.86 E-value=6e-05 Score=76.38 Aligned_cols=113 Identities=22% Similarity=0.317 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH--ccCHHHHHHH
Q psy8368 149 AKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN--NKQYKLTCDC 226 (372)
Q Consensus 149 ~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k--l~~y~~Ai~~ 226 (372)
...+.++...+.+||.+|.+++|..|...|..++.+++... ...+.++.|.+.||+. +++|..++..
T Consensus 47 ~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~-----------~~~a~~~~~~~s~~m~~~l~~~~~~~~E 115 (748)
T KOG4151|consen 47 EVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDH-----------HVVATLRSNQASCYMQLGLGEYPKAIPE 115 (748)
T ss_pred HHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccc-----------hhhhhHHHHHHHHHhhcCccchhhhcCc
Confidence 34678999999999999999999999999999999987431 1226789999999886 5689999999
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 227 ASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 227 ~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
|+-++. ..|...+++++++.+|..++.++-|++++.-....+|++.
T Consensus 116 ~~la~~----~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~ 161 (748)
T KOG4151|consen 116 CELALE----SQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNV 161 (748)
T ss_pred hhhhhh----ccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 999997 9999999999999999999999999999999999999996
No 166
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.83 E-value=1.5e-05 Score=48.76 Aligned_cols=34 Identities=15% Similarity=0.365 Sum_probs=31.3
Q ss_pred HHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHH
Q psy8368 226 CASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIK 263 (372)
Q Consensus 226 ~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~ 263 (372)
+|++||+ ++|+|+.+|+++|.+|..+|++++|++
T Consensus 1 ~y~kAie----~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIE----LNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHH----HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3788998 999999999999999999999999963
No 167
>KOG1128|consensus
Probab=97.83 E-value=7.8e-05 Score=74.81 Aligned_cols=81 Identities=16% Similarity=0.220 Sum_probs=72.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q psy8368 210 LMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKAD 289 (372)
Q Consensus 210 la~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~ 289 (372)
+|......++|.++..+++.+++ ++|-....||++|.|...+++++.|..+|.++..++|++. ++++.+...+
T Consensus 491 ~~~~~~~~~~fs~~~~hle~sl~----~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~---eaWnNls~ay 563 (777)
T KOG1128|consen 491 LALLILSNKDFSEADKHLERSLE----INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA---EAWNNLSTAY 563 (777)
T ss_pred hccccccchhHHHHHHHHHHHhh----cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch---hhhhhhhHHH
Confidence 34444557999999999999998 9999999999999999999999999999999999999999 9999999988
Q ss_pred HHHHHHHH
Q psy8368 290 LGNQQYQK 297 (372)
Q Consensus 290 ~~~~~~~~ 297 (372)
-++++.++
T Consensus 564 i~~~~k~r 571 (777)
T KOG1128|consen 564 IRLKKKKR 571 (777)
T ss_pred HHHhhhHH
Confidence 87776544
No 168
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.83 E-value=2.9e-05 Score=47.26 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD 241 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~ 241 (372)
.+++|+|.||..+++|++|+.+|++||+ ++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE----LDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH----HSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH----HCcCC
Confidence 5789999999999999999999999998 88864
No 169
>KOG3060|consensus
Probab=97.82 E-value=0.00079 Score=59.92 Aligned_cols=128 Identities=17% Similarity=0.104 Sum_probs=81.6
Q ss_pred HHhhHHHHhccCHHHHHHHHHHHHHhhhhcc-------------CCChHHHHHHHHHH------HHHHHHHHHHHHHccC
Q psy8368 159 GASGKNAFNDKNIVSAVRRYRDAVKLLINTQ-------------VTNYEDQMQLEEYL------CRVYRNLMVCYNNNKQ 219 (372)
Q Consensus 159 k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~-------------~~~~~~~~~~~~l~------~~l~~Nla~~~~kl~~ 219 (372)
+-.|..+-..|.|++|+..|..-+.-.|... ..+-+....+.+.. ..++.-+|..|+.+++
T Consensus 90 ~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 90 KLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH
Confidence 4456677778899999999988776543221 00111112222221 2456667777888888
Q ss_pred HHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368 220 YKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQ---EWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ 293 (372)
Q Consensus 220 y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~---~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~ 293 (372)
|.+|.-++++.+= .+|.|+--+-|+|..++-+| +++-|..+|.++++++|.|. -....+-.+-..+.
T Consensus 170 f~kA~fClEE~ll----~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~---ral~GI~lc~~~la 239 (289)
T KOG3060|consen 170 FEKAAFCLEELLL----IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNL---RALFGIYLCGSALA 239 (289)
T ss_pred HHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH---HHHHHHHHHHHHHH
Confidence 8888888887774 77777777777777776655 56677788888888888665 45555555544444
No 170
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.82 E-value=0.00011 Score=49.61 Aligned_cols=48 Identities=8% Similarity=0.020 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368 243 KLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ 293 (372)
Q Consensus 243 ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~ 293 (372)
..+|.+|.++.++|+|+.|+.+++.+|+++|+|. ++..+...+..++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~---Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR---QAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H---HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHHh
Confidence 3578999999999999999999999999999999 88877777776654
No 171
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.00058 Score=62.78 Aligned_cols=140 Identities=13% Similarity=0.101 Sum_probs=99.0
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc-----------------CCCh---HHHH---HHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ-----------------VTNY---EDQM---QLEEYLCRVYRN 209 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~-----------------~~~~---~~~~---~~~~l~~~l~~N 209 (372)
+..+.....||.+-..|..+.|++..+..+..-+..- ..-+ +.-. ...+....++--
T Consensus 67 ~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~Alqq 146 (389)
T COG2956 67 ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQ 146 (389)
T ss_pred hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 5567788899999999999999997665443221100 0000 0000 001223456666
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhhccCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHH
Q psy8368 210 LMVCYNNNKQYKLTCDCASKALQFASHFATKD-----VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKE 284 (372)
Q Consensus 210 la~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~-----~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~ 284 (372)
+...|.+..+|++||+..++..+ +++.. +.-|.-+|..++...+++.|+..+.+|++.+|+.. -+.-.
T Consensus 147 Ll~IYQ~treW~KAId~A~~L~k----~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv---RAsi~ 219 (389)
T COG2956 147 LLNIYQATREWEKAIDVAERLVK----LGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV---RASII 219 (389)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH----cCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce---ehhhh
Confidence 77889999999999999999887 66552 33567899999999999999999999999999998 66666
Q ss_pred HHHHHHHHHHHHHHH
Q psy8368 285 ILKADLGNQQYQKET 299 (372)
Q Consensus 285 l~~~~~~~~~~~~~~ 299 (372)
++.+....+++..+.
T Consensus 220 lG~v~~~~g~y~~AV 234 (389)
T COG2956 220 LGRVELAKGDYQKAV 234 (389)
T ss_pred hhHHHHhccchHHHH
Confidence 777766666665443
No 172
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.79 E-value=0.0002 Score=71.64 Aligned_cols=85 Identities=19% Similarity=0.196 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK 283 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~ 283 (372)
..+++.+|++|..+|+|++|+.+.++||. ..|..+..|+.+|++|...|++.+|.+.+..|..+|+.|. -+..
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~----htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR---yiNs 266 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIE----HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR---YINS 266 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH---HHHH
Confidence 56778899999999999999999999998 9999999999999999999999999999999999999998 6655
Q ss_pred HHHHHHHHHHHH
Q psy8368 284 EILKADLGNQQY 295 (372)
Q Consensus 284 ~l~~~~~~~~~~ 295 (372)
...+..-+....
T Consensus 267 K~aKy~LRa~~~ 278 (517)
T PF12569_consen 267 KCAKYLLRAGRI 278 (517)
T ss_pred HHHHHHHHCCCH
Confidence 555554444444
No 173
>KOG1130|consensus
Probab=97.78 E-value=0.0002 Score=67.63 Aligned_cols=109 Identities=15% Similarity=0.152 Sum_probs=88.1
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA 234 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~ 234 (372)
-..+-+.||.+.-.|+|+.|+++|++++.+....... ...+...+.+|+.|.-+++|.+||.|..+-|.++
T Consensus 235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r---------~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR---------TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch---------hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456689999999999999999999998875433211 1124556679999999999999999999999876
Q ss_pred ccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368 235 SHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLA 272 (372)
Q Consensus 235 ~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~ 272 (372)
..+... ...|++-+|.+|..+|+.+.|+....+.+++.
T Consensus 306 qeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 306 QELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 555433 67899999999999999999999988888763
No 174
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.75 E-value=0.0012 Score=64.66 Aligned_cols=156 Identities=12% Similarity=0.045 Sum_probs=110.4
Q ss_pred HHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccC
Q psy8368 158 LGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHF 237 (372)
Q Consensus 158 ~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~ 237 (372)
+.-.|..+..+|++..|...|.++.+..+... ..+...++..++..|+|+.|+..++..++ .
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~--------------l~~~~~~a~l~l~~~~~~~Al~~l~~l~~----~ 182 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAELAGNDN--------------ILVEIARTRILLAQNELHAARHGVDKLLE----M 182 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc--------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHH----h
Confidence 45678888899999999999999987765431 23444568899999999999999999998 8
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc-cHHHH--HHH---HHH---------HHHHHHHH------H
Q psy8368 238 ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS-VRAEI--DKE---ILK---------ADLGNQQY------Q 296 (372)
Q Consensus 238 ~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~-~~~~~--~~~---l~~---------~~~~~~~~------~ 296 (372)
.|+++.++..++.+|...|++++|+..+.+.++....+. ....+ ... +.. +....... .
T Consensus 183 ~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~ 262 (409)
T TIGR00540 183 APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHN 262 (409)
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCC
Confidence 999999999999999999999999999999998855443 00000 111 100 00001100 1
Q ss_pred HHHHHHHHhhccCCCCCCcchHHHhhhhhhccCCC
Q psy8368 297 KETKARCMKMFSSSSSPSQHSNVVRIAYQEHEQVR 331 (372)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (372)
......+...+...+..+++....++.++..|+..
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 11223344456666666678888888888777654
No 175
>KOG4234|consensus
Probab=97.74 E-value=0.0002 Score=61.51 Aligned_cols=100 Identities=22% Similarity=0.192 Sum_probs=73.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhhccCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q psy8368 209 NLMVCYNNNKQYKLTCDCASKALQFASHFATK-DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILK 287 (372)
Q Consensus 209 Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~-~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~ 287 (372)
--|+-+++.|+|.+|...|..||.+++..... ..-.|.++|.|+++++.++.|+.++.+|++|.|.+. .+....+.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~---kAl~RRAe 176 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE---KALERRAE 176 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH---HHHHHHHH
Confidence 34677889999999999999999844322111 333677999999999999999999999999999987 55555555
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368 288 ADLGNQQYQKETKARCMKMFSSSSS 312 (372)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (372)
+...+.++. ..-..|++++...+.
T Consensus 177 ayek~ek~e-ealeDyKki~E~dPs 200 (271)
T KOG4234|consen 177 AYEKMEKYE-EALEDYKKILESDPS 200 (271)
T ss_pred HHHhhhhHH-HHHHHHHHHHHhCcc
Confidence 555554443 334556666655444
No 176
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.72 E-value=6.9e-05 Score=45.50 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q psy8368 243 KLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD 275 (372)
Q Consensus 243 ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~ 275 (372)
++|+.+|.+|..+|++++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578899999999999999999999999998854
No 177
>KOG1174|consensus
Probab=97.72 E-value=0.00057 Score=64.72 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=102.0
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHH---------HHHHHHHHHHHH----------HHHHHHHH
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYED---------QMQLEEYLCRVY----------RNLMVCYN 215 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~---------~~~~~~l~~~l~----------~Nla~~~~ 215 (372)
..-+-..|..+|..|++.+|+..|.++..+.++.-..-+.- -.....+...++ +=-+...+
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLY 311 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhh
Confidence 44566789999999999999999999988766543221110 011222221111 11233455
Q ss_pred HccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy8368 216 NNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQY 295 (372)
Q Consensus 216 kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~ 295 (372)
..++|..|+.+..++++ .+|++..+|.-.|.++..+++.++|+-.|+.|..+.|.+- .+...|-.+....+..
T Consensus 312 ~~K~~~rAL~~~eK~I~----~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL---~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCID----SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL---EIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhHHHHHHHHHHHhc----cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhH---HHHHHHHHHHHhhchH
Confidence 67899999999999998 9999999999999999999999999999999999999887 7777777776655555
Q ss_pred HH
Q psy8368 296 QK 297 (372)
Q Consensus 296 ~~ 297 (372)
++
T Consensus 385 kE 386 (564)
T KOG1174|consen 385 KE 386 (564)
T ss_pred HH
Confidence 44
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.68 E-value=0.002 Score=54.86 Aligned_cols=118 Identities=8% Similarity=0.026 Sum_probs=95.7
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~ 233 (372)
........||.+...|++.+|..+|.+++.=+ -..+ ..+++.+|++.+.++++..|....+...+
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~----fA~d----------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e- 152 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGI----FAHD----------AAMLLGLAQAQFAIQEFAAAQQTLEDLME- 152 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc----cCCC----------HHHHHHHHHHHHhhccHHHHHHHHHHHhh-
Confidence 34566678999999999999999999998643 1122 57788999999999999999999999997
Q ss_pred hccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368 234 ASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ 293 (372)
Q Consensus 234 ~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~ 293 (372)
.+|. .+...+-.|.+|..+|.+.+|...|+.++..-|+-. .+-........++
T Consensus 153 ---~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~----ar~~Y~e~La~qg 207 (251)
T COG4700 153 ---YNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ----ARIYYAEMLAKQG 207 (251)
T ss_pred ---cCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH----HHHHHHHHHHHhc
Confidence 5565 677888999999999999999999999999999865 4444444444333
No 179
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.67 E-value=9.9e-05 Score=47.93 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHH
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKA 251 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a 251 (372)
.++..+|.+|..+|++++|+..++++++ .+|+|..+++.+|.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~----~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA----LDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCCHHHHHHhhhC
Confidence 3578899999999999999999999998 999999999998863
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.67 E-value=0.001 Score=60.40 Aligned_cols=82 Identities=5% Similarity=-0.228 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchh---HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHH
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVK---LFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAE 280 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~k---a~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~ 280 (372)
...++..|.-+++.|+|++|+..+++++. ..|.... +.+++|.+|..+++|++|+..+++.+++.|+++..+.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDN----RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 34567788999999999999999999997 7777544 5699999999999999999999999999999985566
Q ss_pred HHHHHHHHH
Q psy8368 281 IDKEILKAD 289 (372)
Q Consensus 281 ~~~~l~~~~ 289 (372)
+...++.+.
T Consensus 108 a~Y~~g~~~ 116 (243)
T PRK10866 108 VLYMRGLTN 116 (243)
T ss_pred HHHHHHHhh
Confidence 666666553
No 181
>KOG1156|consensus
Probab=97.65 E-value=0.00066 Score=67.51 Aligned_cols=124 Identities=11% Similarity=0.108 Sum_probs=108.8
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
++++.+--.|-.+...|+-++|...-..+++....+ ..|+--+|..+..-++|++||++|+.||+
T Consensus 39 eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S---------------~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~ 103 (700)
T KOG1156|consen 39 EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS---------------HVCWHVLGLLQRSDKKYDEAIKCYRNALK 103 (700)
T ss_pred ccchhHHhccchhhcccchHHHHHHHHHHhccCccc---------------chhHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 345666678889999999999999999999876555 47888899999999999999999999998
Q ss_pred hhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368 233 FASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKE 298 (372)
Q Consensus 233 ~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~ 298 (372)
++|+|...|.-++.....+++|+.....-.+.+++.|++. +-+-.++..+.....+..+
T Consensus 104 ----~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~r---a~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 104 ----IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQR---ASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred ----cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 8787777777777766543
No 182
>PRK10941 hypothetical protein; Provisional
Probab=97.62 E-value=0.00075 Score=61.88 Aligned_cols=84 Identities=18% Similarity=0.166 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHH
Q psy8368 202 YLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEI 281 (372)
Q Consensus 202 l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~ 281 (372)
+....+.|+=.+|++.++|..|+.+++..|. ++|+++.-+--||.+|..+|.+..|+.+++..++..|+++.+..+
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~----l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQ----FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 4567888999999999999999999999997 999999888889999999999999999999999999999844444
Q ss_pred HHHHHHHH
Q psy8368 282 DKEILKAD 289 (372)
Q Consensus 282 ~~~l~~~~ 289 (372)
+..+..+.
T Consensus 255 k~ql~~l~ 262 (269)
T PRK10941 255 RAQIHSIE 262 (269)
T ss_pred HHHHHHHh
Confidence 44444443
No 183
>KOG4642|consensus
Probab=97.61 E-value=0.00011 Score=64.70 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=75.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368 209 NLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKA 288 (372)
Q Consensus 209 Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~ 288 (372)
--+.+|+.-+.|..|+.+|.+||. ++|..+.=|.++|.||+++.+++.+..+.++|++++|+.. ..+..++.+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~----~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~v---k~h~flg~~ 87 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAIC----INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLV---KAHYFLGQW 87 (284)
T ss_pred hccccccchhhhchHHHHHHHHHh----cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHH---HHHHHHHHH
Confidence 346778888999999999999996 9999998888999999999999999999999999999998 888888888
Q ss_pred HHHHHHHHHHHH
Q psy8368 289 DLGNQQYQKETK 300 (372)
Q Consensus 289 ~~~~~~~~~~~~ 300 (372)
......+....+
T Consensus 88 ~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 88 LLQSKGYDEAIK 99 (284)
T ss_pred HHhhccccHHHH
Confidence 877776665443
No 184
>PRK11906 transcriptional regulator; Provisional
Probab=97.61 E-value=0.00096 Score=64.63 Aligned_cols=83 Identities=11% Similarity=-0.020 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q psy8368 204 CRVYRNLMVCYNNN---------KQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK 274 (372)
Q Consensus 204 ~~l~~Nla~~~~kl---------~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~ 274 (372)
..+|.-+|.||+.+ ..-.+|....++|++ +||.++.|++.+|.++...++++.|...|++|+.++|+
T Consensus 295 a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve----ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn 370 (458)
T PRK11906 295 TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD----ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD 370 (458)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc
Confidence 66777888888765 235678888899997 99999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHHH
Q psy8368 275 DSVRAEIDKEILKADLGNQ 293 (372)
Q Consensus 275 ~~~~~~~~~~l~~~~~~~~ 293 (372)
.+ .++...+-+.-..+
T Consensus 371 ~A---~~~~~~~~~~~~~G 386 (458)
T PRK11906 371 IA---SLYYYRALVHFHNE 386 (458)
T ss_pred cH---HHHHHHHHHHHHcC
Confidence 99 88777776544433
No 185
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.61 E-value=0.001 Score=58.63 Aligned_cols=85 Identities=8% Similarity=-0.068 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK 283 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~ 283 (372)
...++..|..++..|+|.+|+..++.++...+ ..|--.+|.+.+|.+|...|+|..|+..+++.++..|+++....+..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYP-NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45678899999999999999999999997331 23446789999999999999999999999999999999986666666
Q ss_pred HHHHHH
Q psy8368 284 EILKAD 289 (372)
Q Consensus 284 ~l~~~~ 289 (372)
.++.+.
T Consensus 84 ~~g~~~ 89 (203)
T PF13525_consen 84 MLGLSY 89 (203)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 186
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.60 E-value=0.0003 Score=65.56 Aligned_cols=93 Identities=12% Similarity=0.072 Sum_probs=65.1
Q ss_pred HHHHHHHHHHH--cc--CHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHH
Q psy8368 206 VYRNLMVCYNN--NK--QYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEI 281 (372)
Q Consensus 206 l~~Nla~~~~k--l~--~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~ 281 (372)
+..++|.++.. .| .+.+|...|++..+ ..+.+++.+..+|.|++.+|+|++|...+..|+..+|+++ ++
T Consensus 165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~----~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~---d~ 237 (290)
T PF04733_consen 165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSD----KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP---DT 237 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC----CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH---HH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh----ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH---HH
Confidence 44555555444 33 68999999999765 4567888899999999999999999999999999999998 87
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy8368 282 DKEILKADLGNQQYQKETKARCMK 305 (372)
Q Consensus 282 ~~~l~~~~~~~~~~~~~~~~~~~~ 305 (372)
...+.-+....++...........
T Consensus 238 LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 238 LANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHH
Confidence 777777766665553333333333
No 187
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.54 E-value=0.0018 Score=63.20 Aligned_cols=124 Identities=12% Similarity=0.001 Sum_probs=93.6
Q ss_pred HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368 157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH 236 (372)
Q Consensus 157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~ 236 (372)
.....+..+...|+.+.|.....++++. +.. + .+..-. ..+..+++++++..++..++
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~----~-----------~l~~l~--~~l~~~~~~~al~~~e~~lk---- 322 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKR-QYD----E-----------RLVLLI--PRLKTNNPEQLEKVLRQQIK---- 322 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCC----H-----------HHHHHH--hhccCCChHHHHHHHHHHHh----
Confidence 3345578888889999999999888873 111 1 111111 22345999999999999998
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8368 237 FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMF 307 (372)
Q Consensus 237 ~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 307 (372)
.+|+++..++-+|.++...+++++|.++|+++++++|++. . ...+..+....++..+ ....|++.+
T Consensus 323 ~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~---~-~~~La~~~~~~g~~~~-A~~~~~~~l 388 (398)
T PRK10747 323 QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY---D-YAWLADALDRLHKPEE-AAAMRRDGL 388 (398)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH---H-HHHHHHHHHHcCCHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999999987 4 3467777777666543 345555443
No 188
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.53 E-value=0.00066 Score=63.23 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHHHHhhcCCCc
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEW-TSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~-e~A~~~~~~al~l~p~~~ 276 (372)
..+++.+|.|++.+|+|++|...+.+++. .+|+++.++.+++.+...+|+. +.+.+++.+....+|+++
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~----~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEEALE----KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHCC----C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 46788899999999999999999999997 9999999999999999999988 667788999889999998
No 189
>KOG3060|consensus
Probab=97.51 E-value=0.0049 Score=54.98 Aligned_cols=88 Identities=5% Similarity=-0.036 Sum_probs=49.5
Q ss_pred ccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368 217 NKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ 296 (372)
Q Consensus 217 l~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~ 296 (372)
+|+--+||+....-|+ .-+++..||..++..|...|+|+.|.-+|+.++-+.|-|+ ..+..++.+.--++-..
T Consensus 133 ~GK~l~aIk~ln~YL~----~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~---l~f~rlae~~Yt~gg~e 205 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD----KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP---LYFQRLAEVLYTQGGAE 205 (289)
T ss_pred cCCcHHHHHHHHHHHH----HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHHhhHH
Confidence 4444444444444444 3355556666666666666666666666666666666666 66666666654433222
Q ss_pred --HHHHHHHHhhccCCC
Q psy8368 297 --KETKARCMKMFSSSS 311 (372)
Q Consensus 297 --~~~~~~~~~~~~~~~ 311 (372)
.-.++.|.+.+....
T Consensus 206 N~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 206 NLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHHHHhCh
Confidence 233555555554444
No 190
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.51 E-value=0.0002 Score=43.28 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD 241 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~ 241 (372)
.++.++|.+|+++|+|++|+.+++++++ ++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~----l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE----LDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH----HSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH----HCcCC
Confidence 4688999999999999999999999998 88875
No 191
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.51 E-value=0.00061 Score=71.78 Aligned_cols=111 Identities=12% Similarity=0.000 Sum_probs=83.7
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHH-----HHHHHHHHHHHHHccCHHHHHHHHHH
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYL-----CRVYRNLMVCYNNNKQYKLTCDCASK 229 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~-----~~l~~Nla~~~~kl~~y~~Ai~~~~~ 229 (372)
...+.-.|-.++..+++.+|... .++..++..... .-...-...+. ..++..+|.||-++|++++|...+++
T Consensus 65 i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer 141 (906)
T PRK14720 65 ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWER 141 (906)
T ss_pred eehHHHHHHHHHhhcchhhhhhh--hhhhhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34556677888888888888777 666665443211 10000000000 13777899999999999999999999
Q ss_pred HHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q psy8368 230 ALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAA 273 (372)
Q Consensus 230 aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p 273 (372)
+|+ ++|+|+-++-++|..|... ++++|+.++.+|+...-
T Consensus 142 ~L~----~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 142 LVK----ADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHh----cCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 998 9999999999999999999 99999999999986543
No 192
>KOG0551|consensus
Probab=97.49 E-value=0.001 Score=61.35 Aligned_cols=83 Identities=19% Similarity=0.179 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc----cH
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK-DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS----VR 278 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~-~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~----~~ 278 (372)
+.-|---|+-|++-++|..|+..|++.|+.- .-||+ |+-.|.+||.|...+|+|-.|+.++.+|++++|.+. +.
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKK-CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4556677899999999999999999999722 23455 777899999999999999999999999999999997 33
Q ss_pred HHHHHHHHH
Q psy8368 279 AEIDKEILK 287 (372)
Q Consensus 279 ~~~~~~l~~ 287 (372)
+.+.-+|.+
T Consensus 160 Akc~~eLe~ 168 (390)
T KOG0551|consen 160 AKCLLELER 168 (390)
T ss_pred hHHHHHHHH
Confidence 344444444
No 193
>KOG1127|consensus
Probab=97.49 E-value=0.001 Score=69.04 Aligned_cols=94 Identities=16% Similarity=0.055 Sum_probs=77.0
Q ss_pred HHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy8368 212 VCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQE-WTSAIKHLKTARKLAAKDSVRAEIDKEILKADL 290 (372)
Q Consensus 212 ~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~-~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~ 290 (372)
.--+..++|++|++.|.++|+ .||+|..|++-+|.++..++. .++|.+.|..|.+++|+|. -+++.|..+.+
T Consensus 10 k~al~nk~YeealEqskkvLk----~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnl---LAWkGL~nLye 82 (1238)
T KOG1127|consen 10 KDALRNKEYEEALEQSKKVLK----EDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNL---LAWKGLGNLYE 82 (1238)
T ss_pred HHHHhhccHHHHHHHHHHHHh----cCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhh---HHHHHHHHHHH
Confidence 334556899999999999998 999999999999999999998 9999999999999999999 99999999988
Q ss_pred HHHHHH--HHHHHHHHhhccCCCC
Q psy8368 291 GNQQYQ--KETKARCMKMFSSSSS 312 (372)
Q Consensus 291 ~~~~~~--~~~~~~~~~~~~~~~~ 312 (372)
+...-. ...-..|++.+.....
T Consensus 83 ~~~dIl~ld~~~~~yq~~~l~le~ 106 (1238)
T KOG1127|consen 83 RYNDILDLDRAAKCYQRAVLILEN 106 (1238)
T ss_pred ccchhhhhhHhHHHHHHHHHhhhh
Confidence 733222 2233555555554443
No 194
>PRK15331 chaperone protein SicA; Provisional
Probab=97.47 E-value=0.00088 Score=56.17 Aligned_cols=96 Identities=7% Similarity=-0.146 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHH
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKE 284 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~ 284 (372)
...+..|--++..|+|++|...++-..- +||.|.+=++-+|.|+..+++|+.|+..|-.|..++++|+ ...-.
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~----~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp---~p~f~ 110 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCI----YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY---RPVFF 110 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC---Cccch
Confidence 4455678888899999999999998886 9999999999999999999999999999999999999999 77778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q psy8368 285 ILKADLGNQQYQKETKARCMKMFS 308 (372)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
.+.|...+++...+. ..+.-...
T Consensus 111 agqC~l~l~~~~~A~-~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKAR-QCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHH-HHHHHHHh
Confidence 888888777665443 34444444
No 195
>KOG0495|consensus
Probab=97.46 E-value=0.0021 Score=64.18 Aligned_cols=166 Identities=12% Similarity=0.034 Sum_probs=118.1
Q ss_pred HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCC---------ChHHHHHHHHHHH---------HHHHHHHHHHHHcc
Q psy8368 157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVT---------NYEDQMQLEEYLC---------RVYRNLMVCYNNNK 218 (372)
Q Consensus 157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~~~~~~~~~l~~---------~l~~Nla~~~~kl~ 218 (372)
-+...+..++..|+...|.....+|++..+++..- .+.+....+.++. .++..-+....-++
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhh
Confidence 44556777888899999999999988887653211 1112223333332 25555666666789
Q ss_pred CHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368 219 QYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKE 298 (372)
Q Consensus 219 ~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~ 298 (372)
+.++|+..|+++|+ .-|+..|.|..+|+++..+++.+.|...|...++..|... .++-.|.++..+..... +
T Consensus 666 ~~eeA~rllEe~lk----~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i---pLWllLakleEk~~~~~-r 737 (913)
T KOG0495|consen 666 NVEEALRLLEEALK----SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI---PLWLLLAKLEEKDGQLV-R 737 (913)
T ss_pred hHHHHHHHHHHHHH----hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc---hHHHHHHHHHHHhcchh-h
Confidence 99999999999998 7899999999999999999999999999999999999999 89999998887765332 3
Q ss_pred HHHHHHhhccC-----------------CCCCCcchHHHhhhhhhccCC
Q psy8368 299 TKARCMKMFSS-----------------SSSPSQHSNVVRIAYQEHEQV 330 (372)
Q Consensus 299 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~ 330 (372)
.+..+.+.--+ .+..+++....-+++|++|..
T Consensus 738 AR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 738 ARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 33333332111 122334555566778888764
No 196
>KOG1127|consensus
Probab=97.42 E-value=0.00096 Score=69.31 Aligned_cols=86 Identities=16% Similarity=0.111 Sum_probs=77.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q psy8368 207 YRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEIL 286 (372)
Q Consensus 207 ~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~ 286 (372)
+..+|..|++.+++..|+.+++-||+ .+|.+..+|.-+|.||...|+|.-|+..|.+|..++|.+. -.+...+
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR----~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~---y~~fk~A 637 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALR----TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK---YGRFKEA 637 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhc----CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH---HHHHHHH
Confidence 44488899999999999999999998 9999999999999999999999999999999999999998 7777777
Q ss_pred HHHHHHHHHHHHH
Q psy8368 287 KADLGNQQYQKET 299 (372)
Q Consensus 287 ~~~~~~~~~~~~~ 299 (372)
.+.....+|+...
T Consensus 638 ~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 638 VMECDNGKYKEAL 650 (1238)
T ss_pred HHHHHhhhHHHHH
Confidence 7777777776543
No 197
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.42 E-value=0.0039 Score=62.53 Aligned_cols=55 Identities=7% Similarity=0.033 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368 243 KLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETK 300 (372)
Q Consensus 243 ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~ 300 (372)
.++|-+|+.|..+|++++|++++++|+...|... +....-+++.+..++..++..
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~---ely~~KarilKh~G~~~~Aa~ 249 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLV---ELYMTKARILKHAGDLKEAAE 249 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHCCCHHHHHH
Confidence 4678899999999999999999999999999999 888888888888877766553
No 198
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.42 E-value=0.0022 Score=52.63 Aligned_cols=71 Identities=8% Similarity=-0.049 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
.-+++.|...++.|+|.+|+..++.+....+ ..|-...|.+.++-+|+..++|++|+..+++-++++|+++
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP-~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYP-FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 4577889999999999999999999987331 2344678999999999999999999999999999999998
No 199
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.40 E-value=0.0027 Score=61.42 Aligned_cols=107 Identities=13% Similarity=0.068 Sum_probs=92.2
Q ss_pred ccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHH
Q psy8368 168 DKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFV 247 (372)
Q Consensus 168 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r 247 (372)
.++++.|+..+.+.....+ .+..-+|.+++..++-.+|+....++|+ ..|.+...+.-
T Consensus 182 t~~~~~ai~lle~L~~~~p------------------ev~~~LA~v~l~~~~E~~AI~ll~~aL~----~~p~d~~LL~~ 239 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDP------------------EVAVLLARVYLLMNEEVEAIRLLNEALK----ENPQDSELLNL 239 (395)
T ss_pred cccHHHHHHHHHHHHhcCC------------------cHHHHHHHHHHhcCcHHHHHHHHHHHHH----hCCCCHHHHHH
Confidence 4567778877777655432 2233478899999999999999999997 88999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Q psy8368 248 WGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKET 299 (372)
Q Consensus 248 ~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~ 299 (372)
-|..++..++++.|+...++|..+.|++- ..+..|+++....++++.+-
T Consensus 240 Qa~fLl~k~~~~lAL~iAk~av~lsP~~f---~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 240 QAEFLLSKKKYELALEIAKKAVELSPSEF---ETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCchhH---HHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999 99999999999999887664
No 200
>KOG4555|consensus
Probab=97.39 E-value=0.0025 Score=51.12 Aligned_cols=64 Identities=16% Similarity=0.103 Sum_probs=58.1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 209 NLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 209 Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
.-|.+...-|+.+.|++.+.++|. +-|.++-+|.++|+++.-.|+.++|++++++|+++..+..
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~----l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t 111 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALC----LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT 111 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHH----hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc
Confidence 346677788999999999999997 8899999999999999999999999999999999976554
No 201
>KOG3785|consensus
Probab=97.35 E-value=0.0013 Score=61.27 Aligned_cols=104 Identities=11% Similarity=0.056 Sum_probs=75.3
Q ss_pred HHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchh
Q psy8368 164 NAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVK 243 (372)
Q Consensus 164 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~k 243 (372)
.++...+|..|+....-.+... .+++ .++-.=+|.|++.+|+|++|+..|+.+.+ .+..+.+
T Consensus 31 dfls~rDytGAislLefk~~~~-------~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~----~~~~~~e 92 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLD-------REEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMN----KDDAPAE 92 (557)
T ss_pred HHHhcccchhHHHHHHHhhccc-------hhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhc----cCCCCcc
Confidence 4555678888877766555321 1111 24445579999999999999999999986 6666889
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368 244 LFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN 292 (372)
Q Consensus 244 a~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~ 292 (372)
.+.++|.|++-+|.|.+|...-.+| |+++ -..+++-.+..++
T Consensus 93 l~vnLAcc~FyLg~Y~eA~~~~~ka----~k~p---L~~RLlfhlahkl 134 (557)
T KOG3785|consen 93 LGVNLACCKFYLGQYIEAKSIAEKA----PKTP---LCIRLLFHLAHKL 134 (557)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhC----CCCh---HHHHHHHHHHHHh
Confidence 9999999999999999998766655 6666 5555554444433
No 202
>PRK11906 transcriptional regulator; Provisional
Probab=97.35 E-value=0.0015 Score=63.27 Aligned_cols=69 Identities=10% Similarity=0.037 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
..++..+|.++.-.++++.|+..+++|+. ++|+.+.++|..|.++...|+.++|++.+++|++++|.-.
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~----L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKI----HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhh----cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 46788889988889999999999999997 9999999999999999999999999999999999999765
No 203
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.33 E-value=0.0048 Score=52.98 Aligned_cols=103 Identities=12% Similarity=0.012 Sum_probs=80.5
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS 235 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~ 235 (372)
......+..++..+++++|+...+.++..-.. ..+...+-.++|.+.+.+|.+++|+...+..-
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---- 153 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKD------------ENLKALAALRLARVQLQQKKADAALKTLDTIK---- 153 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchh------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc----
Confidence 34456788889999999999999999965311 12445677789999999999999998877554
Q ss_pred cCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 236 HFATK-DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 236 ~~~p~-~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
++. .....-.+|.++..+|+-.+|+..|.+|+..++++.
T Consensus 154 --~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 154 --EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred --cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 222 222355789999999999999999999999986655
No 204
>KOG1941|consensus
Probab=97.29 E-value=0.0025 Score=59.56 Aligned_cols=107 Identities=18% Similarity=0.149 Sum_probs=85.5
Q ss_pred HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368 157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH 236 (372)
Q Consensus 157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~ 236 (372)
.+...|+.+...+.|+++++.|+.|+++......+. +...++..++..|-.+++|++|+-+..+|+.+...
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~---------LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s 194 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAM---------LELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS 194 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCce---------eeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh
Confidence 344588999999999999999999999875542221 11467889999999999999999999999986544
Q ss_pred CCCC--ch----hHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368 237 FATK--DV----KLFFVWGKALIGLQEWTSAIKHLKTARKLA 272 (372)
Q Consensus 237 ~~p~--~~----ka~~r~a~a~~~l~~~e~A~~~~~~al~l~ 272 (372)
+.-+ +. -++|+++.++..+|+.-+|.++.+.|.++.
T Consensus 195 ~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 195 YGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred cCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 4322 22 278899999999999999999999998874
No 205
>KOG3364|consensus
Probab=97.26 E-value=0.0032 Score=50.73 Aligned_cols=84 Identities=6% Similarity=-0.005 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHccC---HHHHHHHHHHHHHhhccCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHH
Q psy8368 204 CRVYRNLMVCYNNNKQ---YKLTCDCASKALQFASHFATK-DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRA 279 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~---y~~Ai~~~~~aL~~~~~~~p~-~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~ 279 (372)
..+.+|+|.|+.+..+ -.+.|..++..++ .-.|. ....+|-+|..|+++++|+.|+.+++..++.+|+|.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~---~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~--- 105 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK---SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR--- 105 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh---hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH---
Confidence 4678899999987654 6777888888884 23444 666889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy8368 280 EIDKEILKADLGNQ 293 (372)
Q Consensus 280 ~~~~~l~~~~~~~~ 293 (372)
++..+-..+..++.
T Consensus 106 Qa~~Lk~~ied~it 119 (149)
T KOG3364|consen 106 QALELKETIEDKIT 119 (149)
T ss_pred HHHHHHHHHHHHHh
Confidence 77766666655544
No 206
>KOG4814|consensus
Probab=97.17 E-value=0.0048 Score=61.46 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=88.0
Q ss_pred HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368 157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH 236 (372)
Q Consensus 157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~ 236 (372)
-+-+.+..+|+..+|..|++.|...+.+++... ...-.+.+..|++.||+++.+.++|.+++.+|-+
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~---------~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~---- 422 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN---------YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE---- 422 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchh---------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh----
Confidence 445788899999999999999999999876541 1222378899999999999999999999999998
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368 237 FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA 272 (372)
Q Consensus 237 ~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~ 272 (372)
.||.++-..+-..++...-+.-++|+.++.+.+...
T Consensus 423 ~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 423 VDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred hccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 999999888888888888999999999998887653
No 207
>KOG0495|consensus
Probab=97.13 E-value=0.0093 Score=59.77 Aligned_cols=150 Identities=14% Similarity=0.080 Sum_probs=114.1
Q ss_pred HHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccC
Q psy8368 158 LGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHF 237 (372)
Q Consensus 158 ~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~ 237 (372)
+...++...-.++.++|+....+||+.++.. ..+|.-+|+.+-++++.+.|...|...++ .
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~f---------------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k----~ 714 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKSFPDF---------------HKLWLMLGQIEEQMENIEMAREAYLQGTK----K 714 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHhCCch---------------HHHHHHHhHHHHHHHHHHHHHHHHHhccc----c
Confidence 3445556666788899999999999988776 68999999999999999999999999998 8
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-----
Q psy8368 238 ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSS----- 312 (372)
Q Consensus 238 ~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 312 (372)
-|+.+-.|.-+++.-...|....|...|.++...+|+|. ..+-+.-++..+.+.... ......+.++.+..
T Consensus 715 cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~---~lwle~Ir~ElR~gn~~~-a~~lmakALQecp~sg~LW 790 (913)
T KOG0495|consen 715 CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA---LLWLESIRMELRAGNKEQ-AELLMAKALQECPSSGLLW 790 (913)
T ss_pred CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc---hhHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCccchhH
Confidence 899999999999999999999999999999999999999 666555555555444432 33344444444432
Q ss_pred --------CCcchHHHhhhhhhccCC
Q psy8368 313 --------PSQHSNVVRIAYQEHEQV 330 (372)
Q Consensus 313 --------~~~~~~~~~~~~~~~~~~ 330 (372)
.+++......+++.++..
T Consensus 791 aEaI~le~~~~rkTks~DALkkce~d 816 (913)
T KOG0495|consen 791 AEAIWLEPRPQRKTKSIDALKKCEHD 816 (913)
T ss_pred HHHHHhccCcccchHHHHHHHhccCC
Confidence 223444444566665544
No 208
>KOG4507|consensus
Probab=97.07 E-value=0.0025 Score=62.86 Aligned_cols=103 Identities=18% Similarity=0.118 Sum_probs=88.0
Q ss_pred hccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHH
Q psy8368 167 NDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFF 246 (372)
Q Consensus 167 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~ 246 (372)
..|+...|+.+...|+...+... -.-..|+|+.+++-+....|-....++|. +....+-.+|
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~--------------~v~~v~la~~~~~~~~~~da~~~l~q~l~----~~~sepl~~~ 680 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQ--------------DVPLVNLANLLIHYGLHLDATKLLLQALA----INSSEPLTFL 680 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhh--------------cccHHHHHHHHHHhhhhccHHHHHHHHHh----hcccCchHHH
Confidence 57888899999999886643321 23467999999999999999999999997 7677778899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy8368 247 VWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADL 290 (372)
Q Consensus 247 r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~ 290 (372)
-.|.+|+.+.+.+.|++.|+.|++++|++. .+...|..+.-
T Consensus 681 ~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~---~~~~~l~~i~c 721 (886)
T KOG4507|consen 681 SLGNAYLALKNISGALEAFRQALKLTTKCP---ECENSLKLIRC 721 (886)
T ss_pred hcchhHHHHhhhHHHHHHHHHHHhcCCCCh---hhHHHHHHHHH
Confidence 999999999999999999999999999999 88888877654
No 209
>KOG1586|consensus
Probab=97.07 E-value=0.03 Score=49.53 Aligned_cols=106 Identities=11% Similarity=0.092 Sum_probs=79.7
Q ss_pred HhhHHHHhc-cCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCC
Q psy8368 160 ASGKNAFND-KNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFA 238 (372)
Q Consensus 160 ~~Gn~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~ 238 (372)
+.|..|-.. .++.+|+.+|.+|-.++... +....-..|+...|..-..+++|.+||..|+++.+. .++
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~--s~~ 186 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGE---------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARS--SLD 186 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcch---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcc
Confidence 444444443 67888888998888887543 223334578888888888999999999999998751 122
Q ss_pred CC----chhHH-HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 239 TK----DVKLF-FVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 239 p~----~~ka~-~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
.+ .+|-| ++.|.||+-..+.-.|...+++-..++|...
T Consensus 187 n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 187 NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 22 35555 4778999999999999999999999999876
No 210
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.06 E-value=0.0068 Score=60.43 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=83.4
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA 234 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~ 234 (372)
+--+...|..+..+|+.++|+..|++|+.. ..+...+...++..+|.|++-+.+|.+|..++...++
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~-----------q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~-- 333 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIES-----------QSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK-- 333 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccc-----------hhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh--
Confidence 344667899999999999999999999842 1233445578899999999999999999999999985
Q ss_pred ccCCCCchhHHH--HHHHHHHhcCCH-------HHHHHHHHHHHhhcC
Q psy8368 235 SHFATKDVKLFF--VWGKALIGLQEW-------TSAIKHLKTARKLAA 273 (372)
Q Consensus 235 ~~~~p~~~ka~~--r~a~a~~~l~~~-------e~A~~~~~~al~l~p 273 (372)
..+..+|+| -.|.|+..+++. ++|...|.++-.+-.
T Consensus 334 ---~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 334 ---ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred ---ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 455677766 468889999999 888888888876654
No 211
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.06 E-value=0.043 Score=50.84 Aligned_cols=121 Identities=16% Similarity=0.053 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhhHHHHhcc-CHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy8368 151 VLKRAQELGASGKNAFNDK-NIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASK 229 (372)
Q Consensus 151 ~~~~~~~~k~~Gn~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~ 229 (372)
....+..+.+.|..+++++ +|..|+...++|+++++.. ...+.......+++..++..++.+|+..+.++.... |..
T Consensus 31 ~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~-~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~ 108 (278)
T PF08631_consen 31 AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKP-GKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALN 108 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhh-hhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHH
Confidence 4578899999999999999 9999999999999998652 111122345567888999999999999998765444 666
Q ss_pred HHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q psy8368 230 ALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAA 273 (372)
Q Consensus 230 aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p 273 (372)
+++.....-|+.+-.++-.=.+....++.+++.+.+.+.+.--+
T Consensus 109 ~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 109 ALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 77655445676666665555566668999999999999987654
No 212
>KOG2796|consensus
Probab=97.05 E-value=0.019 Score=51.61 Aligned_cols=133 Identities=11% Similarity=0.052 Sum_probs=97.8
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccC------------CChHH--H----------HHHHH--HHHHHH
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQV------------TNYED--Q----------MQLEE--YLCRVY 207 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~------------~~~~~--~----------~~~~~--l~~~l~ 207 (372)
....+.-..+.+...|.|.-.+..|.+.++..+...+ ..+.. . ..+.. ....++
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 3445666788888899999999999998886532110 00100 0 01111 124577
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q psy8368 208 RNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILK 287 (372)
Q Consensus 208 ~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~ 287 (372)
-|.+..|.-.++|..|...+++++. .||.++.+-.+.|.|++-+|+..+|++.+..++...|.......+.-.|..
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~----~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~t 331 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILR----MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTT 331 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccc----cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHH
Confidence 8889999999999999999999997 999999999999999999999999999999999999987622234344444
Q ss_pred HHH
Q psy8368 288 ADL 290 (372)
Q Consensus 288 ~~~ 290 (372)
+..
T Consensus 332 myE 334 (366)
T KOG2796|consen 332 MYE 334 (366)
T ss_pred HHH
Confidence 433
No 213
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.16 Score=46.61 Aligned_cols=181 Identities=15% Similarity=0.100 Sum_probs=114.8
Q ss_pred CeEEEcCCCc------cchHHHHHhccCCCCcEEEEEecCCCccCCCCC--CCCCCCCCcEEEEEEEEeeecCccccccc
Q psy8368 60 PERFQLGSSG------LIPAFEYAILSMQKGEKSDFFASYELCFGALGC--PPRIPAKADLLFEVHLINFSIDPQVVRSS 131 (372)
Q Consensus 60 ~~~~~~g~~~------~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g~--~~~ip~~~~~~~~iel~~~~~~~~~~~~~ 131 (372)
|+-+-++..- +.|-|+... .--.|....+++.++..-.-.+. ...|| .+.-|. ++.+++.|
T Consensus 45 PVlV~fWap~~~~c~qL~p~Lekla-~~~~G~f~LakvN~D~~p~vAaqfgiqsIP---------tV~af~-dGqpVdgF 113 (304)
T COG3118 45 PVLVDFWAPWCGPCKQLTPTLEKLA-AEYKGKFKLAKVNCDAEPMVAAQFGVQSIP---------TVYAFK-DGQPVDGF 113 (304)
T ss_pred CeEEEecCCCCchHHHHHHHHHHHH-HHhCCceEEEEecCCcchhHHHHhCcCcCC---------eEEEee-CCcCcccc
Confidence 7887777542 234344333 33468888888876643221111 11354 455566 66666654
Q ss_pred cccccccccCccCchhHHHHHH-----HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHH
Q psy8368 132 ADIESDFIDSQVEEPAFAKVLK-----RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRV 206 (372)
Q Consensus 132 ~~~~~~~~~~~~e~~~~~~~~~-----~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l 206 (372)
. +.-....+.+.+. ........+..+...+++..|...|..++...+.. ..+
T Consensus 114 ~--------G~qPesqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~---------------~~~ 170 (304)
T COG3118 114 Q--------GAQPESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN---------------SEA 170 (304)
T ss_pred C--------CCCcHHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc---------------chH
Confidence 3 2211112222222 23446678889999999999999999999997665 356
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHH---------------HHhh---------------ccCCCCchhHHHHHHHHHHhcC
Q psy8368 207 YRNLMVCYNNNKQYKLTCDCASKA---------------LQFA---------------SHFATKDVKLFFVWGKALIGLQ 256 (372)
Q Consensus 207 ~~Nla~~~~kl~~y~~Ai~~~~~a---------------L~~~---------------~~~~p~~~ka~~r~a~a~~~l~ 256 (372)
..-+|.||+..|+.+.|...+... |+.. -..||++..+-+.+|..|...|
T Consensus 171 ~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g 250 (304)
T COG3118 171 KLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVG 250 (304)
T ss_pred HHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 667888888888876655443320 1100 0247888889999999999999
Q ss_pred CHHHHHHHHHHHHhhcCC
Q psy8368 257 EWTSAIKHLKTARKLAAK 274 (372)
Q Consensus 257 ~~e~A~~~~~~al~l~p~ 274 (372)
++++|++.+-..++.+-+
T Consensus 251 ~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 251 RNEAALEHLLALLRRDRG 268 (304)
T ss_pred CHHHHHHHHHHHHHhccc
Confidence 999998888888887654
No 214
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.98 E-value=0.0013 Score=39.34 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q psy8368 244 LFFVWGKALIGLQEWTSAIKHLKTARKLAAKD 275 (372)
Q Consensus 244 a~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~ 275 (372)
|+|++|.+|..+|++++|+..|++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 67788888888888888888888888777763
No 215
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.97 E-value=0.0059 Score=51.85 Aligned_cols=69 Identities=19% Similarity=0.146 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368 219 QYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQE----------WTSAIKHLKTARKLAAKDSVRAEIDKEILKA 288 (372)
Q Consensus 219 ~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~----------~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~ 288 (372)
-|+.|++.++.+.. .+|.++.+++|.|.|++.|.+ +++|+.-|+.|+.++|+.. .+.-.++.+
T Consensus 6 ~FE~ark~aea~y~----~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h---dAlw~lGnA 78 (186)
T PF06552_consen 6 FFEHARKKAEAAYA----KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH---DALWCLGNA 78 (186)
T ss_dssp HHHHHHHHHHHHHH----H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH---HHHHHHHHH
Confidence 47889999999886 899999999999999998854 4778999999999999998 888888777
Q ss_pred HHHHHH
Q psy8368 289 DLGNQQ 294 (372)
Q Consensus 289 ~~~~~~ 294 (372)
...+..
T Consensus 79 ~ts~A~ 84 (186)
T PF06552_consen 79 YTSLAF 84 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 655443
No 216
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.94 E-value=0.0031 Score=42.57 Aligned_cols=41 Identities=7% Similarity=-0.001 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHH
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWG 249 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a 249 (372)
.+++.+|..++++|+|.+|..+|+.+|+ .+|+|..|.--..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~----~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLE----IEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH----HTTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHh----hCCCcHHHHHHHH
Confidence 4678899999999999999999999998 9999988765443
No 217
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.93 E-value=0.0013 Score=39.71 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD 241 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~ 241 (372)
.++.++|.+|.++|++++|+.+++++++ ++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~----~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE----LNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH----HHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCC
Confidence 4688999999999999999999999998 76653
No 218
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.88 E-value=0.0033 Score=54.85 Aligned_cols=71 Identities=15% Similarity=0.104 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 202 YLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 202 l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
.++.+++-+|..|-.+|-+.-|..+++++|. +.|+-+.++.-+|.-+..-|+|+.|.+.|..++++||.+.
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLa----i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALA----IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhh----cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence 3478899999999999999999999999996 9999999999999999999999999999999999999876
No 219
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.84 E-value=0.0018 Score=37.45 Aligned_cols=31 Identities=19% Similarity=0.390 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q psy8368 244 LFFVWGKALIGLQEWTSAIKHLKTARKLAAK 274 (372)
Q Consensus 244 a~~r~a~a~~~l~~~e~A~~~~~~al~l~p~ 274 (372)
+++++|.++..+++++.|+..|.++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666666554
No 220
>KOG4340|consensus
Probab=96.84 E-value=0.0049 Score=56.23 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=77.4
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~ 233 (372)
.+....+.|-.+|+.|+|+.|+..|+.|+++-.+. .-+-+|+|.|+++.++|..|+++..++++.
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq---------------pllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ---------------PLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCC---------------chhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 35667788999999999999999999999986655 367789999999999999999999998863
Q ss_pred hccCCCC----------------c---------hhHHHHHHHHHHhcCCHHHHHHHHH
Q psy8368 234 ASHFATK----------------D---------VKLFFVWGKALIGLQEWTSAIKHLK 266 (372)
Q Consensus 234 ~~~~~p~----------------~---------~ka~~r~a~a~~~l~~~e~A~~~~~ 266 (372)
--...|. | +.|+.-.+.+++..++++.|.+.+.
T Consensus 208 G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 208 GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 2111111 1 3366667888999999999887664
No 221
>KOG0376|consensus
Probab=96.84 E-value=0.0027 Score=61.40 Aligned_cols=82 Identities=15% Similarity=0.084 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc----cHHH
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS----VRAE 280 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~----~~~~ 280 (372)
..+-|-|..+++-+.|+.|+..|.+||+ ++|+++.-+-+|+.+|.+.++|..|+.++.+|++++|... +++.
T Consensus 5 ~e~k~ean~~l~~~~fd~avdlysKaI~----ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~ 80 (476)
T KOG0376|consen 5 EELKNEANEALKDKVFDVAVDLYSKAIE----LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGT 80 (476)
T ss_pred hhhhhHHhhhcccchHHHHHHHHHHHHh----cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccH
Confidence 3455677888999999999999999998 9999999999999999999999999999999999999875 3334
Q ss_pred HHHHHHHHHH
Q psy8368 281 IDKEILKADL 290 (372)
Q Consensus 281 ~~~~l~~~~~ 290 (372)
+...+.+-++
T Consensus 81 a~m~l~~~~~ 90 (476)
T KOG0376|consen 81 AVMALGEFKK 90 (476)
T ss_pred HHHhHHHHHH
Confidence 4444444333
No 222
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.82 E-value=0.073 Score=50.48 Aligned_cols=126 Identities=10% Similarity=0.114 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy8368 150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASK 229 (372)
Q Consensus 150 ~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~ 229 (372)
.+..++......|-.-+-.|+|.+|.....++-+.-+.. ..+|.--|.+-..+|+++.|-.+..+
T Consensus 79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p---------------~l~~l~aA~AA~qrgd~~~an~yL~e 143 (400)
T COG3071 79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP---------------VLAYLLAAEAAQQRGDEDRANRYLAE 143 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch---------------HHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 345678888889999999999999999988866543222 56677777888889999999999999
Q ss_pred HHHhhccC-CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHH
Q psy8368 230 ALQFASHF-ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQK 297 (372)
Q Consensus 230 aL~~~~~~-~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~ 297 (372)
+-+ . +.++.-.+..++......|++..|...+..+++..|.++ .+.+....+....+.+..
T Consensus 144 aae----~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~---~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 144 AAE----LAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHP---EVLRLALRAYIRLGAWQA 205 (400)
T ss_pred Hhc----cCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCCh---HHHHHHHHHHHHhccHHH
Confidence 986 4 334666788889999999999999999999999999999 888877777776666543
No 223
>KOG3785|consensus
Probab=96.79 E-value=0.0056 Score=57.10 Aligned_cols=115 Identities=12% Similarity=-0.005 Sum_probs=62.4
Q ss_pred hhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh------
Q psy8368 161 SGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA------ 234 (372)
Q Consensus 161 ~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~------ 234 (372)
.|-.+|..|+|++|+..|+-+....... ..+..|+|-|++-+|.|.+|.....++-+..
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~---------------~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLl 127 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAP---------------AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLL 127 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCC---------------cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 5778899999999999998877632111 3455566666666666666655444332100
Q ss_pred ----ccCC------------CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368 235 ----SHFA------------TKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ 293 (372)
Q Consensus 235 ----~~~~------------p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~ 293 (372)
-.++ .+...-.+.+|.+++..-.|.+|++.|.++|.-+|..- .+.-.++.|.-++.
T Consensus 128 fhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~---alNVy~ALCyyKlD 199 (557)
T KOG3785|consen 128 FHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI---ALNVYMALCYYKLD 199 (557)
T ss_pred HHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh---hhHHHHHHHHHhcc
Confidence 0000 00111233344444455556666666666666555555 45555555544443
No 224
>KOG0545|consensus
Probab=96.78 E-value=0.004 Score=55.25 Aligned_cols=73 Identities=11% Similarity=0.090 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccC----CCC----------chhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHF----ATK----------DVKLFFVWGKALIGLQEWTSAIKHLKTAR 269 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~----~p~----------~~ka~~r~a~a~~~l~~~e~A~~~~~~al 269 (372)
+.++...|+-++++|+|.+|...|..|+-+++.+ .|. +.-.+.+.++|++..++|-++++....+|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 4667788999999999999999999998654322 233 23368899999999999999999999999
Q ss_pred hhcCCCc
Q psy8368 270 KLAAKDS 276 (372)
Q Consensus 270 ~l~p~~~ 276 (372)
..+|.|.
T Consensus 258 ~~~~~nv 264 (329)
T KOG0545|consen 258 RHHPGNV 264 (329)
T ss_pred hcCCchH
Confidence 9999998
No 225
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.73 E-value=0.003 Score=38.90 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8368 245 FFVWGKALIGLQEWTSAIKHLKTAR 269 (372)
Q Consensus 245 ~~r~a~a~~~l~~~e~A~~~~~~al 269 (372)
|.++|.+|..+|+|++|+.+|+++|
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555544
No 226
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.72 E-value=0.021 Score=49.12 Aligned_cols=106 Identities=9% Similarity=-0.006 Sum_probs=81.3
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~ 233 (372)
.-..+...|+-|++.|+++.|++.|.++..++... ...+.++.++-.+.+-.++|..+..+..++-..
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~------------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP------------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34677899999999999999999999988875332 123677888888999999999999999999875
Q ss_pred hccCCCCchhHHH--HHHHHHHhcCCHHHHHHHHHHHHhh
Q psy8368 234 ASHFATKDVKLFF--VWGKALIGLQEWTSAIKHLKTARKL 271 (372)
Q Consensus 234 ~~~~~p~~~ka~~--r~a~a~~~l~~~e~A~~~~~~al~l 271 (372)
.+..++...+..+ -.|.+++..++|..|-..|..+..-
T Consensus 103 ~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 103 IEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 5444433444433 3467778889999998888777543
No 227
>KOG2376|consensus
Probab=96.70 E-value=0.058 Score=53.60 Aligned_cols=94 Identities=12% Similarity=0.102 Sum_probs=64.8
Q ss_pred HHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Q psy8368 159 GASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF----- 233 (372)
Q Consensus 159 k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~----- 233 (372)
++++-.+|+.+..++|+..++ .++-.+ ..+..-.|+.++++++|++|+..|+..++-
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~-~~~~~~-----------------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK-GLDRLD-----------------DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh-cccccc-----------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 577777888888888888776 221110 234555788888888888888888877430
Q ss_pred ----------------------hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368 234 ----------------------ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARK 270 (372)
Q Consensus 234 ----------------------~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~ 270 (372)
.+....+...-+|+.|.++...|+|.+|++.+.+|++
T Consensus 145 d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 145 DEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 0000112455788999999999999999999999843
No 228
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.70 E-value=0.0017 Score=39.53 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=29.7
Q ss_pred HHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Q psy8368 177 RYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCD 225 (372)
Q Consensus 177 ~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~ 225 (372)
+|++||++.|.. ...|+|+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n---------------~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNN---------------AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCC---------------HHHHHHHHHHHHHCcCHHhhcC
Confidence 488999997766 7899999999999999999863
No 229
>KOG3081|consensus
Probab=96.69 E-value=0.041 Score=49.64 Aligned_cols=149 Identities=12% Similarity=0.013 Sum_probs=98.6
Q ss_pred HHHHhhHHHHhccCHHHHHHHHHHHHHhhhh-------ccCC-ChHHHHHHHHHH----HHHHHHHHHHHHHc----cCH
Q psy8368 157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLIN-------TQVT-NYEDQMQLEEYL----CRVYRNLMVCYNNN----KQY 220 (372)
Q Consensus 157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~-------~~~~-~~~~~~~~~~l~----~~l~~Nla~~~~kl----~~y 220 (372)
.+..-|..+...++|++|+....+...+--. .... -+-...+++.+. -..++.+|.++.++ +.+
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhh
Confidence 4445677788889999998876552211000 0000 000011111111 13445577777664 458
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368 221 KLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETK 300 (372)
Q Consensus 221 ~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~ 300 (372)
.+|.-.|+.--. .-|..+..+.-.|.|++.+++|++|...++.||..+++++ +....+--+-...+.......
T Consensus 190 qdAfyifeE~s~----k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp---etL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 190 QDAFYIFEELSE----KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP---ETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred hhHHHHHHHHhc----ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH---HHHHHHHHHHHHhCCChHHHH
Confidence 888888888775 5677888999999999999999999999999999999999 888888877777766655555
Q ss_pred HHHHhhccCCCC
Q psy8368 301 ARCMKMFSSSSS 312 (372)
Q Consensus 301 ~~~~~~~~~~~~ 312 (372)
+....++..-+.
T Consensus 263 r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 263 RNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHhcCCc
Confidence 555555544443
No 230
>KOG2053|consensus
Probab=96.66 E-value=0.042 Score=57.01 Aligned_cols=114 Identities=12% Similarity=0.053 Sum_probs=90.3
Q ss_pred HHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchh
Q psy8368 164 NAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVK 243 (372)
Q Consensus 164 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~k 243 (372)
.....++|.+|+....+.++..|.. ..+..--|..++++|++++|. -|-+++. -..+++.-
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~---------------~~a~vLkaLsl~r~gk~~ea~-~~Le~~~---~~~~~D~~ 78 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNA---------------LYAKVLKALSLFRLGKGDEAL-KLLEALY---GLKGTDDL 78 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHHhcCchhHH-HHHhhhc---cCCCCchH
Confidence 3455688999999999998887664 234445678899999999999 6666665 35566777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368 244 LFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETK 300 (372)
Q Consensus 244 a~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~ 300 (372)
.+--+-.||..++.+++|...|+++...+|+ . +....+=.+.-+.+.|++.++
T Consensus 79 tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-e---ell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 79 TLQFLQNVYRDLGKLDEAVHLYERANQKYPS-E---ELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-H---HHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999 6 677777777777777766554
No 231
>KOG1941|consensus
Probab=96.58 E-value=0.037 Score=51.98 Aligned_cols=144 Identities=14% Similarity=0.236 Sum_probs=97.6
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc--------CCC-------hH-------------HHHHHHHHHHH
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ--------VTN-------YE-------------DQMQLEEYLCR 205 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~--------~~~-------~~-------------~~~~~~~l~~~ 205 (372)
++....+.|..++...++.+|+..+.+.|..++..- .++ -+ ...+-...+..
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888899999988888876653321 000 00 01122234467
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhccCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc---cHHHH
Q psy8368 206 VYRNLMVCYNNNKQYKLTCDCASKALQFASHFA-TKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS---VRAEI 281 (372)
Q Consensus 206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~-p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~---~~~~~ 281 (372)
.+.|++..+-++.+|.+++.+|.-.+....+.. ..-..++.-+|.||..++.|+.+++.|++|+++.-++. .--.+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 899999999999999999999999986322111 12345788899999999999999999999999866543 00012
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8368 282 DKEILKADLGNQQYQK 297 (372)
Q Consensus 282 ~~~l~~~~~~~~~~~~ 297 (372)
--.|..+...++++.+
T Consensus 165 cv~Lgslf~~l~D~~K 180 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEK 180 (518)
T ss_pred hhhHHHHHHHHHhhhH
Confidence 3344455555555544
No 232
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.56 E-value=0.0042 Score=38.24 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 206 VYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
++.|+|.+|.++|+|++|+.+|+++|.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478999999999999999999999775
No 233
>KOG2396|consensus
Probab=96.55 E-value=0.11 Score=50.83 Aligned_cols=99 Identities=14% Similarity=0.121 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHH
Q psy8368 171 IVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGK 250 (372)
Q Consensus 171 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~ 250 (372)
...-+..|+.|+.-++.. ..++.+......+.+.|.+.-..|.++|. .+|+++..|.-.|.
T Consensus 87 ~~rIv~lyr~at~rf~~D---------------~~lW~~yi~f~kk~~~~~~v~ki~~~~l~----~Hp~~~dLWI~aA~ 147 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGD---------------VKLWLSYIAFCKKKKTYGEVKKIFAAMLA----KHPNNPDLWIYAAK 147 (568)
T ss_pred HHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHhcchhHHHHHHHHHHH----hCCCCchhHHhhhh
Confidence 445566788888877664 68888888888888889999999999997 99999999999988
Q ss_pred HHHhcCC-HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368 251 ALIGLQE-WTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG 291 (372)
Q Consensus 251 a~~~l~~-~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~ 291 (372)
=.+.-+. .+.|...|.++|+.+|+++ .++.+.-++.-.
T Consensus 148 wefe~n~ni~saRalflrgLR~npdsp---~Lw~eyfrmEL~ 186 (568)
T KOG2396|consen 148 WEFEINLNIESARALFLRGLRFNPDSP---KLWKEYFRMELM 186 (568)
T ss_pred hHHhhccchHHHHHHHHHHhhcCCCCh---HHHHHHHHHHHH
Confidence 8777765 9999999999999999999 777666555433
No 234
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.45 E-value=0.071 Score=45.31 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=76.2
Q ss_pred HHHhccCHHHHHHHHHHHHHhhhh-ccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC-c
Q psy8368 164 NAFNDKNIVSAVRRYRDAVKLLIN-TQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK-D 241 (372)
Q Consensus 164 ~~~~~g~~~~A~~~y~~al~~~~~-~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~-~ 241 (372)
.++..|++..|...|.+++...+. . .....+.+++..+...+++..|+..+.+++. ..+. .
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~ 201 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELN-------------ELAEALLALGALLEALGRYEEALELLEKALK----LNPDDD 201 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcc-------------chHHHHHHhhhHHHHhcCHHHHHHHHHHHHh----hCcccc
Confidence 888899999999999999884432 1 0134555556668888899999999999987 6677 6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 242 VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 242 ~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
..++..++.++...+.+..|+..+..++...|...
T Consensus 202 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 236 (291)
T COG0457 202 AEALLNLGLLYLKLGKYEEALEYYEKALELDPDNA 236 (291)
T ss_pred hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccH
Confidence 88889999999999999999999999999988743
No 235
>KOG3824|consensus
Probab=96.41 E-value=0.028 Score=51.60 Aligned_cols=77 Identities=12% Similarity=0.013 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK 283 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~ 283 (372)
+.+-.|.|.-..+.|+.++|...+..||. ++|+++.++.+.|.....-++.-+|-.+|-+||.++|.|. ++.-
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAla----laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns---eALv 188 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALA----LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS---EALV 188 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHh----cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch---HHHh
Confidence 34556778888899999999999999997 9999999999999999999999999999999999999998 5554
Q ss_pred HHHH
Q psy8368 284 EILK 287 (372)
Q Consensus 284 ~l~~ 287 (372)
.-.+
T Consensus 189 nR~R 192 (472)
T KOG3824|consen 189 NRAR 192 (472)
T ss_pred hhhc
Confidence 4333
No 236
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.40 E-value=0.18 Score=42.65 Aligned_cols=116 Identities=18% Similarity=0.090 Sum_probs=72.0
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhh
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMV-CYNNNKQYKLTCDCASKALQFA 234 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~-~~~kl~~y~~Ai~~~~~aL~~~ 234 (372)
..+...|......+.+..|+..+..++...... .......+. ++...+++..|+..+.+++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-- 158 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDPDP---------------DLAEALLALGALYELGDYEEALELYEKALE-- 158 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc---------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--
Confidence 344445555555555555555555555443221 111222223 78888888888888888875
Q ss_pred ccCCC---CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-CccHHHHHHHHHHHHHHHH
Q psy8368 235 SHFAT---KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK-DSVRAEIDKEILKADLGNQ 293 (372)
Q Consensus 235 ~~~~p---~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~-~~~~~~~~~~l~~~~~~~~ 293 (372)
.+| .....++.++..+...+++..|+..+.+++...+. .. .....+..+.....
T Consensus 159 --~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 216 (291)
T COG0457 159 --LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDA---EALLNLGLLYLKLG 216 (291)
T ss_pred --cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccch---HHHHHhhHHHHHcc
Confidence 555 45666677777777888888888888888888888 45 55555555544443
No 237
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.037 Score=50.23 Aligned_cols=85 Identities=21% Similarity=0.247 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHH
Q psy8368 201 EYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAE 280 (372)
Q Consensus 201 ~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~ 280 (372)
.....+..|+=..|+..++|..|..+..+.|. ++|.++..+--+|.+|..+|.+.-|++++...++..|+++....
T Consensus 178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~----l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 178 EILSRLLRNLKAALLRELQWELALRVAERLLD----LNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHh----hCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 34466788888999999999999999999997 99999999999999999999999999999999999999985555
Q ss_pred HHHHHHHHH
Q psy8368 281 IDKEILKAD 289 (372)
Q Consensus 281 ~~~~l~~~~ 289 (372)
++..+..+.
T Consensus 254 ir~~l~~l~ 262 (269)
T COG2912 254 IRAQLLELR 262 (269)
T ss_pred HHHHHHHHH
Confidence 666655554
No 238
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.33 E-value=0.058 Score=47.88 Aligned_cols=104 Identities=10% Similarity=0.096 Sum_probs=74.5
Q ss_pred hHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccC-------HHHHHHHHHHHHHhh
Q psy8368 162 GKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQ-------YKLTCDCASKALQFA 234 (372)
Q Consensus 162 Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~-------y~~Ai~~~~~aL~~~ 234 (372)
+..+-....+..|+..|.-|+-.......... ..+.++..+|.+|..+++ +..|+..+.+|+..-
T Consensus 84 ~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s--------~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e 155 (214)
T PF09986_consen 84 PRDFSGERTLEEAIESYKLALLCAQIKKEKPS--------KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE 155 (214)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHhCCCHH--------HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 33666677899999999999876543221111 347889999999999998 445555555555411
Q ss_pred cc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q psy8368 235 SH--FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAA 273 (372)
Q Consensus 235 ~~--~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p 273 (372)
.. ..-+....+|-+|..+..+|++++|+..|.+++..--
T Consensus 156 ~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 156 DFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred cCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 00 0113467899999999999999999999999997643
No 239
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.33 E-value=0.0088 Score=37.62 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccC
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHF 237 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~ 237 (372)
+.+++|+|.+|..+|+|.+|+.++++++.+...+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 4678899999999999999999999999755443
No 240
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.29 E-value=0.03 Score=50.29 Aligned_cols=72 Identities=10% Similarity=-0.034 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
...++|-|+..++.|+|.+|+..++.+.... ...|-..++.+-++.|+++.++|++|+..+++-+++.|+++
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence 5678899999999999999999999998622 13344788999999999999999999999999999999988
No 241
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.28 E-value=0.12 Score=56.04 Aligned_cols=70 Identities=9% Similarity=-0.026 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC----CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT----KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAA 273 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p----~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p 273 (372)
..++.++|.+++..|++..|...+.+++.+...... ...-.+..+|.++...|++++|...+.+++.+..
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 346678899999999999999999999875543321 1233455778889999999999999999988744
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.23 E-value=0.058 Score=52.78 Aligned_cols=159 Identities=15% Similarity=0.059 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHHhhhhccCCCh----------HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368 170 NIVSAVRRYRDAVKLLINTQVTNY----------EDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT 239 (372)
Q Consensus 170 ~~~~A~~~y~~al~~~~~~~~~~~----------~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p 239 (372)
-..+|...|++|++.-+..-.... .....-.+...-+...+|.|..++|+.++|++.+...++ ..|
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlk----e~p 290 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLK----EFP 290 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHh----hCC
Confidence 368889999999887544221110 000011122355677899999999999999999999997 444
Q ss_pred C--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcc
Q psy8368 240 K--DVKLFFVWGKALIGLQEWTSAIKHLKTARKL-AAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSSPSQH 316 (372)
Q Consensus 240 ~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l-~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (372)
. +...++++..+++.++.|.++...+.+--.+ -|+.+ .+-..-+.++-+.-..+...-...++-+.... -.+
T Consensus 291 ~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSA---ti~YTaALLkaRav~d~fs~e~a~rRGls~ae--~~a 365 (539)
T PF04184_consen 291 NLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSA---TICYTAALLKARAVGDKFSPEAASRRGLSPAE--MNA 365 (539)
T ss_pred ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchH---HHHHHHHHHHHHhhccccCchhhhhcCCChhH--HHH
Confidence 4 6779999999999999999999888886433 24444 44433333322111000000000111111000 124
Q ss_pred hHHHhhhhhhccCCCcccccc
Q psy8368 317 SNVVRIAYQEHEQVRPATLQE 337 (372)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~ 337 (372)
...++++..-+|.+++.-++.
T Consensus 366 veAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 366 VEAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred HHHHHHHHHhCCCCchhhhcc
Confidence 566778888888887644443
No 243
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.20 E-value=0.043 Score=41.53 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC--ccHHHHHHHHHHHHHHHHHH
Q psy8368 223 TCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD--SVRAEIDKEILKADLGNQQY 295 (372)
Q Consensus 223 Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~--~~~~~~~~~l~~~~~~~~~~ 295 (372)
.+..+++.+. .+|++..+.|.+|.++...|++++|++.+..+++.+++. . .+++.+-.+-..++..
T Consensus 7 ~~~al~~~~a----~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~---~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALA----ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDD---AARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHH----HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCC---HHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHH----cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccccc---HHHHHHHHHHHHcCCC
Confidence 3566777886 899999999999999999999999999999999999866 5 5666666666555543
No 244
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.18 E-value=0.14 Score=43.90 Aligned_cols=104 Identities=12% Similarity=0.133 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK 283 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~ 283 (372)
+.-++.+|.....+|+|.+|..+|.+++. -+-.++...++-++++.+.++++..|...+++..+-+|... ..+-.-
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qals---G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r-~pd~~L 164 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALS---GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR-SPDGHL 164 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhc---cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC-CCCchH
Confidence 35677899999999999999999999996 34556788899999999999999999999999999998643 113334
Q ss_pred HHHHHHHHHHHHHHH---------------HHHHHHhhccCCC
Q psy8368 284 EILKADLGNQQYQKE---------------TKARCMKMFSSSS 311 (372)
Q Consensus 284 ~l~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 311 (372)
.+++.....+.+... .+..|..|+.+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qg 207 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQG 207 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 444444444443322 2456666666555
No 245
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.18 E-value=0.051 Score=58.78 Aligned_cols=103 Identities=16% Similarity=-0.012 Sum_probs=80.6
Q ss_pred HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368 160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT 239 (372)
Q Consensus 160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p 239 (372)
..|..++..|++..|...+.+++...+.. +. .......+++|.++...|++++|...+.+++.......+
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~---~~-------~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~ 526 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLT---WY-------YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV 526 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCc---cH-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 45677888999999999999999864321 00 112346778999999999999999999999975544333
Q ss_pred Cc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368 240 KD--VKLFFVWGKALIGLQEWTSAIKHLKTARKLA 272 (372)
Q Consensus 240 ~~--~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~ 272 (372)
.. ..++..+|.++...|++++|...+.+++.+.
T Consensus 527 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 561 (903)
T PRK04841 527 YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI 561 (903)
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 32 3467788999999999999999999999874
No 246
>KOG1308|consensus
Probab=96.16 E-value=0.0018 Score=59.98 Aligned_cols=58 Identities=12% Similarity=0.195 Sum_probs=54.5
Q ss_pred HHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 215 NNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 215 ~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
+.-|.++.||.+|..++. ++|.+...|-.|+.++++++....|+.+|..|++++|+..
T Consensus 125 ln~G~~~~ai~~~t~ai~----lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa 182 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIE----LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA 182 (377)
T ss_pred hcCcchhhhhcccccccc----cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc
Confidence 346789999999999997 9999999999999999999999999999999999999876
No 247
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.15 E-value=0.011 Score=33.86 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK 240 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~ 240 (372)
.++.++|.|+..++++..|+.+++++++ .+|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~----~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE----LDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc----cCCC
Confidence 4678999999999999999999999997 6664
No 248
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.05 E-value=0.1 Score=52.65 Aligned_cols=135 Identities=7% Similarity=-0.065 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhhhhccCCChHHH-------HHHHHHHHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhhc
Q psy8368 171 IVSAVRRYRDAVKLLINTQVTNYEDQ-------MQLEEYLCRVYRNLMVCYNNNKQ--------YKLTCDCASKALQFAS 235 (372)
Q Consensus 171 ~~~A~~~y~~al~~~~~~~~~~~~~~-------~~~~~l~~~l~~Nla~~~~kl~~--------y~~Ai~~~~~aL~~~~ 235 (372)
-..|..+|.+|..++........... .++..-....+.-++.||..... ...+.....+++.+
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al-- 413 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL-- 413 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc--
Confidence 34677788888776543211100000 01111113455556666655432 34455555555431
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368 236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSS 312 (372)
Q Consensus 236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (372)
..+|..+.+|.-+|..+...|++++|...|++|+.++| +. .+...++++....++..++ ...|.+.+.....
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~---~a~~~lG~~~~~~G~~~eA-~~~~~~A~~L~P~ 485 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SW---LNYVLLGKVYELKGDNRLA-ADAYSTAFNLRPG 485 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CH---HHHHHHHHHHHHcCCHHHH-HHHHHHHHhcCCC
Confidence 13677788999999999999999999999999999999 57 7888889888877766543 3445554444443
No 249
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.04 E-value=0.0095 Score=35.36 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC
Q psy8368 206 VYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK 240 (372)
Q Consensus 206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~ 240 (372)
+++++|.||.++|++++|+..++++++ ..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~----~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK----RYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH----HSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH----HCcC
Confidence 578999999999999999999999997 5565
No 250
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.92 E-value=0.1 Score=38.08 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=59.0
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~ 233 (372)
.+....+.|-.+|.+.+..+|+..++++++.....+ .+..++.-++.+|...|+|.+++.+...=+.+
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~------------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE------------DRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778899999999999999999999998764431 23566777889999999999999999888876
Q ss_pred hccCC
Q psy8368 234 ASHFA 238 (372)
Q Consensus 234 ~~~~~ 238 (372)
...++
T Consensus 73 A~ele 77 (80)
T PF10579_consen 73 AEELE 77 (80)
T ss_pred HHHcc
Confidence 55443
No 251
>KOG2471|consensus
Probab=95.90 E-value=0.025 Score=54.96 Aligned_cols=125 Identities=14% Similarity=0.054 Sum_probs=89.7
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-h
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ-F 233 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~-~ 233 (372)
+..+.-+.+..|..|+|.+|.+.....-......-.-+. ++ ..-..++|+|-.+++++.|.-++.++.+||+ .
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~----q~--~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~ 313 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITP----QL--SSCIFNNNLGCIHYQLGCYQASSVLFLKALRNS 313 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccc----hh--hhheeecCcceEeeehhhHHHHHHHHHHHHHHH
Confidence 455666788888888888888776443221111100010 00 1134568999999999999999999999995 2
Q ss_pred hcc-------------CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368 234 ASH-------------FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKA 288 (372)
Q Consensus 234 ~~~-------------~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~ 288 (372)
+.. ........+|+.|..|+..|+.-.|.++|.++.+.--.|+ -+|-.+++|
T Consensus 314 c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP---rlWLRlAEc 378 (696)
T KOG2471|consen 314 CSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP---RLWLRLAEC 378 (696)
T ss_pred HHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc---HHHHHHHHH
Confidence 211 1233566899999999999999999999999999999998 777777765
No 252
>KOG1586|consensus
Probab=95.85 E-value=0.62 Score=41.47 Aligned_cols=113 Identities=17% Similarity=0.202 Sum_probs=76.5
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~ 233 (372)
.+..+-..||.|-.++++..|-..|.+|-.+--...+..+ ...+|.-.+.||-+- +..+|+.+.++++++
T Consensus 33 Aadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhD---------aat~YveA~~cykk~-~~~eAv~cL~~aieI 102 (288)
T KOG1586|consen 33 AAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHD---------AATTYVEAANCYKKV-DPEEAVNCLEKAIEI 102 (288)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchh---------HHHHHHHHHHHhhcc-ChHHHHHHHHHHHHH
Confidence 3445555666666778888888888888776543321111 157788888888765 999999999999986
Q ss_pred hccCCCC--chhHHHHHHHHHHh-cCCHHHHHHHHHHHHhhcCCCc
Q psy8368 234 ASHFATK--DVKLFFVWGKALIG-LQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 234 ~~~~~p~--~~ka~~r~a~a~~~-l~~~e~A~~~~~~al~l~p~~~ 276 (372)
+.....= -++-+.-+|..|.. +.+++.|+.+|+.|-..-..+.
T Consensus 103 yt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee 148 (288)
T KOG1586|consen 103 YTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE 148 (288)
T ss_pred HHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh
Confidence 6444221 22334456666654 5889999999999987655443
No 253
>KOG2796|consensus
Probab=95.83 E-value=0.38 Score=43.57 Aligned_cols=95 Identities=6% Similarity=0.008 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHH
Q psy8368 203 LCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAE 280 (372)
Q Consensus 203 ~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~ 280 (372)
...+...++...++.|+-+-|..+++.+-+....++.. +.-.+-+.+.+|...++|.+|...|.+++..||.++ .
T Consensus 211 ~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~---~ 287 (366)
T KOG2796|consen 211 EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA---V 287 (366)
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCch---h
Confidence 35678889999999999999999999666543334444 333455677778888999999999999999999998 7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8368 281 IDKEILKADLGNQQYQKETK 300 (372)
Q Consensus 281 ~~~~l~~~~~~~~~~~~~~~ 300 (372)
+...-+.|..-.++...+.|
T Consensus 288 a~NnKALcllYlg~l~DAiK 307 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALK 307 (366)
T ss_pred hhchHHHHHHHHHHHHHHHH
Confidence 76666666665555544443
No 254
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=95.79 E-value=0.11 Score=50.56 Aligned_cols=125 Identities=12% Similarity=0.128 Sum_probs=78.4
Q ss_pred HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHH---HHHHHHH
Q psy8368 152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYK---LTCDCAS 228 (372)
Q Consensus 152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~---~Ai~~~~ 228 (372)
+.........|-.++..|+|.+|+..|+..|..++-....+..+..+++++...|..-+-.+-+.+.+-. .....-.
T Consensus 201 l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~k 280 (422)
T PF06957_consen 201 LSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQK 280 (422)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH
Confidence 3444455667999999999999999999999988776666666777888887776554444444333211 1112222
Q ss_pred HHHHhh---c--cCCCCchhHHHHHHHH-HHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 229 KALQFA---S--HFATKDVKLFFVWGKA-LIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 229 ~aL~~~---~--~~~p~~~ka~~r~a~a-~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
+.++++ . .++|.+.-.-+|.|.. .+++++|.-|...-++.|++.|...
T Consensus 281 R~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 281 RNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 233221 1 1455555555555554 4788999999999999999999876
No 255
>KOG2376|consensus
Probab=95.75 E-value=0.21 Score=49.81 Aligned_cols=114 Identities=11% Similarity=0.103 Sum_probs=76.3
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCC----------ChHHHHHHH-----H--H-HHHHHHHHHHHHHHc
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVT----------NYEDQMQLE-----E--Y-LCRVYRNLMVCYNNN 217 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~----------~~~~~~~~~-----~--l-~~~l~~Nla~~~~kl 217 (372)
..+...-|.+...++|++|+..-.+.+...+..... .+.-...+. . . .....+-.|.|.+++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 455566667777777777777766666654322100 000000000 0 0 012235778999999
Q ss_pred cCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 218 KQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 218 ~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
++.++|+.+++ . +++...+++.-+|+.++.+++|++|+..|+...+-+.++.
T Consensus 93 nk~Dealk~~~-~------~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 93 NKLDEALKTLK-G------LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred ccHHHHHHHHh-c------ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 99999999888 3 5667788899999999999999999999999888776655
No 256
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.70 E-value=0.15 Score=53.57 Aligned_cols=62 Identities=15% Similarity=0.156 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARK 270 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~ 270 (372)
..|+.+..++...|+++.|...+++.++ ++|++...|.-++.+|...|++++|.+.++...+
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~----~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYG----MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhC----CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3466666666677777777777777765 6677766777777777777777777777766654
No 257
>KOG1585|consensus
Probab=95.47 E-value=0.32 Score=43.51 Aligned_cols=134 Identities=10% Similarity=0.086 Sum_probs=84.8
Q ss_pred hhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccC--C
Q psy8368 161 SGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHF--A 238 (372)
Q Consensus 161 ~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~--~ 238 (372)
++-......+.++|+..|++++.++... ....+-..++...+..+.+++.|.+|-..+.+-..+.... -
T Consensus 116 KAak~lenv~Pd~AlqlYqralavve~~---------dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y 186 (308)
T KOG1585|consen 116 KAAKALENVKPDDALQLYQRALAVVEED---------DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY 186 (308)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc
Confidence 3444455566777777777777776432 1223335678888899999999999988777654322212 2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8368 239 TKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFS 308 (372)
Q Consensus 239 p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
+.-.|++.-.-.+|+-..+|..|..+++...++..-+. ...-..+...+..|.+......++++.
T Consensus 187 ~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~-----sed~r~lenLL~ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 187 NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLK-----SEDSRSLENLLTAYDEGDIEEIKKVLS 251 (308)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccC-----hHHHHHHHHHHHHhccCCHHHHHHHHc
Confidence 44556777777778888899999999999887754332 112233344445555555555555543
No 258
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.27 E-value=0.26 Score=37.49 Aligned_cols=69 Identities=13% Similarity=0.103 Sum_probs=50.5
Q ss_pred HHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCC
Q psy8368 164 NAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFA 238 (372)
Q Consensus 164 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~ 238 (372)
...+.|+|..|+..+.+..++......... .........|+|.++...|++++|+..+++|++++...+
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 345689999999999998887644321110 112245678899999999999999999999998664443
No 259
>KOG4340|consensus
Probab=95.27 E-value=0.34 Score=44.58 Aligned_cols=124 Identities=12% Similarity=0.103 Sum_probs=73.0
Q ss_pred HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----
Q psy8368 157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ---- 232 (372)
Q Consensus 157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~---- 232 (372)
.+--.|-.|+...+|..|..+|.+.-...|.. ....+--|+.+++.+.|..|+........
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~---------------~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L 110 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPEL---------------EQYRLYQAQSLYKACIYADALRVAFLLLDNPAL 110 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH---------------HHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHH
Confidence 34457889999999999999999987776543 11222223333333333333332221110
Q ss_pred ------------h-----------hccCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Q psy8368 233 ------------F-----------ASHFA-TKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKA 288 (372)
Q Consensus 233 ------------~-----------~~~~~-p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~ 288 (372)
+ .+.+. .+.+....+.|...++-|+|++|+.-|+.|++...-++ -+-..++.+
T Consensus 111 ~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp---llAYniALa 187 (459)
T KOG4340|consen 111 HSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP---LLAYNLALA 187 (459)
T ss_pred HHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc---hhHHHHHHH
Confidence 0 00011 24555677777777888888888888888888777666 566666666
Q ss_pred HHHHHHHHHH
Q psy8368 289 DLGNQQYQKE 298 (372)
Q Consensus 289 ~~~~~~~~~~ 298 (372)
.-+.+++..+
T Consensus 188 Hy~~~qyasA 197 (459)
T KOG4340|consen 188 HYSSRQYASA 197 (459)
T ss_pred HHhhhhHHHH
Confidence 5555555443
No 260
>KOG1585|consensus
Probab=95.25 E-value=2.2 Score=38.40 Aligned_cols=114 Identities=12% Similarity=0.018 Sum_probs=74.7
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
..+..+...++.|-..++|++|..+..+|++..+....+... +..|-..+...-++..|.++..++++|..
T Consensus 29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA---------AKayEqaamLake~~klsEvvdl~eKAs~ 99 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA---------AKAYEQAAMLAKELSKLSEVVDLYEKASE 99 (308)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH---------HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 346667777788888899999999999999876554433221 34555566666778888888888888876
Q ss_pred hhccC-CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q psy8368 233 FASHF-ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD 275 (372)
Q Consensus 233 ~~~~~-~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~ 275 (372)
.+-.. .|+-+-.-.-+|-=..+.-+.++|+..|++++.+-..+
T Consensus 100 lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence 44222 23322222333333445667888888888888775444
No 261
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.16 E-value=0.53 Score=51.70 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=70.5
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhh--hh----------c-cCCC-hHHHHHHHHHH-------HHHHHHHHHHH
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLL--IN----------T-QVTN-YEDQMQLEEYL-------CRVYRNLMVCY 214 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~--~~----------~-~~~~-~~~~~~~~~l~-------~~l~~Nla~~~ 214 (372)
..+....+.|.+.|++++|+..|.+....- +. . .... ++....+..+. ...|+.+..+|
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay 694 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 456666666777777777777776655321 00 0 0000 00111111111 35677788888
Q ss_pred HHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh--hcCCCc
Q psy8368 215 NNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARK--LAAKDS 276 (372)
Q Consensus 215 ~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~--l~p~~~ 276 (372)
.+.|++++|+..++..... ...| +...|..+..+|...|++++|++.|.+... +.|+..
T Consensus 695 ~k~G~~eeA~~lf~eM~~~--g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 695 SNAKNWKKALELYEDIKSI--KLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHc--CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 8888888888888877541 1223 556777888888888888888888887654 345544
No 262
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.13 E-value=0.033 Score=49.14 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=56.3
Q ss_pred HHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 212 VCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 212 ~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
....+.++++.|.+.+.++|. +-|.+.-.|||+|....+.|+++.|...|.+.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~----lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALE----LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhh----cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345567899999999999997 8899999999999999999999999999999999999875
No 263
>KOG4507|consensus
Probab=95.00 E-value=0.16 Score=50.69 Aligned_cols=99 Identities=11% Similarity=-0.035 Sum_probs=79.9
Q ss_pred hhHHHH-hccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368 161 SGKNAF-NDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT 239 (372)
Q Consensus 161 ~Gn~~~-~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p 239 (372)
.+..|. .+|+..+|+.+|..|+-+.+... ....++.+|..+.+.|...+|--....|+. --|
T Consensus 218 ~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~-------------kdi~lLSlaTiL~RaG~sadA~iILhAA~~----dA~ 280 (886)
T KOG4507|consen 218 MASFYWRIKGEPYQAVECAMRALHFSSRHN-------------KDIALLSLATVLHRAGFSADAAVILHAALD----DAD 280 (886)
T ss_pred HHHHHHHHcCChhhhhHHHHHHhhhCCccc-------------ccchhhhHHHHHHHcccccchhheeehhcc----CCc
Confidence 333443 58999999999999998865421 135677899999999999988888888875 334
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 240 KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 240 ~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
.-..-+|-++.++..+++|...+.+|..+++.+|...
T Consensus 281 ~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~ 317 (886)
T KOG4507|consen 281 FFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFE 317 (886)
T ss_pred cccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchh
Confidence 4455599999999999999999999999999999765
No 264
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.97 E-value=0.76 Score=50.47 Aligned_cols=26 Identities=8% Similarity=-0.109 Sum_probs=12.3
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHH
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDA 181 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~a 181 (372)
..+....+.+.+.|++++|...|.+.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM 568 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEM 568 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444444444445555555444444
No 265
>PLN03077 Protein ECB2; Provisional
Probab=94.72 E-value=0.58 Score=50.48 Aligned_cols=133 Identities=5% Similarity=-0.106 Sum_probs=79.7
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhh--hhccC------------CChHHHHHHHHHH--------HHHHHHHHH
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLL--INTQV------------TNYEDQMQLEEYL--------CRVYRNLMV 212 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~--~~~~~------------~~~~~~~~~~~l~--------~~l~~Nla~ 212 (372)
...+....+.|.+.|+.++|+..|.+....- |...+ ..++...-++.+. ...|+.+..
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 3457788888999999999999998866531 11000 0001111111111 235666667
Q ss_pred HHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368 213 CYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN 292 (372)
Q Consensus 213 ~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~ 292 (372)
+|.+.|++++|...+++.- +.|+ ...|-.+-.++..-++.+.|....+++++++|++. ...-.|..+....
T Consensus 634 ~l~r~G~~~eA~~~~~~m~-----~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~---~~y~ll~n~ya~~ 704 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKMP-----ITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSV---GYYILLCNLYADA 704 (857)
T ss_pred HHHhCCCHHHHHHHHHHCC-----CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc---chHHHHHHHHHHC
Confidence 7777777777777666532 3343 34455555566666777777777777777777777 6666666666555
Q ss_pred HHHH
Q psy8368 293 QQYQ 296 (372)
Q Consensus 293 ~~~~ 296 (372)
++..
T Consensus 705 g~~~ 708 (857)
T PLN03077 705 GKWD 708 (857)
T ss_pred CChH
Confidence 5444
No 266
>KOG1915|consensus
Probab=94.71 E-value=1.4 Score=43.16 Aligned_cols=137 Identities=12% Similarity=0.088 Sum_probs=101.3
Q ss_pred hhHHHHHHHH----HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHH
Q psy8368 146 PAFAKVLKRA----QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYK 221 (372)
Q Consensus 146 ~~~~~~~~~~----~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~ 221 (372)
.+|+..++.. ..+...|.-=..++++..|-..|.+||...... ++++...+.|-++.+...
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~---------------itLWlkYae~Emknk~vN 124 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRN---------------ITLWLKYAEFEMKNKQVN 124 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc---------------chHHHHHHHHHHhhhhHh
Confidence 4555545432 233445555556778888888888888775433 789999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368 222 LTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKA 301 (372)
Q Consensus 222 ~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 301 (372)
.|....++|+. +=|.--+.||.....-..+|+...|...|.+=+...|+.. ++...-+...+.+.. ...+.
T Consensus 125 hARNv~dRAvt----~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq----aW~sfI~fElRykei-eraR~ 195 (677)
T KOG1915|consen 125 HARNVWDRAVT----ILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ----AWLSFIKFELRYKEI-ERARS 195 (677)
T ss_pred HHHHHHHHHHH----hcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH----HHHHHHHHHHHhhHH-HHHHH
Confidence 99999999997 6688888999999889999999999999999999999865 444444443433333 33455
Q ss_pred HHHhh
Q psy8368 302 RCMKM 306 (372)
Q Consensus 302 ~~~~~ 306 (372)
.|.++
T Consensus 196 IYerf 200 (677)
T KOG1915|consen 196 IYERF 200 (677)
T ss_pred HHHHH
Confidence 55554
No 267
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=94.66 E-value=0.45 Score=37.81 Aligned_cols=84 Identities=12% Similarity=0.094 Sum_probs=62.3
Q ss_pred HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368 157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH 236 (372)
Q Consensus 157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~ 236 (372)
++-..|+..++.+++-.|+-+|++|+.+........+.+..++-...+.-.-|+|..+..+|+-+=.++|.+-|-+..-+
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 45568999999999999999999999987665333333444444455556679999999999999999988766543333
Q ss_pred CCCC
Q psy8368 237 FATK 240 (372)
Q Consensus 237 ~~p~ 240 (372)
+-|.
T Consensus 83 LiPQ 86 (140)
T PF10952_consen 83 LIPQ 86 (140)
T ss_pred hccC
Confidence 5454
No 268
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.54 E-value=0.39 Score=50.54 Aligned_cols=130 Identities=8% Similarity=-0.060 Sum_probs=83.6
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCCh-----------------HHHHHHHHHH--------HHHHHH
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNY-----------------EDQMQLEEYL--------CRVYRN 209 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-----------------~~~~~~~~l~--------~~l~~N 209 (372)
...+......|.+.|++++|+..|.+.+..- ..|+. +...-++.+. ...|+.
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g---~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEG---VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 3456777778888888888888888765431 01110 1111111111 125666
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q psy8368 210 LMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKAD 289 (372)
Q Consensus 210 la~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~ 289 (372)
+..+|.+.|++++|...+++.. ..| +...|..+..++...|+++.|...+++.++++|++. .....|..+.
T Consensus 468 li~~l~r~G~~~eA~~~~~~~~-----~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~---~~y~~L~~~y 538 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRAP-----FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL---NNYVVLLNLY 538 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHCC-----CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC---cchHHHHHHH
Confidence 7777788888888887776542 334 445677778888888888888888888888888876 5566666665
Q ss_pred HHHHHHH
Q psy8368 290 LGNQQYQ 296 (372)
Q Consensus 290 ~~~~~~~ 296 (372)
...++..
T Consensus 539 ~~~G~~~ 545 (697)
T PLN03081 539 NSSGRQA 545 (697)
T ss_pred HhCCCHH
Confidence 5555543
No 269
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=94.44 E-value=0.091 Score=33.91 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 245 FFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 245 ~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
.+.+|.+|..+|+++.|...++.++. .++.+
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~-~~~~~ 32 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE-EGDEA 32 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH-cCCHH
Confidence 36788888888888888888888883 44443
No 270
>KOG0549|consensus
Probab=94.38 E-value=0.039 Score=46.70 Aligned_cols=39 Identities=33% Similarity=0.466 Sum_probs=35.1
Q ss_pred EcCCCccchHHHHHhccCCCCcEEEEEecCCCccCCCCC
Q psy8368 64 QLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGC 102 (372)
Q Consensus 64 ~~g~~~~~~~le~~l~~m~~Ge~~~~~i~~~~~yg~~g~ 102 (372)
.+|.+.++++++.++.+|..||+..+++||.++||..+.
T Consensus 2 ~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~ 40 (188)
T KOG0549|consen 2 TLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR 40 (188)
T ss_pred cccceEEecCHHHHhhhhhccccceeccCCccccccccc
Confidence 467789999999999999999999999999999995443
No 271
>KOG2610|consensus
Probab=94.38 E-value=0.94 Score=42.48 Aligned_cols=103 Identities=9% Similarity=-0.046 Sum_probs=66.9
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS 235 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~ 235 (372)
+.....+-.++..|++.+|...+.+.|+-.|..- ....-.-.+|+-+|+...-....++++.
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDl---------------la~kfsh~a~fy~G~~~~~k~ai~kIip--- 165 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDL---------------LAVKFSHDAHFYNGNQIGKKNAIEKIIP--- 165 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhh---------------hhhhhhhhHHHhccchhhhhhHHHHhcc---
Confidence 5566678888999999999999999998776541 1111111234445666666666666663
Q ss_pred cCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 236 HFATKD---VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 236 ~~~p~~---~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
.-+++- .-..=-.+.++.+.|-|++|.+.-++|++++|.|.
T Consensus 166 ~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~ 209 (491)
T KOG2610|consen 166 KWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDC 209 (491)
T ss_pred ccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcch
Confidence 113332 22333456777777888888888888888888776
No 272
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.34 E-value=0.3 Score=37.11 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=48.9
Q ss_pred HHHccCHHHHHHHHHHHHHhhccCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q psy8368 214 YNNNKQYKLTCDCASKALQFASHFATKD-----VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD 275 (372)
Q Consensus 214 ~~kl~~y~~Ai~~~~~aL~~~~~~~p~~-----~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~ 275 (372)
.++.++|..|++...+..+....-.... .-|++++|.++...|++++|+..++.|+++...+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4568999999888888876443222222 4688999999999999999999999999987643
No 273
>KOG2114|consensus
Probab=94.31 E-value=1.4 Score=45.84 Aligned_cols=113 Identities=15% Similarity=0.210 Sum_probs=64.6
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc----CCChHHHHHHHHHHHHHH----------HHHHHHHHHccC
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ----VTNYEDQMQLEEYLCRVY----------RNLMVCYNNNKQ 219 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~----~~~~~~~~~~~~l~~~l~----------~Nla~~~~kl~~ 219 (372)
.++.++..|+-+|++|+|++|...|-++|.+++... -.+...-.++...+-.++ .-|-.||.|+++
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcc
Confidence 467788999999999999999999999998764321 111111222222222211 124569999987
Q ss_pred HHHHHHH------------HHHHHHhhccCCCCchhHHHHHH-----------HHHHhcCCHHHHHHHHHHH
Q psy8368 220 YKLTCDC------------ASKALQFASHFATKDVKLFFVWG-----------KALIGLQEWTSAIKHLKTA 268 (372)
Q Consensus 220 y~~Ai~~------------~~~aL~~~~~~~p~~~ka~~r~a-----------~a~~~l~~~e~A~~~~~~a 268 (372)
-++-..+ .+.|++++. +.+...--+++| ..+..+++|++|+.++...
T Consensus 447 ~~kL~efI~~~~~g~~~fd~e~al~Ilr--~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 447 VEKLTEFISKCDKGEWFFDVETALEILR--KSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHhcCCCcceeeeHHHHHHHHH--HhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcC
Confidence 5443332 334444331 112111111222 2345578899999888754
No 274
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=94.31 E-value=1.6 Score=41.75 Aligned_cols=95 Identities=21% Similarity=0.155 Sum_probs=54.3
Q ss_pred HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368 160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT 239 (372)
Q Consensus 160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p 239 (372)
..+..+...|+++.|...-..+++.--. + .++. =.-..+.+++..=++..++.++ ..|
T Consensus 268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D-----~-----------~L~~--~~~~l~~~d~~~l~k~~e~~l~----~h~ 325 (400)
T COG3071 268 AYAERLIRLGDHDEAQEIIEDALKRQWD-----P-----------RLCR--LIPRLRPGDPEPLIKAAEKWLK----QHP 325 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccC-----h-----------hHHH--HHhhcCCCCchHHHHHHHHHHH----hCC
Confidence 3455566778888888887777764211 0 0000 0112345556666666666665 556
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 240 KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 240 ~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
+++-.++-+|..|++.+.|.+|..+|+.|++..|+..
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~ 362 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS 362 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh
Confidence 6666666666666666666666666666666666543
No 275
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.19 E-value=0.86 Score=43.14 Aligned_cols=72 Identities=17% Similarity=0.087 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCH---------------
Q psy8368 200 EEYLCRVYRNLMVCYNNN------KQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEW--------------- 258 (372)
Q Consensus 200 ~~l~~~l~~Nla~~~~kl------~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~--------------- 258 (372)
......++.-+|.-...+ +.+++++..+..+++ ++|.+.++|+..|..+..+=+.
T Consensus 248 ~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 323 (352)
T PF02259_consen 248 KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK----LDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSE 323 (352)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH----hChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHH
Confidence 344556666777666666 778888888888887 8888888888888877654221
Q ss_pred --HHHHHHHHHHHhhcCCC
Q psy8368 259 --TSAIKHLKTARKLAAKD 275 (372)
Q Consensus 259 --e~A~~~~~~al~l~p~~ 275 (372)
..|+..|-+|+.+.+..
T Consensus 324 ~~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 324 YLEQAIEGYLKALSLGSKY 342 (352)
T ss_pred HHHHHHHHHHHHHhhCCCc
Confidence 33777777777777764
No 276
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.09 E-value=0.6 Score=36.53 Aligned_cols=103 Identities=15% Similarity=0.185 Sum_probs=70.2
Q ss_pred hhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHH----HHHccCHHHHHHHHHHHHHhhcc
Q psy8368 161 SGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVC----YNNNKQYKLTCDCASKALQFASH 236 (372)
Q Consensus 161 ~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~----~~kl~~y~~Ai~~~~~aL~~~~~ 236 (372)
.+..+|.+|++-+|++.-+..+..-......+ .++.+.-.++..+|.. -.+.--..-++.++.++..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~-----~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~---- 72 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW-----LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE---- 72 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchH-----HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc----
Confidence 56789999999999999999887654432111 2333333444433332 1222235567778888886
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368 237 FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA 272 (372)
Q Consensus 237 ~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~ 272 (372)
+.|..+..+|.+|.-+-....|+++..-.+++|.+.
T Consensus 73 Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 73 LSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred cChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 888888888888888877888888888888888763
No 277
>KOG4814|consensus
Probab=93.97 E-value=0.35 Score=48.79 Aligned_cols=75 Identities=9% Similarity=0.106 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 202 YLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH--FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 202 l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~--~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
....++-|-|.-+++.++|..+++.|...++.... .+-..+|..-.++.||+.+.+.+.|+++++.|-+.+|.+.
T Consensus 352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~ 428 (872)
T KOG4814|consen 352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP 428 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH
Confidence 33567778899999999999999999999974322 1223567777889999999999999999999999999998
No 278
>KOG3081|consensus
Probab=93.95 E-value=1.2 Score=40.46 Aligned_cols=69 Identities=13% Similarity=0.059 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHHHHhhcCCCc
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAI-KHLKTARKLAAKDS 276 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~-~~~~~al~l~p~~~ 276 (372)
..+.+-.|.|++.+++|++|....+.+|. .+++++..+.++-.+-..+|.-.++. +.+.+....+|.++
T Consensus 207 ~~llnG~Av~~l~~~~~eeAe~lL~eaL~----kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 207 PLLLNGQAVCHLQLGRYEEAESLLEEALD----KDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred hHHHccHHHHHHHhcCHHHHHHHHHHHHh----ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 35778899999999999999999999997 89999999999999988888766654 45556666788887
No 279
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.94 E-value=0.13 Score=31.95 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368 243 KLFFVWGKALIGLQEWTSAIKHLKTARKLA 272 (372)
Q Consensus 243 ka~~r~a~a~~~l~~~e~A~~~~~~al~l~ 272 (372)
.++.++|.+|..+|++++|+..+++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 478899999999999999999999998764
No 280
>KOG2300|consensus
Probab=93.91 E-value=1.8 Score=42.60 Aligned_cols=93 Identities=18% Similarity=0.191 Sum_probs=68.7
Q ss_pred hhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC
Q psy8368 161 SGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK 240 (372)
Q Consensus 161 ~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~ 240 (372)
.|-....-+.|+.|..+|..|++.... .++.+.+..|+|..|+..++- .++.++++ .+.|.
T Consensus 373 lGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~----ed~y~~ld---~i~p~ 433 (629)
T KOG2300|consen 373 LGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDA----EDLYKALD---LIGPL 433 (629)
T ss_pred HhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccH----HHHHHHHH---hcCCC
Confidence 444444556788888888888876432 345688999999999997763 34455555 35555
Q ss_pred c----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368 241 D----------VKLFFVWGKALIGLQEWTSAIKHLKTARKLA 272 (372)
Q Consensus 241 ~----------~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~ 272 (372)
| .-++|-.|.-.+..+++.+|...+.+.|+..
T Consensus 434 nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 434 NTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 3 2368888888899999999999999999987
No 281
>KOG0686|consensus
Probab=93.83 E-value=0.35 Score=46.25 Aligned_cols=101 Identities=20% Similarity=0.157 Sum_probs=79.3
Q ss_pred HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh--
Q psy8368 157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA-- 234 (372)
Q Consensus 157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~-- 234 (372)
.+...|.-|...|++..|++.|.++-.++.... -.+..+.|+-.+-+-+++|.....+..+|...+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~k------------hvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~ 219 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAK------------HVINMCLNLILVSIYMGNWGHVLSYISKAESTPDA 219 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchH------------HHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh
Confidence 456788999999999999999999888874421 125677888888888999999999999998632
Q ss_pred -ccC-CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8368 235 -SHF-ATKDVKLFFVWGKALIGLQEWTSAIKHLKTAR 269 (372)
Q Consensus 235 -~~~-~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al 269 (372)
... ..-.+++..-.|.+++.++.|..|..+|..+.
T Consensus 220 ~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 220 NENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 001 11256678888999999999999999988775
No 282
>KOG1915|consensus
Probab=93.78 E-value=1.8 Score=42.44 Aligned_cols=56 Identities=13% Similarity=0.075 Sum_probs=50.0
Q ss_pred HHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q psy8368 214 YNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAA 273 (372)
Q Consensus 214 ~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p 273 (372)
-+++++++.+...|++-|. .+|.|.-+|...|..-..||+.+.|...|.-|+.-..
T Consensus 447 ElqL~efDRcRkLYEkfle----~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLE----FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHhhHHHHHHHHHHHHh----cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 4578899999999999997 9999999999999999999999999999998886544
No 283
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.76 E-value=0.69 Score=42.61 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy8368 195 DQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKL 271 (372)
Q Consensus 195 ~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l 271 (372)
....+.+....++..++..+...++++.++...++.+. .+|-+-++|.++=.+|+..|+...|+..|++..++
T Consensus 144 ~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~----~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 144 QRRALEELFIKALTKLAEALIACGRADAVIEHLERLIE----LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh----cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 34566677789999999999999999999999999997 99999999999999999999999999999998874
No 284
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.59 E-value=0.14 Score=31.83 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy8368 243 KLFFVWGKALIGLQEWTSAIKHLKTARKLA 272 (372)
Q Consensus 243 ka~~r~a~a~~~l~~~e~A~~~~~~al~l~ 272 (372)
..|.++|.+-+..++|++|+.+|.+|+++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467888888888999999999999888764
No 285
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.57 E-value=0.67 Score=38.05 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=54.1
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~ 233 (372)
....+...+..+...|++..|+..+.+++...|.. -.++..+-.||..+|++..|+..|.+..+.
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~---------------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYD---------------EEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT----------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45677778888999999999999999999997765 578888999999999999999999988653
No 286
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.57 E-value=0.93 Score=45.28 Aligned_cols=73 Identities=8% Similarity=-0.020 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
.-.+...|..+...|+.++|+..+++++........-..-.+|.+|.+|+.+.+|++|..++.+..+.+.-..
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSk 339 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSK 339 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHH
Confidence 4567788999999999999999999998521111112344789999999999999999999999999766544
No 287
>KOG2471|consensus
Probab=93.35 E-value=0.12 Score=50.47 Aligned_cols=93 Identities=11% Similarity=0.054 Sum_probs=68.7
Q ss_pred HHHHhhHHHHhccCHHHHHHHHHHHHH-hhhhcc---CCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 157 ELGASGKNAFNDKNIVSAVRRYRDAVK-LLINTQ---VTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~-~~~~~~---~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
-+.+.|-++|+.|.|.-+...|.+|++ .+.... .+... ..-...-...+++|.|..|+..|+.-.|.+++.++.+
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~-~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT-FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc-eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 345778888999999999999999996 432211 00000 0000111146789999999999999999999999998
Q ss_pred hhccCCCCchhHHHHHHHHHHh
Q psy8368 233 FASHFATKDVKLFFVWGKALIG 254 (372)
Q Consensus 233 ~~~~~~p~~~ka~~r~a~a~~~ 254 (372)
.--.|+..|+|+|.|++.
T Consensus 364 ----vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 364 ----VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred ----HHhcCcHHHHHHHHHHHH
Confidence 556788999999999875
No 288
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.27 E-value=6.7 Score=36.17 Aligned_cols=105 Identities=17% Similarity=0.238 Sum_probs=74.3
Q ss_pred HHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhhcc---CC--
Q psy8368 165 AFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNK-QYKLTCDCASKALQFASH---FA-- 238 (372)
Q Consensus 165 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~-~y~~Ai~~~~~aL~~~~~---~~-- 238 (372)
..++|+++.|..+|.++-...... .+ ........+++|.|...++.+ +|..|+.+.++|+++++. .+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~-~~------~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~ 75 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSL-DP------DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL 75 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcC-Cc------HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc
Confidence 457899999999999998876411 11 122344778999999999999 999999999999997532 22
Q ss_pred -CC----chhHHHHHHHHHHhcCCHHH---HHHHHHHHHhhcCCCc
Q psy8368 239 -TK----DVKLFFVWGKALIGLQEWTS---AIKHLKTARKLAAKDS 276 (372)
Q Consensus 239 -p~----~~ka~~r~a~a~~~l~~~e~---A~~~~~~al~l~p~~~ 276 (372)
|+ ..+.+.-++.+|...+.++. |...++.+-.-.|+.+
T Consensus 76 ~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~ 121 (278)
T PF08631_consen 76 SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP 121 (278)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc
Confidence 22 23456678999998887654 4444445545556666
No 289
>KOG1070|consensus
Probab=93.24 E-value=2.6 Score=46.48 Aligned_cols=102 Identities=17% Similarity=0.093 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy8368 150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASK 229 (372)
Q Consensus 150 ~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~ 229 (372)
|.++.-.+|.+.-|.|- .-+.-.+.|.+|.++++. ..+|..|+-.|.+-+.+++|.+.++.
T Consensus 1495 EKLNiWiA~lNlEn~yG---~eesl~kVFeRAcqycd~----------------~~V~~~L~~iy~k~ek~~~A~ell~~ 1555 (1710)
T KOG1070|consen 1495 EKLNIWIAYLNLENAYG---TEESLKKVFERACQYCDA----------------YTVHLKLLGIYEKSEKNDEADELLRL 1555 (1710)
T ss_pred HHHHHHHHHHhHHHhhC---cHHHHHHHHHHHHHhcch----------------HHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 44444455555555443 333444556666666543 25566666666666666666666666
Q ss_pred HHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q psy8368 230 ALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK 274 (372)
Q Consensus 230 aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~ 274 (372)
-++ .. -+..+.|.+.|..++..++-+.|...+.+||+.-|.
T Consensus 1556 m~K---KF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1556 MLK---KF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHH---Hh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 665 12 245556666666666666666666666666666665
No 290
>KOG1070|consensus
Probab=93.02 E-value=1.7 Score=47.76 Aligned_cols=77 Identities=8% Similarity=0.035 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHH
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEID 282 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~ 282 (372)
..|...|..+++..+-+.|.....+||+ .-|. +.+..-.-|+.-++.|+-+.+...|+-.+.-.|.-. ++|
T Consensus 1565 ~vW~~y~~fLl~~ne~~aa~~lL~rAL~----~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRt---DlW 1637 (1710)
T KOG1070|consen 1565 KVWIMYADFLLRQNEAEAARELLKRALK----SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRT---DLW 1637 (1710)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHh----hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccch---hHH
Confidence 3444444444444444444444444444 2222 333333444444444444444444444444444444 444
Q ss_pred HHHHHH
Q psy8368 283 KEILKA 288 (372)
Q Consensus 283 ~~l~~~ 288 (372)
.-+...
T Consensus 1638 ~VYid~ 1643 (1710)
T KOG1070|consen 1638 SVYIDM 1643 (1710)
T ss_pred HHHHHH
Confidence 444433
No 291
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.96 E-value=1.4 Score=40.47 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8368 194 EDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTA 268 (372)
Q Consensus 194 ~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~a 268 (372)
....-+..+...+++..|..|.+.|.|.+|+..|++++. ++|-+...+.-+-..+..+|+--.|...|++-
T Consensus 269 dererle~ly~kllgkva~~yle~g~~neAi~l~qr~lt----ldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 269 DERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALT----LDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhh----cChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 345666777788888889999999999999999999997 88888888888888888899877776666654
No 292
>PLN03077 Protein ECB2; Provisional
Probab=92.91 E-value=1.8 Score=46.70 Aligned_cols=111 Identities=7% Similarity=-0.016 Sum_probs=59.6
Q ss_pred HHhhHHHHhccCHHHHHHHHHHHHHhhhhccC-------------CChHHHHHHHHHH-------HHHHHHHHHHHHHcc
Q psy8368 159 GASGKNAFNDKNIVSAVRRYRDAVKLLINTQV-------------TNYEDQMQLEEYL-------CRVYRNLMVCYNNNK 218 (372)
Q Consensus 159 k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~-------------~~~~~~~~~~~l~-------~~l~~Nla~~~~kl~ 218 (372)
...-+.|.+.|++++|...|... ..... ..++....++++. ...|+.+-.+|.+.|
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 34567888899999999888664 11100 0001111111111 123444445566666
Q ss_pred CHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 219 QYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 219 ~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
.+++|..+++...+.. .+.| +...|.-+..+|.+.|++++|.+.+++. .+.|+-.
T Consensus 604 ~v~ea~~~f~~M~~~~-gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~ 658 (857)
T PLN03077 604 MVTQGLEYFHSMEEKY-SITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPA 658 (857)
T ss_pred hHHHHHHHHHHHHHHh-CCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHH
Confidence 6666666666665210 1222 4456666777777777777777766654 3455533
No 293
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=92.88 E-value=1.4 Score=40.74 Aligned_cols=114 Identities=18% Similarity=0.105 Sum_probs=76.0
Q ss_pred hhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhhccCCC
Q psy8368 161 SGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN-NKQYKLTCDCASKALQFASHFAT 239 (372)
Q Consensus 161 ~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k-l~~y~~Ai~~~~~aL~~~~~~~p 239 (372)
..+..-+.+..+.|-..|.+|+...... ..+|...|..-+. .++...|...++.+++ .-|
T Consensus 7 ~m~~~~r~~g~~~aR~vF~~a~~~~~~~---------------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk----~f~ 67 (280)
T PF05843_consen 7 YMRFMRRTEGIEAARKVFKRARKDKRCT---------------YHVYVAYALMEYYCNKDPKRARKIFERGLK----KFP 67 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCS----------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHH----HHT
T ss_pred HHHHHHHhCChHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----HCC
Confidence 3344444455777888888887431111 3567777777555 5666669999999998 668
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368 240 KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ 293 (372)
Q Consensus 240 ~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~ 293 (372)
.+...|.....-+..+++.+.|...|++++..-|.......++..........+
T Consensus 68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G 121 (280)
T PF05843_consen 68 SDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG 121 (280)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence 888888888888889999999999999999876654412245555555555544
No 294
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.76 E-value=0.85 Score=40.47 Aligned_cols=43 Identities=9% Similarity=-0.018 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchh--HHHHHHHH
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVK--LFFVWGKA 251 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~k--a~~r~a~a 251 (372)
..+.+-+|..+.++|++++|+.++.+++. +++..+ .+.++|+-
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~-----~~~~s~~~~l~~~AR~ 209 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIG-----SKKASKEPKLKDMARD 209 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHc-----CCCCCCcHHHHHHHHH
Confidence 45777899999999999999999999994 555555 66666654
No 295
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.41 E-value=1.6 Score=43.15 Aligned_cols=57 Identities=19% Similarity=0.082 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Q psy8368 242 VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKET 299 (372)
Q Consensus 242 ~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~ 299 (372)
+-+.+|+|.|..++|+..+|++.++..++..|.+. ...++..|-.+.-.++.|.+.+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~-~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD-NLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc-hhhHHHHHHHHHHhcCCHHHHH
Confidence 44667899999999999999999999999988632 1268888888888888886554
No 296
>KOG3824|consensus
Probab=92.23 E-value=0.58 Score=43.28 Aligned_cols=79 Identities=11% Similarity=0.090 Sum_probs=64.1
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA 234 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~ 234 (372)
+..-...+....+.|+.++|...|.-|+.+.+.. ..++...|...-.-++.-+|-.+|-+||.
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~---------------p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt-- 178 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTN---------------PQILIEMGQFREMHNEIVEADQCYVKALT-- 178 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCC---------------HHHHHHHhHHHHhhhhhHhhhhhhheeee--
Confidence 3333345566778899999999999999998766 46677777777777888899999999996
Q ss_pred ccCCCCchhHHHHHHHHH
Q psy8368 235 SHFATKDVKLFFVWGKAL 252 (372)
Q Consensus 235 ~~~~p~~~ka~~r~a~a~ 252 (372)
++|.|.+|+.+++...
T Consensus 179 --isP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 179 --ISPGNSEALVNRARTT 194 (472)
T ss_pred --eCCCchHHHhhhhccc
Confidence 9999999999988654
No 297
>KOG3364|consensus
Probab=92.15 E-value=1.3 Score=35.92 Aligned_cols=41 Identities=12% Similarity=0.032 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHH
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVW 248 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~ 248 (372)
..|.+-+|..+.++++|++++.+++..|+ .+|+|..|.--.
T Consensus 71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~----~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 71 RECLYYLAVGHYRLKEYSKSLRYVDALLE----TEPNNRQALELK 111 (149)
T ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHh----hCCCcHHHHHHH
Confidence 46777899999999999999999999998 899998876543
No 298
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=91.97 E-value=2.8 Score=38.76 Aligned_cols=99 Identities=12% Similarity=0.035 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHh-cCCHHHHHHHHHHHHhhcCCCccHHHHHHH
Q psy8368 206 VYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIG-LQEWTSAIKHLKTARKLAAKDSVRAEIDKE 284 (372)
Q Consensus 206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~-l~~~e~A~~~~~~al~l~p~~~~~~~~~~~ 284 (372)
+|..+..+..+.+..+.|...+.+|++ ..+.....|...|..-.. .++.+-|...|+++++.-|.+. .++..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~----~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~---~~~~~ 75 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK----DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP---DFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H---HHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH---HHHHH
Confidence 455556667777779999999999995 555578889999998555 6777779999999999999998 77777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy8368 285 ILKADLGNQQYQKETKARCMKMFSSSSS 312 (372)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (372)
.......+.+. ...|..+.+.+.....
T Consensus 76 Y~~~l~~~~d~-~~aR~lfer~i~~l~~ 102 (280)
T PF05843_consen 76 YLDFLIKLNDI-NNARALFERAISSLPK 102 (280)
T ss_dssp HHHHHHHTT-H-HHHHHHHHHHCCTSSC
T ss_pred HHHHHHHhCcH-HHHHHHHHHHHHhcCc
Confidence 76666665543 5667777777666443
No 299
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.82 E-value=8.1 Score=37.88 Aligned_cols=74 Identities=11% Similarity=0.120 Sum_probs=56.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc-cHHHHHHHHHHHH
Q psy8368 211 MVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS-VRAEIDKEILKAD 289 (372)
Q Consensus 211 a~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~-~~~~~~~~l~~~~ 289 (372)
|..++..|+|.+|..++.=..+ ++| ++.+|--+|.|++...+|++|..++... -|++. .-+.+.+.+.-|+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~----iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~dskvqKAl~lCq 540 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTK----IAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDSKVQKALALCQ 540 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHH----hCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHHHHHHHHHHHH
Confidence 4556778999999999998887 888 8999999999999999999999988754 34332 1224555555555
Q ss_pred HHH
Q psy8368 290 LGN 292 (372)
Q Consensus 290 ~~~ 292 (372)
+-+
T Consensus 541 Kh~ 543 (549)
T PF07079_consen 541 KHL 543 (549)
T ss_pred Hhh
Confidence 544
No 300
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.77 E-value=0.42 Score=44.23 Aligned_cols=78 Identities=12% Similarity=0.143 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHH-HHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHH
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFV-WGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEID 282 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r-~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~ 282 (372)
..++...++...+.+.|.+.-..|.++|+ ..|.|+..|.- -+.-|...++++.|...|.++++++|.++ .++
T Consensus 107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~----khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p---~iw 179 (435)
T COG5191 107 PKIWSQYAAYVIKKKMYGEMKNIFAECLT----KHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP---RIW 179 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc---hHH
Confidence 46777778888889999999999999997 99999998876 55667888999999999999999999999 776
Q ss_pred HHHHHH
Q psy8368 283 KEILKA 288 (372)
Q Consensus 283 ~~l~~~ 288 (372)
.+.-++
T Consensus 180 ~eyfr~ 185 (435)
T COG5191 180 IEYFRM 185 (435)
T ss_pred HHHHHH
Confidence 655544
No 301
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.53 E-value=3.1 Score=40.46 Aligned_cols=68 Identities=12% Similarity=0.040 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchh-HHHHHHHHHH-hcCCHHHHHHHHHHHHhhcCC
Q psy8368 202 YLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVK-LFFVWGKALI-GLQEWTSAIKHLKTARKLAAK 274 (372)
Q Consensus 202 l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~k-a~~r~a~a~~-~l~~~e~A~~~~~~al~l~p~ 274 (372)
..+++++.+|-||+.+++|.+|+..+..+|-.. ...| .+..+.--|- -.+..+.....+--++.+.|.
T Consensus 162 ~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi-----~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 162 CHISTYYYVGFAYLMLRRYADAIRTFSQILLYI-----QRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred hheehHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 447889999999999999999999999999411 1111 1111211111 134556777778888888885
No 302
>KOG0292|consensus
Probab=91.50 E-value=3.8 Score=43.14 Aligned_cols=120 Identities=9% Similarity=0.066 Sum_probs=80.6
Q ss_pred HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHcc-------CHHHH-
Q psy8368 152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNK-------QYKLT- 223 (372)
Q Consensus 152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~-------~y~~A- 223 (372)
+.......++|-.+...|+|.+|+++|+.+|-.++-.-..+..+..+.+++...+..-+....+.+. ....+
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence 5667778889999999999999999999998776554444555566666666655333333222221 23333
Q ss_pred -HH-HHHHHHHhhccCCCCch-hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 224 -CD-CASKALQFASHFATKDV-KLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 224 -i~-~~~~aL~~~~~~~p~~~-ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
+. |+.. .+ ++|-+. -|+--.-.++.++++|..|-..-.+.+++.|..+
T Consensus 1068 ElAaYFt~-~~----Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~ 1118 (1202)
T KOG0292|consen 1068 ELAAYFTH-CK----LQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPP 1118 (1202)
T ss_pred HHHHHhhc-CC----CCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCh
Confidence 11 2222 22 555543 3444445678999999999999999999999888
No 303
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.42 E-value=2.6 Score=33.57 Aligned_cols=74 Identities=5% Similarity=-0.147 Sum_probs=57.5
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
+-++--....+...|+|.+++..-.+||.+++.-....++ --.+.+.+.+|+|.++-.+|+.++|+..++.+-+
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd----eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD----EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST----HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc----cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4566667788889999999999999999999764322221 2346678889999999999999999999999876
No 304
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=91.23 E-value=2.7 Score=30.48 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhc
Q psy8368 152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINT 188 (372)
Q Consensus 152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~ 188 (372)
.+.+..+-.++-.+=+.|+|.+|+.+|+.|+..+-..
T Consensus 3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 3567778888899999999999999999999988554
No 305
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.99 E-value=5.2 Score=37.72 Aligned_cols=129 Identities=16% Similarity=0.011 Sum_probs=91.8
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
..+..+...+..+.+.|+|+.|.....++....+..... ...+..-.|..+...|+..+|+......++
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------LPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445677888999999999999999998888764222111 124455566677777888888887777765
Q ss_pred -hhccC-----------------------------CCCchhHHHHHHHHHHhc------CCHHHHHHHHHHHHhhcCCCc
Q psy8368 233 -FASHF-----------------------------ATKDVKLFFVWGKALIGL------QEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 233 -~~~~~-----------------------------~p~~~ka~~r~a~a~~~l------~~~e~A~~~~~~al~l~p~~~ 276 (372)
..... .....++++.+|.-...+ +.+++++..|..|.+++|+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 11100 011356788888887777 899999999999999999998
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q psy8368 277 VRAEIDKEILKADLGNQQY 295 (372)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~~ 295 (372)
.++..++.....+-..
T Consensus 293 ---k~~~~~a~~~~~~~~~ 308 (352)
T PF02259_consen 293 ---KAWHSWALFNDKLLES 308 (352)
T ss_pred ---HHHHHHHHHHHHHHHh
Confidence 7777777766555433
No 306
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=90.99 E-value=3.8 Score=44.24 Aligned_cols=114 Identities=14% Similarity=-0.019 Sum_probs=82.8
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH-------ccCHHHHHHHHH
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN-------NKQYKLTCDCAS 228 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k-------l~~y~~Ai~~~~ 228 (372)
-......+.++..+.|+.|+..|++.-..+|.-.... .+.+.+|...+. ...+.+|+.-++
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (932)
T PRK13184 476 VSCLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGY------------EAQFRLGITLLEKASEQGDPRDFTQALSEFS 543 (932)
T ss_pred eecccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccch------------HHHHHhhHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3445667888899999999999999888776543221 223333443332 135777777777
Q ss_pred HHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q psy8368 229 KALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKAD 289 (372)
Q Consensus 229 ~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~ 289 (372)
+.- -.|.-+--|.-.|.+|..+|+|++-+++|..|++.-|+++ .+-..-..+-
T Consensus 544 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 596 (932)
T PRK13184 544 YLH-----GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHP---EISRLRDHLV 596 (932)
T ss_pred Hhc-----CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCC---ccHHHHHHHH
Confidence 665 4667777899999999999999999999999999999999 5554444443
No 307
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.53 E-value=3.8 Score=34.41 Aligned_cols=84 Identities=8% Similarity=-0.089 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHH
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDK 283 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~ 283 (372)
+..+..+..+-++.++..++...+...- .+.|+++..-.--|..++..|+|.+|+..|+.+..-.|..+ -++.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALr----vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p---~~kA 82 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALR----VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP---YAKA 82 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHH----HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh---HHHH
Confidence 4556666777778888888777666443 37899999999999999999999999999999999999998 8888
Q ss_pred HHHHHHHHHHH
Q psy8368 284 EILKADLGNQQ 294 (372)
Q Consensus 284 ~l~~~~~~~~~ 294 (372)
.+.-|....++
T Consensus 83 LlA~CL~~~~D 93 (160)
T PF09613_consen 83 LLALCLYALGD 93 (160)
T ss_pred HHHHHHHHcCC
Confidence 89888765543
No 308
>KOG2053|consensus
Probab=89.90 E-value=2.3 Score=44.65 Aligned_cols=97 Identities=13% Similarity=-0.001 Sum_probs=74.9
Q ss_pred HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368 160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT 239 (372)
Q Consensus 160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p 239 (372)
-+|-.+++.|++++|. ..-+++..... ++ ...+.-+..||..++++++|...|++++. .+|
T Consensus 48 LkaLsl~r~gk~~ea~-~~Le~~~~~~~----~D----------~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~----~~P 108 (932)
T KOG2053|consen 48 LKALSLFRLGKGDEAL-KLLEALYGLKG----TD----------DLTLQFLQNVYRDLGKLDEAVHLYERANQ----KYP 108 (932)
T ss_pred HHHHHHHHhcCchhHH-HHHhhhccCCC----Cc----------hHHHHHHHHHHHHHhhhhHHHHHHHHHHh----hCC
Confidence 3567788889999888 33344443322 12 23455567899999999999999999998 888
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 240 KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 240 ~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
+ -+-++.+-.||.+-++|.+=...--+..+..|+++
T Consensus 109 ~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~ 144 (932)
T KOG2053|consen 109 S-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA 144 (932)
T ss_pred c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 8 88999999999999999887777777777888876
No 309
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=89.56 E-value=3.8 Score=28.98 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhc
Q psy8368 152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINT 188 (372)
Q Consensus 152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~ 188 (372)
++.+..+-..|..+=+.|+|.+|+.+|..|+..+...
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3566777788888888999999999999999988543
No 310
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=89.46 E-value=1.2 Score=27.25 Aligned_cols=33 Identities=9% Similarity=0.093 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHH--HHHHHhhcCCC
Q psy8368 243 KLFFVWGKALIGLQEWTSAIKH--LKTARKLAAKD 275 (372)
Q Consensus 243 ka~~r~a~a~~~l~~~e~A~~~--~~~al~l~p~~ 275 (372)
+.++-+|..+...|+|++|+.. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3566677777788888888888 44777777654
No 311
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.39 E-value=4.4 Score=37.46 Aligned_cols=55 Identities=13% Similarity=0.087 Sum_probs=47.6
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q psy8368 209 NLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKT 267 (372)
Q Consensus 209 Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~ 267 (372)
--+.-.+..+++.+|...+..++. ..|.+..+..-++.||...|+.+.|...|..
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~----~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQ----AAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHH----hCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 345667789999999999999998 8999999999999999999999887665543
No 312
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.36 E-value=6.8 Score=34.04 Aligned_cols=141 Identities=14% Similarity=0.123 Sum_probs=82.6
Q ss_pred hhHHHHhcc---CHHHHHHHHHHHHHhhhhccCCChHHHHHHHH------HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368 161 SGKNAFNDK---NIVSAVRRYRDAVKLLINTQVTNYEDQMQLEE------YLCRVYRNLMVCYNNNKQYKLTCDCASKAL 231 (372)
Q Consensus 161 ~Gn~~~~~g---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~------l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL 231 (372)
.|-.|+... +...|...|.+++..+.............+.. .-.....-+|..+...+++++|+...+.+|
T Consensus 37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l 116 (207)
T COG2976 37 FGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL 116 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 444555444 45588899999998875332211111111111 112234557788889999999999999999
Q ss_pred HhhccCCC-Cchh--HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8368 232 QFASHFAT-KDVK--LFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFS 308 (372)
Q Consensus 232 ~~~~~~~p-~~~k--a~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
. ... .+.+ +-.|+|.+...+|.+++|+..+..... ++-. +-+....+.+.-..+ .+...+..|.+.+.
T Consensus 117 ~----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~--~~~~elrGDill~kg-~k~~Ar~ay~kAl~ 187 (207)
T COG2976 117 A----QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWA--AIVAELRGDILLAKG-DKQEARAAYEKALE 187 (207)
T ss_pred c----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHH--HHHHHHhhhHHHHcC-chHHHHHHHHHHHH
Confidence 5 222 2444 567999999999999999987765421 1111 011122222333222 23456677777665
Q ss_pred CC
Q psy8368 309 SS 310 (372)
Q Consensus 309 ~~ 310 (372)
..
T Consensus 188 ~~ 189 (207)
T COG2976 188 SD 189 (207)
T ss_pred cc
Confidence 54
No 313
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=89.23 E-value=4.8 Score=29.30 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=30.4
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhh
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLIN 187 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~ 187 (372)
+.+..+-..|..+=+.|+|.+|+.+|..|++++-.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 45777778888889999999999999999998854
No 314
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=89.09 E-value=3.8 Score=29.90 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=30.6
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhc
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINT 188 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~ 188 (372)
..+..+...|..+=+.|+|.+|+.+|.+||..+...
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~ 39 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQV 39 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 456777788889999999999999999999988553
No 315
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=89.02 E-value=4.3 Score=29.33 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhc
Q psy8368 152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINT 188 (372)
Q Consensus 152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~ 188 (372)
++.+..+...|...=..|+|.+|+.+|.+|+..+-..
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 5678888889999999999999999999999988553
No 316
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.86 E-value=10 Score=32.54 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK-DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAA 273 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~-~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p 273 (372)
...+..+|.-|.+.|+++.|++.|.++.+.. ..+. ....++++-.+....+++..+..++.+|..+-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~--~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYC--TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999998622 1222 456788999999999999999999999988744
No 317
>PRK10941 hypothetical protein; Provisional
Probab=88.59 E-value=4.6 Score=37.14 Aligned_cols=76 Identities=11% Similarity=0.013 Sum_probs=61.5
Q ss_pred HHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccC
Q psy8368 158 LGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHF 237 (372)
Q Consensus 158 ~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~ 237 (372)
+.+.=..+.+.++|..|+.+-...+.+.|.. ..-+..+|.+|.+++.+..|+.+++.-++ .
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d---------------p~e~RDRGll~~qL~c~~~A~~DL~~fl~----~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPED---------------PYEIRDRGLIYAQLDCEHVALSDLSYFVE----Q 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHH----h
Confidence 3445567889999999999999999997765 35566799999999999999999999997 6
Q ss_pred CCCchhHHHHHHHHH
Q psy8368 238 ATKDVKLFFVWGKAL 252 (372)
Q Consensus 238 ~p~~~ka~~r~a~a~ 252 (372)
.|+.+.+-.-+.++.
T Consensus 245 ~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 245 CPEDPISEMIRAQIH 259 (269)
T ss_pred CCCchhHHHHHHHHH
Confidence 777777665554443
No 318
>KOG1550|consensus
Probab=88.54 E-value=8.2 Score=39.47 Aligned_cols=92 Identities=15% Similarity=0.080 Sum_probs=72.9
Q ss_pred HHhhHHHHhcc-----CHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHH
Q psy8368 159 GASGKNAFNDK-----NIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNK---QYKLTCDCASKA 230 (372)
Q Consensus 159 k~~Gn~~~~~g-----~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~---~y~~Ai~~~~~a 230 (372)
...|..|++.. ++..|+..|.+|-..-. .....++|.||..-. ++..|..++..|
T Consensus 292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-----------------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~A 354 (552)
T KOG1550|consen 292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-----------------PDAQYLLGVLYETGTKERDYRRAFEYYSLA 354 (552)
T ss_pred cHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-----------------chHHHHHHHHHHcCCccccHHHHHHHHHHH
Confidence 34677777632 67888888888876532 357778999998755 688999999999
Q ss_pred HHhhccCCCCchhHHHHHHHHHHhc----CCHHHHHHHHHHHHhhcC
Q psy8368 231 LQFASHFATKDVKLFFVWGKALIGL----QEWTSAIKHLKTARKLAA 273 (372)
Q Consensus 231 L~~~~~~~p~~~ka~~r~a~a~~~l----~~~e~A~~~~~~al~l~p 273 (372)
.+ -.+..|++++|.||..- .+...|..++++|.+..+
T Consensus 355 a~------~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 355 AK------AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN 395 (552)
T ss_pred HH------cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence 75 57889999999999753 588999999999999883
No 319
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=88.51 E-value=4.3 Score=29.47 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhh
Q psy8368 152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLIN 187 (372)
Q Consensus 152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~ 187 (372)
+..+..+...|...=..|+|.+|+.+|..||+.+-.
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 456777777888888899999999999999999855
No 320
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=88.17 E-value=4.5 Score=29.33 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhh
Q psy8368 152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLIN 187 (372)
Q Consensus 152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~ 187 (372)
++.+..+...|...=..|+|++|+.+|..||+++-.
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 456777888888889999999999999999998855
No 321
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=88.07 E-value=9.5 Score=34.13 Aligned_cols=120 Identities=13% Similarity=0.118 Sum_probs=70.6
Q ss_pred HhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhhccC-CCCchh
Q psy8368 166 FNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQY-KLTCDCASKALQFASHF-ATKDVK 243 (372)
Q Consensus 166 ~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y-~~Ai~~~~~aL~~~~~~-~p~~~k 243 (372)
|..|+|..|+..-.-||..--..|..- ....-.+.+.-..+-|....+.|+- +-.. ......+.... =|+.+.
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f---~R~~~t~vaeev~~~A~~~~~ag~~~e~~~--~~~~~~l~~~~dmpd~vr 168 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQF---RRTLANFVAEEVANAALKAASAGESVEPYF--LRVFLDLTTEWDMPDEVR 168 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccc---cCCchHHHHHHHHHHHHHHHHcCCCCChHH--HHHHHHHHhcCCCChHHH
Confidence 456889999999999998743322110 1112223344455566666666652 1111 11122211111 144444
Q ss_pred HHH--HHHHHHH---------hcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy8368 244 LFF--VWGKALI---------GLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQ 294 (372)
Q Consensus 244 a~~--r~a~a~~---------~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~ 294 (372)
|-+ -.|.+++ ..++...|+..|++|++++|+-. ++..+.++.++++.
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G----VK~~i~~l~~~lr~ 226 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG----VKKDIERLERRLKA 226 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC----hHHHHHHHHHHHhh
Confidence 444 4455552 34678899999999999998765 88888888887763
No 322
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.83 E-value=0.79 Score=25.66 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q psy8368 244 LFFVWGKALIGLQEWTSAIKHLK 266 (372)
Q Consensus 244 a~~r~a~a~~~l~~~e~A~~~~~ 266 (372)
+++.+|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45556666666666666655543
No 323
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.83 E-value=4.5 Score=38.94 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc-----cC-----CCC---------------chhHHHHHHHHHHhcCCH
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFAS-----HF-----ATK---------------DVKLFFVWGKALIGLQEW 258 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~-----~~-----~p~---------------~~ka~~r~a~a~~~l~~~ 258 (372)
+..+..++..+...|++..|...+++||=.++ .. ++. -..|++|....+...|-+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 67888899999999999999999999984432 11 111 133899999999999999
Q ss_pred HHHHHHHHHHHhhcCC-Cc
Q psy8368 259 TSAIKHLKTARKLAAK-DS 276 (372)
Q Consensus 259 e~A~~~~~~al~l~p~-~~ 276 (372)
.-|++..+-.+.+||. |+
T Consensus 120 rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred HHHHHHHHHHHhcCCCCCc
Confidence 9999999999999998 66
No 324
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.43 E-value=1.5 Score=27.23 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFAS 235 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~ 235 (372)
.+|..+|.+.+..++|.+|+.++.++|++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3677899999999999999999999998543
No 325
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=87.22 E-value=2 Score=39.22 Aligned_cols=62 Identities=6% Similarity=-0.124 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368 223 TCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG 291 (372)
Q Consensus 223 Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~ 291 (372)
|+.+|.+|+. +.|.+...|..+|..+...|+.=.|+-+|-+++-..-..+ .++..|..+-.+
T Consensus 1 A~~~Y~~A~~----l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~---~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIR----LLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFP---SARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHH----H-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--H---HHHHHHHHHHHH
T ss_pred CHHHHHHHHH----hCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHH
Confidence 6789999998 8999999999999999999999999999999998765566 777777777665
No 326
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=86.51 E-value=1.4 Score=39.27 Aligned_cols=60 Identities=12% Similarity=0.114 Sum_probs=53.2
Q ss_pred HHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc
Q psy8368 163 KNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD 241 (372)
Q Consensus 163 n~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~ 241 (372)
..+++.++...|.+.|.+|+.+.+.+ ..-+..++....|.|+++.|...++++|+ +||.+
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w---------------~~gwfR~g~~~ekag~~daAa~a~~~~L~----ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEW---------------AAGWFRLGEYTEKAGEFDAAAAAYEEVLE----LDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchh---------------hhhhhhcchhhhhcccHHHHHHHHHHHHc----CCccc
Confidence 35677899999999999999997766 67888999999999999999999999998 88774
No 327
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.04 E-value=11 Score=34.02 Aligned_cols=88 Identities=6% Similarity=-0.078 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCC--CCchhHHHHHHH
Q psy8368 173 SAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFA--TKDVKLFFVWGK 250 (372)
Q Consensus 173 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~--p~~~ka~~r~a~ 250 (372)
..+..+.+|+..+.... ...+...+...+|.-|+++|+|++|+.+++.++.....-. .-....+.++..
T Consensus 156 ~iI~lL~~A~~~f~~~~---------~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~ 226 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYG---------QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLE 226 (247)
T ss_pred HHHHHHHHHHHHHHHhc---------cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 34555555555543321 1334467788999999999999999999999986331111 013446778899
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q psy8368 251 ALIGLQEWTSAIKHLKTAR 269 (372)
Q Consensus 251 a~~~l~~~e~A~~~~~~al 269 (372)
|+..+|+.+..+...-+.+
T Consensus 227 Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 227 CAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHhCCHHHHHHHHHHHh
Confidence 9999999998887765543
No 328
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=85.84 E-value=4.8 Score=36.51 Aligned_cols=65 Identities=12% Similarity=0.039 Sum_probs=52.0
Q ss_pred HHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368 158 LGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKAL 231 (372)
Q Consensus 158 ~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL 231 (372)
..+.|..++..|+|.+|+..|+.+...+.. ..|. .+...++..+..|+.++|+.+..+..|-+.+
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~--egW~-------~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRR--EGWW-------SLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--CCcH-------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 347999999999999999999999655432 1222 2446788899999999999999999988765
No 329
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=85.75 E-value=9.6 Score=27.37 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhc
Q psy8368 152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINT 188 (372)
Q Consensus 152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~ 188 (372)
++.+..+-..|...=..|+|.+|+.+|..|+..+-..
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~ 39 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQA 39 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4566677778888888899999999999999988553
No 330
>KOG3617|consensus
Probab=85.70 E-value=25 Score=37.22 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHH----------HHHHHHHHHHHHHHHHHHHHHccC
Q psy8368 150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYED----------QMQLEEYLCRVYRNLMVCYNNNKQ 219 (372)
Q Consensus 150 ~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~----------~~~~~~l~~~l~~Nla~~~~kl~~ 219 (372)
+++.++..++..-..|-+.=++--+.+.|..|+.++..-..+-.++ ..--...+..++..+|.|++++|.
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~ 1160 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGA 1160 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence 3667777666666555555555566667888998875432111000 011122345677889999999999
Q ss_pred HHHHHHHHHHH
Q psy8368 220 YKLTCDCASKA 230 (372)
Q Consensus 220 y~~Ai~~~~~a 230 (372)
|..|-+-+.+|
T Consensus 1161 Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1161 YHAATKKFTQA 1171 (1416)
T ss_pred hHHHHHHHhhh
Confidence 99999988766
No 331
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.59 E-value=1.6 Score=42.44 Aligned_cols=62 Identities=11% Similarity=0.128 Sum_probs=46.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHH----HhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368 209 NLMVCYNNNKQYKLTCDCASKAL----QFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARK 270 (372)
Q Consensus 209 Nla~~~~kl~~y~~Ai~~~~~aL----~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~ 270 (372)
-+...+.-+|+|..|++..+..- .+.....+.++-.+|..|.||+.+++|.+|+..|...|-
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777999999998876441 011123344777899999999999999999999998873
No 332
>KOG2047|consensus
Probab=85.55 E-value=48 Score=34.25 Aligned_cols=140 Identities=14% Similarity=0.124 Sum_probs=88.9
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc---------------------------CCChHH--HHHH-----H
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ---------------------------VTNYED--QMQL-----E 200 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~---------------------------~~~~~~--~~~~-----~ 200 (372)
..-+...+.-|.+.|.|++|-..|.+|++..-... ..+.+. .-++ .
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 45566788999999999999999999986531110 001111 1111 1
Q ss_pred HHH--HHHHHHHHH--------------HHHHccCHHHHHHHHHHHHHhhccCCCCc-----hhHHHHHHHHHHhcCCHH
Q psy8368 201 EYL--CRVYRNLMV--------------CYNNNKQYKLTCDCASKALQFASHFATKD-----VKLFFVWGKALIGLQEWT 259 (372)
Q Consensus 201 ~l~--~~l~~Nla~--------------~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~-----~ka~~r~a~a~~~l~~~e 259 (372)
.++ ..++.|--. +-+..+++.+-+..|..|++ ..+|.. ...|...|+.|...|+.+
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~---~vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVK---TVDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHH---ccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 111 112222111 12224678889999999997 677763 346788999999999999
Q ss_pred HHHHHHHHHHhhcCCCc-cHHHHHHHHHHHHHHHHHHHH
Q psy8368 260 SAIKHLKTARKLAAKDS-VRAEIDKEILKADLGNQQYQK 297 (372)
Q Consensus 260 ~A~~~~~~al~l~p~~~-~~~~~~~~l~~~~~~~~~~~~ 297 (372)
.|...|.+|.+..-... -.+.++-.-+....+.+..+.
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~ 443 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEA 443 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHH
Confidence 99999999999865432 223666666665555555443
No 333
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=85.23 E-value=12 Score=26.98 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhc
Q psy8368 152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINT 188 (372)
Q Consensus 152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~ 188 (372)
+..+..+...|..+=..|++.+|+.+|..|+..+...
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~ 41 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLEG 41 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4667777888888888999999999999999988553
No 334
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.91 E-value=13 Score=28.02 Aligned_cols=49 Identities=8% Similarity=-0.183 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc--hhHHHHHHHHHHhcC
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD--VKLFFVWGKALIGLQ 256 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~--~ka~~r~a~a~~~l~ 256 (372)
....+.+|.+++..|+|++|+..+-.+++ .++++ -.+.-.+-.++..+|
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~----~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVR----RDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHC----C-TTCCCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCccccccHHHHHHHHHHHHcC
Confidence 57888999999999999999999999997 66664 333333444444444
No 335
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=84.41 E-value=8.5 Score=37.08 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHH---ccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhc
Q psy8368 205 RVYRNLMVCYNN---NKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGL---------QEWTSAIKHLKTARKLA 272 (372)
Q Consensus 205 ~l~~Nla~~~~k---l~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l---------~~~e~A~~~~~~al~l~ 272 (372)
.+....|.++.+ .|+.++|+..+..++. ...+.++..+.-.|.+|-.+ ..++.|+..|.++.+++
T Consensus 180 ~i~~~yafALnRrn~~gdre~Al~il~~~l~---~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 180 NIKFQYAFALNRRNKPGDREKALQILLPVLE---SDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred HHHHHHHHHHhhcccCCCHHHHHHHHHHHHh---ccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 345567777777 9999999999999775 36667888888888888643 24789999999999999
Q ss_pred CCC
Q psy8368 273 AKD 275 (372)
Q Consensus 273 p~~ 275 (372)
|+.
T Consensus 257 ~~~ 259 (374)
T PF13281_consen 257 PDY 259 (374)
T ss_pred ccc
Confidence 864
No 336
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.39 E-value=48 Score=34.34 Aligned_cols=114 Identities=16% Similarity=0.127 Sum_probs=83.6
Q ss_pred HHHHHHHHhhHHHH-hccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAF-NDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKAL 231 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~-~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL 231 (372)
..+......|+.++ .-.+++.|..+..+++.+.... .+.+++..+.+-++.+|.+.+... |+..+++++
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~---------~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I 126 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERH---------RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAI 126 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---------chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH
Confidence 45677777888888 5678999999999999887541 233444566666789999888877 999999999
Q ss_pred HhhccCCCCchhHHHHHHHHHH--hcCCHHHHHHHHHHHHhhc--CCCc
Q psy8368 232 QFASHFATKDVKLFFVWGKALI--GLQEWTSAIKHLKTARKLA--AKDS 276 (372)
Q Consensus 232 ~~~~~~~p~~~ka~~r~a~a~~--~l~~~e~A~~~~~~al~l~--p~~~ 276 (372)
+..+...-..+.-.||+-++.. ..+++..|++.++....+. ..+.
T Consensus 127 ~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 127 EDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 8554443345556666654422 2379999999999999887 3554
No 337
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.26 E-value=1.5 Score=24.47 Aligned_cols=24 Identities=8% Similarity=-0.157 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCAS 228 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~ 228 (372)
.++.++|..+..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 357899999999999999998875
No 338
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=83.75 E-value=19 Score=36.43 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHH-HHHHHHhhccCCCCchhHHHHH------HHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDC-ASKALQFASHFATKDVKLFFVW------GKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~-~~~aL~~~~~~~p~~~ka~~r~------a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
..++.|++.++...+....++.. +..++. ..|+|......+ ++....+++..++..++.++..+.|.++
T Consensus 101 ~~~~~~L~~ale~~~~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~ 176 (620)
T COG3914 101 CPAVQNLAAALELDGLQFLALADISEIAEW----LSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYP 176 (620)
T ss_pred chHHHHHHHHHHHhhhHHHHHHHHHHHHHh----cCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhh
Confidence 57899999888877765555554 444776 778887766665 8888899999999999999999999998
Q ss_pred cHHHHHHHHHHHH
Q psy8368 277 VRAEIDKEILKAD 289 (372)
Q Consensus 277 ~~~~~~~~l~~~~ 289 (372)
.+...+.-..
T Consensus 177 ---~~~~~~~~~r 186 (620)
T COG3914 177 ---RVLGALMTAR 186 (620)
T ss_pred ---hhHhHHHHHH
Confidence 6655555443
No 339
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=83.49 E-value=19 Score=34.72 Aligned_cols=121 Identities=12% Similarity=0.139 Sum_probs=81.8
Q ss_pred hhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC
Q psy8368 161 SGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK 240 (372)
Q Consensus 161 ~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~ 240 (372)
.+..+|+.|+..++......+-+..++ -.++..|.....-+-++.-.+++-++. .+.|+
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePH--------------------P~ia~lY~~ar~gdta~dRlkRa~~L~-slk~n 327 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPH--------------------PDIALLYVRARSGDTALDRLKRAKKLE-SLKPN 327 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCC--------------------hHHHHHHHHhcCCCcHHHHHHHHHHHH-hcCcc
Confidence 445556666666666655555554333 246677777777677777777665422 57899
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8368 241 DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKM 306 (372)
Q Consensus 241 ~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 306 (372)
|....+-++.+-+.-|+|..|...-+.+...+|... +.-++..+...---...+.++...+.
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres----~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES----AYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh----HHHHHHHHHhhccCchHHHHHHHHHH
Confidence 999999999999999999999999999999999865 55555555544312223344444443
No 340
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.41 E-value=14 Score=32.87 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=55.6
Q ss_pred HHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 212 VCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 212 ~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
.-+++-+...+||.....-++ .+|.+.-...-+-+.|.-.|+|+.|+.-++-+-+++|++.
T Consensus 9 seLL~~~sL~dai~~a~~qVk----akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVK----AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHh----cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 356778899999999999998 8899888888888999999999999999999999999998
No 341
>KOG2300|consensus
Probab=83.27 E-value=40 Score=33.56 Aligned_cols=123 Identities=12% Similarity=0.135 Sum_probs=82.3
Q ss_pred hccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC------
Q psy8368 167 NDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK------ 240 (372)
Q Consensus 167 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~------ 240 (372)
-+|-|++|.++-.++|......+..+- ...-+.-+...++-++..|-+-.|+|.+|+.....+.+++... |.
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~-~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~-p~~~Llr~ 364 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADL-MSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRF-PTPLLLRA 364 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccc-hhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC-CchHHHHH
Confidence 456777888877888877655433221 3345556667888899999999999999998887777654322 33
Q ss_pred -chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368 241 -DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG 291 (372)
Q Consensus 241 -~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~ 291 (372)
.+..++-+|.-....+.|+.|...|..|.++-..-...+-+.-.++-..-+
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~ 416 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLR 416 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH
Confidence 344566667777777888999999998888765543333444444444433
No 342
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.24 E-value=24 Score=36.59 Aligned_cols=112 Identities=12% Similarity=0.062 Sum_probs=84.5
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc-----CCC------hHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ-----VTN------YEDQMQLEEYLCRVYRNLMVCYNNNKQYKLT 223 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~-----~~~------~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~A 223 (372)
+-.+.--|-.+...+....|.+.+.+|++.+.... .+. .....-...++..++..++.|.+-+++|..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 45566667777778888899999999998886643 000 1123345566778888899999999999999
Q ss_pred HHHHHHHHHhhccCC-----CCchhHHHHHHHHHHhcCCHHHHHHHHH
Q psy8368 224 CDCASKALQFASHFA-----TKDVKLFFVWGKALIGLQEWTSAIKHLK 266 (372)
Q Consensus 224 i~~~~~aL~~~~~~~-----p~~~ka~~r~a~a~~~l~~~e~A~~~~~ 266 (372)
......+........ .-.+..+|-.|..+...|+.+.|+..|.
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 999998876332221 1257789999999999999999999998
No 343
>KOG1464|consensus
Probab=82.71 E-value=20 Score=32.90 Aligned_cols=129 Identities=17% Similarity=0.091 Sum_probs=79.9
Q ss_pred HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368 160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT 239 (372)
Q Consensus 160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p 239 (372)
..|+.+|..+.|.+--...++.-..+... +.++.......+..+|.---+.|...++..+-...|.++|.+..++..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~e---dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTE---DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccc---cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 46778888877776655555444443322 112222222333455555567788888888888899999975544422
Q ss_pred CchhHHHHH--HHHHHhcCCHHHHHHHHHHHHhhc--CCCccHHHHHHHHHHHHHH
Q psy8368 240 KDVKLFFVW--GKALIGLQEWTSAIKHLKTARKLA--AKDSVRAEIDKEILKADLG 291 (372)
Q Consensus 240 ~~~ka~~r~--a~a~~~l~~~e~A~~~~~~al~l~--p~~~~~~~~~~~l~~~~~~ 291 (372)
.-.-...|- |+.|+.-|+|++|..+|-.|++-- ..++++..+.+.|-.+...
T Consensus 227 PlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANML 282 (440)
T KOG1464|consen 227 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANML 282 (440)
T ss_pred hHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHH
Confidence 222233333 678899999999999999999853 3444555666666554443
No 344
>KOG2610|consensus
Probab=82.54 E-value=7.2 Score=36.81 Aligned_cols=53 Identities=15% Similarity=-0.050 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHH
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSA 261 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A 261 (372)
-++.-.|-|+...|-|++|.+..+++|+ +++.+.-|..-.+-++...+++.++
T Consensus 176 Yv~GmyaFgL~E~g~y~dAEk~A~ralq----iN~~D~Wa~Ha~aHVlem~~r~Keg 228 (491)
T KOG2610|consen 176 YVHGMYAFGLEECGIYDDAEKQADRALQ----INRFDCWASHAKAHVLEMNGRHKEG 228 (491)
T ss_pred HHHHHHHhhHHHhccchhHHHHHHhhcc----CCCcchHHHHHHHHHHHhcchhhhH
Confidence 3445577888899999999999999997 7776655444444444444444333
No 345
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=82.50 E-value=17 Score=26.68 Aligned_cols=66 Identities=17% Similarity=0.026 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc---C---CChHHHHHHHHHHHHHHHHHHHHHHHc
Q psy8368 152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ---V---TNYEDQMQLEEYLCRVYRNLMVCYNNN 217 (372)
Q Consensus 152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~---~---~~~~~~~~~~~l~~~l~~Nla~~~~kl 217 (372)
.+.|..+.+.|-.+=..|+.++|+.+|++|+..+.... . ...+.+.....++...-.|++.+-.++
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL 76 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL 76 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677777788888888999999999999999885531 1 123456666666666666666655444
No 346
>KOG1497|consensus
Probab=82.30 E-value=24 Score=33.11 Aligned_cols=91 Identities=12% Similarity=0.145 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC------Cchh--HHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q psy8368 200 EEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT------KDVK--LFFVWGKALIGLQEWTSAIKHLKTARK- 270 (372)
Q Consensus 200 ~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p------~~~k--a~~r~a~a~~~l~~~e~A~~~~~~al~- 270 (372)
.+....+...+|..|-+-++|..|.....-+- ++. .+.| .+.|+|.+|+..++-.+|..+..++--
T Consensus 99 eEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~-----~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil 173 (399)
T KOG1497|consen 99 EEQVASIRLHLASIYEKEQNWRDAAQVLVGIP-----LDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASIL 173 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccC-----cccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 35557899999999999999999887665332 322 1223 467899999999999999999999854
Q ss_pred -hcCCCccHHHHHHHHHHHHHHHHHHHHH
Q psy8368 271 -LAAKDSVRAEIDKEILKADLGNQQYQKE 298 (372)
Q Consensus 271 -l~p~~~~~~~~~~~l~~~~~~~~~~~~~ 298 (372)
.+..|. .+.-++..|+.+.-+++.+
T Consensus 174 ~a~~~Ne---~Lqie~kvc~ARvlD~krk 199 (399)
T KOG1497|consen 174 QAESSNE---QLQIEYKVCYARVLDYKRK 199 (399)
T ss_pred hhcccCH---HHHHHHHHHHHHHHHHHHH
Confidence 355777 8888888888777666543
No 347
>KOG2047|consensus
Probab=81.34 E-value=11 Score=38.51 Aligned_cols=105 Identities=10% Similarity=0.071 Sum_probs=72.5
Q ss_pred HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc
Q psy8368 157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH 236 (372)
Q Consensus 157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~ 236 (372)
-.-+.|+.+-...-|++|.+.|.+++.+++... ..++ -..|+-....-+.-...+.|...+++||+ .
T Consensus 513 ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~---------v~di-W~tYLtkfi~rygg~klEraRdLFEqaL~---~ 579 (835)
T KOG2047|consen 513 IIINYAMFLEEHKYFEESFKAYERGISLFKWPN---------VYDI-WNTYLTKFIKRYGGTKLERARDLFEQALD---G 579 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc---------HHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHh---c
Confidence 334667777777889999999999999986531 1112 22344444445555678999999999998 4
Q ss_pred CCCCchhHHHH-HHHHHHhcCCHHHHHHHHHHHHhhcCC
Q psy8368 237 FATKDVKLFFV-WGKALIGLQEWTSAIKHLKTARKLAAK 274 (372)
Q Consensus 237 ~~p~~~ka~~r-~a~a~~~l~~~e~A~~~~~~al~l~p~ 274 (372)
+.|..+|..|- .|+.-..-|--..|+..|++|-..-+.
T Consensus 580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~ 618 (835)
T KOG2047|consen 580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKE 618 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH
Confidence 55778886664 355556667778888888887655443
No 348
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=81.17 E-value=20 Score=34.93 Aligned_cols=87 Identities=10% Similarity=0.060 Sum_probs=59.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhhcc---C-CCCch----------hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 211 MVCYNNNKQYKLTCDCASKALQFASH---F-ATKDV----------KLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 211 a~~~~kl~~y~~Ai~~~~~aL~~~~~---~-~p~~~----------ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
|..+++.+.|..|..-+..+|++++. + .|..+ -.--.+..||+.+++.+-|+....+.+-++|.+.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 44455667777777777777764421 1 11111 1344689999999999999999999999999887
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368 277 VRAEIDKEILKADLGNQQYQKETK 300 (372)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~~~~~~~ 300 (372)
--+-..+.|.+++..|.++.+
T Consensus 263 ---rnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 263 ---RNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHH
Confidence 444445556666666666654
No 349
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=80.86 E-value=27 Score=33.75 Aligned_cols=70 Identities=19% Similarity=0.034 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q psy8368 201 EYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD 275 (372)
Q Consensus 201 ~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~ 275 (372)
..+..++.-.|...+. -+...|..+..++++ +.|+.+-+-.--+++++..|+.-++-..++.+-+.+|.-
T Consensus 227 R~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~K----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 227 RSRAVLLTAKAMSLLD-ADPASARDDALEANK----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred HHHHHHHHHHHHHHhc-CChHHHHHHHHHHhh----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 3445555555555543 458899999999998 999999999999999999999999999999999998863
No 350
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=80.80 E-value=19 Score=28.28 Aligned_cols=84 Identities=13% Similarity=0.064 Sum_probs=57.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhhccCCCCch---hHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhhcCCC
Q psy8368 210 LMVCYNNNKQYKLTCDCASKALQFASHFATKDV---KLFFVWGKALIGLQE-----------WTSAIKHLKTARKLAAKD 275 (372)
Q Consensus 210 la~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~---ka~~r~a~a~~~l~~-----------~e~A~~~~~~al~l~p~~ 275 (372)
+|.-++..|++-+|+...+..+. ..+++. -.+..-|.++..+.. +-.|++++.++..+.|.-
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~----~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLIS----RHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHH----HccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence 56778999999999999999996 555544 334445777765542 345899999999999987
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Q psy8368 276 SVRAEIDKEILKADLGNQQYQKETK 300 (372)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~~~~~~~ 300 (372)
+ ....+++.-.....-|++..+
T Consensus 78 A---~~L~~la~~l~s~~~Ykk~v~ 99 (111)
T PF04781_consen 78 A---HSLFELASQLGSVKYYKKAVK 99 (111)
T ss_pred H---HHHHHHHHHhhhHHHHHHHHH
Confidence 6 666566555444444444433
No 351
>KOG2581|consensus
Probab=80.64 E-value=7.4 Score=37.55 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
..+.+-+-.||+.-+.|+.|-....++.- +....+ .+.-+|..|++..-..+|+.|.++|..|+...|++.
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~--pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVY--PEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccC--ccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 34455566788888999999888887762 112223 344466789999999999999999999999999865
No 352
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.52 E-value=19 Score=29.93 Aligned_cols=82 Identities=10% Similarity=-0.064 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q psy8368 206 VYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEI 285 (372)
Q Consensus 206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l 285 (372)
.+..+..+-+...+..++....+. |+ .+.|++...-.--|..|+..|+|.+|+..|+....-.+..+ -.+..+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdA-Lr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p---~~kAL~ 84 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDA-LR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP---YGKALL 84 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH-HH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch---HHHHHH
Confidence 334444455557777776665553 33 47899999999999999999999999999999888888877 778888
Q ss_pred HHHHHHHHH
Q psy8368 286 LKADLGNQQ 294 (372)
Q Consensus 286 ~~~~~~~~~ 294 (372)
.-|...+++
T Consensus 85 A~CL~al~D 93 (153)
T TIGR02561 85 ALCLNAKGD 93 (153)
T ss_pred HHHHHhcCC
Confidence 888766543
No 353
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=80.10 E-value=3.9 Score=29.71 Aligned_cols=35 Identities=31% Similarity=0.334 Sum_probs=30.1
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhh
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLIN 187 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~ 187 (372)
+.+..+...|...=..|+|++|+..|..|++++-.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 56677777888888899999999999999999865
No 354
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=79.69 E-value=37 Score=32.83 Aligned_cols=104 Identities=12% Similarity=0.034 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHh---cCCHHHHHHHHHHHH-hhcCCCccHH
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIG---LQEWTSAIKHLKTAR-KLAAKDSVRA 279 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~---l~~~e~A~~~~~~al-~l~p~~~~~~ 279 (372)
..+..|+-.+|...++|+.-+...+..-.+....-++.....+..|.|+-. .|+.++|+..+..++ ...+.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~--- 217 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP--- 217 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh---
Confidence 345668889999999999999988866542111134466678888999988 999999999999955 4456667
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHhhccCC
Q psy8368 280 EIDKEILKADLGNQQY--------QKETKARCMKMFSSS 310 (372)
Q Consensus 280 ~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~ 310 (372)
+....++++.+.+-.. ..+.-..|.+.|...
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 8888888887766432 123335555655554
No 355
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.18 E-value=3.4 Score=26.59 Aligned_cols=26 Identities=8% Similarity=0.059 Sum_probs=24.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 207 YRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 207 ~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
.+++|.+|+.+|+++.|....++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36899999999999999999999995
No 356
>KOG1839|consensus
Probab=79.08 E-value=19 Score=39.84 Aligned_cols=135 Identities=17% Similarity=0.111 Sum_probs=96.3
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
..+....+.|.....++.|..|.+ ..+++.++... ...++.-...+|.-+|..+.+++++++|+..+.++.-
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v-------~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNV-------MGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACI 1001 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHh-------hhhcchhHHHHHHHHHHHHhhhcchHHHHHhccccee
Confidence 456777788888888899998888 77777766421 1223334478899999999999999999999999874
Q ss_pred hhcc----CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----CCCccHHHHHHHHHHHHHHHHHH
Q psy8368 233 FASH----FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA-----AKDSVRAEIDKEILKADLGNQQY 295 (372)
Q Consensus 233 ~~~~----~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~-----p~~~~~~~~~~~l~~~~~~~~~~ 295 (372)
+.+. -.|+...+|-+++......++...|+..+.+++.+. |+.+..+.+...+..+..-+.+.
T Consensus 1002 i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~ 1073 (1236)
T KOG1839|consen 1002 ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEA 1073 (1236)
T ss_pred eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHH
Confidence 3221 235567789999999999999999999999998763 33332225555555554443333
No 357
>KOG1550|consensus
Probab=77.73 E-value=11 Score=38.63 Aligned_cols=102 Identities=15% Similarity=0.089 Sum_probs=72.9
Q ss_pred HHHHHHHhhHHHHh-----ccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHcc-----CHHHH
Q psy8368 154 RAQELGASGKNAFN-----DKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNK-----QYKLT 223 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~-----~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~-----~y~~A 223 (372)
.+...-..|..++. ..+.+.|+.+|..|...+.... ........+.+|.||.+-. ++..|
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a----------~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A 312 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA----------TKGLPPAQYGLGRLYLQGLGVEKIDYEKA 312 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH----------hhcCCccccHHHHHHhcCCCCccccHHHH
Confidence 34455556666653 3589999999998887311110 0001345678999999843 78889
Q ss_pred HHHHHHHHHhhccCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHHHHhh
Q psy8368 224 CDCASKALQFASHFATKDVKLFFVWGKALIGLQ---EWTSAIKHLKTARKL 271 (372)
Q Consensus 224 i~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~---~~e~A~~~~~~al~l 271 (372)
+.++.++-. -.++.+.|++|.+|..-. ++..|..+|..|.+.
T Consensus 313 ~~~~~~aA~------~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~ 357 (552)
T KOG1550|consen 313 LKLYTKAAE------LGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA 357 (552)
T ss_pred HHHHHHHHh------cCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc
Confidence 999999975 468899999999998766 678999999998754
No 358
>KOG1310|consensus
Probab=77.62 E-value=7.4 Score=38.87 Aligned_cols=76 Identities=14% Similarity=0.090 Sum_probs=64.3
Q ss_pred ccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhc---CCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy8368 217 NKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGL---QEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQ 293 (372)
Q Consensus 217 l~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l---~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~ 293 (372)
...+..|+.++.+++. .-|.....|.++|.++++. |+--.|+.+...|++++|... .++..|.++...+.
T Consensus 387 ~~~~~~~i~~~s~a~q----~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~---kah~~la~aL~el~ 459 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQ----YVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQ---KAHFRLARALNELT 459 (758)
T ss_pred hHHHHHHHHHHHHHhh----hccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHH---HHHHHHHHHHHHHh
Confidence 3567889999999997 7788999999999999885 577889999999999999988 88888888887777
Q ss_pred HHHHHH
Q psy8368 294 QYQKET 299 (372)
Q Consensus 294 ~~~~~~ 299 (372)
.+.++.
T Consensus 460 r~~eal 465 (758)
T KOG1310|consen 460 RYLEAL 465 (758)
T ss_pred hHHHhh
Confidence 776654
No 359
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=77.50 E-value=14 Score=26.84 Aligned_cols=15 Identities=20% Similarity=0.096 Sum_probs=8.6
Q ss_pred HHHHHHHHhhcCCCc
Q psy8368 262 IKHLKTARKLAAKDS 276 (372)
Q Consensus 262 ~~~~~~al~l~p~~~ 276 (372)
++.|.+++...|+++
T Consensus 33 Ie~L~q~~~~~pD~~ 47 (75)
T cd02682 33 IEVLSQIVKNYPDSP 47 (75)
T ss_pred HHHHHHHHHhCCChH
Confidence 344445556667766
No 360
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.39 E-value=42 Score=28.21 Aligned_cols=113 Identities=8% Similarity=-0.224 Sum_probs=76.3
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~ 233 (372)
....+.+........++..++...+.-.--+-|.. ..+-.--|..++..|+|.+|+..++.+..
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~---------------~e~~~~~~~l~i~r~~w~dA~rlLr~l~~- 72 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEF---------------PELDLFDGWLHIVRGDWDDALRLLRELEE- 72 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCc---------------hHHHHHHHHHHHHhCCHHHHHHHHHHHhc-
Confidence 45667777778888888888877775433333433 34555568889999999999999999886
Q ss_pred hccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy8368 234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADL 290 (372)
Q Consensus 234 ~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~ 290 (372)
-.|..+-+---++.|+..+++.+= ..+-..+++..+ |+ .+...+..+..
T Consensus 73 ---~~~~~p~~kALlA~CL~~~~D~~W-r~~A~evle~~~-d~---~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 73 ---RAPGFPYAKALLALCLYALGDPSW-RRYADEVLESGA-DP---DARALVRALLA 121 (160)
T ss_pred ---cCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHhcCC-Ch---HHHHHHHHHHH
Confidence 777777677778889999886542 222334555544 45 45555554443
No 361
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=77.09 E-value=9.8 Score=34.61 Aligned_cols=62 Identities=19% Similarity=0.066 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHH
Q psy8368 174 AVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALI 253 (372)
Q Consensus 174 A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~ 253 (372)
|..+|.+|+.++|.. ...|+.+|..+...+++-.|+-+|-+++- .......|.-++...+.
T Consensus 1 A~~~Y~~A~~l~P~~---------------G~p~nQLAvl~~~~~~~l~avy~y~Rsl~----~~~Pf~~A~~NL~~lf~ 61 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN---------------GNPYNQLAVLASYQGDDLDAVYYYIRSLA----VRIPFPSARENLQKLFE 61 (278)
T ss_dssp HHHHHHHHHHH-TTB---------------SHHHHHHHHHHHHTT-HHHHHHHHHHHHS----SSB--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC---------------CCcccchhhhhccccchHHHHHHHHHHHh----cCCCcHHHHHHHHHHHH
Confidence 788999999999887 57899999999999999999999999994 33335667777777776
Q ss_pred h
Q psy8368 254 G 254 (372)
Q Consensus 254 ~ 254 (372)
.
T Consensus 62 ~ 62 (278)
T PF10373_consen 62 K 62 (278)
T ss_dssp H
T ss_pred H
Confidence 6
No 362
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=76.86 E-value=13 Score=30.50 Aligned_cols=46 Identities=9% Similarity=-0.041 Sum_probs=22.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcC
Q psy8368 207 YRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQ 256 (372)
Q Consensus 207 ~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~ 256 (372)
...+|...+..|+|.-|+..++.++. .+|+|..|..-++.+|..++
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~----adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVF----ADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH----H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554 55555555555555555444
No 363
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=76.46 E-value=28 Score=35.28 Aligned_cols=73 Identities=12% Similarity=0.008 Sum_probs=60.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHH-HHhhcCCCccHHHHHHHHHHH
Q psy8368 210 LMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKT-ARKLAAKDSVRAEIDKEILKA 288 (372)
Q Consensus 210 la~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~-al~l~p~~~~~~~~~~~l~~~ 288 (372)
++..+..++....+.-....++. .+|++..++.++|.+....|....+...+.. +....|+|. +....+-.+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~ 145 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLS----VNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNA---EFLGHLIRF 145 (620)
T ss_pred HHhhccccccchhHHHHHhhhHh----cCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchH---HHHhhHHHH
Confidence 67788888999888888888997 9999999999999999888877777666666 999999999 777766333
Q ss_pred H
Q psy8368 289 D 289 (372)
Q Consensus 289 ~ 289 (372)
.
T Consensus 146 ~ 146 (620)
T COG3914 146 Y 146 (620)
T ss_pred H
Confidence 3
No 364
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=76.36 E-value=62 Score=29.61 Aligned_cols=107 Identities=18% Similarity=0.099 Sum_probs=76.5
Q ss_pred HHHHHHhhHHHHh----ccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHc-----c--CHHHH
Q psy8368 155 AQELGASGKNAFN----DKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNN-----K--QYKLT 223 (372)
Q Consensus 155 ~~~~k~~Gn~~~~----~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl-----~--~y~~A 223 (372)
+......|..++. ..++.+|...|.+|...-.... .....+++.+|..- - +...|
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a--------------~~~~~~l~~~~~~g~~~~~~~~~~~~A 174 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA--------------ALAMYRLGLAYLSGLQALAVAYDDKKA 174 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH--------------HHHHHHHHHHHHcChhhhcccHHHHhH
Confidence 3456667777776 5589999999999987632110 23466777777653 1 23478
Q ss_pred HHHHHHHHHhhccCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Q psy8368 224 CDCASKALQFASHFATKDVKLFFVWGKALIG----LQEWTSAIKHLKTARKLAAKDSVRAEIDKEIL 286 (372)
Q Consensus 224 i~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~----l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~ 286 (372)
+..+.++-. -.+..+.+++|.+|.. ..++.+|...|.+|.+... . .....+.
T Consensus 175 ~~~~~~aa~------~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~---~a~~~~~ 230 (292)
T COG0790 175 LYLYRKAAE------LGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--G---AACYNLG 230 (292)
T ss_pred HHHHHHHHH------hcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--H---HHHHHHH
Confidence 888888875 2388999999998854 4489999999999999877 4 4555555
No 365
>KOG3617|consensus
Probab=75.81 E-value=17 Score=38.40 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhcc-----------------CCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASH-----------------FATKDVKLFFVWGKALIGLQEWTSAIKHLKT 267 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~-----------------~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~ 267 (372)
++|.=.|+..-..|+.+.|+.+|..|-..+.. ....+.-|.|.+|+-|...|++.+|+..|-+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56777788888889999999998887653321 1345667999999999999999999988877
Q ss_pred HHhh
Q psy8368 268 ARKL 271 (372)
Q Consensus 268 al~l 271 (372)
|..+
T Consensus 993 Aqaf 996 (1416)
T KOG3617|consen 993 AQAF 996 (1416)
T ss_pred HHHH
Confidence 7543
No 366
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=75.76 E-value=62 Score=31.35 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=45.6
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH--ccCHHHHHHHHH
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN--NKQYKLTCDCAS 228 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k--l~~y~~Ai~~~~ 228 (372)
.......+..+|+.++|..|...|..++...... + ..-...++.+++.||.. .-+|.+|..+.+
T Consensus 130 ~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~-----~-----~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 130 GNTEQGYARRAINAFDYLFAHARLETLLRRLLSA-----V-----NHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhcccCh-----h-----hhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 4555567889999999999999999998763221 0 01125667777777764 557888888887
No 367
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.12 E-value=27 Score=37.19 Aligned_cols=87 Identities=13% Similarity=-0.051 Sum_probs=68.5
Q ss_pred HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC
Q psy8368 160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT 239 (372)
Q Consensus 160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p 239 (372)
-.|.....+|+++.|...-+.++..++..... .++.++.++|.+..-.|+|.+|+.+...+.+.+...+.
T Consensus 463 L~a~val~~~~~e~a~~lar~al~~L~~~~~~----------~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~ 532 (894)
T COG2909 463 LRAQVALNRGDPEEAEDLARLALVQLPEAAYR----------SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV 532 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccccch----------hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc
Confidence 35777788999999999999999998765322 23789999999999999999999999999985544443
Q ss_pred C--chhHHHHHHHHHHhcC
Q psy8368 240 K--DVKLFFVWGKALIGLQ 256 (372)
Q Consensus 240 ~--~~ka~~r~a~a~~~l~ 256 (372)
- ..-+.+..+.++...|
T Consensus 533 ~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 533 YHLALWSLLQQSEILEAQG 551 (894)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3 3335666788888888
No 368
>KOG1839|consensus
Probab=73.83 E-value=43 Score=37.16 Aligned_cols=137 Identities=15% Similarity=0.071 Sum_probs=96.2
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
+.+.+++..+..+.+.+++++|+..-.+|.-+.......+... ...-|.|++...+..++...|+..+.+++.
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~-------t~~~y~nlal~~f~~~~~~~al~~~~ra~~ 1043 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN-------TKLAYGNLALYEFAVKNLSGALKSLNRALK 1043 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH-------HHHHhhHHHHHHHhccCccchhhhHHHHHH
Confidence 3567888899999999999999998888876543322211111 146788999999999999999999998886
Q ss_pred hhc----cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-----CCccHHHHHHHHHHHHHHHHHHH
Q psy8368 233 FAS----HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAA-----KDSVRAEIDKEILKADLGNQQYQ 296 (372)
Q Consensus 233 ~~~----~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p-----~~~~~~~~~~~l~~~~~~~~~~~ 296 (372)
... ...|.-+-...+++..+..+++++.|+.+++.|+++.- .....+.....++++....+..+
T Consensus 1044 l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr 1116 (1236)
T KOG1839|consen 1044 LKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFR 1116 (1236)
T ss_pred hhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHH
Confidence 432 12455555667889999999999999999999998653 22122245555555555544444
No 369
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.39 E-value=63 Score=28.29 Aligned_cols=56 Identities=13% Similarity=0.149 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHH
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSA 261 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A 261 (372)
.+..-+|..|. ..+..+|+..+.++|+....-+.-|+..+.-+|.+|..+++++.|
T Consensus 142 elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 142 ELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34455555555 456666666666666632222222566666666667776666665
No 370
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=72.75 E-value=33 Score=31.48 Aligned_cols=89 Identities=19% Similarity=0.174 Sum_probs=64.5
Q ss_pred hhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhhcc
Q psy8368 161 SGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN----NKQYKLTCDCASKALQFASH 236 (372)
Q Consensus 161 ~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k----l~~y~~Ai~~~~~aL~~~~~ 236 (372)
.+...+..+.|..|+..|..+-..-. .....+++.+|.. ..++.+|+.++..+.
T Consensus 47 ~~~~~~~~~~~~~a~~~~~~a~~~~~-----------------~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a----- 104 (292)
T COG0790 47 NGAGSAYPPDYAKALKSYEKAAELGD-----------------AAALALLGQMYGAGKGVSRDKTKAADWYRCAA----- 104 (292)
T ss_pred ccccccccccHHHHHHHHHHhhhcCC-----------------hHHHHHHHHHHHhccCccccHHHHHHHHHHHh-----
Confidence 44444566778888888877765210 2456677777775 346888888888664
Q ss_pred CCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhhc
Q psy8368 237 FATKDVKLFFVWGKALIG----LQEWTSAIKHLKTARKLA 272 (372)
Q Consensus 237 ~~p~~~ka~~r~a~a~~~----l~~~e~A~~~~~~al~l~ 272 (372)
+..++.+.+++|..|.. ..++.+|..+|.+|.+..
T Consensus 105 -~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 105 -ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG 143 (292)
T ss_pred -hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC
Confidence 46788899999999887 458899999999998873
No 371
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.71 E-value=9.4 Score=35.32 Aligned_cols=51 Identities=16% Similarity=0.059 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy8368 242 VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQY 295 (372)
Q Consensus 242 ~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~ 295 (372)
.+.+...+.+|...|.+.+|++..++++.++|-+. ...+.|..+...+++.
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e---~~nk~lm~~la~~gD~ 329 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSE---QDNKGLMASLATLGDE 329 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhh---HHHHHHHHHHHHhccc
Confidence 35667789999999999999999999999999998 8888888877766653
No 372
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=72.62 E-value=9.2 Score=31.48 Aligned_cols=53 Identities=9% Similarity=-0.053 Sum_probs=43.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH
Q psy8368 241 DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ 296 (372)
Q Consensus 241 ~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~ 296 (372)
-......+|+..+..|+|.-|.+.+..++..+|+|. +++.....+...+....
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~---~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNE---EARQLKADALEQLGYQS 121 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H---HHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHHHHhc
Confidence 446778888999999999999999999999999999 99999999988877653
No 373
>KOG2041|consensus
Probab=72.27 E-value=18 Score=37.47 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=22.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q psy8368 239 TKDVKLFFVWGKALIGLQEWTSAIKHLKT 267 (372)
Q Consensus 239 p~~~ka~~r~a~a~~~l~~~e~A~~~~~~ 267 (372)
|++.+.+=.+|.++...|.-++|.+.|.+
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 67777777788888888888888777654
No 374
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=71.96 E-value=12 Score=22.93 Aligned_cols=31 Identities=6% Similarity=0.032 Sum_probs=21.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHH--HHHHhhccCCCCc
Q psy8368 207 YRNLMVCYNNNKQYKLTCDCAS--KALQFASHFATKD 241 (372)
Q Consensus 207 ~~Nla~~~~kl~~y~~Ai~~~~--~aL~~~~~~~p~~ 241 (372)
+..+|.++...|+|++|+..+. -+.. +++.|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~----ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCA----LDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHH----HTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH----hcccC
Confidence 4567888999999999999954 5553 55543
No 375
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=71.88 E-value=65 Score=34.41 Aligned_cols=109 Identities=16% Similarity=0.031 Sum_probs=74.4
Q ss_pred HhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCC-
Q psy8368 160 ASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFA- 238 (372)
Q Consensus 160 ~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~- 238 (372)
-.+-.+..+.+|.+|.....++...++..... -...+......-.|.+.+..+++++|+..++.++...+...
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~------~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHS------RQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCccc------chhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 44555556677777777777766665442111 11223344444566777778999999999999997332111
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q psy8368 239 TKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK 274 (372)
Q Consensus 239 p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~ 274 (372)
-...-++...|.++.-+|++++|+.+...+.++.-.
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~ 529 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQ 529 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 114557788899999999999999999999998543
No 376
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=71.87 E-value=20 Score=32.31 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHH
Q psy8368 170 NIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN-NKQYKLTCDCASKALQ 232 (372)
Q Consensus 170 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k-l~~y~~Ai~~~~~aL~ 232 (372)
--..|...|++|+.+......+.+ .++..+.+|.+..|+. +++..+|+..+.+|+.
T Consensus 141 ~~~~a~~aY~~A~~~a~~~L~~~~-------p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 141 AAEKALEAYEEALEIAKKELPPTH-------PLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTS-------HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHhcccCCCC-------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 357889999999999876322322 3567888999988765 8999999999988875
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.32 E-value=27 Score=25.57 Aligned_cols=58 Identities=9% Similarity=0.003 Sum_probs=41.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhhccCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy8368 210 LMVCYNNNKQYKLTCDCASKALQFASHFATK---DVKLFFVWGKALIGLQEWTSAIKHLKTARKL 271 (372)
Q Consensus 210 la~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~---~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l 271 (372)
.|.-++...+..+|+...+++|+ ..++ ...++=-+..||...|.|.+++.+-.+=+.+
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~----k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALE----KITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHh----hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567889999999999997 3333 3445556788899999999988776655544
No 378
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=70.95 E-value=88 Score=30.35 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=48.2
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN--NKQYKLTCDCASKA 230 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k--l~~y~~Ai~~~~~a 230 (372)
..+......+..+|+.++|..|...+...+..++.. . . ...+.+++.+|.. .-+|.+|...++..
T Consensus 129 ~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~----~-~--------~~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 129 VFGDREWRRAKELFNRYDYGAAARILEELLRRLPGR----E-E--------YQRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch----h-h--------HHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 345677788899999999999999999988753221 0 0 3456666666654 55788888888876
Q ss_pred HH
Q psy8368 231 LQ 232 (372)
Q Consensus 231 L~ 232 (372)
+.
T Consensus 196 ~~ 197 (379)
T PF09670_consen 196 LK 197 (379)
T ss_pred HH
Confidence 64
No 379
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=70.03 E-value=69 Score=36.18 Aligned_cols=145 Identities=12% Similarity=0.055 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCC-ChHHHHHHHHHHH--HHH---------------------
Q psy8368 152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVT-NYEDQMQLEEYLC--RVY--------------------- 207 (372)
Q Consensus 152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~-~~~~~~~~~~l~~--~l~--------------------- 207 (372)
...+...|..|+.++..|++.+|+..|..|+..+....+. |-.. .++.+.+ .++
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~--alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~ 316 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLAS--ALEGIAVCLLLLSWLGMDFQIPQICSPLCPISS 316 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHH--HHHHHHHHHHHHhccCCCccccchhcccCCCCC
Confidence 4567888999999999999999999999999887443211 1100 0000000 000
Q ss_pred --------------------------------HHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC--chhHHHHHHHHHH
Q psy8368 208 --------------------------------RNLMVCYNNNKQYKLTCDCASKALQFASHFATK--DVKLFFVWGKALI 253 (372)
Q Consensus 208 --------------------------------~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~--~~ka~~r~a~a~~ 253 (372)
.+....-.-...+.+|+.+|.++.......-|. ...+..|.++.+.
T Consensus 317 ~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~ 396 (1185)
T PF08626_consen 317 STSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLV 396 (1185)
T ss_pred ccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHH
Confidence 000111111234788899999887422223344 5678899999888
Q ss_pred hcC--------------------CHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHHHHHHHHHHHH
Q psy8368 254 GLQ--------------------EWTSAIKHLKTARKLAAKDS---VRAEIDKEILKADLGNQQYQKE 298 (372)
Q Consensus 254 ~l~--------------------~~e~A~~~~~~al~l~p~~~---~~~~~~~~l~~~~~~~~~~~~~ 298 (372)
... .-.++...+.+|+.+...+- -+-.+...++.+...++-.+++
T Consensus 397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~ 464 (1185)
T PF08626_consen 397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKK 464 (1185)
T ss_pred HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHH
Confidence 888 78888999999988765432 1123555566666666554443
No 380
>PF15469 Sec5: Exocyst complex component Sec5
Probab=70.01 E-value=24 Score=30.22 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=21.4
Q ss_pred HHHHhccCHHHHHHHHHHHHHhhhhc
Q psy8368 163 KNAFNDKNIVSAVRRYRDAVKLLINT 188 (372)
Q Consensus 163 n~~~~~g~~~~A~~~y~~al~~~~~~ 188 (372)
..+.++|+|..|+..|.+|-.++...
T Consensus 94 ~~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 94 RECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 34557999999999999999887554
No 381
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=69.87 E-value=36 Score=33.62 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=50.0
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKA 230 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~a 230 (372)
.....+.|.-+|.+|+|.++..+-....++.|. ...|.-+|.|.+..++|.+|..++...
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaPS----------------~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS----------------PQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc----------------HHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 566778888999999999998887777777652 467888999999999999999988744
No 382
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=69.62 E-value=41 Score=27.53 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=26.8
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy8368 238 ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKL 271 (372)
Q Consensus 238 ~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l 271 (372)
...++..++.+|.||.++|+..+|-+.+.+|.+-
T Consensus 116 ~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 116 EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp --S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4458889999999999999999999999988653
No 383
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=68.46 E-value=37 Score=32.14 Aligned_cols=66 Identities=15% Similarity=-0.034 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCC---CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 206 VYRNLMVCYNNNKQYKLTCDCASKALQFASHFAT---KDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p---~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
+-.|+|.+..+..-...++...+..+. +| .+.-.+--+|-.+..+|+.++|...|++|+.+.++..
T Consensus 331 V~LNRAVAla~~~Gp~agLa~ve~L~~-----~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 331 VTLNRAVALAMREGPAAGLAMVEALLA-----RPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred EeehHHHHHHHhhhHHhHHHHHHHhhc-----ccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 457899988888778888887776663 32 2445566789999999999999999999999999987
No 384
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=66.86 E-value=41 Score=31.75 Aligned_cols=102 Identities=10% Similarity=0.017 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy8368 204 CRVYRNLMVCYNNNKQ------------YKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKL 271 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~------------y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l 271 (372)
+.++..+....-++-. .+.-+..+++||+ .+|++.+.+..+=.+..+..+-+....-+++++..
T Consensus 19 i~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~----~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 19 IEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALK----HNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455555555555533 3455667777776 57777777777777777777777777888888888
Q ss_pred cCCCccHHHHHHHHHHHHHH-HHH-HHHHHHHHHHhhccCCCC
Q psy8368 272 AAKDSVRAEIDKEILKADLG-NQQ-YQKETKARCMKMFSSSSS 312 (372)
Q Consensus 272 ~p~~~~~~~~~~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~ 312 (372)
+|++. .++..+-..... ... .-...+..|.+.+.....
T Consensus 95 ~~~~~---~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~ 134 (321)
T PF08424_consen 95 NPGSP---ELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSR 134 (321)
T ss_pred CCCCh---HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 88777 666555444333 211 123445666666554443
No 385
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.79 E-value=88 Score=29.11 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.2
Q ss_pred HHhhHHHHhccCHHHHHHHHHHHHHh
Q psy8368 159 GASGKNAFNDKNIVSAVRRYRDAVKL 184 (372)
Q Consensus 159 k~~Gn~~~~~g~~~~A~~~y~~al~~ 184 (372)
.+.+|.+.+.+++.+|+..|.+.+..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~k 32 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGK 32 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 46788999999999999999887754
No 386
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=66.42 E-value=16 Score=20.50 Aligned_cols=29 Identities=17% Similarity=0.016 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCccHHHHHHHHHH
Q psy8368 256 QEWTSAIKHLKTARKLAAKDSVRAEIDKEILK 287 (372)
Q Consensus 256 ~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~ 287 (372)
|+++.|...|++++...|.+. .++.....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~---~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSV---ELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCCh---HHHHHHHH
Confidence 356667777777777777666 66555443
No 387
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=65.13 E-value=64 Score=32.05 Aligned_cols=32 Identities=13% Similarity=0.087 Sum_probs=27.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368 239 TKDVKLFFVWGKALIGLQEWTSAIKHLKTARK 270 (372)
Q Consensus 239 p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~ 270 (372)
.++..-|-++|.+.+..|+++-|..+|+++-.
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 34667899999999999999999999998743
No 388
>KOG3616|consensus
Probab=64.71 E-value=39 Score=35.39 Aligned_cols=46 Identities=11% Similarity=0.119 Sum_probs=27.9
Q ss_pred ccCHHHHHHHHHHHHHhhccCCCCchhHHH-HHHHHHHhcCCHHHHHHHHHHH
Q psy8368 217 NKQYKLTCDCASKALQFASHFATKDVKLFF-VWGKALIGLQEWTSAIKHLKTA 268 (372)
Q Consensus 217 l~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~-r~a~a~~~l~~~e~A~~~~~~a 268 (372)
.++|.+|+...+..- |.+-.-.|| ..|.-|..+|+|+-|.+.|.++
T Consensus 745 akew~kai~ildniq------dqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQ------DQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred hhhhhhhHhHHHHhh------hhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 445555555554432 222223344 5688888899998888877655
No 389
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=64.39 E-value=38 Score=24.61 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368 206 VYRNLMVCYNNNKQYKLTCDCASKALQF 233 (372)
Q Consensus 206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~~ 233 (372)
-+...|.-+-+.|+|.+|+.+|..+++.
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445555666677888888877777764
No 390
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=63.85 E-value=53 Score=23.85 Aligned_cols=15 Identities=20% Similarity=0.144 Sum_probs=7.9
Q ss_pred HHHHHHHHhhcCCCc
Q psy8368 262 IKHLKTARKLAAKDS 276 (372)
Q Consensus 262 ~~~~~~al~l~p~~~ 276 (372)
++.|..+++..|+..
T Consensus 33 ie~l~~~lk~e~d~~ 47 (77)
T cd02683 33 IDLLMQVLKGTKDEA 47 (77)
T ss_pred HHHHHHHHhhCCCHH
Confidence 344445555666554
No 391
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=63.69 E-value=71 Score=30.30 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368 244 LFFVWGKALIGLQEWTSAIKHLKTARK 270 (372)
Q Consensus 244 a~~r~a~a~~~l~~~e~A~~~~~~al~ 270 (372)
|+|+.|..+...+++.+|+..++.|..
T Consensus 253 a~~~~a~~~~e~~~~G~aia~L~~A~~ 279 (345)
T cd09034 253 AYYYHGLKLDEANKIGEAIARLQAALE 279 (345)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 677777777777888888888887765
No 392
>KOG3783|consensus
Probab=62.71 E-value=78 Score=31.90 Aligned_cols=76 Identities=11% Similarity=0.014 Sum_probs=58.6
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA 234 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~ 234 (372)
+..+...+..+...|+-+.|+..+..++. ...+.+...++.-+|.|+.-+.+|..|-.++....+
T Consensus 267 a~wll~~ar~l~~~g~~eaa~~~~~~~v~-------------~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~d-- 331 (546)
T KOG3783|consen 267 ALWLLMEARILSIKGNSEAAIDMESLSIP-------------IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRD-- 331 (546)
T ss_pred ccHHHHHHHHHHHcccHHHHHHHHHhccc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh--
Confidence 44556777778888887777777777765 134455577899999999999999999999998885
Q ss_pred ccCCCCchhHHHHH
Q psy8368 235 SHFATKDVKLFFVW 248 (372)
Q Consensus 235 ~~~~p~~~ka~~r~ 248 (372)
-.+..+|+|..
T Consensus 332 ---esdWS~a~Y~Y 342 (546)
T KOG3783|consen 332 ---ESDWSHAFYTY 342 (546)
T ss_pred ---hhhhhHHHHHH
Confidence 45678888764
No 393
>KOG3783|consensus
Probab=61.34 E-value=97 Score=31.25 Aligned_cols=71 Identities=15% Similarity=0.001 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhc--cCCCC-chhHHHHHHHHHHhcCC-HHHHHHHHHHHHhhcCCCc
Q psy8368 206 VYRNLMVCYNNNKQYKLTCDCASKALQFAS--HFATK-DVKLFFVWGKALIGLQE-WTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~--~~~p~-~~ka~~r~a~a~~~l~~-~e~A~~~~~~al~l~p~~~ 276 (372)
-++-+|.|+..+|+...|..++..+++-.. +.++- .+-|+|-+|..|..++. +.+|.+.+.+|..-..++.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 355678899999999999999998884211 12222 56799999999999999 9999999999999887776
No 394
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=61.14 E-value=1.3e+02 Score=33.04 Aligned_cols=80 Identities=15% Similarity=0.089 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchh-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccH
Q psy8368 206 VYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVK-------LFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVR 278 (372)
Q Consensus 206 l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~k-------a~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~ 278 (372)
=|..-|.+|..+++|.+-++++.-|++ --|+++. ..||+-.+..... ..|+....-++.+.|.....
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALK----RYSQHPEISRLRDHLVYRLHESLYKHR--REALVFMLLALWIAPEKISS 627 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHH----hcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCcccccc
Confidence 377889999999999999999999998 4455443 4555555544433 56778888899999987622
Q ss_pred HHHHHHHHHHHHH
Q psy8368 279 AEIDKEILKADLG 291 (372)
Q Consensus 279 ~~~~~~l~~~~~~ 291 (372)
..-.+.+..++.+
T Consensus 628 ~~~~~~~~~~~~~ 640 (932)
T PRK13184 628 REEEKFLEILYHK 640 (932)
T ss_pred hHHHHHHHHHHhh
Confidence 2334444444443
No 395
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=61.11 E-value=46 Score=30.75 Aligned_cols=64 Identities=11% Similarity=0.032 Sum_probs=54.3
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
....+...+..+...|+++.++...++-+...++. -..|..+-..|++.|+...|+..|.+.-+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~---------------E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYD---------------EPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc---------------hHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 35666778888899999999999999999887665 47788888999999999999999998765
No 396
>KOG2041|consensus
Probab=61.10 E-value=1.8e+02 Score=30.62 Aligned_cols=75 Identities=12% Similarity=0.026 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHH
Q psy8368 203 LCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEID 282 (372)
Q Consensus 203 ~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~ 282 (372)
+-.++.|+|..+..+..|.+|.++|.+.-. .-+...||+.+..|++ ++....--|.+. ...
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------------~e~~~ecly~le~f~~----LE~la~~Lpe~s---~ll 855 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGD------------TENQIECLYRLELFGE----LEVLARTLPEDS---ELL 855 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------hHhHHHHHHHHHhhhh----HHHHHHhcCccc---chH
Confidence 356888999999999999999999988752 2344566666666654 334444446666 555
Q ss_pred HHHHHHHHHHHHHH
Q psy8368 283 KEILKADLGNQQYQ 296 (372)
Q Consensus 283 ~~l~~~~~~~~~~~ 296 (372)
..++......+...
T Consensus 856 p~~a~mf~svGMC~ 869 (1189)
T KOG2041|consen 856 PVMADMFTSVGMCD 869 (1189)
T ss_pred HHHHHHHHhhchHH
Confidence 55555444444333
No 397
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=60.56 E-value=69 Score=25.77 Aligned_cols=68 Identities=12% Similarity=-0.047 Sum_probs=52.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC-----------chhHHHHHHHHHHhcCCHHHHHHHHHHHH----hh
Q psy8368 207 YRNLMVCYNNNKQYKLTCDCASKALQFASHFATK-----------DVKLFFVWGKALIGLQEWTSAIKHLKTAR----KL 271 (372)
Q Consensus 207 ~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~-----------~~ka~~r~a~a~~~l~~~e~A~~~~~~al----~l 271 (372)
+.++|.-.++.+++-.++-+|++|+.+.+.++.. .+-...|+|.-+...|+-+-.+.+++-|- .+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 5578888899999999999999999755444311 23367789999999999999999997664 45
Q ss_pred cCC
Q psy8368 272 AAK 274 (372)
Q Consensus 272 ~p~ 274 (372)
-|.
T Consensus 84 iPQ 86 (140)
T PF10952_consen 84 IPQ 86 (140)
T ss_pred ccC
Confidence 564
No 398
>KOG3807|consensus
Probab=60.45 E-value=1.4e+02 Score=28.40 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARK 270 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~ 270 (372)
+-+-..+|.|..|+|+..+|++.++...+ -.|- -...+-++-.+++++.-|.+....+.+-=.
T Consensus 275 ~YIKRRLAMCARklGrlrEA~K~~RDL~k----e~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 275 VYIKRRLAMCARKLGRLREAVKIMRDLMK----EFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhh----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34455678888889998888888887765 3332 122444566666666655555444444333
No 399
>KOG0985|consensus
Probab=59.97 E-value=87 Score=34.32 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=74.5
Q ss_pred HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh--
Q psy8368 157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFA-- 234 (372)
Q Consensus 157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~-- 234 (372)
.....|+.+|..|.|+.|.-+|.. ++-+..+|..+..+|+|+.|....++|-...
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~-----------------------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktW 1252 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN-----------------------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTW 1252 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH-----------------------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHH
Confidence 345677788888888877777733 3455678888889999999999888774310
Q ss_pred -----ccCCCC--------------chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy8368 235 -----SHFATK--------------DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQ 294 (372)
Q Consensus 235 -----~~~~p~--------------~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~ 294 (372)
...+.. ++.-+-.+-.-|...|-|++-+..++.+|.+...+. ....+|+-+..+.+-
T Consensus 1253 K~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM---gmfTELaiLYskykp 1328 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM---GMFTELAILYSKYKP 1328 (1666)
T ss_pred HHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH---HHHHHHHHHHHhcCH
Confidence 000100 111222333446677888999999999999988877 677777777665543
No 400
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=59.83 E-value=1.1e+02 Score=29.58 Aligned_cols=103 Identities=15% Similarity=-0.035 Sum_probs=75.4
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhh-ccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLIN-TQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~-~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~ 233 (372)
-..+......+.++|-+..|++..+-.+.+.+. +| .-+++-+-...++.++|+=-+..++....
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP--------------~g~ll~ID~~ALrs~~y~~Li~~~~~~~~- 167 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP--------------LGVLLFIDYYALRSRQYQWLIDFSESPLA- 167 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc--------------chhHHHHHHHHHhcCCHHHHHHHHHhHhh-
Confidence 345556667778899999999999888888655 22 33444455666778888888888887664
Q ss_pred hccCCCC----chhHHHHHHHHHHhcCCH---------------HHHHHHHHHHHhhcCC
Q psy8368 234 ASHFATK----DVKLFFVWGKALIGLQEW---------------TSAIKHLKTARKLAAK 274 (372)
Q Consensus 234 ~~~~~p~----~~ka~~r~a~a~~~l~~~---------------e~A~~~~~~al~l~p~ 274 (372)
....+ -+.--|-+|.|+..+++- +.|...+.+|+..-|.
T Consensus 168 --~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 168 --KCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred --hhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 01111 224678889999999988 8999999999988884
No 401
>KOG0276|consensus
Probab=58.75 E-value=38 Score=34.63 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=27.4
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKL 184 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~ 184 (372)
...+++..|+.+..++++..|.+++.+|-.+
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 3467899999999999999999999998765
No 402
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=58.20 E-value=71 Score=23.39 Aligned_cols=13 Identities=46% Similarity=0.549 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q psy8368 220 YKLTCDCASKALQ 232 (372)
Q Consensus 220 y~~Ai~~~~~aL~ 232 (372)
|+.|..+.++||+
T Consensus 5 ~~~A~~~I~kaL~ 17 (79)
T cd02679 5 YKQAFEEISKALR 17 (79)
T ss_pred HHHHHHHHHHHhh
Confidence 4555555555554
No 403
>KOG1463|consensus
Probab=57.54 E-value=1.2e+02 Score=28.87 Aligned_cols=114 Identities=14% Similarity=0.099 Sum_probs=72.6
Q ss_pred HHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHH--HHHHHHHHHhhcc
Q psy8368 159 GASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLT--CDCASKALQFASH 236 (372)
Q Consensus 159 k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~A--i~~~~~aL~~~~~ 236 (372)
..-|-.+....+|.-|..+|-+|.+-+...... ..... .+--+-.|-+.++..++. +-....+++
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~----v~A~~-----sLKYMlLcKIMln~~ddv~~lls~K~~l~---- 279 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDD----VKALT-----SLKYMLLCKIMLNLPDDVAALLSAKLALK---- 279 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCCc----HHHHH-----HHHHHHHHHHHhcCHHHHHHHHhhHHHHh----
Confidence 345566666678888888888877655332111 11111 122233455566666554 445556675
Q ss_pred CCCCchhHHHHHHHHHHh--cCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368 237 FATKDVKLFFVWGKALIG--LQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG 291 (372)
Q Consensus 237 ~~p~~~ka~~r~a~a~~~--l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~ 291 (372)
.+.....|+--.|.|+.. +.+|+.|+..|..=+.-|| -++..+..+...
T Consensus 280 y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~------ivr~Hl~~Lyd~ 330 (411)
T KOG1463|consen 280 YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP------IVRSHLQSLYDN 330 (411)
T ss_pred ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh------HHHHHHHHHHHH
Confidence 777788999999999865 6789999999988887776 555666655443
No 404
>KOG1463|consensus
Probab=56.93 E-value=1.8e+02 Score=27.73 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy8368 198 QLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKL 271 (372)
Q Consensus 198 ~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l 271 (372)
...-++..+-..+...|+..++|.+|+......++-+..+|.. -+..+.--.++|..+.+...|...+-.|...
T Consensus 122 kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~ 197 (411)
T KOG1463|consen 122 KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTT 197 (411)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHh
Confidence 3444667788889999999999999999999888765556544 4556777889999999999998888777643
No 405
>KOG2758|consensus
Probab=56.50 E-value=84 Score=29.69 Aligned_cols=72 Identities=13% Similarity=0.053 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD 275 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~ 275 (372)
+..++..|...+..|+|..|-.+.-.-.......++++..|++-.-.+-.-+.+|+-|++++.+..+.-.++
T Consensus 129 i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs~ 200 (432)
T KOG2758|consen 129 IETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREYIDSK 200 (432)
T ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccc
Confidence 567788999999999999998866555444445666678888877777778899999999999988764433
No 406
>KOG2561|consensus
Probab=56.42 E-value=97 Score=30.53 Aligned_cols=116 Identities=14% Similarity=0.107 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCH---HHHH---
Q psy8368 151 VLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQY---KLTC--- 224 (372)
Q Consensus 151 ~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y---~~Ai--- 224 (372)
.+=.+.-+.++|..+.....|..|+...-.|=+++...- ....+.-+-.+.+-..+-.||+.+++. ..|-
T Consensus 159 Almmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd----~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL 234 (568)
T KOG2561|consen 159 ALMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCD----SKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRL 234 (568)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh----HHHHHhhcchhhhhcchhheehhhcccccCChHHHHH
Confidence 345677888999999999999999999888877764431 111111222245556677899988862 2222
Q ss_pred HHHHHHHH---------hhccCCCC-chhHHH-----HHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368 225 DCASKALQ---------FASHFATK-DVKLFF-----VWGKALIGLQEWTSAIKHLKTARK 270 (372)
Q Consensus 225 ~~~~~aL~---------~~~~~~p~-~~ka~~-----r~a~a~~~l~~~e~A~~~~~~al~ 270 (372)
.-|++.+. +.....+. --+|+| --|...+..|+-++|.++|+.|..
T Consensus 235 ~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 235 VRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 22222221 00011122 223433 237788899999999999998853
No 407
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=56.35 E-value=1.6e+02 Score=26.84 Aligned_cols=104 Identities=10% Similarity=0.020 Sum_probs=55.9
Q ss_pred HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHH-HHHHHHHHHHHh
Q psy8368 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYK-LTCDCASKALQF 233 (372)
Q Consensus 155 ~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~-~Ai~~~~~aL~~ 233 (372)
.+-+..=+..+++.|++..|...-.--++.+.....+.++. ...++..++..+..-. .-....++++++
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~----------~~~rl~~l~~~~~~~~p~r~~fi~~ai~W 79 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEE----------SIARLIELISLFPPEEPERKKFIKAAIKW 79 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHH----------HHHHHHHHHHHS-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH----------HHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 44555566777788888888777666666665543332211 1223444444333211 233444444443
Q ss_pred hcc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8368 234 ASH--FATKDVKLFFVWGKALIGLQEWTSAIKHLKTA 268 (372)
Q Consensus 234 ~~~--~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~a 268 (372)
-.. ..-.++..+..+|..|.+-++|.+|..+|-.+
T Consensus 80 S~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 80 SKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred HccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 311 22237788889999999999999988777543
No 408
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=55.24 E-value=30 Score=34.39 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=30.3
Q ss_pred HHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q psy8368 214 YNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK 274 (372)
Q Consensus 214 ~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~ 274 (372)
+.++++|++|.....-.|. ..-......--.|-.-..+|-+++|.-++++.+.++|.
T Consensus 367 ~~~l~r~~~a~s~a~~~l~----~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 367 LHGLARWREALSTAEMMLS----NEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hhchhhHHHHHHHHHHHhc----cccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 4455666666665555552 11122333333334445566667777777777776653
No 409
>KOG1464|consensus
Probab=54.70 E-value=1e+02 Score=28.45 Aligned_cols=117 Identities=21% Similarity=0.198 Sum_probs=64.1
Q ss_pred hhHHHHHHH--------HHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHH--HHHHHHHHHHHH
Q psy8368 146 PAFAKVLKR--------AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYL--CRVYRNLMVCYN 215 (372)
Q Consensus 146 ~~~~~~~~~--------~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~--~~l~~Nla~~~~ 215 (372)
.+|+++++. -.++|+.-...|+.++|.+-...|++.+.++...-+.+-. ...++..+ ++..-|++.
T Consensus 48 ~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS-EKsIN~IlDyiStS~~m~L--- 123 (440)
T KOG1464|consen 48 SSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS-EKSINSILDYISTSKNMDL--- 123 (440)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHhhhhhhHH---
Confidence 455555542 2577888899999999999999999999887553221111 11111111 111112111
Q ss_pred HccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy8368 216 NNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKL 271 (372)
Q Consensus 216 kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l 271 (372)
.++--...-.||+-+ ..+--..|.-..+|+.|+..++|..-...+++.-..
T Consensus 124 ----LQ~FYeTTL~ALkdA-KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 124 ----LQEFYETTLDALKDA-KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred ----HHHHHHHHHHHHHhh-hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH
Confidence 111112222333200 012225556667999999999987766665555443
No 410
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=54.49 E-value=53 Score=30.10 Aligned_cols=71 Identities=11% Similarity=0.038 Sum_probs=54.5
Q ss_pred hhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCC
Q psy8368 161 SGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATK 240 (372)
Q Consensus 161 ~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~ 240 (372)
.=+.+...+++..|...-.+.+.+.|..+ .-...+|..|.++|.++-|+.++...++ .-|+
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp---------------~eirDrGliY~ql~c~~vAl~dl~~~~~----~~P~ 247 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDP---------------YEIRDRGLIYAQLGCYHVALEDLSYFVE----HCPD 247 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCCh---------------hhccCcHHHHHhcCCchhhHHHHHHHHH----hCCC
Confidence 33566778899999999999998876652 3345789999999999999999999886 5677
Q ss_pred chhHHHHHHH
Q psy8368 241 DVKLFFVWGK 250 (372)
Q Consensus 241 ~~ka~~r~a~ 250 (372)
...+-.-++.
T Consensus 248 ~~~a~~ir~~ 257 (269)
T COG2912 248 DPIAEMIRAQ 257 (269)
T ss_pred chHHHHHHHH
Confidence 6665544443
No 411
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=54.23 E-value=75 Score=25.92 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=20.6
Q ss_pred ccchHHHHHhccCCCCcEEEEEecC
Q psy8368 69 GLIPAFEYAILSMQKGEKSDFFASY 93 (372)
Q Consensus 69 ~~~~~le~~l~~m~~Ge~~~~~i~~ 93 (372)
.+..-+-.||+|.++|+.+.+..|.
T Consensus 90 Si~SPlG~ALlG~~~Gd~v~v~~p~ 114 (137)
T PRK05753 90 SVLAPVGAALLGLSVGQSIDWPLPG 114 (137)
T ss_pred cccCHHHHHHcCCCCCCEEEEECCC
Confidence 3456688999999999999988763
No 412
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=53.86 E-value=40 Score=24.14 Aligned_cols=12 Identities=17% Similarity=0.155 Sum_probs=5.3
Q ss_pred HHHHHHHhhcCC
Q psy8368 263 KHLKTARKLAAK 274 (372)
Q Consensus 263 ~~~~~al~l~p~ 274 (372)
+.|.++++..|+
T Consensus 36 e~l~~~~~~~~~ 47 (77)
T smart00745 36 EYLLEGIKVESD 47 (77)
T ss_pred HHHHHHhccCCC
Confidence 334444444544
No 413
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=53.75 E-value=2e+02 Score=27.43 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368 244 LFFVWGKALIGLQEWTSAIKHLKTARK 270 (372)
Q Consensus 244 a~~r~a~a~~~l~~~e~A~~~~~~al~ 270 (372)
|+|+.|..+...+++-+|+..|+.|..
T Consensus 257 A~y~~a~~~~e~~k~GeaIa~L~~A~~ 283 (346)
T cd09240 257 AEYHQSLVAKAQKKFGEEIARLQHALE 283 (346)
T ss_pred HHHHHHHHhhhhchHHHHHHHHHHHHH
Confidence 677777777778888888888887765
No 414
>PF12854 PPR_1: PPR repeat
Probab=53.29 E-value=36 Score=20.16 Aligned_cols=27 Identities=11% Similarity=0.022 Sum_probs=18.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHH
Q psy8368 241 DVKLFFVWGKALIGLQEWTSAIKHLKT 267 (372)
Q Consensus 241 ~~ka~~r~a~a~~~l~~~e~A~~~~~~ 267 (372)
|.-.|.-+-.+|.+.|++++|++.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 444666677777777777777776654
No 415
>KOG3540|consensus
Probab=52.79 E-value=2.5e+02 Score=28.01 Aligned_cols=124 Identities=10% Similarity=0.089 Sum_probs=71.2
Q ss_pred HHHHHhhHHHHhccCHHHHHH-----HHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy8368 156 QELGASGKNAFNDKNIVSAVR-----RYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKA 230 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~-----~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~a 230 (372)
..+++.+..-.+.++ .+|-+ +|++-++.+.. +....+..+...+..+-.+++. .+-..|+..|..|
T Consensus 268 ~VmkEW~~ae~qaKn-PKAekqalnqhFQ~~v~sLEe-------e~a~erqqlvetH~~RV~AmlN-drrR~Ale~ylaA 338 (615)
T KOG3540|consen 268 KVMKEWEEAETQAKN-PKAEKQALNQHFQKTVSSLEE-------EAARERQQLVETHEARVEAMLN-DRRRDALENYLAA 338 (615)
T ss_pred HHHHHHHHHHhcccC-chhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 344555555555566 44533 45554444422 1112222234555555555543 3457899999999
Q ss_pred HHhhccCCCCchhHHHHHHHHHHhc--CCHHHHHHHHHHHHhhcCCCc--cHHHHHHHHHHHHHHH
Q psy8368 231 LQFASHFATKDVKLFFVWGKALIGL--QEWTSAIKHLKTARKLAAKDS--VRAEIDKEILKADLGN 292 (372)
Q Consensus 231 L~~~~~~~p~~~ka~~r~a~a~~~l--~~~e~A~~~~~~al~l~p~~~--~~~~~~~~l~~~~~~~ 292 (372)
|. .+|..+.-.+..-+.|... ++---.+..|+.++..||..+ +...+...|.-+..++
T Consensus 339 Lq----a~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkkAaqmk~qV~thLrvIeeR~ 400 (615)
T KOG3540|consen 339 LQ----ADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKKAAQMKSQVMTHLRVIEERI 400 (615)
T ss_pred Hh----cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHh
Confidence 98 8888776666655555543 334446889999999999876 2333444454444443
No 416
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.17 E-value=56 Score=28.09 Aligned_cols=52 Identities=23% Similarity=0.230 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 220 YKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 220 y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
....+...++.++ ..| ++..+.+++.++..+|+.++|.....++..+-|.+.
T Consensus 127 l~~~~~~a~~~l~----~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~ 178 (193)
T PF11846_consen 127 LEAYIEWAERLLR----RRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPADE 178 (193)
T ss_pred HHHHHHHHHHHHH----hCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHH
Confidence 4455566666664 444 677899999999999999999999999999999654
No 417
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=52.13 E-value=38 Score=19.62 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHhc----CCHHHHHHHHHHHHh
Q psy8368 243 KLFFVWGKALIGL----QEWTSAIKHLKTARK 270 (372)
Q Consensus 243 ka~~r~a~a~~~l----~~~e~A~~~~~~al~ 270 (372)
.|.+++|..|..- .+...|+..|++|.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 4566666666532 366677777766654
No 418
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=51.91 E-value=55 Score=23.68 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhh
Q psy8368 147 AFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLL 185 (372)
Q Consensus 147 ~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~ 185 (372)
...+.++.+..+.+.|.-++.+|++..|+.++.=|--.+
T Consensus 27 ~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~GwL 65 (75)
T PF04010_consen 27 AAEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHGWL 65 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999987666554
No 419
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=51.90 E-value=2.1e+02 Score=26.91 Aligned_cols=60 Identities=3% Similarity=-0.126 Sum_probs=38.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHH---HHHHHhcCCHHHHHHHHHHHHhhcC
Q psy8368 210 LMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVW---GKALIGLQEWTSAIKHLKTARKLAA 273 (372)
Q Consensus 210 la~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~---a~a~~~l~~~e~A~~~~~~al~l~p 273 (372)
+-.++.+..+-++...-.++++. .+|++...|-.. -+.....-.++..+..|.+++..-.
T Consensus 71 ~l~~~~~~~~~~~l~~~we~~l~----~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~ 133 (321)
T PF08424_consen 71 YLEEGEKVWDSEKLAKKWEELLF----KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALS 133 (321)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH----HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 33444555567777888888886 677766654433 3333344568888888888876544
No 420
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=51.09 E-value=63 Score=22.56 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=8.0
Q ss_pred HHHHHHHccCHHHHHHHHHHH
Q psy8368 210 LMVCYNNNKQYKLTCDCASKA 230 (372)
Q Consensus 210 la~~~~kl~~y~~Ai~~~~~a 230 (372)
.|.-+-+.|+|.+|+.+|..+
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~a 31 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEA 31 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 333333333333333333333
No 421
>KOG2396|consensus
Probab=50.91 E-value=2.8e+02 Score=28.00 Aligned_cols=87 Identities=9% Similarity=-0.015 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Q psy8368 220 YKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKET 299 (372)
Q Consensus 220 y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~ 299 (372)
..+....|+.|+. .-+.+++.|++...-..+.+.+.+-...|.+++..+|+++ +++-.-+.-.-.....-...
T Consensus 87 ~~rIv~lyr~at~----rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~---dLWI~aA~wefe~n~ni~sa 159 (568)
T KOG2396|consen 87 PNRIVFLYRRATN----RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNP---DLWIYAAKWEFEINLNIESA 159 (568)
T ss_pred HHHHHHHHHHHHH----hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCc---hhHHhhhhhHHhhccchHHH
Confidence 4556667888886 5567889999887777777779999999999999999999 77655555444444444555
Q ss_pred HHHHHhhccCCCCC
Q psy8368 300 KARCMKMFSSSSSP 313 (372)
Q Consensus 300 ~~~~~~~~~~~~~~ 313 (372)
|+.+.+.++-.++.
T Consensus 160 RalflrgLR~npds 173 (568)
T KOG2396|consen 160 RALFLRGLRFNPDS 173 (568)
T ss_pred HHHHHHHhhcCCCC
Confidence 66666655555443
No 422
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=50.34 E-value=1.8e+02 Score=25.57 Aligned_cols=74 Identities=14% Similarity=0.060 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-ccHHHHHHHHHHHHHHHHHHHH
Q psy8368 220 YKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD-SVRAEIDKEILKADLGNQQYQK 297 (372)
Q Consensus 220 y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~-~~~~~~~~~l~~~~~~~~~~~~ 297 (372)
-..|...+.++-. .-.-+.+...+.+|.-|. ..+.+.|+..|.++|++.+.+ ....++...|+.+....++++.
T Consensus 122 d~~A~~~fL~~E~---~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 122 DQEALRRFLQLEG---TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred cHHHHHHHHHHcC---CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3556666655542 111236677777776666 788999999999999997655 3334888888888887776643
No 423
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=49.06 E-value=29 Score=19.22 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=17.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368 207 YRNLMVCYNNNKQYKLTCDCASKAL 231 (372)
Q Consensus 207 ~~Nla~~~~kl~~y~~Ai~~~~~aL 231 (372)
|+.+-.+|.+.|++++|...+++-.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 5566677777777777777777654
No 424
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=48.48 E-value=37 Score=20.18 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=17.4
Q ss_pred hHHHHHH--HHHHhcC-----CHHHHHHHHHHHHhh
Q psy8368 243 KLFFVWG--KALIGLQ-----EWTSAIKHLKTARKL 271 (372)
Q Consensus 243 ka~~r~a--~a~~~l~-----~~e~A~~~~~~al~l 271 (372)
.|.|++| .+|..-. ++..|+.+|++|.+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 4667777 4443322 467777777777653
No 425
>KOG0889|consensus
Probab=47.71 E-value=3e+02 Score=34.51 Aligned_cols=87 Identities=16% Similarity=0.058 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhc----CC----HHHHHHHHHHHHhh
Q psy8368 200 EEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGL----QE----WTSAIKHLKTARKL 271 (372)
Q Consensus 200 ~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l----~~----~e~A~~~~~~al~l 271 (372)
.+..+..+.-.|..+.+++++++|-..+..|++ ++-.-.|||+..|.-+... .. -..|+.+|-+|...
T Consensus 2808 ~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQ----i~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~ 2883 (3550)
T KOG0889|consen 2808 DRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQ----IDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARL 2883 (3550)
T ss_pred hHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhcc
Confidence 345567888889999999999999999999998 7777799999998876532 11 24577777777776
Q ss_pred cCCCccHHHHHHHHHHHHHHHHH
Q psy8368 272 AAKDSVRAEIDKEILKADLGNQQ 294 (372)
Q Consensus 272 ~p~~~~~~~~~~~l~~~~~~~~~ 294 (372)
.-+.. +++.|+++.-.+.-
T Consensus 2884 ~~~sk----aRk~iakvLwLls~ 2902 (3550)
T KOG0889|consen 2884 YNSSK----ARKLIAKVLWLLSF 2902 (3550)
T ss_pred ccchh----hHHHHHHHHHHHHh
Confidence 65443 67777777665543
No 426
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=47.52 E-value=2.7e+02 Score=26.80 Aligned_cols=35 Identities=11% Similarity=0.044 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhHHHH-------hc-----cCHHHHHHHHHHHHHhh
Q psy8368 151 VLKRAQELGASGKNAF-------ND-----KNIVSAVRRYRDAVKLL 185 (372)
Q Consensus 151 ~~~~~~~~k~~Gn~~~-------~~-----g~~~~A~~~y~~al~~~ 185 (372)
..+.+..+++.|-.+. .. .....|...|++|--++
T Consensus 105 ~fEk~sVLfNigal~s~~As~~~~~~~~s~e~~K~A~~~fq~AAG~F 151 (353)
T cd09243 105 IFELASMLFNVALWYTKHASKLAGKEDITEDEAKDVHKSLRTAAGIF 151 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 4556666666666553 22 22667777777776555
No 427
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=47.31 E-value=43 Score=27.94 Aligned_cols=25 Identities=8% Similarity=0.162 Sum_probs=20.6
Q ss_pred cchHHHHHhccCCCCcEEEEEecCC
Q psy8368 70 LIPAFEYAILSMQKGEKSDFFASYE 94 (372)
Q Consensus 70 ~~~~le~~l~~m~~Ge~~~~~i~~~ 94 (372)
+..-|-.+|+|.++|+.+.|..|..
T Consensus 122 ~~SPlG~aLlGk~~Gd~v~~~~p~g 146 (157)
T PRK00226 122 IESPIARALIGKKVGDTVEVTTPGG 146 (157)
T ss_pred cCChHHHHHhCCCCCCEEEEEcCCC
Confidence 4456889999999999999988643
No 428
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=47.29 E-value=57 Score=25.54 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc
Q psy8368 146 PAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ 189 (372)
Q Consensus 146 ~~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~ 189 (372)
.++...+..+..+...|..++..|+.+.|-..|.+.+.++...+
T Consensus 29 ~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki~ 72 (115)
T PF08969_consen 29 IPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKIP 72 (115)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCHC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 35556789999999999999999999999999999998884443
No 429
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=46.66 E-value=97 Score=28.07 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHH
Q psy8368 171 IVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN-NKQYKLTCDCASKALQ 232 (372)
Q Consensus 171 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k-l~~y~~Ai~~~~~aL~ 232 (372)
-+.|...|+.|+.+......+.+ .++..+.+|.+..|+. +++..+|+....+|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~-------PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTH-------PIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCC-------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55888999999988654222222 3556788898888776 5888888887777764
No 430
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=46.13 E-value=3.4e+02 Score=27.61 Aligned_cols=83 Identities=7% Similarity=0.070 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHH
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKE 284 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~ 284 (372)
.|+..+-..+-....+.-....|++.|. + ..+--||+.+++||... .-+.-...+.+..+.+=++. ..-+.
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~----~-~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDv---v~~Re 137 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLE----Y-GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDV---VIGRE 137 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHH----h-cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhH---HHHHH
Confidence 3444455555566677788889999995 3 56777999999999988 55667788888889998888 88888
Q ss_pred HHHHHHHHHHHH
Q psy8368 285 ILKADLGNQQYQ 296 (372)
Q Consensus 285 l~~~~~~~~~~~ 296 (372)
|......++..+
T Consensus 138 La~~yEkik~sk 149 (711)
T COG1747 138 LADKYEKIKKSK 149 (711)
T ss_pred HHHHHHHhchhh
Confidence 887777655443
No 431
>KOG0985|consensus
Probab=45.99 E-value=1.1e+02 Score=33.68 Aligned_cols=67 Identities=13% Similarity=0.098 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Q psy8368 146 PAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCD 225 (372)
Q Consensus 146 ~~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~ 225 (372)
.+|.++.+....+-..|...+..|...+|+..|-+|=. .+.|.+.-....+.|.|++-+.
T Consensus 1095 ~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikadD--------------------ps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1095 YEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKADD--------------------PSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred HHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcCC--------------------cHHHHHHHHHHHhcCcHHHHHH
Confidence 45566666667777778888888888888887766532 2344444555555566666666
Q ss_pred HHHHHHH
Q psy8368 226 CASKALQ 232 (372)
Q Consensus 226 ~~~~aL~ 232 (372)
+...|-+
T Consensus 1155 yL~MaRk 1161 (1666)
T KOG0985|consen 1155 YLLMARK 1161 (1666)
T ss_pred HHHHHHH
Confidence 6555543
No 432
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=45.08 E-value=1.2e+02 Score=29.16 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=41.7
Q ss_pred ccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8368 217 NKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTA 268 (372)
Q Consensus 217 l~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~a 268 (372)
....-+|+...+.++. .+|.|....+.+.+.|..+|-...|...|...
T Consensus 196 ~~~l~~Ai~lLE~~l~----~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 196 SEYLLQAIALLEHALK----KSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 4457788888888997 99999999999999999999999998888643
No 433
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=44.47 E-value=2.4e+02 Score=27.01 Aligned_cols=27 Identities=7% Similarity=0.155 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368 244 LFFVWGKALIGLQEWTSAIKHLKTARK 270 (372)
Q Consensus 244 a~~r~a~a~~~l~~~e~A~~~~~~al~ 270 (372)
|+|+.|......++|-+++..++.|+.
T Consensus 239 A~y~~a~~~~e~~k~Ge~Ia~L~~A~~ 265 (355)
T cd09241 239 AHYRMALVALEKSKYGEEVARLRVALA 265 (355)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 677777777777788888888887775
No 434
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=44.33 E-value=3.5e+02 Score=27.47 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=46.0
Q ss_pred HHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHh--------------------cCCHHHHHHHHHHHHhhcC
Q psy8368 214 YNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIG--------------------LQEWTSAIKHLKTARKLAA 273 (372)
Q Consensus 214 ~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~--------------------l~~~e~A~~~~~~al~l~p 273 (372)
|....+|.+|+....-.|+ .|..+++|.-.+-.-+.. -.++.+|+.+|.+.+.++.
T Consensus 215 Ys~~eN~~eai~Ilk~il~----~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~e 290 (711)
T COG1747 215 YSENENWTEAIRILKHILE----HDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDE 290 (711)
T ss_pred hccccCHHHHHHHHHHHhh----hcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheecc
Confidence 3345689999999999997 888888887776666555 5678899999999998887
Q ss_pred CC
Q psy8368 274 KD 275 (372)
Q Consensus 274 ~~ 275 (372)
.|
T Consensus 291 Gn 292 (711)
T COG1747 291 GN 292 (711)
T ss_pred Cc
Confidence 66
No 435
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=44.26 E-value=2.7e+02 Score=26.02 Aligned_cols=74 Identities=11% Similarity=0.093 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy8368 198 QLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFA--TKDVKLFFVWGKALIGLQEWTSAIKHLKTARKL 271 (372)
Q Consensus 198 ~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~--p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l 271 (372)
...-++..+-..+...+++.+.|.+|+......+.-+..+| ++-...|.--.++|.+..+...+...+..|..+
T Consensus 119 kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~ 194 (421)
T COG5159 119 KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTL 194 (421)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 34446677888899999999999999999998886554444 335667778899999999999888888777644
No 436
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=44.19 E-value=1.6e+02 Score=29.19 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKAL 231 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL 231 (372)
..|..+|...+..|+++-|..++.++-
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 467777778888888887777777653
No 437
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=43.79 E-value=56 Score=27.08 Aligned_cols=26 Identities=8% Similarity=0.142 Sum_probs=21.6
Q ss_pred ccchHHHHHhccCCCCcEEEEEecCC
Q psy8368 69 GLIPAFEYAILSMQKGEKSDFFASYE 94 (372)
Q Consensus 69 ~~~~~le~~l~~m~~Ge~~~~~i~~~ 94 (372)
.+..-|-.+|+|.++|+.+.+..|..
T Consensus 116 S~~SPlG~ALlG~~~Gd~v~v~~p~g 141 (151)
T TIGR01462 116 SIDSPLGKALIGKKVGDVVEVQTPKG 141 (151)
T ss_pred cCCCHHHHHHcCCCCCCEEEEEeCCC
Confidence 45566889999999999999988643
No 438
>KOG2709|consensus
Probab=43.07 E-value=2.3e+02 Score=27.79 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
-+..|.|.||-.+++|.+|+.+|+++|.
T Consensus 23 ~~~V~~gl~~dE~~~~e~a~~~Ye~gl~ 50 (560)
T KOG2709|consen 23 YASVEQGLCYDEVNDWENALAMYEKGLN 50 (560)
T ss_pred HHHHHhhcchhhhcCHHHHHHHHHHHHH
Confidence 3566777777777777777777777775
No 439
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=43.05 E-value=49 Score=18.77 Aligned_cols=26 Identities=8% Similarity=0.052 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368 206 VYRNLMVCYNNNKQYKLTCDCASKAL 231 (372)
Q Consensus 206 l~~Nla~~~~kl~~y~~Ai~~~~~aL 231 (372)
.|+.+-.++.+.|+++.|...++.-.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46666777778888888777776654
No 440
>KOG2422|consensus
Probab=42.49 E-value=4e+02 Score=27.42 Aligned_cols=115 Identities=15% Similarity=0.158 Sum_probs=74.1
Q ss_pred HHhhHHHHh---ccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368 159 GASGKNAFN---DKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS 235 (372)
Q Consensus 159 k~~Gn~~~~---~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~ 235 (372)
.+.|+.+|+ ...|++|...|.-|....+...... ...-....+..+.-+|..+...|+.+-|.....++|=.++
T Consensus 239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d~n~v~~---lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d 315 (665)
T KOG2422|consen 239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHDPNNVLI---LLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFD 315 (665)
T ss_pred ccCceeEEEeecchHHHHHHHHHHHHHhhcCCcceee---eeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 445666663 4568888888888877653321000 0000012245666788888888887777666666652211
Q ss_pred -----------------cCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-Cc
Q psy8368 236 -----------------HFATKD---VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK-DS 276 (372)
Q Consensus 236 -----------------~~~p~~---~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~-~~ 276 (372)
-+.|.| ..++||--+.+...|.+.-|.+.++-.++++|. |+
T Consensus 316 ~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDP 377 (665)
T KOG2422|consen 316 RALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDP 377 (665)
T ss_pred HHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCc
Confidence 112332 347778888888899999999999999999998 77
No 441
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=42.02 E-value=2.8e+02 Score=27.93 Aligned_cols=129 Identities=12% Similarity=0.081 Sum_probs=80.2
Q ss_pred hHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc
Q psy8368 162 GKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD 241 (372)
Q Consensus 162 Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~ 241 (372)
-......|+...|......+++-.+..| .+..-++..+..+|.|+.+..+..-+-. .+ ..-
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p---------------~~i~l~~~i~~~lg~ye~~~~~~s~~~~---~~-~s~ 356 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDP---------------VLIQLRSVIFSHLGYYEQAYQDISDVEK---II-GTT 356 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCc---------------hhhHHHHHHHHHhhhHHHHHHHhhchhh---hh-cCC
Confidence 3445667888888888888887765543 3334567888899999999888776654 12 233
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy8368 242 VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSSP 313 (372)
Q Consensus 242 ~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (372)
.++.--+-....+++++.+|+..-.-.|.-+-.++ ++..--+--...+ .+-.+.--.|+++|...+..
T Consensus 357 ~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~---ei~~iaa~sa~~l-~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 357 DSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDE---EVLTVAAGSADAL-QLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred chHHHHHHHhhhchhhHHHHHHHHHHHhccccCCh---hheeeecccHHHH-hHHHHHHHHHHHHhccCChh
Confidence 45666666778899999999877766665544454 3322111111111 22334455677777665543
No 442
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=41.91 E-value=55 Score=18.38 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=17.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 207 YRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 207 ~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
|+.+-.+|.+.|++++|...+.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555677777777777777776553
No 443
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.22 E-value=2.4e+02 Score=24.42 Aligned_cols=101 Identities=7% Similarity=-0.116 Sum_probs=65.5
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS 235 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~ 235 (372)
......|.....+|+-..|+..|..+-.-.+.. .- .+-...+.-|..+...|.|+....-.+..--
T Consensus 95 LA~mr~at~~a~kgdta~AV~aFdeia~dt~~P---~~--------~rd~ARlraa~lLvD~gsy~dV~srvepLa~--- 160 (221)
T COG4649 95 LARMRAATLLAQKGDTAAAVAAFDEIAADTSIP---QI--------GRDLARLRAAYLLVDNGSYDDVSSRVEPLAG--- 160 (221)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc---ch--------hhHHHHHHHHHHHhccccHHHHHHHhhhccC---
Confidence 345567778888888888888887765442211 10 1123455556677788888887766654431
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368 236 HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARK 270 (372)
Q Consensus 236 ~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~ 270 (372)
.-+|=..-|.--+|.+-.+-|+|..|...|.....
T Consensus 161 d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 161 DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 12233444555677888888999999998888776
No 444
>KOG0739|consensus
Probab=41.00 E-value=1e+02 Score=29.04 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhh
Q psy8368 152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLIN 187 (372)
Q Consensus 152 ~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~ 187 (372)
++++..+-..+...=+.++|.+|+..|+.|++++-.
T Consensus 7 l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~ 42 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLH 42 (439)
T ss_pred HHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHH
Confidence 566677777777778899999999999999998743
No 445
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=40.69 E-value=63 Score=27.08 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=20.3
Q ss_pred cchHHHHHhccCCCCcEEEEEecCC
Q psy8368 70 LIPAFEYAILSMQKGEKSDFFASYE 94 (372)
Q Consensus 70 ~~~~le~~l~~m~~Ge~~~~~i~~~ 94 (372)
+..-|-.||++-++|+.+.|..|..
T Consensus 121 ~~SPlG~ALlGk~vGD~v~v~~p~g 145 (158)
T PRK05892 121 ADSPLGQALAGHQAGDTVTYSTPQG 145 (158)
T ss_pred cCCHHHHHHhCCCCCCEEEEEcCCC
Confidence 4456889999999999999887643
No 446
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=40.62 E-value=75 Score=26.57 Aligned_cols=25 Identities=12% Similarity=0.128 Sum_probs=20.6
Q ss_pred cchHHHHHhccCCCCcEEEEEecCC
Q psy8368 70 LIPAFEYAILSMQKGEKSDFFASYE 94 (372)
Q Consensus 70 ~~~~le~~l~~m~~Ge~~~~~i~~~ 94 (372)
+..-|-.+|++.++|+.+.+..|..
T Consensus 119 ~~SPlG~ALlGk~~GD~v~v~~p~g 143 (156)
T TIGR01461 119 IDSPLARALLKKEVGDEVVVNTPAG 143 (156)
T ss_pred CCCHHHHHHcCCCCCCEEEEEcCCC
Confidence 4556889999999999999887643
No 447
>KOG0686|consensus
Probab=40.57 E-value=3.7e+02 Score=26.43 Aligned_cols=105 Identities=14% Similarity=0.201 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc-------
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS------- 276 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~------- 276 (372)
...+..++.-|...|+++.|+..|.++-.++. ....-+..+.+.-.+-..+|+|.....+..+|..--..+.
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCT-s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCT-SAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhc-chHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 34677788889999999999999988776432 1223556778888888889999888888888866521111
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy8368 277 VRAEIDKEILKADLGNQQYQKETKARCMKMFSSSS 311 (372)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (372)
....+...|+.+.. ++|+.+.+.....-+..+.
T Consensus 229 ~kl~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d 261 (466)
T KOG0686|consen 229 AKLKCAAGLANLLL--KKYKSAAKYFLLAEFDHCD 261 (466)
T ss_pred cchHHHHHHHHHHH--HHHHHHHHHHHhCCCCccC
Confidence 11134455555544 4777777777776666665
No 448
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=39.62 E-value=89 Score=22.19 Aligned_cols=10 Identities=30% Similarity=0.165 Sum_probs=4.1
Q ss_pred HHHHHhhcCC
Q psy8368 265 LKTARKLAAK 274 (372)
Q Consensus 265 ~~~al~l~p~ 274 (372)
|.++++..|+
T Consensus 36 l~~~~~~~~~ 45 (75)
T cd02656 36 LLQALKAEKE 45 (75)
T ss_pred HHHHhccCCC
Confidence 3333444443
No 449
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.15 E-value=84 Score=27.05 Aligned_cols=50 Identities=4% Similarity=-0.054 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhc
Q psy8368 201 EYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGL 255 (372)
Q Consensus 201 ~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l 255 (372)
.++....--||.+-+|.|+|.+|...+.++. .|..-+...-+|+++.+.+
T Consensus 164 ~mR~sArEALglAa~kagd~a~A~~~F~qia-----~Da~aprnirqRAq~mldl 213 (221)
T COG4649 164 PMRHSAREALGLAAYKAGDFAKAKSWFVQIA-----NDAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred hhHHHHHHHHhHHHHhccchHHHHHHHHHHH-----ccccCcHHHHHHHHHHHHH
Confidence 3567888889999999999999999999988 4666777777888776643
No 450
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.66 E-value=2.5e+02 Score=24.38 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=9.4
Q ss_pred HHHHccCHHHHHHHHHHHH
Q psy8368 213 CYNNNKQYKLTCDCASKAL 231 (372)
Q Consensus 213 ~~~kl~~y~~Ai~~~~~aL 231 (372)
++++.|.|++|.+.+++..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 4444555555555555444
No 451
>KOG0546|consensus
Probab=38.63 E-value=20 Score=33.99 Aligned_cols=51 Identities=16% Similarity=0.020 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCH
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEW 258 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~ 258 (372)
+..|+.++..++.+.++++|+.+...+.. ..|++....-++..+-....++
T Consensus 309 tka~~Rr~~~~~~~~~~~~a~~~~~~a~~----~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 309 TKAHYRRGQAYKLLKNYDEALEDLKKAKQ----KAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred CcHHHHHHhHHHhhhchhhhHHHHHHhhc----cCcchHHHHHHHHHhhhHHHHH
Confidence 67899999999999999999999999997 8888776555555544444433
No 452
>KOG2581|consensus
Probab=38.52 E-value=4e+02 Score=26.23 Aligned_cols=108 Identities=12% Similarity=0.107 Sum_probs=68.5
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
+.|.-+.-.|....-+++|..|.+++.+|++..|.... -..+..+..-+...-+-+|++.+-.-+|+..++
T Consensus 245 e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a---------lGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~ 315 (493)
T KOG2581|consen 245 EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA---------LGFRQQVNKLMIVVELLLGEIPERSVFRQPGMR 315 (493)
T ss_pred HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh---------hhHHHHHHHHHHHHHHHcCCCcchhhhcCccHH
Confidence 34555666777777888899999999998887654210 001111211122233447888877766666443
Q ss_pred hhccCCCCchhHHHHHHHHH--HhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 233 FASHFATKDVKLFFVWGKAL--IGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 233 ~~~~~~p~~~ka~~r~a~a~--~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
.....||.+.+|- ..+..|.+.++-|..-+..+....
T Consensus 316 -------ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~ 354 (493)
T KOG2581|consen 316 -------KSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYT 354 (493)
T ss_pred -------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcch
Confidence 2345788887774 456678888888888888877765
No 453
>KOG0530|consensus
Probab=37.58 E-value=2.1e+02 Score=26.38 Aligned_cols=85 Identities=9% Similarity=-0.026 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcc-CHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHH-HHHHHHHHHHhhcCCCccHHHHHH
Q psy8368 206 VYRNLMVCYNNNK-QYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWT-SAIKHLKTARKLAAKDSVRAEIDK 283 (372)
Q Consensus 206 l~~Nla~~~~kl~-~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e-~A~~~~~~al~l~p~~~~~~~~~~ 283 (372)
++.-+=.|+..++ +..+-+.+.++++. -+|.|-..|..|-.+...+|++. .-++..+.++..+..|- -++.
T Consensus 79 VW~yRr~iL~~l~~dL~~El~~l~eI~e----~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNY---HaWs 151 (318)
T KOG0530|consen 79 VWQYRRVILRHLMSDLNKELEYLDEIIE----DNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNY---HAWS 151 (318)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH----hCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccch---hhhH
Confidence 3333444554443 46677778888876 77888888888878888888777 77888888888888887 7777
Q ss_pred HHHHHHHHHHHHHH
Q psy8368 284 EILKADLGNQQYQK 297 (372)
Q Consensus 284 ~l~~~~~~~~~~~~ 297 (372)
.-.=+-+..+.+..
T Consensus 152 hRqW~~r~F~~~~~ 165 (318)
T KOG0530|consen 152 HRQWVLRFFKDYED 165 (318)
T ss_pred HHHHHHHHHhhHHH
Confidence 77777776666543
No 454
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=37.10 E-value=51 Score=23.72 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=18.3
Q ss_pred cchHHHHHhccCCCCcEEEEEecC
Q psy8368 70 LIPAFEYAILSMQKGEKSDFFASY 93 (372)
Q Consensus 70 ~~~~le~~l~~m~~Ge~~~~~i~~ 93 (372)
+..-|-.||++.++|+.+.+.+|.
T Consensus 42 ~~SPLG~ALlG~~~Gd~v~~~~~~ 65 (77)
T PF01272_consen 42 IDSPLGKALLGKKVGDEVEVELPG 65 (77)
T ss_dssp TTSHHHHHHTT-BTT-EEEEEETT
T ss_pred ecCHHHHHhcCCCCCCEEEEEeCC
Confidence 345688999999999999999864
No 455
>KOG4459|consensus
Probab=36.99 E-value=2.4e+02 Score=27.94 Aligned_cols=44 Identities=14% Similarity=0.057 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q psy8368 243 KLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKAD 289 (372)
Q Consensus 243 ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~ 289 (372)
..|-.+=.||...|++..|++.-...+-.+|++. ++++.+.--+
T Consensus 134 ~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde---~ik~~ldyYq 177 (471)
T KOG4459|consen 134 LPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDE---DIKQNLDYYQ 177 (471)
T ss_pred hHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHH---HHHHHHHHHH
Confidence 5677888999999999999999999999999999 8877776554
No 456
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=35.99 E-value=1.6e+02 Score=21.70 Aligned_cols=35 Identities=3% Similarity=-0.065 Sum_probs=23.2
Q ss_pred cCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy8368 255 LQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGN 292 (372)
Q Consensus 255 l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~~ 292 (372)
-++...++..-.++++.+|+|+ .+...+.......
T Consensus 20 a~~~~~~l~~Al~~l~~~pdnP---~~LA~~Qa~l~ey 54 (80)
T PRK15326 20 VDNLQTQVTEALDKLAAKPSDP---ALLAAYQSKLSEY 54 (80)
T ss_pred HHHHHHHHHHHHHHhhcCCCCH---HHHHHHHHHHHHH
Confidence 3456677777777888999999 5555554444333
No 457
>KOG0529|consensus
Probab=35.86 E-value=4.3e+02 Score=25.89 Aligned_cols=79 Identities=5% Similarity=-0.060 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHccC--HHHHHHHHHHHHHhhccCCCCchhHHHHHHHHH-HhcCC---HHHHHHHHHHHHhhcCCCcc
Q psy8368 204 CRVYRNLMVCYNNNKQ--YKLTCDCASKALQFASHFATKDVKLFFVWGKAL-IGLQE---WTSAIKHLKTARKLAAKDSV 277 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~--y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~-~~l~~---~e~A~~~~~~al~l~p~~~~ 277 (372)
..+++-+..++.+... |..=+..|.++|+ .||.|..+|-.|-.+. ..... ..+=+++..+++.-++.|-
T Consensus 109 Y~aW~hR~w~L~~~p~~~~~~EL~lcek~L~----~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNY- 183 (421)
T KOG0529|consen 109 YGAWHHRKWVLQKNPHSDWNTELQLCEKALK----QDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNY- 183 (421)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHh----cCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhh-
Confidence 4677788888887654 7888999999998 9999999875443333 33333 5566778888888888876
Q ss_pred HHHHHHHHHHHH
Q psy8368 278 RAEIDKEILKAD 289 (372)
Q Consensus 278 ~~~~~~~l~~~~ 289 (372)
.++..-..+.
T Consensus 184 --saWhyRs~lL 193 (421)
T KOG0529|consen 184 --SAWHYRSLLL 193 (421)
T ss_pred --hHHHHHHHHH
Confidence 5555444443
No 458
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=35.07 E-value=1.7e+02 Score=20.89 Aligned_cols=12 Identities=17% Similarity=0.088 Sum_probs=5.3
Q ss_pred HHHHHHHhhcCC
Q psy8368 263 KHLKTARKLAAK 274 (372)
Q Consensus 263 ~~~~~al~l~p~ 274 (372)
+.|.++++..|+
T Consensus 34 e~l~~~~k~e~~ 45 (75)
T cd02678 34 EYFMHALKYEKN 45 (75)
T ss_pred HHHHHHHhhCCC
Confidence 334444445553
No 459
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=34.69 E-value=44 Score=32.36 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccC
Q psy8368 174 AVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQ 219 (372)
Q Consensus 174 A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~ 219 (372)
|....++|+.++......++ ...+.++|.+|+.+|+
T Consensus 330 a~~l~~~Al~yL~kA~d~dd----------PetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 330 AQELIKKALEYLKKAQDEDD----------PETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHHHHHHHS------------TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCC----------hhHHHHHHHHHhhhhc
Confidence 44555666666654432222 3577788888888876
No 460
>KOG4563|consensus
Probab=34.51 E-value=1.4e+02 Score=28.70 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhh
Q psy8368 151 VLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLIN 187 (372)
Q Consensus 151 ~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~ 187 (372)
.-+.+..+...|+.++..++|.+|+..|..|..++..
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~e 73 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDE 73 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHH
Confidence 4466788889999999999999999999999998754
No 461
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=34.42 E-value=4.2e+02 Score=25.27 Aligned_cols=28 Identities=14% Similarity=0.031 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy8368 244 LFFVWGKALIGLQEWTSAIKHLKTARKL 271 (372)
Q Consensus 244 a~~r~a~a~~~l~~~e~A~~~~~~al~l 271 (372)
|+|+.|......+++.+|+..++.|...
T Consensus 255 A~~~~a~~~~~~~k~GeaIa~L~~A~~~ 282 (346)
T cd09247 255 SQLYLARRLKEAGHIGVAVGVLREALRN 282 (346)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 6777777777888999999999988773
No 462
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=33.90 E-value=1.8e+02 Score=24.21 Aligned_cols=73 Identities=10% Similarity=-0.042 Sum_probs=49.2
Q ss_pred HHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 153 ~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
.........+|.+++.|+...|....+.+-.-+......-+ +. ...-..+.|..++..|+|.+|......+++
T Consensus 73 ~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lP-----L~--~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 73 PEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLP-----LA--QTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEE-----HH--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCC-----HH--hhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 45677788999999999999999887665432211100000 00 034566889999999999999999999885
No 463
>PF15469 Sec5: Exocyst complex component Sec5
Probab=32.81 E-value=1.6e+02 Score=24.99 Aligned_cols=46 Identities=17% Similarity=0.173 Sum_probs=28.1
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCc-cHHHHHHHHHHHHHHHHHHHH
Q psy8368 252 LIGLQEWTSAIKHLKTARKLAAKDS-VRAEIDKEILKADLGNQQYQK 297 (372)
Q Consensus 252 ~~~l~~~e~A~~~~~~al~l~p~~~-~~~~~~~~l~~~~~~~~~~~~ 297 (372)
+...|+|+.|+.+|.+|..+--... ......+-...+...+..++.
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~ 142 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFRE 142 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999988887754331 011455555555555555443
No 464
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=31.78 E-value=1.6e+02 Score=27.08 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHhhccCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 219 QYKLTCDCASKALQFASHFATK--DVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 219 ~y~~Ai~~~~~aL~~~~~~~p~--~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
....|.++++.||-.++..... -.-..+|++.+|+.+.+|+.|.-+|.+|+.+--++.
T Consensus 54 ~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~ 113 (368)
T COG5091 54 TMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDT 113 (368)
T ss_pred ChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhccc
Confidence 4567888888888543322111 122578999999999999999999999999855543
No 465
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=31.63 E-value=1.2e+02 Score=24.13 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=27.3
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLIN 187 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~ 187 (372)
.=...-..|..+...|++.+|+.+|-+||.+++.
T Consensus 62 ~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 62 FFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 3445557888899999999999999999999754
No 466
>PF13041 PPR_2: PPR repeat family
Probab=31.57 E-value=1.4e+02 Score=18.94 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
..|+-+-.+|.+.|++++|...+++-.+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566677778888888888888887775
No 467
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.56 E-value=1.9e+02 Score=21.73 Aligned_cols=39 Identities=18% Similarity=0.092 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhh
Q psy8368 147 AFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLL 185 (372)
Q Consensus 147 ~~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~ 185 (372)
..+..++.+..|..-+.-++.+|++-.|+.+..-|-..+
T Consensus 33 ~ae~~~~ma~~Y~~Dakyf~ekGD~vtAfa~~sYa~g~l 71 (90)
T COG1849 33 AAEDFVDMAESYFEDAKYFLEKGDYVTAFAALSYAHGWL 71 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999876665444
No 468
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=31.30 E-value=2.9e+02 Score=22.96 Aligned_cols=114 Identities=11% Similarity=-0.111 Sum_probs=69.9
Q ss_pred HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhc----cCCC----------------hH----HHHHHHHHHHHHHHHHHH
Q psy8368 157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINT----QVTN----------------YE----DQMQLEEYLCRVYRNLMV 212 (372)
Q Consensus 157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~----~~~~----------------~~----~~~~~~~l~~~l~~Nla~ 212 (372)
..-..+...+..|+.+.|.....+|...+... +... +. ...-.-..........+.
T Consensus 4 ~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~ 83 (155)
T PF10938_consen 4 RDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTAN 83 (155)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHH
Confidence 44456777888899999999999988776321 0000 00 000011112456667888
Q ss_pred HHHHccCHHHHHHHHHHHHHhhc----cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368 213 CYNNNKQYKLTCDCASKALQFAS----HFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARK 270 (372)
Q Consensus 213 ~~~kl~~y~~Ai~~~~~aL~~~~----~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~ 270 (372)
-+++.|+...|+....-+-.-.. .+.=.........|..++..|+|.+|...+..|+.
T Consensus 84 ~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 84 ELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 99999999999988776531000 00011234566789999999999999999998874
No 469
>KOG4563|consensus
Probab=31.07 E-value=87 Score=30.01 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=46.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhhccCC----CCchhHHHHHHHHHHhcCCHHHHHHHHH
Q psy8368 207 YRNLMVCYNNNKQYKLTCDCASKALQFASHFA----TKDVKLFFVWGKALIGLQEWTSAIKHLK 266 (372)
Q Consensus 207 ~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~----p~~~ka~~r~a~a~~~l~~~e~A~~~~~ 266 (372)
+.-.|+-++..++|++|...+..|..+...+. -.+..++|-.|++++.+++++.+.-..-
T Consensus 44 lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~na 107 (400)
T KOG4563|consen 44 LVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNA 107 (400)
T ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34456777788999999999999987554332 3377899999999999999888774443
No 470
>PRK11619 lytic murein transglycosylase; Provisional
Probab=31.05 E-value=3.8e+02 Score=28.07 Aligned_cols=54 Identities=7% Similarity=-0.093 Sum_probs=41.8
Q ss_pred HHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368 213 CYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARK 270 (372)
Q Consensus 213 ~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~ 270 (372)
..+..++|..+..++...-. ........+|++|+++..+|+.++|...|.++..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~----~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPM----EAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHccCHHHHHHHHHhcCH----hhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34468888877776665332 2335778999999999999999999999999853
No 471
>KOG2582|consensus
Probab=30.82 E-value=85 Score=30.14 Aligned_cols=103 Identities=16% Similarity=0.198 Sum_probs=66.4
Q ss_pred HHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hh-
Q psy8368 157 ELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ-FA- 234 (372)
Q Consensus 157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~-~~- 234 (372)
..+..++...+.+.....+....+|+..+.... .....++.-+.+|.++.++|.-+..+.+--+- ++
T Consensus 104 lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~-----------~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~ 172 (422)
T KOG2582|consen 104 LCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSN-----------GQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICK 172 (422)
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHHHhccCc-----------cchhhhHHHHHHHHHHhhcccccCCccchhHHHHhc
Confidence 344556666666666666666677776553321 12367888889999999999888776654331 11
Q ss_pred --ccCCCCchhHH-HHHHHHHHhcCCHHHHHHHHHHHHh
Q psy8368 235 --SHFATKDVKLF-FVWGKALIGLQEWTSAIKHLKTARK 270 (372)
Q Consensus 235 --~~~~p~~~ka~-~r~a~a~~~l~~~e~A~~~~~~al~ 270 (372)
+.++|...--| |.-|..|..+++|+.|+..|..++-
T Consensus 173 ~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 173 ANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred cCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 11333333333 3446778899999999999988864
No 472
>KOG0890|consensus
Probab=30.61 E-value=1.1e+03 Score=28.92 Aligned_cols=88 Identities=11% Similarity=0.026 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHH
Q psy8368 171 IVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGK 250 (372)
Q Consensus 171 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~ 250 (372)
..+-+-.+++++-.....+ ..+.....+|++.|....+.|+++.|-.+.-.|.+ . .-++++.-+|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~--------~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e----~--r~~~i~~E~AK 1710 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRS--------NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE----S--RLPEIVLERAK 1710 (2382)
T ss_pred HHhHHHHHHHHHHHHhccc--------cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh----c--ccchHHHHHHH
Confidence 4444555555554432221 22334478999999999999999999999998886 3 36789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhc
Q psy8368 251 ALIGLQEWTSAIKHLKTARKLA 272 (372)
Q Consensus 251 a~~~l~~~e~A~~~~~~al~l~ 272 (372)
.+-..|+-..|+..++..+.++
T Consensus 1711 ~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1711 LLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHhhccHHHHHHHHHHHHHhh
Confidence 9999999999999999999765
No 473
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=30.47 E-value=2.1e+02 Score=20.61 Aligned_cols=14 Identities=7% Similarity=0.313 Sum_probs=6.7
Q ss_pred CCHHHHHHHHHHHH
Q psy8368 256 QEWTSAIKHLKTAR 269 (372)
Q Consensus 256 ~~~e~A~~~~~~al 269 (372)
|+|++|+..|..++
T Consensus 20 ~~y~eA~~~Y~~~i 33 (75)
T cd02677 20 GDYEAAFEFYRAGV 33 (75)
T ss_pred hhHHHHHHHHHHHH
Confidence 45554444444444
No 474
>KOG0739|consensus
Probab=29.96 E-value=2.1e+02 Score=27.02 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhcCCC
Q psy8368 260 SAIKHLKTARKLAAKD 275 (372)
Q Consensus 260 ~A~~~~~~al~l~p~~ 275 (372)
-|+++|..+++...++
T Consensus 35 ~aleYF~~~lKYE~~~ 50 (439)
T KOG0739|consen 35 NALEYFLHALKYEANN 50 (439)
T ss_pred HHHHHHHHHHHhhhcC
Confidence 3444444444444333
No 475
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=29.91 E-value=3.5e+02 Score=23.02 Aligned_cols=88 Identities=6% Similarity=-0.025 Sum_probs=48.0
Q ss_pred HHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368 212 VCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG 291 (372)
Q Consensus 212 ~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~ 291 (372)
.++..-..+-..+.....++ + |--..++|+.++-|-..-=...+...++...++||. ++.++...+..-..+
T Consensus 73 L~lWnNe~i~~LI~~N~~~I-----l-PIifpaL~~ns~~HWN~~V~~lt~nvlK~f~emD~~--LF~ec~~~~ke~~~~ 144 (170)
T PLN00122 73 LFLWNNDHIVNLIAQNRQVI-----L-PIIFPALEKNTRGHWNQAVHGLTLNVRKMFSEMDPE--LFEECLRKFEEDEAK 144 (170)
T ss_pred HHHHccHHHHHHHHHhhhhh-----H-HHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHH
Confidence 33333333334444444444 2 555567777777766555455566667777777774 233555555554444
Q ss_pred HHHHHHHHHHHHHhhc
Q psy8368 292 NQQYQKETKARCMKMF 307 (372)
Q Consensus 292 ~~~~~~~~~~~~~~~~ 307 (372)
.+....+.+..|+++.
T Consensus 145 ~~~~~~~r~~~W~~le 160 (170)
T PLN00122 145 AKEVEEKREATWKRLE 160 (170)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444445555666554
No 476
>KOG2114|consensus
Probab=29.49 E-value=3.3e+02 Score=29.29 Aligned_cols=35 Identities=6% Similarity=0.094 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCc
Q psy8368 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD 241 (372)
Q Consensus 204 ~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~ 241 (372)
..++...|.-+++.|+|++|..+|-+++. .++|..
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~---~le~s~ 402 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIG---FLEPSE 402 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcc---cCChHH
Confidence 56777888889999999999999999986 355543
No 477
>KOG0529|consensus
Probab=29.49 E-value=5.5e+02 Score=25.18 Aligned_cols=73 Identities=10% Similarity=0.014 Sum_probs=56.7
Q ss_pred HHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368 214 YNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQ--EWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG 291 (372)
Q Consensus 214 ~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~--~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~ 291 (372)
..+..-+++-+.+...+|+ .+|+.--+|+.|..++...+ ++..=+..+.+++++||.|- .++..-.-+...
T Consensus 85 ~ek~~~ld~eL~~~~~~L~----~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNf---h~W~YRRfV~~~ 157 (421)
T KOG0529|consen 85 LEKQALLDEELKYVESALK----VNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNF---HAWHYRRFVVEQ 157 (421)
T ss_pred HHHHHhhHHHHHHHHHHHH----hCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccc---cchHHHHHHHHH
Confidence 3444567888888999998 89999999999999999776 36777888999999999987 555554444444
Q ss_pred HH
Q psy8368 292 NQ 293 (372)
Q Consensus 292 ~~ 293 (372)
.+
T Consensus 158 ~~ 159 (421)
T KOG0529|consen 158 AE 159 (421)
T ss_pred Hh
Confidence 33
No 478
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=29.38 E-value=4.9e+02 Score=24.55 Aligned_cols=52 Identities=10% Similarity=0.080 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhhccCCC-------------CchhHHHHHHHHHHhcC-----CHHHHHHHHHHHHhh
Q psy8368 220 YKLTCDCASKALQFASHFAT-------------KDVKLFFVWGKALIGLQ-----EWTSAIKHLKTARKL 271 (372)
Q Consensus 220 y~~Ai~~~~~aL~~~~~~~p-------------~~~ka~~r~a~a~~~l~-----~~e~A~~~~~~al~l 271 (372)
|+..+.+++.|+..++.... ...-|+.-+|++|+..+ ++++|+.....++.-
T Consensus 141 y~~i~~dL~~A~~~L~~~~~~~~~~~~~~~~r~~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~~ 210 (359)
T cd08977 141 YTQILADLDEAIALLPEASSAQDFYIYFGDGRAWKKAARALLARVYLYLANYTAADYAEALTAAEKSFKG 210 (359)
T ss_pred HHHHHHHHHHHHHhccccccccccccccCcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 56666777777663322111 11225667788888888 799999999988864
No 479
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.53 E-value=1.2e+02 Score=20.85 Aligned_cols=21 Identities=5% Similarity=-0.046 Sum_probs=11.5
Q ss_pred HHHHHccCHHHHHHHHHHHHH
Q psy8368 212 VCYNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 212 ~~~~kl~~y~~Ai~~~~~aL~ 232 (372)
.-|+.+|++++|.+++.....
T Consensus 31 ~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 31 YGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 345556666666666665553
No 480
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=28.27 E-value=2e+02 Score=23.91 Aligned_cols=24 Identities=13% Similarity=0.219 Sum_probs=20.0
Q ss_pred ccchHHHHHhccCCCCcEEEEEec
Q psy8368 69 GLIPAFEYAILSMQKGEKSDFFAS 92 (372)
Q Consensus 69 ~~~~~le~~l~~m~~Ge~~~~~i~ 92 (372)
.+..-+-.+|.+.++|+.+.+..|
T Consensus 114 S~~SPig~aLlGk~vGd~v~v~~p 137 (151)
T COG0782 114 SVDSPLGRALLGKKVGDTVEVNTP 137 (151)
T ss_pred eccCHHHHHHhCCCCCCEEEEecC
Confidence 344567899999999999998876
No 481
>KOG1920|consensus
Probab=28.21 E-value=3.9e+02 Score=29.98 Aligned_cols=25 Identities=4% Similarity=-0.002 Sum_probs=20.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q psy8368 207 YRNLMVCYNNNKQYKLTCDCASKAL 231 (372)
Q Consensus 207 ~~Nla~~~~kl~~y~~Ai~~~~~aL 231 (372)
+.+.|..|.+.|+.++|+..+..+.
T Consensus 955 ~~~Aal~Ye~~GklekAl~a~~~~~ 979 (1265)
T KOG1920|consen 955 SDEAALMYERCGKLEKALKAYKECG 979 (1265)
T ss_pred ccHHHHHHHHhccHHHHHHHHHHhc
Confidence 4567888999999999999887655
No 482
>KOG4521|consensus
Probab=27.14 E-value=5.4e+02 Score=28.99 Aligned_cols=117 Identities=13% Similarity=0.081 Sum_probs=69.0
Q ss_pred HHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhcc---------CC---ChHHHHHHH-HH-HHHHHHHHHHHHHHccCHH
Q psy8368 156 QELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ---------VT---NYEDQMQLE-EY-LCRVYRNLMVCYNNNKQYK 221 (372)
Q Consensus 156 ~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~---------~~---~~~~~~~~~-~l-~~~l~~Nla~~~~kl~~y~ 221 (372)
...+..|..+...|...+|+.+|.+|..-..... .+ .-.+..... +. ....|...-+.+-.-+..+
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E 1000 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAE 1000 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHH
Confidence 3455678888889999999999999875432110 00 000000000 01 1234444445566677788
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 222 LTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 222 ~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
.+++.+..||+.++.-+|.-+-.+...-+-+..+|.+.+|...+ --+|+..
T Consensus 1001 ~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdse 1051 (1480)
T KOG4521|consen 1001 EVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSE 1051 (1480)
T ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHH
Confidence 99999999998433333333333445666788899999987544 3456544
No 483
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=27.06 E-value=1.4e+02 Score=25.85 Aligned_cols=65 Identities=9% Similarity=0.018 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhhccCCCC-----chhHH--HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy8368 220 YKLTCDCASKALQFASHFATK-----DVKLF--FVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLG 291 (372)
Q Consensus 220 y~~Ai~~~~~aL~~~~~~~p~-----~~ka~--~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l~~~~~~ 291 (372)
.+.|+..++..-+ ..++. ..+-+ -....++++.|.|++|.+.+++... +|++. ..+..|..+-+.
T Consensus 85 LESAl~v~~~I~~---E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~---~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEK---EFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQ---KLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCch---hHHHHHHHHHHc
Confidence 5667766665544 22221 11112 2345568999999999999999999 88888 666666655443
No 484
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=27.00 E-value=3.2e+02 Score=21.70 Aligned_cols=86 Identities=9% Similarity=0.061 Sum_probs=55.3
Q ss_pred cCHHHHHHHHHHHHHhhhhccC-CChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHH
Q psy8368 169 KNIVSAVRRYRDAVKLLINTQV-TNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFV 247 (372)
Q Consensus 169 g~~~~A~~~y~~al~~~~~~~~-~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r 247 (372)
+.-..-...+.+++..+...+. .++ .-+..+-.-|.++-+ .+...+.....- .+.-..+.-|-.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD-----------~RylkiWi~ya~~~~--~~~~if~~l~~~--~IG~~~A~fY~~ 104 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKND-----------ERYLKIWIKYADLSS--DPREIFKFLYSK--GIGTKLALFYEE 104 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT------------HHHHHHHHHHHTTBS--HHHHHHHHHHHH--TTSTTBHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCC-----------HHHHHHHHHHHHHcc--CHHHHHHHHHHc--CccHHHHHHHHH
Confidence 4444456677777777755421 122 234455555555554 666666665531 255667777778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q psy8368 248 WGKALIGLQEWTSAIKHLKTAR 269 (372)
Q Consensus 248 ~a~a~~~l~~~e~A~~~~~~al 269 (372)
.|..+...|++.+|.+.|++++
T Consensus 105 wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 105 WAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhhC
Confidence 8999999999999999999875
No 485
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=26.99 E-value=96 Score=21.53 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=21.3
Q ss_pred CeEEEcCCC---ccchHHHHHhccCCCCcEEEEEecCC
Q psy8368 60 PERFQLGSS---GLIPAFEYAILSMQKGEKSDFFASYE 94 (372)
Q Consensus 60 ~~~~~~g~~---~~~~~le~~l~~m~~Ge~~~~~i~~~ 94 (372)
..++.++.. .--+-+..|+..|+.||++.|...+.
T Consensus 20 ~~tl~vDg~~v~~PD~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 20 NATLIVDGEIVENPDAELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp T--EEETTEEESS--HHHHHHHTT-BTT-EEEEEETTS
T ss_pred ceEEEEcCeEcCCCCHHHHHHHHHhhcCceeEEEEecC
Confidence 345555432 22366889999999999999988654
No 486
>KOG1258|consensus
Probab=26.77 E-value=7.2e+02 Score=25.60 Aligned_cols=154 Identities=2% Similarity=-0.164 Sum_probs=84.8
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChH----------HHHHHHHHH----------HHHHHHHHHH
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYE----------DQMQLEEYL----------CRVYRNLMVC 213 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~----------~~~~~~~l~----------~~l~~Nla~~ 213 (372)
....+......-...|+|......|.+++--+......|-. .......++ ..++.--|..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34455555666667888888888888887544222111000 000000000 1222223333
Q ss_pred HHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHH---HHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy8368 214 YNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIK---HLKTARKLAAKDSVRAEIDKEILKADL 290 (372)
Q Consensus 214 ~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~---~~~~al~l~p~~~~~~~~~~~l~~~~~ 290 (372)
--..|++..|...++.... .+ |+.+.+-++.+.....+|+.+.+.. .+.....-.-++...+...-...++..
T Consensus 376 ~e~~~n~~~A~~~lq~i~~---e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIES---EY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHhhccHHHHHHHHHHHHh---hC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 3345688888888888876 44 8888888888888888888888774 222222222222233344445555556
Q ss_pred HHHHHHHHHHHHHHhhccCCC
Q psy8368 291 GNQQYQKETKARCMKMFSSSS 311 (372)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~ 311 (372)
.+.......+....++.....
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~ 472 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILP 472 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCC
Confidence 666666666666666554443
No 487
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=26.33 E-value=1.5e+02 Score=23.70 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=12.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCC
Q psy8368 248 WGKALIGLQEWTSAIKHLKTARKLAAK 274 (372)
Q Consensus 248 ~a~a~~~l~~~e~A~~~~~~al~l~p~ 274 (372)
+|..++..|++++|..+|-+|+.+.|+
T Consensus 69 lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 69 LGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 444444445555555555555555444
No 488
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=25.99 E-value=5.3e+02 Score=23.81 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=21.5
Q ss_pred HHHHHHHhhHHHHhccCHHHHHHHHHHHHHhh
Q psy8368 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLL 185 (372)
Q Consensus 154 ~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~ 185 (372)
.+......-+.++..|+|..|+..+...-..+
T Consensus 126 ~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l 157 (291)
T PF10475_consen 126 TVQQTQSRLQELLEEGDYPGALDLIEECQQLL 157 (291)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 34444456666777888888888777766654
No 489
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=25.94 E-value=1.1e+02 Score=29.82 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCH
Q psy8368 220 YKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEW 258 (372)
Q Consensus 220 y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~ 258 (372)
...|+.++++|.. .+.+..|.+.|-|++.+|+.
T Consensus 334 ~~~Al~yL~kA~d------~ddPetWv~vAEa~I~LGNL 366 (404)
T PF12753_consen 334 IKKALEYLKKAQD------EDDPETWVDVAEAMIDLGNL 366 (404)
T ss_dssp HHHHHHHHHHHHH------S--TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc------cCChhHHHHHHHHHhhhhcc
Confidence 5566677777653 56778899999999988863
No 490
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=25.89 E-value=1.5e+02 Score=17.65 Aligned_cols=26 Identities=8% Similarity=0.190 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHHHHhhccCCCCchhHHHHHH
Q psy8368 219 QYKLTCDCASKALQFASHFATKDVKLFFVWG 249 (372)
Q Consensus 219 ~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a 249 (372)
.++.|...|++.+. ..| +++.|.+.|
T Consensus 2 E~dRAR~IyeR~v~----~hp-~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVL----VHP-EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHH----hCC-CchHHHHHH
Confidence 34555555555554 332 345555444
No 491
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=25.77 E-value=1.4e+02 Score=16.99 Aligned_cols=25 Identities=20% Similarity=0.112 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhccCCCCchhHHHHHHHHH
Q psy8368 224 CDCASKALQFASHFATKDVKLFFVWGKAL 252 (372)
Q Consensus 224 i~~~~~aL~~~~~~~p~~~ka~~r~a~a~ 252 (372)
+..+..++. .+|.|--++.-|-.+.
T Consensus 3 l~~~~~~l~----~~pknys~W~yR~~ll 27 (31)
T PF01239_consen 3 LEFTKKALE----KDPKNYSAWNYRRWLL 27 (31)
T ss_dssp HHHHHHHHH----HSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH----HCcccccHHHHHHHHH
Confidence 455666665 6666666666554443
No 492
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=25.68 E-value=2.6e+02 Score=27.92 Aligned_cols=58 Identities=3% Similarity=0.020 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8368 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTAR 269 (372)
Q Consensus 205 ~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al 269 (372)
.+++.-...++..++-+.|+....++++ ..|. ..++++.+|...++-++...+|.++.
T Consensus 303 evw~dys~Y~~~isd~q~al~tv~rg~~----~sps---L~~~lse~yel~nd~e~v~~~fdk~~ 360 (660)
T COG5107 303 EVWFDYSEYLIGISDKQKALKTVERGIE----MSPS---LTMFLSEYYELVNDEEAVYGCFDKCT 360 (660)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHhccc----CCCc---hheeHHHHHhhcccHHHHhhhHHHHH
Confidence 4455555556666777777777777775 4443 77889999988888777777776654
No 493
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=25.52 E-value=1.4e+02 Score=21.62 Aligned_cols=19 Identities=5% Similarity=0.074 Sum_probs=12.2
Q ss_pred HHHccCHHHHHHHHHHHHH
Q psy8368 214 YNNNKQYKLTCDCASKALQ 232 (372)
Q Consensus 214 ~~kl~~y~~Ai~~~~~aL~ 232 (372)
--..|+|++|+..|..+|+
T Consensus 16 eD~~gny~eA~~lY~~ale 34 (75)
T cd02680 16 EDEKGNAEEAIELYTEAVE 34 (75)
T ss_pred hhHhhhHHHHHHHHHHHHH
Confidence 3345667777777777765
No 494
>KOG1258|consensus
Probab=25.03 E-value=7.7e+02 Score=25.38 Aligned_cols=75 Identities=11% Similarity=-0.011 Sum_probs=43.9
Q ss_pred HHHHHHccCHHHHHH---HHHHHHHhhccCCCC-chhHHHHHHHHH-HhcCCHHHHHHHHHHHHhhcCCCccHHHHHHHH
Q psy8368 211 MVCYNNNKQYKLTCD---CASKALQFASHFATK-DVKLFFVWGKAL-IGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEI 285 (372)
Q Consensus 211 a~~~~kl~~y~~Ai~---~~~~aL~~~~~~~p~-~~ka~~r~a~a~-~~l~~~e~A~~~~~~al~l~p~~~~~~~~~~~l 285 (372)
+.....+++.+.+.. .+..... ...++. ..+-+...++-. .-.++-+.|...+..++.+.|.+. .....+
T Consensus 407 ~~~e~r~~~~~~~~~~~~l~s~~~~--~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k---~~~~~~ 481 (577)
T KOG1258|consen 407 INWERRKGNLEDANYKNELYSSIYE--GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCK---VLYLEL 481 (577)
T ss_pred HhHHHHhcchhhhhHHHHHHHHhcc--cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccH---HHHHHH
Confidence 344445666666663 2222221 011122 344555555554 345788999999999999999998 555555
Q ss_pred HHHHH
Q psy8368 286 LKADL 290 (372)
Q Consensus 286 ~~~~~ 290 (372)
..+..
T Consensus 482 ~~~~~ 486 (577)
T KOG1258|consen 482 IRFEL 486 (577)
T ss_pred HHHHH
Confidence 44443
No 495
>PF14762 HPS3_Mid: Hermansky-Pudlak syndrome 3, middle region
Probab=24.81 E-value=6.1e+02 Score=24.57 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH--ccCHHHHHH
Q psy8368 148 FAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNN--NKQYKLTCD 225 (372)
Q Consensus 148 ~~~~~~~~~~~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~k--l~~y~~Ai~ 225 (372)
+.++++.++.++..-...+ ..-..+|.-..+.++ ++.. ...++...++.++...-...+|-||.+ .++|..|+.
T Consensus 231 y~dm~e~A~~yk~~~~~~y-~hLL~EaHlLLRsaL--~~~~-~~~~~~~~eL~~l~reSca~LGD~~~r~~~~d~~lA~p 306 (374)
T PF14762_consen 231 YKDMVEYANSYKTASPQSY-HHLLSEAHLLLRSAL--LDPS-QEESEEKNELRELFRESCALLGDCYSRSDEKDYHLAAP 306 (374)
T ss_pred HHHHHHHHHHhccCChHHH-HHHHHHHHHHHHHHh--hhhh-hcccchHHHHHHHHHHHHHHHHhHhhccchHHHHHHHH
Confidence 3466677777765433333 244556666666666 1111 111223445666666677789999999 888999999
Q ss_pred HHHHHH
Q psy8368 226 CASKAL 231 (372)
Q Consensus 226 ~~~~aL 231 (372)
+|...=
T Consensus 307 YYkMS~ 312 (374)
T PF14762_consen 307 YYKMSG 312 (374)
T ss_pred HHHhcC
Confidence 998663
No 496
>KOG1920|consensus
Probab=24.49 E-value=1.1e+03 Score=26.79 Aligned_cols=93 Identities=10% Similarity=0.089 Sum_probs=47.8
Q ss_pred HHHHhhHHHHhccCHHHHHHHHHHHHHh------hhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy8368 157 ELGASGKNAFNDKNIVSAVRRYRDAVKL------LINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKA 230 (372)
Q Consensus 157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~------~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~a 230 (372)
.+.+.|-.|-+.|+.++|+..|..+... ........ +....+-.-++.-+...+++-+|-......
T Consensus 954 ~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~--------de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 954 MSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGK--------DELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred cccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCH--------HHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 3445566666777777777777554422 11110000 111222345566666778888888777777
Q ss_pred HHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8368 231 LQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTA 268 (372)
Q Consensus 231 L~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~a 268 (372)
+ -+|..+-+.+-.| ..|++|+....++
T Consensus 1026 ~-----sd~~~av~ll~ka------~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1026 L-----SDPEEAVALLCKA------KEWEEALRVASKA 1052 (1265)
T ss_pred h-----cCHHHHHHHHhhH------hHHHHHHHHHHhc
Confidence 7 3554443333333 3445555444333
No 497
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=23.95 E-value=4.3e+02 Score=22.05 Aligned_cols=83 Identities=12% Similarity=-0.112 Sum_probs=53.5
Q ss_pred HHHHhhHHHHhccCHHHHHHHHHHHHHhh-hhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Q psy8368 157 ELGASGKNAFNDKNIVSAVRRYRDAVKLL-INTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFAS 235 (372)
Q Consensus 157 ~~k~~Gn~~~~~g~~~~A~~~y~~al~~~-~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~ 235 (372)
.+.+.........++.++..... |++.+ |.. ..+..--+..++..|+|.+|+..++.+.+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLd-ALrvLrP~~---------------~e~d~~dg~l~i~rg~w~eA~rvlr~l~~--- 72 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLD-ALRVLRPNL---------------KELDMFDGWLLIARGNYDEAARILRELLS--- 72 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH-HHHHhCCCc---------------cccchhHHHHHHHcCCHHHHHHHHHhhhc---
Confidence 33444444444666666655543 33333 322 22333457788999999999999999985
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHH
Q psy8368 236 HFATKDVKLFFVWGKALIGLQEWT 259 (372)
Q Consensus 236 ~~~p~~~ka~~r~a~a~~~l~~~e 259 (372)
-.+..+-+.--++.|+..+|+.+
T Consensus 73 -~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 73 -SAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred -cCCCchHHHHHHHHHHHhcCChH
Confidence 44455666667789999999753
No 498
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=23.94 E-value=6e+02 Score=23.71 Aligned_cols=114 Identities=9% Similarity=0.048 Sum_probs=70.5
Q ss_pred HHHhhHHHHhccCHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhccC
Q psy8368 158 LGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHF 237 (372)
Q Consensus 158 ~k~~Gn~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~l~~~l~~Nla~~~~kl~~y~~Ai~~~~~aL~~~~~~ 237 (372)
+-+.+..++-..+|..|+...+++++.+.......+. .....+++..+..==-+|+..+++|.+++.+..+-.+..+.+
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~-~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl 116 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEP-AGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC
Confidence 3345556677889999999999999988443211111 112223333333333367889999999999887777522222
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCc
Q psy8368 238 ATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS 276 (372)
Q Consensus 238 ~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~ 276 (372)
-+|.+----..|.+.++....++ .-.+---+|+|.
T Consensus 117 ---PpkIleLCILLysKv~Ep~amle-v~~~WL~~p~Nq 151 (309)
T PF07163_consen 117 ---PPKILELCILLYSKVQEPAAMLE-VASAWLQDPSNQ 151 (309)
T ss_pred ---CHHHHHHHHHHHHHhcCHHHHHH-HHHHHHhCcccC
Confidence 23444444455778888776654 444555678776
No 499
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=23.90 E-value=5.1e+02 Score=22.94 Aligned_cols=98 Identities=6% Similarity=-0.066 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHH-HHHhhccCCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCccHHHHH
Q psy8368 205 RVYRNLMVCYNN-NKQYKLTCDCASK-ALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEID 282 (372)
Q Consensus 205 ~l~~Nla~~~~k-l~~y~~Ai~~~~~-aL~~~~~~~p~~~ka~~r~a~a~~~l~~~e~A~~~~~~al~l~p~~~~~~~~~ 282 (372)
....+-|..|.. ...|-+++...-. +|- .-||....++.+.|.+...+..+-.-+-.=-.-.-..|.+. -++
T Consensus 26 k~~~~sG~~yv~~~~~f~~~L~~LG~~~l~---~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s---~lK 99 (215)
T cd07642 26 KAIHTSGLAHVENEEQYTQALEKFGSNCVC---RDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDS---LLK 99 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHH
Confidence 344455555554 3346666666665 332 24566777888888888887766554422222222356555 566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8368 283 KEILKADLGNQQYQKETKARCMKMFS 308 (372)
Q Consensus 283 ~~l~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
..|..++..+++.=.+..+.|..++.
T Consensus 100 ~dLr~vK~d~KK~fdK~~~dyE~~~~ 125 (215)
T cd07642 100 GDLKGVKGDLKKPFDKAWKDYETKVT 125 (215)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 67777765555544555555555543
No 500
>KOG3616|consensus
Probab=23.46 E-value=3.8e+02 Score=28.57 Aligned_cols=23 Identities=9% Similarity=-0.123 Sum_probs=12.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHH
Q psy8368 208 RNLMVCYNNNKQYKLTCDCASKA 230 (372)
Q Consensus 208 ~Nla~~~~kl~~y~~Ai~~~~~a 230 (372)
-..|.-+-..|+|+.|+.++-+|
T Consensus 710 e~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 710 EAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred HHHhHHHHHHHhHHHHHHHHHHh
Confidence 33444455556666666666554
Done!