RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8368
(372 letters)
>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase.
Length = 94
Score = 68.0 bits (167), Expect = 2e-14
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 27 ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEK 86
E G V VHY E + D + R P F LGS +IP ++ +L M+ GEK
Sbjct: 3 EKAKKGDTVTVHYTGKLE-DGTVFDSSKDRGK-PFEFTLGSGQVIPGWDEGLLGMKVGEK 60
Query: 87 SDFFASYELCFGALGC-PPRIPAKADLLFEVHLI 119
EL +G G IP A L+FEV L+
Sbjct: 61 RKLTIPPELAYGEEGLAGGVIPPNATLVFEVELL 94
>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1
[Posttranslational modification, protein turnover,
chaperones].
Length = 205
Score = 55.9 bits (135), Expect = 3e-09
Identities = 36/114 (31%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 10 QIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELP----IDITYLRKSIPERFQL 65
+ L K+ + G G P G V VHY L D +Y R P F L
Sbjct: 97 KTLPSGLQYKVLKAGDGAAPKKGDTVTVHY-----TGTLIDGTVFDSSYDRGQ-PAEFPL 150
Query: 66 GSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLI 119
G G+IP ++ + M+ G K EL +G G P IP + L+FEV L+
Sbjct: 151 G--GVIPGWDEGLQGMKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELL 202
>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase;
Provisional.
Length = 206
Score = 37.9 bits (88), Expect = 0.004
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 12/108 (11%)
Query: 16 LMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSI----PERFQLGSSGLI 71
L ++ +G G P V+VHY +L ID T S+ P F + +G+I
Sbjct: 104 LQFRVLTQGEGAIPARTDRVRVHY-----TGKL-IDGTVFDSSVARGEPAEFPV--NGVI 155
Query: 72 PAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLI 119
P + A+ M G K + +EL +G G IP + L+FEV L+
Sbjct: 156 PGWIEALTLMPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELL 203
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found
in a variety of organisms including bacteria,
cyanobacteria, yeast, fungi, plants, and humans in
various subcellular locations; involved in a variety of
functions including protein-protein interactions, but
common features in the interaction partners have not
been defined; involved in chaperone, cell-cycle,
transciption, and protein transport complexes; the
number of TPR motifs varies among proteins (1,3-11,13
15,16,19); 5-6 tandem repeats generate a right-handed
helical structure with an amphipathic channel that is
thought to accomodate an alpha-helix of a target
protein; it has been proposed that TPR proteins
preferably interact with WD-40 repeat proteins, but in
many instances several TPR-proteins seem to aggregate to
multi-protein complexes; examples of TPR-proteins
include, Cdc16p, Cdc23p and Cdc27p components of the
cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal
targeting signals, the Tom70p co-receptor for
mitochondrial targeting signals, Ser/Thr phosphatase 5C
and the p110 subunit of O-GlcNAc transferase; three
copies of the repeat are present here.
Length = 100
Score = 32.7 bits (75), Expect = 0.066
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKH 264
Y NL Y +Y+ + KAL+ A K ++ G A L ++ A++
Sbjct: 35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA----KAYYNLGLAYYKLGKYEEALEA 90
Query: 265 LKTARKL 271
+ A +L
Sbjct: 91 YEKALEL 97
>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase;
Provisional.
Length = 269
Score = 33.6 bits (77), Expect = 0.13
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 16 LMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFE 75
L+ K++++G GE P V V+Y + D +Y R P F+L G+IP +
Sbjct: 148 LLYKVEKEGTGEAPKDSDTVVVNYKG-TLIDGKEFDNSYTRGE-PLSFRL--DGVIPGWT 203
Query: 76 YAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQ 126
+ +++KG K EL +G G P IPA + L+F+V L++ P+
Sbjct: 204 EGLKNIKKGGKIKLVIPPELAYGKAGVP-GIPANSTLVFDVELLDVKPAPK 253
>gnl|CDD|235007 PRK02134, PRK02134, hypothetical protein; Provisional.
Length = 249
Score = 31.5 bits (72), Expect = 0.52
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 120 NFSIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELG 159
N P +RSS SDF +V E F ++L R++ G
Sbjct: 155 NAGDLPANLRSSDGFSSDFYGEEVSEDLFLQLLDRSKHRG 194
>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat.
Length = 69
Score = 29.2 bits (66), Expect = 0.59
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 206 VYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQE-WTSAIKH 264
+NL Y + KAL+ A + ++ A + L + + A++
Sbjct: 5 ALKNLGNALFKLGDYDEAIEAYEKALELDPDNA----EAYYNLALAYLKLGKDYEEALED 60
Query: 265 LKTARKLA 272
L+ A +L
Sbjct: 61 LEKALELD 68
>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2
[Posttranslational modification, protein turnover,
chaperones].
Length = 174
Score = 31.1 bits (71), Expect = 0.62
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 35 VQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDF 89
V +HY E E+ +D T P F +G+ LIP E A+L + GE+
Sbjct: 9 VSLHYTLKVEDGEV-VDTTDENYG-PLTFIVGAGQLIPGLEEALLGKEVGEEFTV 61
>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat.
Length = 78
Score = 29.3 bits (66), Expect = 0.63
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 201 EYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVW---GKALIGLQE 257
L NL + Y + KAL+ A + + + L +
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 258 WTSAIKHLKTARKLA 272
+ A+++L+ A L
Sbjct: 62 YDEALEYLEKALALR 76
>gnl|CDD|144046 pfam00308, Bac_DnaA, Bacterial dnaA protein.
Length = 219
Score = 31.1 bits (71), Expect = 0.65
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 164 NAFNDKNIVSAVRRYRDAVKLLI-NTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKL 222
+A D I + + YR+ LLI + Q +++ Q E + L + NNKQ L
Sbjct: 81 DALRDNKIEAFKKSYRNVDLLLIDDIQFLAGKEKTQ--EEFFHTFNAL---HENNKQIVL 135
Query: 223 TCDCASKAL 231
T D K L
Sbjct: 136 TSDRPPKEL 144
>gnl|CDD|232831 TIGR00115, tig, trigger factor. Trigger factor is a
ribosome-associated molecular chaperone and is the first
chaperone to interact with nascent polypeptide. Trigger
factor can bind at the same time as the signal
recognition particle (SRP), but is excluded by the SRP
receptor (FtsY). The central domain of trigger factor
has peptidyl-prolyl cis/trans isomerase activity. This
protein is found in a single copy in virtually every
bacterial genome [Protein fate, Protein folding and
stabilization].
Length = 408
Score = 31.4 bits (72), Expect = 0.72
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 63 FQLGSSGLIPAFEYAILSMQKGEKSDF 89
+LGS IP FE ++ M+ GE+ +
Sbjct: 176 LELGSGQFIPGFEEQLVGMKAGEEKEI 202
>gnl|CDD|234956 PRK01490, tig, trigger factor; Provisional.
Length = 435
Score = 30.9 bits (71), Expect = 1.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 62 RFQLGSSGLIPAFEYAILSMQKGEKSDF 89
+LGS IP FE ++ M+ GE+
Sbjct: 186 SLELGSGRFIPGFEEQLVGMKAGEEKTI 213
>gnl|CDD|237908 PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans
isomerase; Provisional.
Length = 156
Score = 28.5 bits (64), Expect = 3.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 60 PERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFG 98
P F+LG L E +L ++ G+K F E FG
Sbjct: 34 PALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFG 72
>gnl|CDD|223618 COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans isomerase
(trigger factor) [Posttranslational modification,
protein turnover, chaperones].
Length = 441
Score = 29.6 bits (67), Expect = 3.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 63 FQLGSSGLIPAFEYAILSMQKGEKSDF 89
+LGS IP FE ++ M+ GE+ D
Sbjct: 187 LELGSGRFIPGFEDQLVGMKAGEEKDI 213
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 28.3 bits (63), Expect = 3.5
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 303 CMKMFSSSSSPSQHSNVVRIAYQEHEQVRPATLQEIQDTE 342
C+ FSSS S QH I Y EH +V P +E ++T+
Sbjct: 79 CLMPFSSSVSLKQH-----IRYTEHSKVCPVCGKEFRNTD 113
>gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain,
uncharacterized subfamily 3. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 307
Score = 28.7 bits (65), Expect = 4.2
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 13/41 (31%)
Query: 91 ASYELCFGALGCPPRIPAKADLL--FE------VHLINFSI 123
A Y++C+ GC +D+L + V +I++SI
Sbjct: 146 AVYKVCWPDGGCFG-----SDILAAIDQAIADGVDVISYSI 181
>gnl|CDD|225613 COG3071, HemY, Uncharacterized enzyme of heme biosynthesis
[Coenzyme metabolism].
Length = 400
Score = 28.1 bits (63), Expect = 8.1
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 229 KALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKA 288
KA + +D L G+ + + W A + L+ A KL S AE+ + +
Sbjct: 315 KAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQ- 373
Query: 289 DLGNQQYQKETKARCMKMFSSSSSPSQ 315
LG + ++ + + + + PS
Sbjct: 374 -LGEPEEAEQVRREALLLTRQPNLPSV 399
>gnl|CDD|235597 PRK05765, PRK05765, precorrin-3B C17-methyltransferase;
Provisional.
Length = 246
Score = 27.8 bits (62), Expect = 9.1
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 17/76 (22%)
Query: 265 LKTARKLAAKDSVRA---EIDKEILKADLGNQQYQKETKARCMKMFSSSSSPSQHSNVVR 321
L K A D V I++ +L M + S P+ +V+
Sbjct: 145 LHRVTKAAEADFVIVFYNPINENLLI--------------EVMDIVSKHRKPNTPVGLVK 190
Query: 322 IAYQEHEQVRPATLQE 337
AY+ +E V TL
Sbjct: 191 SAYRNNENVVITTLSS 206
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.379
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,624,072
Number of extensions: 1762530
Number of successful extensions: 1523
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1519
Number of HSP's successfully gapped: 29
Length of query: 372
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 274
Effective length of database: 6,590,910
Effective search space: 1805909340
Effective search space used: 1805909340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)