RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8368
(372 letters)
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 152 bits (385), Expect = 2e-43
Identities = 59/311 (18%), Positives = 114/311 (36%), Gaps = 26/311 (8%)
Query: 10 QIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSG 69
++ D K+ K+I ++G G P + +HY + + ++ + T+ + P LG
Sbjct: 45 EVLDEKVSKQIIKEGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQ-PIELVLGKEK 103
Query: 70 -LIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPR--IPAKADLLFEVHLINFSIDPQ 126
+ + SM+ GE++ +EL +G G +P ADLL+EV +I F +
Sbjct: 104 KELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKE 163
Query: 127 VVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLI 186
+ + + A G + F ++ + A+++Y A+ +
Sbjct: 164 -------------GKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG 210
Query: 187 NTQVTNY--EDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKL 244
+ + + Q + N+ C K+Y + L K+ K
Sbjct: 211 DDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE----KNPKA 266
Query: 245 FFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCM 304
F GKA L + SA + A+K A D I +E+ + ++ K
Sbjct: 267 LFRRGKAKAELGQMDSARDDFRKAQKYAPDD---KAIRRELRALAEQEKALYQKQKEMYK 323
Query: 305 KMFSSSSSPSQ 315
+F
Sbjct: 324 GIFKGKDEGGA 334
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 146 bits (369), Expect = 5e-41
Identities = 65/354 (18%), Positives = 131/354 (37%), Gaps = 39/354 (11%)
Query: 4 VPYGKEQIQDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPER 62
VP G +DG ++++I+ +G G P GA V+V Y + + D R
Sbjct: 15 VPRGSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYK--DKLFD------QRELR 66
Query: 63 FQLG---SSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHL 118
F++G + L E AI M+KGE S + FG++G +IP A+L +E+HL
Sbjct: 67 FEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHL 126
Query: 119 INFSIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRY 178
+F + E + L+++ + G F + A+ +Y
Sbjct: 127 KSFEKAKES----------------WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQY 170
Query: 179 RDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFA 238
+ V L + E+ + + + NL +C+ + + + +KAL+ S
Sbjct: 171 KKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS--- 227
Query: 239 TKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKE 298
+ K G+A + + ++ A + +L + ++ ++
Sbjct: 228 -NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN---KAAKTQLAVCQQRIRRQLAR 283
Query: 299 TKARCMKMFSSSSSPSQHSNVVRIAYQEHEQVRPATLQEIQDTEESNESDGYDV 352
K MF ++ N + + ++E Q + + +
Sbjct: 284 EKKLYANMFERL---AEEENKAKAEASSGDHPTDTEMKEEQKSNTAGSQSQVET 334
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 135 bits (340), Expect = 6e-36
Identities = 55/353 (15%), Positives = 113/353 (32%), Gaps = 35/353 (9%)
Query: 1 MVPVPYGKEQIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIP 60
++ G + + ++ NP GA V++H
Sbjct: 134 LLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGRMFD--------CRD 185
Query: 61 ERFQLG---SSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPP-RIPAKADLLFEV 116
F +G + + A+ MQ+ E+ + FG G P I A+L++EV
Sbjct: 186 VAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEV 245
Query: 117 HLINFSIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVR 176
L +F + + + E+ G F + AV
Sbjct: 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEK----------------GTVYFKGGKYMQAVI 289
Query: 177 RYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH 236
+Y V L + ++ E +L + NL +CY ++Y +C KAL S
Sbjct: 290 QYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS- 348
Query: 237 FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQ 296
+ K + G+A + + E+ SA + ++ ++ +I +++
Sbjct: 349 ---ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN---KAARLQISMCQKKAKEHN 402
Query: 297 KETKARCMKMFSSSSSPSQHSNVVRIAYQEHEQVRPATLQEIQDTEESNESDG 349
+ + MF + + ++ + E + +G
Sbjct: 403 ERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQAMEEEKPEG 455
Score = 88.6 bits (219), Expect = 2e-19
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 3/135 (2%)
Query: 13 DGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLI 71
D ++K +K G G E P++G V VHY N D ++ R P F LG +I
Sbjct: 30 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLS-NGKKFDSSHDRNE-PFVFSLGKGQVI 87
Query: 72 PAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSS 131
A++ + +M++GE E +G+ G P+IP+ A L FE+ L++F +
Sbjct: 88 KAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGEDLFEDGG 147
Query: 132 ADIESDFIDSQVEEP 146
+ P
Sbjct: 148 IIRRTKRKGEGYSNP 162
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat,
williams-beuren syndrome, structural genomics
consortium, SGC; 2.10A {Homo sapiens}
Length = 134
Score = 97.7 bits (244), Expect = 4e-25
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 12 QDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLI 71
D ++K + +G G+ A V V Y Y E + P D Y RK+ P +LG +
Sbjct: 24 GDRGVLKDVIREGAGDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKT-PRLMKLGEDITL 82
Query: 72 PAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
E +LSM++GE + F +G LGCPP IP +LFE+ L++F
Sbjct: 83 WGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDF 132
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor,
SHH signalling antagonist, structural genomics
consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Length = 118
Score = 86.5 bits (215), Expect = 4e-21
Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 8/113 (7%)
Query: 12 QDGKLMKKIKEKGFGEN--PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSG 69
+G L KK G + PV G V VH E + T +++ F LG
Sbjct: 11 GNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLE------NGTRVQEEPELVFTLGDCD 64
Query: 70 LIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS 122
+I A + ++ M GE + A + C+G G P IP A L EV L
Sbjct: 65 VIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A
{Arabidopsis thaliana}
Length = 180
Score = 88.4 bits (219), Expect = 4e-21
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 10 QIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSG 69
++ D K+ K+I ++G G P + +HY + + ++ + T+ + P LG
Sbjct: 45 EVLDEKVSKQIIKEGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQ-PIELVLGKEK 103
Query: 70 -LIPAFEYAILSMQKGEKSDFFASYELCFGALG--CPPRIPAKADLLFEVHLINF 121
+ + SM+ GE++ +EL +G G P +P ADLL+EV +I F
Sbjct: 104 KELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGF 158
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 135
Score = 84.7 bits (210), Expect = 3e-20
Identities = 36/129 (27%), Positives = 50/129 (38%), Gaps = 16/129 (12%)
Query: 12 QDGKLMKKIKEKGFGEN--PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSG 69
+G L KK G + PV G V VH E + T +++ F LG
Sbjct: 15 GNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLE------NGTRVQEEPELVFTLGDCD 68
Query: 70 LIPAFEYAILSMQKGEKSDFFASYELCFGALGC-PPRIPAKADLLFEVHLINFSIDPQVV 128
+I A + ++ M GE + A + C+G G P IP A L EV L P
Sbjct: 69 VIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRP--- 125
Query: 129 RSSADIESD 137
D+E
Sbjct: 126 ----DLEMS 130
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel,
central helix, with flexible N-terminal extension,
isomerase; NMR {Homo sapiens}
Length = 157
Score = 81.4 bits (201), Expect = 1e-18
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 9/118 (7%)
Query: 7 GKEQIQDGKLMKKIKEKGFGEN--PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQ 64
+ + +G L KK G + PV G V VH E + T +++ F
Sbjct: 36 WLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLE------NGTRVQEEPELVFT 89
Query: 65 LGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGC-PPRIPAKADLLFEVHLINF 121
LG +I A + ++ M GE + A + C+G G P IP A L EV L
Sbjct: 90 LGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTA 147
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain
five-stranded anti-parallel beta-sheet alpha-helix
crossing THis sheet; 2.08A {Triticum aestivum} PDB:
3jym_A
Length = 356
Score = 84.5 bits (209), Expect = 2e-18
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 3/120 (2%)
Query: 8 KEQIQDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLG 66
+ +I L KK+ ++G G + P +G V+VHY + D + R +F+LG
Sbjct: 5 ENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLL-DGKKFDSSRDRDD-TFKFKLG 62
Query: 67 SSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQ 126
+I ++ I +M+KGE + F EL +G G PP IPA A L F+V L++++
Sbjct: 63 QGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRD 122
Score = 77.6 bits (191), Expect = 4e-16
Identities = 34/148 (22%), Positives = 55/148 (37%), Gaps = 11/148 (7%)
Query: 5 PYGKEQIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQ 64
G K +KE ENP V V Y E D T + KS F
Sbjct: 119 SVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLE------DGTVVSKSEGVEFT 172
Query: 65 LGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPR-----IPAKADLLFEVHLI 119
+ L PA A+ +M+KGEK + FG +G P +P A L+ ++ L+
Sbjct: 173 VKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELV 232
Query: 120 NFSIDPQVVRSSADIESDFIDSQVEEPA 147
++ ++ ++ + + E
Sbjct: 233 SWKTVTEIGDDKKILKKVLKEXEGYERP 260
Score = 76.4 bits (188), Expect = 1e-15
Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 4/124 (3%)
Query: 1 MVPVPYGKEQIQDGKLMKKIKEK-GFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSI 59
+V E D K++KK+ ++ E P GA V V + + + + +
Sbjct: 231 LVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQE- 289
Query: 60 PERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPR--IPAKADLLFEVH 117
P F+ +I + A+L+M+KGE + E +G+ +P + +++EV
Sbjct: 290 PFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVE 349
Query: 118 LINF 121
L++F
Sbjct: 350 LVSF 353
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5;
2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A*
3ni6_A 3pa7_A
Length = 129
Score = 78.5 bits (194), Expect = 6e-18
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 7 GKEQIQDGKLMKKIKEKGFGEN---PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERF 63
E DG ++K I +KG P G V VHY+ E+ D ++ R P +F
Sbjct: 9 KVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNV-PFKF 67
Query: 64 QLGSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
L +I ++ + SM+K EK +G GC IP + LLFE+ L++F
Sbjct: 68 HLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125
>1r9h_A FKB-6, FK506 binding protein family; structural genomics,
peptidylprolyl isomerase, PSI, protein structure
initiative; 1.80A {Caenorhabditis elegans} SCOP:
d.26.1.1
Length = 135
Score = 78.5 bits (194), Expect = 7e-18
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 12 QDGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
+DG ++K IK++G G P G V+VHY+ E N D + R F LG +
Sbjct: 12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLE-NGTKFDSSRDRGD-QFSFNLGRGNV 69
Query: 71 IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS 122
I ++ + +M KGE ++F + +G G PP+IP A L+FEV L +S
Sbjct: 70 IKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWS 121
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein,
phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP:
d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Length = 280
Score = 79.1 bits (195), Expect = 5e-17
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 3/129 (2%)
Query: 12 QDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
QD ++K IK +G G E P++G V VHY + + D + RK F LG +
Sbjct: 49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLL-DGTKFDSSLDRKD-KFSFDLGKGEV 106
Query: 71 IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRS 130
I A++ AI +M+ GE E +G+ G PP+IP A L+FEV L F +
Sbjct: 107 IKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEE 166
Query: 131 SADIESDFI 139
I
Sbjct: 167 DGGIIRRIQ 175
Score = 69.9 bits (171), Expect = 1e-13
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 12/121 (9%)
Query: 5 PYGKEQIQDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQ 64
E+ G + + P GA V+V Y + RF+
Sbjct: 160 EDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFD--------QRELRFE 211
Query: 65 LG---SSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPP-RIPAKADLLFEVHLIN 120
+G + L E AI M+KGE S + FG++G +IP A+L +E+HL +
Sbjct: 212 IGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKS 271
Query: 121 F 121
F
Sbjct: 272 F 272
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 77.1 bits (190), Expect = 7e-17
Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 8/167 (4%)
Query: 150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQM-QLEEYLCRVYR 208
+ ++ A ++ G F I A+ +Y++A+ I+T+ + + + + +
Sbjct: 33 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92
Query: 209 NLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTA 268
NL CYN NK Y D ASK L+ +VK + G A + A ++L A
Sbjct: 93 NLATCYNKNKDYPKAIDHASKVLKIDK----NNVKALYKLGVANMYFGFLEEAKENLYKA 148
Query: 269 RKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSSPSQ 315
L + +I ++ +K+ K MF +
Sbjct: 149 ASLNPNN---LDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYEE 192
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A
3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Length = 128
Score = 73.8 bits (182), Expect = 2e-16
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 12 QDGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGL 70
+D ++K +K G GE P++G V VHY N D ++ R P F LG +
Sbjct: 17 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLS-NGKKFDSSHDRNE-PFVFSLGKGQV 74
Query: 71 IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
I A++ + +M+KGE E +G+ G P+IP+ A L FE+ L++F
Sbjct: 75 IKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 78.6 bits (194), Expect = 2e-16
Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 9/180 (5%)
Query: 131 SADIESDFI-DSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLL-INT 188
S D DF D+ V+ K+L +++L G F +N A+++Y ++ + +
Sbjct: 198 SGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR 257
Query: 189 QVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVW 248
D +L+ N+ C ++ D +AL+ + K +
Sbjct: 258 AAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP----SNTKALYRR 313
Query: 249 GKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFS 308
+ GL+E+ A+ LK A+++A +D I E+LK + + + KA KMF+
Sbjct: 314 AQGWQGLKEYDQALADLKKAQEIAPED---KAIQAELLKVKQKIKAQKDKEKAAYAKMFA 370
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae}
SCOP: d.26.1.1
Length = 113
Score = 73.0 bits (180), Expect = 3e-16
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Query: 10 QIQDGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSS 68
++ +G + G G P G V +HY E N D + R S P + +G
Sbjct: 2 EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLE-NGQKFDSSVDRGS-PFQCNIGVG 59
Query: 69 GLIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFS 122
+I ++ I + GEK+ +G G P IP + L+F+V L+ +
Sbjct: 60 QVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKVN 113
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase,
polymorphism, rotamase, structural genomics, structural
genomics consortium, SGC; 1.80A {Homo sapiens}
Length = 102
Score = 71.8 bits (177), Expect = 6e-16
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 24 GFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQK 83
G G + +HY E + D + + P F LG+ +I ++ +L M +
Sbjct: 1 GSPIKSRKGDVLHMHYTGKLE-DGTEFDSSLPQNQ-PFVFSLGTGQVIKGWDQGLLGMCE 58
Query: 84 GEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQV 127
GEK EL +G G PP+IP A L+FEV L+ ++
Sbjct: 59 GEKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKIERRTEL 102
>2ppn_A FK506-binding protein 1A; high resolution protein structure,
isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB:
1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A*
1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A*
1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Length = 107
Score = 71.4 bits (176), Expect = 8e-16
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Query: 16 LMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAF 74
+ + G G P G VHY E + D + R P +F LG +I +
Sbjct: 2 VQVETISPGDGRTFPKRGQTCVVHYTGMLE-DGKKFDSSRDRNK-PFKFMLGKQEVIRGW 59
Query: 75 EYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
E + M G+++ S + +GA G P IP A L+F+V L+
Sbjct: 60 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
1.60A {Homo sapiens} PDB: 3o5f_A
Length = 144
Score = 72.4 bits (178), Expect = 1e-15
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 13 DGKLMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLI 71
D ++K +K G GE P++G V VHY N D ++ R P F LG +I
Sbjct: 34 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLS-NGKKFDSSHDRNE-PFVFSLGKGQVI 91
Query: 72 PAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINF 121
A++ + +M+KGE E +G+ G P+IP+ A L FE+ L++F
Sbjct: 92 KAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus,
phosphoprotein, R isomerase-inhibitor complex; HET: RAP;
1.95A {Mus musculus} PDB: 1pbk_A*
Length = 119
Score = 70.4 bits (173), Expect = 3e-15
Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 9/117 (7%)
Query: 13 DGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAE------ANELPIDITYLRKSIPERFQL 65
K K I +KG P G V Y N P F++
Sbjct: 3 PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAK-PLSFKV 61
Query: 66 GSSGLIPAFEYAILSMQKGEKSDFFASYELCFGALGCP-PRIPAKADLLFEVHLINF 121
G +I ++ A+L+M KGEK+ E +G G P +IP L+FEV L++
Sbjct: 62 GVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 70.9 bits (174), Expect = 6e-15
Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 9/159 (5%)
Query: 152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLL---INTQVTNYEDQMQLEEYLCRVYR 208
LK + L G F K+ A+ YRDA+ L I + + ++L+ +Y
Sbjct: 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYA 67
Query: 209 NLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTA 268
N+ CY N + +S+ L+ + K F KA I + A + LK
Sbjct: 68 NMSQCYLNIGDLHEAEETSSEVLKREE----TNEKALFRRAKARIAAWKLDEAEEDLKLL 123
Query: 269 RKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMF 307
+ + + +E+ + + +++ KMF
Sbjct: 124 LRNHPAA--ASVVAREMKIVTERRAEKKADSRVTYSKMF 160
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura
genomics, seattle structural genomics center for
infectious; NMR {Giardia lamblia}
Length = 130
Score = 68.4 bits (168), Expect = 2e-14
Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 13 DGKLMKKIKEKGFG-ENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLI 71
+L KK+ G G P G V VHY + D + R P +F LG+ +I
Sbjct: 23 SAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFP-DGKQFDSSRSRGK-PFQFTLGAGEVI 80
Query: 72 PAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLIN 120
++ + +M GEK+ F Y+L +G G PP IP KA L+FEV L+
Sbjct: 81 KGWDQGVATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 67.5 bits (165), Expect = 2e-13
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Query: 13 DGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIP 72
+ L + +G G G V VHY + + D + R P F LG +I
Sbjct: 103 ESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT-DGQKFDSSKDRND-PFAFVLGGGMVIK 160
Query: 73 AFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLIN 120
++ + M+ G +L +GA G IP A L+FEV L++
Sbjct: 161 GWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELLD 208
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET:
SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A
2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Length = 133
Score = 65.7 bits (161), Expect = 2e-13
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 10/109 (9%)
Query: 16 LMKKIKEKGFGENPVLGAHVQVHYMYYAEANELP----IDITYLRKSIPERFQLGSSGLI 71
L + +G G G V VHY L D + R P F LG +I
Sbjct: 30 LKYEDLTEGSGAEARAGQTVSVHY-----TGWLTDGQKFDSSKDRND-PFAFVLGGGMVI 83
Query: 72 PAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLIN 120
++ + M+ G +L +GA G IP A L+FEV L++
Sbjct: 84 KGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 132
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics,
structural genomics consortium, SGC, PE prolyl CIS-trans
isomerase; 1.82A {Homo sapiens}
Length = 125
Score = 65.0 bits (159), Expect = 3e-13
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 4/116 (3%)
Query: 13 DGKLMKKIKEKGF--GENPVLGAHVQVHYMYYAEANELPIDITYLRKSI-PERFQLGSSG 69
+ ++ ++ +K F G + VHY Y E + T+ + P F LG
Sbjct: 11 EPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILE 70
Query: 70 LIPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDP 125
+ ++ + M GEK L +G G IP ++ L+F + L+ P
Sbjct: 71 ALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGKGK-IPPESTLIFNIDLLEIRNGP 125
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain,
long alpha helix, dimerisation VIA helical INTE
isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1
PDB: 2uz5_A 2vcd_A*
Length = 213
Score = 60.5 bits (147), Expect = 5e-11
Identities = 26/105 (24%), Positives = 37/105 (35%), Gaps = 12/105 (11%)
Query: 19 KIKEKGFGENPVLGAHVQVHYMYYAEANELP----IDITYLRKSIPERFQLGSSGLIPAF 74
K+ G G P V V Y L D T P FQ+ +IP +
Sbjct: 111 KVINSGNGVKPGKSDTVTVEY-----TGRLIDGTVFDSTEKTGK-PATFQVS--QVIPGW 162
Query: 75 EYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLI 119
A+ M G + + L +G I L+F++HLI
Sbjct: 163 TEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLI 207
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506
binding protein; 1.85A {Arabidopsis thaliana} SCOP:
d.26.1.1 PDB: 1y0o_A
Length = 129
Score = 57.8 bits (140), Expect = 1e-10
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Query: 16 LMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFE 75
L K G+G V G ++ HY+ E ++ D +Y R P F++G +I ++
Sbjct: 14 LAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKV-FDSSYNRGK-PLTFRIGVGEVIKGWD 71
Query: 76 YAIL------SMQKGEKSDFFASYELCFGALG-----CPPRIPAKADLLFEVHLINFS 122
IL M G K EL +G G IP + LLF++ I +
Sbjct: 72 QGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGKA 129
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase,
isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Length = 167
Score = 57.8 bits (140), Expect = 2e-10
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 13/110 (11%)
Query: 16 LMKKIKEKGFGEN-PVLGAHVQVHYMYYAEANELP----IDITYLRKSIPERFQLGSSGL 70
L+ + +G G+ P + +VHY L D + R P F+ +
Sbjct: 39 LVFQRIARGSGKRAPAIDDKCEVHY-----TGRLRDGTVFDSSRERGK-PTTFRPN--EV 90
Query: 71 IPAFEYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLIN 120
I + A+ M++G++ F Y+L +G G IP + L F+V LI+
Sbjct: 91 IKGWTEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELIS 140
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone,
peptidyl-prolyl isomerase, heat shock protein, FK
family; HET: MSE; 1.97A {Escherichia coli} SCOP:
d.26.1.1 PDB: 1q6i_A* 1q6u_A
Length = 224
Score = 57.1 bits (138), Expect = 1e-09
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
Query: 19 KIKEKGFGENPVLGAHVQVHYMYYAEANELP----IDITYLRKSIPERFQLGSSGLIPAF 74
++ E G GE P V V+Y L D +Y R P F+L G+IP +
Sbjct: 126 QVVEAGKGEAPKDSDTVVVNY-----KGTLIDGKEFDNSYTRGE-PLSFRLD--GVIPGW 177
Query: 75 EYAILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLI 119
+ +++KG K EL +G G P IP + L+F+V L+
Sbjct: 178 TEGLKNIKKGGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELL 221
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR
SRT; 1.60A {Pseudomonas syringae PV}
Length = 219
Score = 56.7 bits (137), Expect = 1e-09
Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 9/102 (8%)
Query: 19 KIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSI-PERFQLGSSGLIPAFEYA 77
G G P V+V Y L D +S P+ F+L +I + A
Sbjct: 122 TELTPGTGPKPDANGRVEVRY-----VGRL-PDGKIFDQSTQPQWFRLD--SVISGWTSA 173
Query: 78 ILSMQKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLI 119
+ +M G K + +GA G I L+FE+ LI
Sbjct: 174 LQNMPTGAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELI 215
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 49.9 bits (119), Expect = 4e-07
Identities = 37/218 (16%), Positives = 67/218 (30%), Gaps = 22/218 (10%)
Query: 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMV 212
AQEL G F + A Y A+ N V Y Y N +
Sbjct: 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVY-------------YTNRAL 46
Query: 213 CYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA 272
CY +Q + +AL+ VK F G+ + ++ + AI +L+ A LA
Sbjct: 47 CYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102
Query: 273 AKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSSPSQHSNVVRIAYQEHEQVRP 332
+ + D +++ + R + S S + ++ + +
Sbjct: 103 KEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQE---SELHSYLTRLIAAERERELEECQ 159
Query: 333 ATLQEIQDTEESNESDGYDVGDFEKLMEIRMSEFRMAE 370
+ +D +K M F +
Sbjct: 160 RNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 46.5 bits (111), Expect = 1e-06
Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 23/152 (15%)
Query: 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMV 212
AQEL G F + Y +A Y + + Y N +
Sbjct: 7 PSAQELKEQGNRLFVGRK-------YPEAAAC--------YGRAITRNPLVAVYYTNRAL 51
Query: 213 CYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA 272
CY +Q + +AL+ VK F G+ + ++ + AI +L+ A LA
Sbjct: 52 CYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107
Query: 273 --AKDSVRAEIDKEILKADLGNQQYQKETKAR 302
+ + +I + A +++ + R
Sbjct: 108 KEQRLNFGDDIPSALRIAK--KKRWNSIEERR 137
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 3e-06
Identities = 68/493 (13%), Positives = 127/493 (25%), Gaps = 183/493 (37%)
Query: 3 PVPYGKEQIQDGKLMKKIKE----------------KGFGENPVLGAHV----------- 35
+ K + + K+++ G G+ + V
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-WVALDVCLSYKVQCKMD 181
Query: 36 -QVHYM---YYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFA 91
++ ++ + + L I + S + I S+ + E
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-IKLRIHSI-QAELRRLLK 239
Query: 92 S--YELC---------------FGALGCP----PRIPAKADLLFEVHLINFSIDPQVVRS 130
S YE C F L C R D L + S+D
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAATTTHISLD------ 292
Query: 131 SADIESDFIDSQVEEPAFAKVLK-RAQEL---------------GASGKNAFN------- 167
+V+ K L R Q+L S ++
Sbjct: 293 --HHSMTLTPDEVKS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 168 ---DK--NIVSA---------VRRY-------RDAVKLLINTQV-------TNYEDQMQL 199
DK I+ + R+ + I T + D M +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--IPTILLSLIWFDVIKSDVMVV 407
Query: 200 --------------EEYLCRVY-----------------RNLMVCYNNNKQYKLTCDCAS 228
+E + R+++ YN K + D
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD-DLIP 466
Query: 229 KALQ--FASHFA--------TKDVKLF------FVWGKALIGLQEWTSAIKHLKTARKLA 272
L F SH + + LF F + L+ I+H TA
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF------LE---QKIRHDSTA--WN 515
Query: 273 AKDSVRAEI-DKEILKADLGNQQYQKETKARCMKMFSSSSSP----SQHSNVVRIAYQ-E 326
A S+ + + K + + + E + F S++++++RIA E
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575
Query: 327 HEQVRPATLQEIQ 339
E + +++Q
Sbjct: 576 DEAIFEEAHKQVQ 588
Score = 38.7 bits (89), Expect = 0.004
Identities = 52/410 (12%), Positives = 105/410 (25%), Gaps = 114/410 (27%)
Query: 34 HVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFE-----YAILSMQKGEKSD 88
H H+M + E E Y K I F+ AF + M K
Sbjct: 1 HHHHHHMDF-ETGE--HQYQY--KDILSVFE-------DAFVDNFDCKDVQDMPKS---- 44
Query: 89 FFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSADIESDFIDSQVEEPAF 148
+ E + + + LF ++ ++ F++ V +
Sbjct: 45 ILSKEE-IDHIIMSKDAV-SGTLRLFWT----------LLSKQEEMVQKFVEE-VLRINY 91
Query: 149 AKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCR--- 205
++ + + + + + R + ++ V+ + ++L + L
Sbjct: 92 KFLMSPIKT--EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 206 --------------------VYRNLMV-CYNNNKQYKLT---CDCASKALQFASHFATKD 241
V + V C + K + L C+ L+
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE-------ML 202
Query: 242 VKLFFVWGKALIGLQEWTSAIKH----LKTA--RKLAAKDSVRAEI------DKEILKA- 288
KL + + +S IK ++ R L +K + + + A
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 289 -----------------DLGNQQYQKETKARCMKMFSSSSSPSQHSNVVRIAYQE--HE- 328
L + + S + Q+ E
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 329 -QVRPATLQEI--QDTEESNESDGYDVGDFEKLME-IRMS-------EFR 367
P L I + D + + +KL I S E+R
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein,
cobalt, copper, cytoplasm, metal- binding, nickel,
rotamase, zinc; NMR {Escherichia coli}
Length = 196
Score = 46.2 bits (110), Expect = 4e-06
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 11/96 (11%)
Query: 32 GAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFA 91
V + Y E L +D + + P + G LI E A+ + G+K D
Sbjct: 6 DLVVSLAYQVRTEDGVL-VDESPVSA--PLDYLHGHGSLISGLETALEGHEVGDKFDVAV 62
Query: 92 SYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQV 127
+G +L+ V F ++
Sbjct: 63 GANDAYG-----QYDE---NLVQRVPKDVFMGVDEL 90
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone,
rotamase; NMR {Escherichia coli}
Length = 171
Score = 43.8 bits (104), Expect = 2e-05
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 11/96 (11%)
Query: 32 GAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFA 91
V + Y E L +D + + P + G LI E A+ + G+K D
Sbjct: 6 DLVVSLAYQVRTEDGVL-VDESPVSA--PLDYLHGHGSLISGLETALEGHEVGDKFDVAV 62
Query: 92 SYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQV 127
+G +L+ V F ++
Sbjct: 63 GANDAYG-----QYDE---NLVQRVPKDVFMGVDEL 90
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein,
rotamase; NMR {Helicobacter pylori}
Length = 151
Score = 42.6 bits (101), Expect = 3e-05
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 35 VQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFASYE 94
+ Y + + + +D ++ P F +G++ +I E A+L Q GE + + E
Sbjct: 13 ALIEYEVREQGSSIVLDSNISKE--PLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPE 70
Query: 95 LCFG 98
+G
Sbjct: 71 EAYG 74
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain,
IF domain, chaperone, peptidyl-prolyl isomerase
isomerase; 1.35A {Escherichia coli}
Length = 169
Score = 41.9 bits (99), Expect = 8e-05
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 12 QDGKLMKKIKEKGFGENPVLGAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLI 71
+ + + ++ + V VH+ + + T P F+LG + L
Sbjct: 17 RGSHMSESVQS---------NSAVLVHFTLKLDDGTT-AESTRNNGK-PALFRLGDASLS 65
Query: 72 PAFEYAILSMQKGEKSDFFASYELCFG 98
E +L ++ G+K+ F + FG
Sbjct: 66 EGLEQHLLGLKVGDKTTFSLEPDAAFG 92
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 42.7 bits (101), Expect = 1e-04
Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 18/149 (12%)
Query: 150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRN 209
K +K+ +L S + D A +Y +K + + EY R
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-----------EPSIAEYTVRSKER 300
Query: 210 LMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTAR 269
+ C++ +++ S+ LQ +A + + + AI+ +TA+
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNV----NALKDRAEAYLIEEMYDEAIQDYETAQ 356
Query: 270 KLAAKDSVRAEIDKEILKADLGNQQYQKE 298
+ D +I + + KA +Q QK
Sbjct: 357 EHNEND---QQIREGLEKAQRLLKQSQKR 382
Score = 32.3 bits (74), Expect = 0.22
Identities = 21/161 (13%), Positives = 46/161 (28%), Gaps = 19/161 (11%)
Query: 148 FAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVY 207
+ + + ++ GK + A+ ++ AV NY Y
Sbjct: 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYI-----------AY 63
Query: 208 RNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKT 267
+ + K +K +Q F G L+ + A K
Sbjct: 64 YRRATVFLAMGKSKAALPDLTKVIQLKMDFT----AARLQRGHLLLKQGKLDEAEDDFKK 119
Query: 268 ARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFS 308
K ++ E +++K+D + + A ++
Sbjct: 120 VLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160
Score = 31.6 bits (72), Expect = 0.41
Identities = 18/128 (14%), Positives = 42/128 (32%), Gaps = 8/128 (6%)
Query: 174 AVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233
A ++ +K + ++ + R+ + + Y K L+
Sbjct: 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172
Query: 234 ASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDS----VRAEIDKEILKAD 289
A +L + + I E AI LK A KL ++ + + ++ +
Sbjct: 173 CVWDA----ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE 228
Query: 290 LGNQQYQK 297
L + ++
Sbjct: 229 LSLSEVRE 236
>1ix5_A FKBP; ppiase, isomerase; NMR
{Methanothermococcusthermolithotrophicus} SCOP:
d.26.1.1
Length = 151
Score = 40.0 bits (94), Expect = 2e-04
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 13/79 (16%)
Query: 32 GAHVQVHYMYYAEANELPIDITY------------LRKSIPERFQLGSSGLIPAFEYAIL 79
G ++V Y+ E+ ++ D + R+ P F +G LI FE A+L
Sbjct: 5 GVKIKVDYIGKLESGDV-FDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVL 63
Query: 80 SMQKGEKSDFFASYELCFG 98
M+ G++ E +G
Sbjct: 64 DMEVGDEKTVKIPAEKAYG 82
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 38.1 bits (89), Expect = 0.001
Identities = 30/145 (20%), Positives = 49/145 (33%), Gaps = 16/145 (11%)
Query: 144 EEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYL 203
E ++L G F + A+ Y A+ L D ++ +
Sbjct: 17 EPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGL----------DATPQDQAV 66
Query: 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIK 263
+RN C+ + Y ASKA++ DVK + +AL L A+
Sbjct: 67 L--HRNRAACHLKLEDYDKAETEASKAIEKDG----GDVKALYRRSQALEKLGRLDQAVL 120
Query: 264 HLKTARKLAAKDSVRAEIDKEILKA 288
L+ L K+ V E + I
Sbjct: 121 DLQRCVSLEPKNKVFQEALRNISGP 145
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 39.6 bits (93), Expect = 0.001
Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 18/148 (12%)
Query: 150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRN 209
K +K+ +L S + D A +Y +K + + EY R
Sbjct: 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-----------EPSVAEYTVRSKER 277
Query: 210 LMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTAR 269
+ C++ +++ S+ LQ +A + + + AI+ + A+
Sbjct: 278 ICHCFSKDEKPVEAIRICSEVLQMEPDNV----NALKDRAEAYLIEEMYDEAIQDYEAAQ 333
Query: 270 KLAAKDSVRAEIDKEILKADLGNQQYQK 297
+ D +I + + KA +Q QK
Sbjct: 334 EHNEND---QQIREGLEKAQRLLKQSQK 358
Score = 32.6 bits (75), Expect = 0.17
Identities = 21/154 (13%), Positives = 42/154 (27%), Gaps = 19/154 (12%)
Query: 155 AQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCY 214
++ GK + A+ ++ AV NY Y +
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYI-----------AYYRRATVF 47
Query: 215 NNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK 274
+ K +K + F G L+ + A K K
Sbjct: 48 LAMGKSKAALPDLTKVIALKMDFT----AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 103
Query: 275 DSVRAEIDKEILKADLGNQQYQKETKARCMKMFS 308
+ E + +++KAD + + A ++
Sbjct: 104 EQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137
Score = 32.6 bits (75), Expect = 0.19
Identities = 11/161 (6%), Positives = 43/161 (26%), Gaps = 16/161 (9%)
Query: 150 KVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQ--------VTNYEDQMQLEE 201
K+ + S + ++ + + ++ +T + +++
Sbjct: 92 DDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV 151
Query: 202 YLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSA 261
+ + C+ + + A + S + F+ L + +
Sbjct: 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT----EAFYKISTLYYQLGDHELS 207
Query: 262 IKHLKTARKLAAKDS----VRAEIDKEILKADLGNQQYQKE 298
+ ++ KL ++ K + + +
Sbjct: 208 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG 248
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 37.2 bits (87), Expect = 0.001
Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 19/120 (15%)
Query: 152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLM 211
+++ EL G A + NI A++ Y +A ++L+ + +Y N
Sbjct: 1 MEQVNELKEKGNKALSVGNIDDALQCYSEA---------------IKLDPHNHVLYSNRS 45
Query: 212 VCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKL 271
Y Y+ + K + + K + AL L + A + + K
Sbjct: 46 AAYAKKGDYQKAYEDGCKTVDLKPDW----GKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two
domain P rotamase; 2.41A {Thermus thermophilus} PDB:
3cgn_A 3luo_A*
Length = 158
Score = 38.0 bits (89), Expect = 0.001
Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 16/96 (16%)
Query: 32 GAHVQVHYMYYAEANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSMQKGEKSDFFA 91
V + Y E +D + G LIP E A+ ++GE
Sbjct: 6 DKVVTIRYTLQVEGEV--LD------QGELSYLHGHRNLIPGLEEALEGREEGEAFQAHV 57
Query: 92 SYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQV 127
E +G P P + + V L F D +V
Sbjct: 58 PAEKAYG-----PHDP---EGVQVVPLSAFPEDAEV 85
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein,
chaperone; 1.95A {Methanocaldococcus jannaschii} PDB:
3pra_A
Length = 157
Score = 37.0 bits (86), Expect = 0.003
Identities = 24/124 (19%), Positives = 37/124 (29%), Gaps = 18/124 (14%)
Query: 32 GAHVQVHYMYYA----------EANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSM 81
G V++ Y Y E + P G ++P + AIL M
Sbjct: 5 GKMVKISYDGYVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEM 64
Query: 82 QKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSADIESDFIDS 141
GE+ + E FG R P + + L F+ I D I
Sbjct: 65 DVGEEREVVLPPEKAFG-----KRDP---SKIKLIPLSEFTKRGIKPIKGLTITIDGIPG 116
Query: 142 QVEE 145
++
Sbjct: 117 KIVS 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 35.3 bits (82), Expect = 0.007
Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 19/119 (15%)
Query: 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMV 212
+ AQE G F + +A+R Y +AVK + E+ +Y N
Sbjct: 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-------DPEN--------AILYSNRAA 55
Query: 213 CYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKL 271
C +++ D ++ S F +K + L+ ++EW+ A + + A ++
Sbjct: 56 CLTKLMEFQRALDDCDTCIRLDSKF----IKGYIRKAACLVAMREWSKAQRAYEDALQV 110
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 35.3 bits (82), Expect = 0.008
Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 26/149 (17%)
Query: 154 RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVC 213
+A+E GK F + +AV+ Y + +K ED R Y N
Sbjct: 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-------APED--------ARGYSNRAAA 47
Query: 214 YNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAA 273
+ +KA++ +F V+ + A I ++E+ SA++ L AR A
Sbjct: 48 LAKLMSFPEAIADCNKAIEKDPNF----VRAYIRKATAQIAVKEYASALETLDAARTKDA 103
Query: 274 KDSVRAEIDKEILKADLGNQQYQKETKAR 302
+ + +EI +Q Y K ++ R
Sbjct: 104 EVN-NGSSAREI------DQLYYKASQQR 125
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.008
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 5/27 (18%)
Query: 261 AIKHLKTARKLAAKDS-----VRAEID 282
A+K L+ + KL A DS ++A ++
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATME 47
Score = 31.8 bits (71), Expect = 0.17
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 18/45 (40%)
Query: 293 QQYQK-ETKARCMKMFSSSSSPSQHSNVVRIAYQEHEQVRPATLQ 336
Q +K + +K+++ S+P+ +A + AT++
Sbjct: 20 QALKKLQAS---LKLYADDSAPA-------LAIK-------ATME 47
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 35.8 bits (83), Expect = 0.009
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 19/132 (14%)
Query: 144 EEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYL 203
+EP LKRA+EL + F K+ +A++ Y A++L + +
Sbjct: 2 DEPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI------------- 48
Query: 204 CRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIK 263
Y N + Y + Y A++A++ + +K ++ + + L ++ +A++
Sbjct: 49 --YYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRAALR 102
Query: 264 HLKTARKLAAKD 275
+T K+ D
Sbjct: 103 DYETVVKVKPHD 114
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A
{Methanocaldococcus jannaschii} PDB: 3prd_A
Length = 231
Score = 35.9 bits (83), Expect = 0.011
Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 18/124 (14%)
Query: 32 GAHVQVHYMYYA----------EANELPIDITYLRKSIPERFQLGSSGLIPAFEYAILSM 81
G V++ Y Y E + P G ++P + AIL M
Sbjct: 5 GKMVKISYDGYVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEM 64
Query: 82 QKGEKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSADIESDFIDS 141
GE+ + E FG + + L F+ I D I
Sbjct: 65 DVGEEREVVLPPEKAFG--------KRDPSKIKLIPLSEFTKRGIKPIKGLTITIDGIPG 116
Query: 142 QVEE 145
++
Sbjct: 117 KIVS 120
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 34.7 bits (80), Expect = 0.014
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 12/105 (11%)
Query: 177 RYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH 236
++ DA K+ ++ L+ Y R + L C + Y+ S
Sbjct: 33 KWDDAQKI--------FQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI- 83
Query: 237 FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEI 281
+ + F + + L + A +AR LAA +
Sbjct: 84 ---NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 32.3 bits (74), Expect = 0.060
Identities = 14/125 (11%), Positives = 31/125 (24%), Gaps = 17/125 (13%)
Query: 152 LKRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLM 211
+ + ++ G + F AV Y + Q Y N
Sbjct: 1 MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVG-------------YSNKA 45
Query: 212 VCYNNNKQYKLTCDCASKALQFASHF--ATKDVKLFFVWGKALIGLQEWTSAIKHLKTAR 269
+ +Y + L++ S KL + A + + +
Sbjct: 46 MALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105
Query: 270 KLAAK 274
+ +
Sbjct: 106 EGYDR 110
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 32.6 bits (75), Expect = 0.076
Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 19/137 (13%)
Query: 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMV 212
A + G F + A++ Y +A+K N +D ++Y N
Sbjct: 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-------NPKD--------AKLYSNRAA 58
Query: 213 CYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA 272
CY +++L + +Q F +K + AL ++++T A+ + A L
Sbjct: 59 CYTKLLEFQLALKDCEECIQLEPTF----IKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114
Query: 273 AKDSVRAEIDKEILKAD 289
+ A+ + + A
Sbjct: 115 SSCKEAADGYQRCMMAQ 131
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 33.2 bits (76), Expect = 0.087
Identities = 19/125 (15%), Positives = 43/125 (34%), Gaps = 5/125 (4%)
Query: 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKL-LINTQVTNYEDQMQLEEYLCRVYRNLM 211
+ E+ A AV +R + L + T++ + + + E ++ L
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61
Query: 212 VCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKL 271
+ Y N+ Y + LQ A +V + + + A++ + +L
Sbjct: 62 LAYKKNRNYDKAYLFYKELLQKAP----NNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117
Query: 272 AAKDS 276
A +
Sbjct: 118 EADNL 122
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 32.3 bits (74), Expect = 0.092
Identities = 19/134 (14%), Positives = 39/134 (29%), Gaps = 18/134 (13%)
Query: 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMV 212
K+A + G +A+ K+ +A++ Y A +L N
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTY---------------ITNQAA 46
Query: 213 CYNNNKQYKLTCDCASKALQFASHFATKD---VKLFFVWGKALIGLQEWTSAIKHLKTAR 269
Y Y + KA++ K + G + +++ AI +
Sbjct: 47 VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106
Query: 270 KLAAKDSVRAEIDK 283
V + +
Sbjct: 107 AEHRTPDVLKKCQQ 120
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 32.5 bits (74), Expect = 0.11
Identities = 14/113 (12%), Positives = 34/113 (30%), Gaps = 14/113 (12%)
Query: 177 RYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH 236
R +A + + Y L Y +Q+ A+ A
Sbjct: 51 RIEEAEVF--------FRFLCIYDFYNVDYIMGLAAIYQIKEQF----QQAADLYAVAFA 98
Query: 237 FATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSV--RAEIDKEILK 287
D F G+ + L+ A + + + + + + +A+ + ++
Sbjct: 99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAIQ 151
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 32.9 bits (76), Expect = 0.11
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKH 264
R Y N + +KA++ +F + + A I ++E+ SA++
Sbjct: 174 RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV----RAYIRKATAQIAVKEYASALET 229
Query: 265 LKTARKLAAKDSVRAEIDKEILKADLGNQQ 294
L AR A+ + +EI + Q
Sbjct: 230 LDAARTKDAEVN-NGSSAREIDQLYYKASQ 258
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 32.4 bits (73), Expect = 0.22
Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 5/109 (4%)
Query: 192 NYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD--VKLFFVWG 249
E EE+ +V N + +Y+ + +KA++ + + +L++ G
Sbjct: 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRG 243
Query: 250 KALIGLQEWTSAIK-HLKTARKLAAKDSVRAEIDKEILKADLGNQQYQK 297
+ L L+ + I+ K A D + KE L + ++
Sbjct: 244 ECLRKLEYEEAEIEDAYKKASFFF--DILEMHAYKEALVNKISRLEHHH 290
Score = 27.4 bits (60), Expect = 7.5
Identities = 14/101 (13%), Positives = 33/101 (32%), Gaps = 5/101 (4%)
Query: 177 RYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASH 236
Y + L ++ N + + + Y N K D + L+
Sbjct: 130 DYEYCILELK--KLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA 187
Query: 237 FATKD---VKLFFVWGKALIGLQEWTSAIKHLKTARKLAAK 274
+ VK+ + KAL + ++ + A +++ +
Sbjct: 188 LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 31.2 bits (71), Expect = 0.26
Identities = 16/161 (9%), Positives = 47/161 (29%), Gaps = 20/161 (12%)
Query: 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMV 212
+ +L + G A K A+ Y A+ + + N
Sbjct: 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPI---------------YLSNRAA 53
Query: 213 CYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA 272
Y+ + Q++ + A A + K + G A + ++ A + + +
Sbjct: 54 AYSASGQHEKAAEDAELATVVDPKY----SKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109
Query: 273 AKDSVRAEIDKEILKADLGNQQYQKETKARCMKMFSSSSSP 313
+ + + ++ + + + ++ +
Sbjct: 110 GNGG-SDAMKRGLETTKRKIEEANRGAEPPADDVDDAAGAS 149
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 32.0 bits (73), Expect = 0.36
Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 20/145 (13%)
Query: 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMV 212
K A L G F +K A++ Y A++L ED + Y NL
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALEL--------KEDPV--------FYSNLSA 47
Query: 213 CYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLA 272
CY + K + ++KAL+ ++ K+ A GL ++ A+ L
Sbjct: 48 CYVSVGDLKKVVEMSTKALELKPDYS----KVLLRRASANEGLGKFADAMFDLSVLSLNG 103
Query: 273 AKDSVRAEIDKEILKADLGNQQYQK 297
+ E E + ++
Sbjct: 104 DFNDASIEPMLERNLNKQAMSKLKE 128
Score = 27.8 bits (62), Expect = 7.2
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 207 YRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLK 266
Y L ++ S+A + ++ + + L ++ A+K
Sbjct: 341 YIQLACLAYRENKFDDCETLFSEAKRKFPEAP----EVPNFFAEILTDKNDFDKALKQYD 396
Query: 267 TARKLAAKDS 276
A +L K
Sbjct: 397 LAIELENKLD 406
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 31.7 bits (72), Expect = 0.37
Identities = 11/113 (9%), Positives = 35/113 (30%), Gaps = 1/113 (0%)
Query: 196 QMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD-VKLFFVWGKALIG 254
+Q + ++ N+ Y+ + ++ + KA + + K+ F L
Sbjct: 214 DIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK 273
Query: 255 LQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMF 307
+ A + ++ S + + + + + + + F
Sbjct: 274 AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326
Score = 27.5 bits (61), Expect = 8.5
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 207 YRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKL---FFVWGKALIGLQEWTSAIK 263
+ + Y + KQ ++ +AL + ++ FV + + A+
Sbjct: 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALP 203
Query: 264 HLKTARKLAAK 274
HL+ A +LA
Sbjct: 204 HLEAALELAMD 214
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 30.7 bits (69), Expect = 0.39
Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 20/137 (14%)
Query: 162 GKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYK 221
N + A ++ L+ Y R + L C QY
Sbjct: 28 AFNQYQSGXYEDAHXVFQALC---------------VLDHYDSRFFLGLGACRQAMGQYD 72
Query: 222 LTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKDSVRAEI 281
L S + + F + L+ E A L A++L A E+
Sbjct: 73 LAIHSYSYGAVMDI----XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128
Query: 282 DKEILKADLGNQQYQKE 298
+ + L + +KE
Sbjct: 129 -STRVSSMLEAIKLKKE 144
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 31.5 bits (72), Expect = 0.45
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 12/86 (13%)
Query: 85 EKSDFFASYELCFGALGCPPRIPAKADLLFEVHLINFSIDPQVVRSSADIESDFIDSQVE 144
EK S C L I +AD+ + I + + ++ + S+
Sbjct: 34 EKRPEIGSPVRCGEGL--SKGILNEADIKADRSFIANEVKGARIYGPSEKRPIILQSEKA 91
Query: 145 EPAFAKVLKR----------AQELGA 160
VL+R A + GA
Sbjct: 92 GNEVGYVLERDKFDKHLAALAAKAGA 117
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 29.9 bits (68), Expect = 1.1
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 206 VYRNLMVCYNNNKQYK---LTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAI 262
+Y VCY +Y + + + F +GK L+ + + AI
Sbjct: 39 IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKS----ADFEYYGKILMKKGQDSLAI 94
Query: 263 KHLKTARKL 271
+ + A
Sbjct: 95 QQYQAAVDR 103
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma
genitalium} SCOP: d.26.1.1
Length = 113
Score = 28.3 bits (64), Expect = 1.6
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 63 FQLGSSGLIPAFEYAILSMQKGEKSDF 89
+GS+ I FE +++M+ +K
Sbjct: 59 LTIGSNSFIKGFETGLIAMKVNQKKTL 85
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 28.7 bits (65), Expect = 1.6
Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 25/141 (17%)
Query: 153 KRAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMV 212
A+ L G +N +AV Y A++L N Y + N
Sbjct: 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVY-------------FCNRAA 54
Query: 213 CYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKHLKTARKL- 271
Y+ Y +A+ + K + G AL L + A+ + K A +L
Sbjct: 55 AYSKLGNYAGAVQDCERAICIDPAY----SKAYGRMGLALSSLNKHVEAVAYYKKALELD 110
Query: 272 ----AAKDSVRAEIDKEILKA 288
K + + ++ +A
Sbjct: 111 PDNETYKSN-LKIAELKLREA 130
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.40A {Vibrio
parahaemolyticus} SCOP: e.61.1.1
Length = 273
Score = 29.5 bits (66), Expect = 1.7
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 249 GKALIGLQEWTSAIKHLKTARKLAAKDSVRAEIDKEILKADL 290
+ L ++ A + L + KL + A + ++KA
Sbjct: 38 IELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ 79
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 29.8 bits (66), Expect = 1.9
Identities = 13/130 (10%), Positives = 35/130 (26%), Gaps = 7/130 (5%)
Query: 190 VTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWG 249
+ Y +Q+ + NL + ++ AL+ F +
Sbjct: 97 LQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFP----DAYCNLA 152
Query: 250 KALIGLQEWTSAIKHLKTARKL---AAKDSVRAEIDKEILKADLGNQQYQKETKARCMKM 306
L + +WT + +K + + + + + ++K R +
Sbjct: 153 HCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNL 212
Query: 307 FSSSSSPSQH 316
+
Sbjct: 213 CLDKINVLHK 222
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat
motif; 1.50A {Saccharomyces cerevisiae}
Length = 177
Score = 28.9 bits (64), Expect = 2.1
Identities = 13/86 (15%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 134 IESDFIDSQVEEPAFAKVLKRAQELGASGK--------NAFNDKNIVSAVRRYRDAVKLL 185
I + + P+ ++ K+A EL D++IV+ + + +
Sbjct: 20 ILEQAGEDKENLPSDVELYKKAAELDVLNDPKIGCVLAQCLFDEDIVNEIAEHNAFFTKI 79
Query: 186 INTQVTNYEDQMQLEEYLCRVYRNLM 211
+ T +E +L +++L+
Sbjct: 80 LVTPEYEKNFMGGIERFLGLEHKDLI 105
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 28.6 bits (64), Expect = 3.4
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKL---FFVWGKALIGLQEWTSA 261
+ + Y KQ + D A +A + +++L ++ + L+++ A
Sbjct: 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDA 203
Query: 262 IKHLKTARKLAAK 274
I H + A +A
Sbjct: 204 ISHFQKAYSMAEA 216
Score = 27.5 bits (61), Expect = 9.1
Identities = 13/110 (11%), Positives = 32/110 (29%), Gaps = 2/110 (1%)
Query: 200 EEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKD--VKLFFVWGKALIGLQE 257
+ + R N+ +C N+ QY+ +A+ + +F+ + L +
Sbjct: 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK 279
Query: 258 WTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKARCMKMF 307
A ++ + K + + L +E
Sbjct: 280 IDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL 329
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE; 2.55A
{Mesorhizobium loti}
Length = 301
Score = 28.1 bits (62), Expect = 4.0
Identities = 22/157 (14%), Positives = 43/157 (27%), Gaps = 10/157 (6%)
Query: 119 INFSIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRY 178
+ F +R ++I+ E A + A + G S + D V RY
Sbjct: 33 LVFRAGDLCLRIPGKGTEEYINRANE----AVAAREAAKAGVSPEVLHVDPATGVMVTRY 88
Query: 179 RDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFA 238
+ Q + E R + + + + + + +
Sbjct: 89 ------IAGAQTMSPEKFKTRPGSPARAGEAFRKLHGSGAVFPFRFELFAMIDDYLKVLS 142
Query: 239 TKDVKLFFVWGKALIGLQEWTSAIKHLKTARKLAAKD 275
TK+V L + + SA+ D
Sbjct: 143 TKNVTLPAGYHDVVREAGGVRSALAAHPLPLAACHCD 179
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 28.7 bits (64), Expect = 4.1
Identities = 9/68 (13%), Positives = 17/68 (25%), Gaps = 4/68 (5%)
Query: 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQEWTSAIKH 264
L +++ +A A + G AL + +A
Sbjct: 58 EAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHP----GIALWLGHALEDAGQAEAAAAA 113
Query: 265 LKTARKLA 272
A +L
Sbjct: 114 YTRAHQLL 121
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 28.5 bits (64), Expect = 4.2
Identities = 29/166 (17%), Positives = 50/166 (30%), Gaps = 27/166 (16%)
Query: 145 EPAFAKVLK--------RAQELGASGKNAFNDKNIVSAVRRYRDAVKLLINTQVTNYEDQ 196
EP A++ A +L G + F KN A++ Y+ A++L
Sbjct: 7 EPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL------------ 54
Query: 197 MQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVWGKALIGLQ 256
+ Y N+ CY + + + +KAL+ + K A L
Sbjct: 55 ---DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS----KALLRRASANESLG 107
Query: 257 EWTSAIKHLKTARKLAAKDSVRAEIDKEILKADLGNQQYQKETKAR 302
+T A+ L D E E + +
Sbjct: 108 NFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD 153
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase,
chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1
d.241.2.1 d.26.1.1 PDB: 1l1p_A
Length = 392
Score = 28.4 bits (64), Expect = 4.4
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 63 FQLGSSGLIPAFEYAILSMQKGEKSDF 89
++G+ +IP FE I+ KG +
Sbjct: 190 LEMGAGRMIPGFEDGIVGKTKGMEFVI 216
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 28.0 bits (63), Expect = 4.7
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 206 VYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVW-----GKALIGLQEWTS 260
V + V N ++K AL+ + + G L+++
Sbjct: 195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254
Query: 261 AIKHLKTARKLAAKDS 276
A+ + + A L +++
Sbjct: 255 ALDYHRQALVLIPQNA 270
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase;
2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3
PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Length = 549
Score = 28.2 bits (62), Expect = 5.7
Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 12/115 (10%)
Query: 124 DPQVVRSSADIES-----DFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAVRRY 178
+ +R S + + ++I S + L R EL + +K
Sbjct: 1 EAHQIRRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLEL 60
Query: 179 RDAVKLLINTQVTNYEDQMQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQF 233
+K L + Q +++E L +Y +NN + D AL F
Sbjct: 61 IHDLKYL----GLSDFFQDEIKEILGVIYNEHKCFHNNEVEKM---DLYFTALGF 108
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated
protein, nascent chain, cell division, isomerase; 2.7A
{Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1
PDB: 2vrh_A 1w2b_5
Length = 432
Score = 28.0 bits (63), Expect = 5.7
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 63 FQLGSSGLIPAFEYAILSMQKGEKSDF 89
+G +IP FE I + GE+
Sbjct: 187 LAMGQGRMIPGFEDGIKGHKAGEEFTI 213
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 27.4 bits (61), Expect = 6.4
Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 174 AVRRYRDAVKLLINTQVTNYEDQ-MQLEEYLCRVYRNLMVCYNNNKQYKLTCDCASKALQ 232
A++ ++A+ L Q+ +Y+ +Q + + C V N+ Y +++K + + A
Sbjct: 90 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural
genomics, midwest cente structural genomics; 2.15A
{Thiobacillus denitrificans}
Length = 444
Score = 28.0 bits (63), Expect = 6.4
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 138 FIDSQVEEP--AFAKVLKRAQELG 159
FI S++ + AF VLK AQ LG
Sbjct: 170 FILSEMRDKGAAFDDVLKEAQRLG 193
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 27.5 bits (62), Expect = 7.4
Identities = 10/54 (18%), Positives = 15/54 (27%), Gaps = 16/54 (29%)
Query: 122 SIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAV 175
S+DP R D D L ++ S + + I V
Sbjct: 235 SLDPNCPR-------DLTD------CL---LVEMEKEKHSAERLYTMDGITVTV 272
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A
{Thermus thermophilus}
Length = 332
Score = 27.1 bits (61), Expect = 9.2
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 138 FIDSQVEEPA-FAKVLKRAQELG 159
+I ++E+ +A+ L AQ LG
Sbjct: 155 YILQEMEKGRTYAEALLEAQRLG 177
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 27.5 bits (61), Expect = 9.4
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 3/75 (4%)
Query: 205 RVYRNLMVCYNNNKQYKLTCDCASKALQFASHFATKDVKLFFVW---GKALIGLQEWTSA 261
+ L V N + + AL + + W G A L+ + +A
Sbjct: 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535
Query: 262 IKHLKTARKLAAKDS 276
I L L+ D+
Sbjct: 536 IDALNQGLLLSTNDA 550
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 27.1 bits (61), Expect = 9.5
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 16/54 (29%)
Query: 122 SIDPQVVRSSADIESDFIDSQVEEPAFAKVLKRAQELGASGKNAFNDKNIVSAV 175
++DP R DFID +F L R QE + F KN+V
Sbjct: 236 TLDPNSPR-------DFID------SF---LIRMQEEEKNPNTEFYLKNLVMTT 273
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.379
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,565,206
Number of extensions: 323944
Number of successful extensions: 970
Number of sequences better than 10.0: 1
Number of HSP's gapped: 884
Number of HSP's successfully gapped: 119
Length of query: 372
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 277
Effective length of database: 4,049,298
Effective search space: 1121655546
Effective search space used: 1121655546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)