RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8369
(82 letters)
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open
conformation, transferase; HET: TPO; 2.80A
{Saccharomyces cerevisiae} SCOP: d.144.1.7
Length = 318
Score = 93.8 bits (234), Expect = 4e-25
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 14 LRNGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEV-HYDGDTRNFDEYPETDWKAAPSVG 72
L+NG +DVK H WFK V W+ + R + P P + GDT FD+YPE D
Sbjct: 249 LQNGTEDVKNHPWFKEVVWEKLLSRNIETPYEPPIQQGQGDTSQFDKYPEEDINYGVQGE 308
Query: 73 ETEQSLFDDF 82
+ LF DF
Sbjct: 309 DPYADLFRDF 318
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU;
CAMP-dependent protein kinase,catalytic mechanism, ATP
hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A
{Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E*
1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A*
1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A*
3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Length = 350
Score = 93.5 bits (233), Expect = 9e-25
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 14 LRNGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFDEYPETDWKAAPSVGE 73
L+NG +D+K H+WF DW +Y R+ + P +P+ GDT NFD+Y E + + + + E
Sbjct: 284 LKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSIN--E 341
Query: 74 TEQSLFDDF 82
F +F
Sbjct: 342 KCGKEFTEF 350
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase,
inhibitor, transf transferase inhibitor complex; HET:
0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A*
2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A*
2h9v_A*
Length = 410
Score = 82.8 bits (205), Expect = 9e-21
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 15 RNGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFDEYPETDWK----AAPS 70
RNG +++KRH +FK W R P+VP++ D DT NFD+ E + P
Sbjct: 321 RNGVEEIKRHLFFKNDQWAWETLRDTVAPVVPDLSSDIDTSNFDDLEEDKGEEETFPIPK 380
Query: 71 VGETEQSLFDDF 82
Q F F
Sbjct: 381 AFVGNQLPFVGF 392
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA;
HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Length = 437
Score = 71.7 bits (176), Expect = 1e-16
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 15 RNGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFDEYPETDWKAAPSVGET 74
+NG +D K+H +F G+DW ++ R + P +PEV DT NFD + K + ++
Sbjct: 330 QNGIEDFKKHPFFSGIDWDNI--RNCEAPYIPEVSSPTDTSNFDVD-DDCLKNSETMPPP 386
Query: 75 EQSLF 79
+ F
Sbjct: 387 THTAF 391
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase,
ATP-BI nucleotide-binding, cardiac contractility, muscle
different; HET: BI8; 2.80A {Homo sapiens}
Length = 412
Score = 67.4 bits (165), Expect = 4e-15
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 15 RNGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFDEYPETDWKAAPSVGET 74
R GA D + H +F G+DW + R PP P+ DT NFD E A S G
Sbjct: 319 RGGAGDFRTHPFFFGLDWDGL--RDSVPPFTPDFEGATDTCNFDLV-EDGLTAMVSGGGE 375
Query: 75 EQS 77
S
Sbjct: 376 TLS 378
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase,
transferase, serine/threonine-protein kinase; HET: TPO
ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A*
2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A*
3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A
1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Length = 337
Score = 65.3 bits (160), Expect = 1e-14
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 16 NGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFDE------------YPET 63
+ A +V HR+F ++WQDV ++ PP P+V + DTR FD+
Sbjct: 253 SDAKEVMEHRFFLSINWQDVVQKKLLPPFKPQVTSEVDTRYFDDEFTAQSITITPPDRYD 312
Query: 64 DWKAAPSVGETEQSLFDDF 82
EQ +F+DF
Sbjct: 313 SLGLLELDQREEQEMFEDF 331
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo
sapiens} PDB: 3a8w_A* 1zrz_A*
Length = 345
Score = 64.9 bits (159), Expect = 2e-14
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 15 RNGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFD-----EYPETDWKAAP 69
+ G D++ H +F+ VDW + ++ PP P + + NFD E +
Sbjct: 267 QTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNISGEFGLDNFDSQFTNEPVQLTPDDDD 326
Query: 70 SVGETEQSLFDDF 82
V + +QS F+ F
Sbjct: 327 IVRKIDQSEFEGF 339
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase,
transferase-transferase inhibito; HET: TPO 07U; 2.05A
{Homo sapiens}
Length = 353
Score = 64.9 bits (159), Expect = 2e-14
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 15 RNGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFD-----EYPETDWKAAP 69
+ G + RH +FK +DW + +R+ +PP P + D NFD E P
Sbjct: 272 QGGEHAILRHPFFKEIDWAQLNHRQIEPPFRPRIKSREDVSNFDPDFIKEEPVLTPIDEG 331
Query: 70 SVGETEQSLFDDF 82
+ Q F +F
Sbjct: 332 HLPMINQDEFRNF 344
>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of
P90 ribosomal S6 kinase 2, ATP- binding,
nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus
musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A*
Length = 325
Score = 64.9 bits (159), Expect = 2e-14
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 16 NGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFDE 59
+G +++KRH +F +DW +Y R PP P DT FD
Sbjct: 274 DGVEEIKRHSFFSTIDWNKLYRREIHPPFKPATGRPEDTFYFDP 317
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive,
active, ribosomal S6 kinase, activation, alternative
initiation, ATP-binding; HET: TPO STU; 2.35A {Homo
sapiens} PDB: 3a61_A* 3a60_A*
Length = 327
Score = 64.5 bits (158), Expect = 3e-14
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 16 NGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFDE 59
A +V+ H +F+ ++W+++ R+ +PP P + + D FD
Sbjct: 269 GDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQFDS 312
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity,
atypical PKC, trans transferase substrate complex; HET:
TPO ADE; 2.40A {Mus musculus}
Length = 396
Score = 64.3 bits (157), Expect = 4e-14
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 15 RNGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFD-----EYPETDWKAAP 69
+ G D++ H +F+ VDW + ++ PP P + + NFD E +
Sbjct: 310 QTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNISGEFGLDNFDSQFTNEPVQLTPDDDD 369
Query: 70 SVGETEQSLFDDF 82
V + +QS F+ F
Sbjct: 370 IVRKIDQSEFEGF 382
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase,
apoptosis, ATP-binding, cytoplasm, endoplasmic
reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A
{Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Length = 373
Score = 63.8 bits (156), Expect = 6e-14
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 15/81 (18%)
Query: 15 RNGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFDEYPE-TDWKAAPSVGE 73
++ ++K H +F ++W D+ ++ PP P V D R+FD PE T+ ++G+
Sbjct: 285 KDDFMEIKSHVFFSLINWDDLINKKITPPFNPNVSGPNDLRHFD--PEFTEEPVPNAIGK 342
Query: 74 T------------EQSLFDDF 82
F F
Sbjct: 343 APDSVLVTASVKEAAEAFLGF 363
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase,
phosphorylation, serine/threonine protein kinase; 1.8A
{Homo sapiens} SCOP: d.144.1.7
Length = 355
Score = 62.7 bits (153), Expect = 1e-13
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 16 NGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNF 57
AD++K H +F+ ++W D+ ++ P P + + D NF
Sbjct: 314 RDADEIKEHLFFQKINWDDLAAKKVPAPFKPVIRDELDVSNF 355
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase;
HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7
PDB: 2jed_A*
Length = 345
Score = 62.2 bits (152), Expect = 2e-13
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 17 GADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFD-----EYPETDWKAAPSV 71
D+++H F+ ++W+++ + PP P+V D NFD E P + +
Sbjct: 263 VRGDIRQHPLFREINWEELERKEIDPPFRPKVKSPFDCSNFDKEFLNEKPRLSFADRALI 322
Query: 72 GETEQSLFDDF 82
+Q++F +F
Sbjct: 323 NSMDQNMFRNF 333
>3pvu_A Beta-adrenergic receptor kinase 1; transferase,
serine/threonine-protein kinase, ATP-binding, I
membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A*
3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A*
1bak_A
Length = 695
Score = 62.2 bits (151), Expect = 3e-13
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 16 NGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDG-----DTRNFDEYPETDWKAAPS 70
GA +VK +F+ +DWQ V+ ++ PP++P D +FDE +
Sbjct: 442 RGAQEVKESPFFRSLDWQMVFLQKYPPPLIPPRGEVNAADAFDIGSFDE----EDTKGIK 497
Query: 71 VGETEQSLFDDF 82
+ +++Q L+ +F
Sbjct: 498 LLDSDQELYRNF 509
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 61.6 bits (149), Expect = 4e-13
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 16 NGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFD-----EYPETDWKAAPS 70
G D+K H +F+ +DW+ + + +PP P+ + NFD P
Sbjct: 590 EGERDIKEHAFFRYIDWEKLERKEIQPPYKPKAS-GRNAENFDRFFTRHPPVLTPPDQEV 648
Query: 71 VGETEQSLFDDF 82
+ +QS F+ F
Sbjct: 649 IRNIDQSEFEGF 660
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition,
allosteric inhibitor, kinase inhibitor hydrophobic
collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB:
3o96_A*
Length = 446
Score = 61.3 bits (149), Expect = 5e-13
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 16 NGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFDE 59
A ++ +HR+F G+ WQ VY ++ PP P+V + DTR FDE
Sbjct: 397 EDAKEIMQHRFFAGIVWQHVYEKKLSPPFKPQVTSETDTRYFDE 440
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase,
transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB:
3iw4_A*
Length = 353
Score = 61.1 bits (149), Expect = 5e-13
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 16 NGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFD-----EYPETDWKAAPS 70
G D+K H +F+ +DW+ + + +PP P+ + NFD P
Sbjct: 269 EGERDIKEHAFFRYIDWEKLERKEIQPPYKPKAC-GRNAENFDRFFTRHPPVLTPPDQEV 327
Query: 71 VGETEQSLFDDF 82
+ +QS F+ F
Sbjct: 328 IRNIDQSEFEGF 339
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP;
2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Length = 576
Score = 60.2 bits (146), Expect = 1e-12
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 16 NGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVH--YDGDTRNFDEYPETDWKAAPSVGE 73
A +VK H FK ++++ + +PP P+ Y D + +++ +
Sbjct: 437 GSAREVKEHPLFKKLNFKRLGAGMLEPPFKPDPQAIYCKDVLDIEQFST---VKGVELEP 493
Query: 74 TEQSLFDDF 82
T+Q + F
Sbjct: 494 TDQDFYQKF 502
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein
coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl
ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB:
3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Length = 543
Score = 55.9 bits (135), Expect = 4e-11
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Query: 16 NGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFDEYPETDWKAAPSVGETE 75
D ++ H F+ + W+ + PP VP+ D + + +
Sbjct: 441 GSCDGLRTHPLFRDISWRQLEAGMLTPPFVPDSRTVYAKNIQDV-GAFSTVKGVAFEKAD 499
Query: 76 QSLFDDF 82
F +F
Sbjct: 500 TEFFQEF 506
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics,
structural genomics consortium, SGC, TR; HET: STU; 2.29A
{Homo sapiens}
Length = 384
Score = 53.5 bits (129), Expect = 2e-10
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 17 GADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFDE 59
DV+ + ++W V+ +R P +P N D
Sbjct: 265 QLSDVQNFPYMNDINWDAVFQKRLIPGFIPNK----GRLNCDP 303
>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB,
inhibitor, LY333531, diabetes, cancer, transferase,
serine/threonine-protein kinase; HET: SEP LY4; 1.7A
{Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A*
1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A*
3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A*
3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ...
Length = 310
Score = 49.5 bits (119), Expect = 7e-09
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 13 KLRNGADDVKRHRWFKGVDWQDVYYRRQKPPIVP 46
+ G +K H +F+ V W++++ +Q PP +
Sbjct: 278 EEMEGYGPLKAHPFFESVTWENLH--QQTPPKLT 309
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding,
serine/threonine-protein kinase, ATP-binding,
transferase, coiled coil, cell division, kinase; HET:
TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A*
3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A*
3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A*
2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Length = 284
Score = 32.2 bits (74), Expect = 0.009
Identities = 9/34 (26%), Positives = 10/34 (29%), Gaps = 6/34 (17%)
Query: 15 RNGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEV 48
R V H W K RR PP+
Sbjct: 254 RLPLKGVMEHPWVK------ANSRRVLPPVYQST 281
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase,
transferase; HET: ANP; 2.60A {Plasmodium falciparum}
PDB: 2pmn_X* 2pmo_X*
Length = 348
Score = 28.9 bits (65), Expect = 0.13
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 15 RNGADDVKRHRWFKGVDWQDV 35
R ++D +H W + +D+
Sbjct: 314 RITSEDALKHEWLADTNIEDL 334
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S
genomics consortium, SGC, oxidoreductase; HET: NAD UPG;
2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A*
3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Length = 467
Score = 25.2 bits (56), Expect = 2.7
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 26 W--FKGVDWQDVYYRRQKPPIVPEVHYDGDTRN 56
W FK +D++ ++ + KP + +DG R
Sbjct: 418 WDMFKELDYERIHKKMLKPAFI----FDG--RR 444
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors,
virtual screening, X-RAY CO- crystal analysis,
structure-based drug design (SBDD); HET: MMH; 1.90A
{Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A*
2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A*
3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A*
3lau_A* 2wtv_A* ...
Length = 279
Score = 24.5 bits (54), Expect = 4.9
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 15 RNGADDVKRHRWFKGVDWQDVYYRRQKPP 43
R +V H W + + ++
Sbjct: 249 RPMLREVLEHPWITANSSKPSNCQNKESA 277
>3k3w_B Penicillin G acylase; hydrolase; 3.31A {Alcaligenes faecalis} PDB:
3ml0_B
Length = 551
Score = 23.8 bits (51), Expect = 7.7
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 29 GVDWQDVYYRRQKPPIVPEVHYDGDTRNFDEYPET-DWKAAPSV 71
D D+Y + P + ++ R ++ E +
Sbjct: 71 PQDVVDIYQEKLNPSRADQYWFNNAWRTMEQRKERIQVRGQADR 114
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint,
transferase-transferase inhib complex; HET: S25; 1.60A
{Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A*
2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Length = 323
Score = 23.8 bits (52), Expect = 8.4
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 7/65 (10%)
Query: 19 DDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFDEYPETDWKAAPSVGE--TEQ 76
D+K+ RW+ + K P V F ++ +++ +P T
Sbjct: 257 PDIKKDRWY-----NKPLKKGAKRPRVTSGGVSESPSGFSKHIQSNLDFSPVNSASRTPG 311
Query: 77 SLFDD 81
S +
Sbjct: 312 SGWSK 316
>1tue_B Regulatory protein E2; helicase, replication, E1E2 complex, AAA+
protein; 2.10A {Human papillomavirus type 18} SCOP:
b.91.1.1
Length = 218
Score = 23.5 bits (51), Expect = 9.0
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 41 KPPIVPEVHYDGDTRNFDEYPETDWK 66
K +V++DG+ N Y W
Sbjct: 119 KGGQTVQVYFDGNKDNCMTY--VAWD 142
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.449
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,401,037
Number of extensions: 70087
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 41
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)