RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8369
(82 letters)
>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 350
Score = 76.8 bits (188), Expect = 4e-19
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 11 FLKLRNGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFDEYPETDWKAAPS 70
F L+NG +D+K H+WF DW +Y R+ + P +P+ GDT NFD+Y E + + + +
Sbjct: 281 FGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSIN 340
Query: 71 VGETEQSLFDDF 82
E F +F
Sbjct: 341 --EKCGKEFTEF 350
>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 316
Score = 72.0 bits (176), Expect = 2e-17
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 14 LRNGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEV-HYDGDTRNFDEYPETDWKAAPSVG 72
L+NG +DVK H WFK V W+ + R + P P + GDT FD+YPE D
Sbjct: 247 LQNGTEDVKNHPWFKEVVWEKLLSRNIETPYEPPIQQGQGDTSQFDKYPEEDINYGVQGE 306
Query: 73 ETEQSLFDDF 82
+ LF DF
Sbjct: 307 DPYADLFRDF 316
>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2
{Cow (Bos taurus) [TaxId: 9913]}
Length = 364
Score = 64.4 bits (156), Expect = 1e-14
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 14 LRNGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFD-EYPETDWKAAPSVG 72
L GA +VK +F+ +DWQ V+ ++ PP++P FD + + +
Sbjct: 255 LGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIPPRGEVNAADAFDIGSFDEEDTKGIKLL 314
Query: 73 ETEQSLFDDF 82
+++Q L+ +F
Sbjct: 315 DSDQELYRNF 324
>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 337
Score = 63.6 bits (154), Expect = 3e-14
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 15 RNGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFDEY------------PE 62
+ A +V HR+F ++WQDV ++ PP P+V + DTR FD+
Sbjct: 252 PSDAKEVMEHRFFLSINWQDVVQKKLLPPFKPQVTSEVDTRYFDDEFTAQSITITPPDRY 311
Query: 63 TDWKAAPSVGETEQSLFDDF 82
EQ +F+DF
Sbjct: 312 DSLGLLELDQREEQEMFEDF 331
>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo
sapiens) [TaxId: 9606]}
Length = 320
Score = 62.8 bits (152), Expect = 4e-14
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 18 ADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFD-----EYPETDWKAAPSVG 72
D+++H F+ ++W+++ + PP P+V D NFD E P + +
Sbjct: 249 RGDIRQHPLFREINWEELERKEIDPPFRPKVKSPFDCSNFDKEFLNEKPRLSFADRALIN 308
Query: 73 ETEQSLFDDF 82
+Q++F +F
Sbjct: 309 SMDQNMFRNF 318
>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 322
Score = 51.0 bits (121), Expect = 8e-10
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 15 RNGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGD 53
AD++K H +F+ ++W D+ ++ P P + + D
Sbjct: 283 PRDADEIKEHLFFQKINWDDLAAKKVPAPFKPVIRDELD 321
>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein
kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 38.8 bits (90), Expect = 1e-05
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 16 NGADDVKRHRWFKGVDWQDVYYRRQKPPIVP 46
G +K H +F+ V W+++ +Q PP +
Sbjct: 259 EGYGPLKAHPFFESVTWENL--HQQTPPKLT 287
>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human
(Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 37.0 bits (85), Expect = 7e-05
Identities = 9/31 (29%), Positives = 10/31 (32%)
Query: 13 KLRNGADDVKRHRWFKGVDWQDVYYRRQKPP 43
K R D +H W K D Q P
Sbjct: 260 KKRMTIQDSLQHPWIKPKDTQQALSSAWSHP 290
>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein
kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 322
Score = 30.4 bits (68), Expect = 0.015
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 13 KLRNGADDVKRHRWFKGVDWQDV 35
R + H + K D ++V
Sbjct: 287 AERADLKQLMVHAFIKRSDAEEV 309
>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain
{Caenorhabditis elegans, pjk4 [TaxId: 6239]}
Length = 350
Score = 28.5 bits (63), Expect = 0.075
Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 10/78 (12%)
Query: 13 KLRNGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFDEYPE--------TD 64
R H W + Q P D +D +PE ++
Sbjct: 269 NTRMTIHQALEHPWLTPGNAPGR--DSQIPSSRYTKIRDSIKTKYDAWPEPLPPLGRISN 326
Query: 65 WKAAPSVGETEQSLFDDF 82
+ + E S+ D F
Sbjct: 327 YSSLRKHRPQEYSIRDAF 344
>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit
{Rattus norvegicus [TaxId: 10116]}
Length = 328
Score = 28.3 bits (62), Expect = 0.096
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 13 KLRNGADDVKRHRWFKGVDW 32
+ R A + H +F V
Sbjct: 308 QSRLTAREAMEHPYFYTVVK 327
>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 307
Score = 26.5 bits (58), Expect = 0.35
Identities = 5/47 (10%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 13 KLRNGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFDE 59
+ R + +H W G D + + ++ + + +
Sbjct: 253 EKRFTCEQALQHPWIAGDTALD---KNIHQSVSEQIKKNFAKSKWKQ 296
>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein
kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 273
Score = 25.8 bits (56), Expect = 0.69
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 13 KLRNGADDVKRHRWFKGV 30
R ++++ H W + V
Sbjct: 244 SDRPTFEEIQNHPWMQDV 261
>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens)
[TaxId: 9606]}
Length = 346
Score = 25.6 bits (55), Expect = 0.76
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 13 KLRNGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFDEYPETDWK 66
+ R A + H +F+ + + + QK +D R DE+ +K
Sbjct: 290 EQRVTAGEALAHPYFESLHDTEDEPQVQKYDD----SFDDVDRTLDEWKRVTYK 339
>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 305
Score = 25.6 bits (55), Expect = 0.79
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 13 KLRNGADDVKRHRWFKGVDW 32
R A H +F+ ++
Sbjct: 282 AKRISAYSALSHPYFQDLER 301
>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 355
Score = 25.3 bits (54), Expect = 0.86
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 13 KLRNGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFDEYPETDWK 66
R DD +H + W D PP + + D +E+ E +K
Sbjct: 300 AKRISVDDALQHPYIN--VWYDPAEVEAPPPQIYDKQLDEREHTIEEWKELIYK 351
>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare
(Aplysia californica), twk43 [TaxId: 6500]}
Length = 352
Score = 24.6 bits (53), Expect = 1.6
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 7/63 (11%)
Query: 15 RNGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFDEYPETDWKAAPSVGET 74
R D H W KG D ++ +P Y+ + E P++G
Sbjct: 274 RLTVHDALEHPWLKG-DHSNL------TSRIPSSRYNKIRQKIKEKYADWPAPQPAIGRI 326
Query: 75 EQS 77
Sbjct: 327 ANF 329
>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 270
Score = 23.8 bits (51), Expect = 3.1
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 13 KLRNGADDVKRHRWFK 28
R D+ H +F+
Sbjct: 255 DERYSIKDLLNHAFFQ 270
>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 23.8 bits (51), Expect = 3.5
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 13 KLRNGADDVKRHRWFK 28
R D+K+ RW+
Sbjct: 249 SARITIPDIKKDRWYN 264
>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 350
Score = 23.6 bits (50), Expect = 4.1
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 13 KLRNGADDVKRHRWFKGVDWQDV 35
R + H +F + +V
Sbjct: 292 TARLTPLEACAHSFFDELRDPNV 314
>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 23.4 bits (50), Expect = 4.2
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 15 RNGADDVKRHRWFK 28
R A ++ +H++ K
Sbjct: 261 RGSAKELLQHQFLK 274
>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 298
Score = 23.3 bits (49), Expect = 4.9
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 13 KLRNGADDVKRHRWFKGV 30
R A H +F+ V
Sbjct: 272 NKRISAKAALAHPFFQDV 289
>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 321
Score = 23.1 bits (49), Expect = 6.5
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 13 KLRNGADDVKRHRWFK 28
K R A + +H W K
Sbjct: 247 KSRMTASEALQHPWLK 262
>d1gv8a_ c.94.1.2 (A:) Ovotransferrin {Duck (Anas platyrhynchos)
[TaxId: 8839]}
Length = 159
Score = 22.6 bits (48), Expect = 7.2
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 51 DGDTRNFDEYPETDWKAAPS 70
DG + D Y +W +
Sbjct: 140 DGTRQPVDSYKTCNWARVAA 159
>d2bs2a3 d.168.1.1 (A:251-371) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 121
Score = 22.4 bits (47), Expect = 7.8
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 5/24 (20%)
Query: 27 FKGVDWQDVYYRRQKPPIVPEVHY 50
F G+D + P++P HY
Sbjct: 102 FAGIDP-----AEKWAPVLPMQHY 120
>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase
kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId:
9986]}
Length = 277
Score = 22.7 bits (48), Expect = 8.0
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 13 KLRNGADDVKRHRWFK 28
+ R A++ H +F+
Sbjct: 259 QKRYTAEEALAHPFFQ 274
>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 362
Score = 22.7 bits (47), Expect = 9.0
Identities = 8/47 (17%), Positives = 13/47 (27%), Gaps = 4/47 (8%)
Query: 13 KLRNGADDVKRHRWFKGVDWQDVYYRRQKPPIVPEVHYDGDTRNFDE 59
+ R A + H W K + + P D + E
Sbjct: 317 RKRADAGGLVNHPWLKDTLGME----EIRVPDRELYGSGSDIPGWFE 359
>d1neka3 d.168.1.1 (A:236-355) Succinate dehydogenase {Escherichia
coli [TaxId: 562]}
Length = 120
Score = 22.3 bits (47), Expect = 9.3
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 5/24 (20%)
Query: 27 FKGVDWQDVYYRRQKPPIVPEVHY 50
F VD ++ P++P HY
Sbjct: 102 FAHVDP-----VKEPIPVIPTCHY 120
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.449
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 356,841
Number of extensions: 14907
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 48
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.5 bits)