BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy837
(226 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XTS|A Chain A, Crystal Structure Of The Sulfane Dehydrogenase Soxcd From
Paracoccus Pantotrophus
pdb|2XTS|C Chain C, Crystal Structure Of The Sulfane Dehydrogenase Soxcd From
Paracoccus Pantotrophus
Length = 390
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 18/92 (19%)
Query: 46 EYKKSTDL--DAETKKWVWELEEKNM-------------KHSYEVCDIGWDPQGKHSEM- 89
E K TDL D +KW W ++ K++ K + + W G+ + +
Sbjct: 242 ETSKYTDLMPDGRARKWTWVMDAKSVITSPSPQVPIRHGKGPLVISGLAWSGNGRITRVD 301
Query: 90 --FDDRACYLVAKNGSSSTPVAFSHFRFDVDF 119
D + A+ + P A + F D+D+
Sbjct: 302 VSLDGGKNWTTARITGQALPKALTRFHLDIDW 333
>pdb|2E18|A Chain A, Crystal Structure Of Project Ph0182 From Pyrococcus
Horikoshii Ot3
pdb|2E18|B Chain B, Crystal Structure Of Project Ph0182 From Pyrococcus
Horikoshii Ot3
Length = 257
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 121 EPVLYCYELQLEKQVQRKGLGKFM--MQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSL 178
+P++ + LE + RKGLG M +++ L A N++ ++VL T + +F
Sbjct: 84 KPIVDSFVENLELNLDRKGLGNIMSRTRMIMLYAHANSLGRIVLGTSNRSEFLTGYFTKW 143
Query: 179 NYSVDDTSP 187
D +P
Sbjct: 144 GDGASDYAP 152
>pdb|3F0A|A Chain A, Structure Of A Putative N-Acetyltransferase (Ta0374) In
Complex With Acetyl-Coa From Thermoplasma Acidophilum
Length = 162
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 103 SSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVL 162
+ ST + F + + E + L L+ + K +GK ++ E + K + + L
Sbjct: 73 ADSTLIGFIELKIIANKAELL----RLYLKPEYTHKKIGKTLLLEAEKIXKKKGILECRL 128
Query: 163 TTFKHNPDGLNFFYSLNYSVDDTSPED 189
+ N G +F+Y + V+DT D
Sbjct: 129 YVHRQNSVGFSFYYKNGFKVEDTDGSD 155
>pdb|3NE7|A Chain A, Crystal Structure Of Paia N-Acetyltransferase From
Thermoplasma Acidophilum In Complex With Coenzyme A
Length = 159
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 103 SSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVL 162
+ ST + F + + E + L L+ + K +GK ++ E + K + + L
Sbjct: 70 ADSTLIGFIELKIIANKAELL----RLYLKPEYTHKKIGKTLLLEAEKIXKKKGILECRL 125
Query: 163 TTFKHNPDGLNFFYSLNYSVDDTSPED 189
+ N G +F+Y + V+DT D
Sbjct: 126 YVHRQNSVGFSFYYKNGFKVEDTDGSD 152
>pdb|3FIX|A Chain A, Crystal Structure Of A Putative N-Acetyltransferase
(Ta0374) From Thermoplasma Acidophilum
pdb|3FIX|B Chain B, Crystal Structure Of A Putative N-Acetyltransferase
(Ta0374) From Thermoplasma Acidophilum
pdb|3FIX|C Chain C, Crystal Structure Of A Putative N-Acetyltransferase
(Ta0374) From Thermoplasma Acidophilum
pdb|3FIX|D Chain D, Crystal Structure Of A Putative N-Acetyltransferase
(Ta0374) From Thermoplasma Acidophilum
Length = 183
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 103 SSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVL 162
+ ST + F + + E + L L+ + K +GK ++ E + K + + L
Sbjct: 94 ADSTLIGFIELKIIANKAELL----RLYLKPEYTHKKIGKTLLLEAEKIXKKKGILECRL 149
Query: 163 TTFKHNPDGLNFFYSLNYSVDDTSPED 189
+ N G +F+Y + V+DT D
Sbjct: 150 YVHRQNSVGFSFYYKNGFKVEDTDGSD 176
>pdb|3K9U|A Chain A, Crystal Structure Of Paia Acetyltransferase (Ta0374) From
Thermoplasma Acidophilum
pdb|3K9U|B Chain B, Crystal Structure Of Paia Acetyltransferase (Ta0374) From
Thermoplasma Acidophilum
Length = 159
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 103 SSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVL 162
+ ST + F + + E + L L+ + K +GK ++ E + K + + L
Sbjct: 70 ADSTLIGFIELKIIANKAELL----RLYLKPEYTHKKIGKTLLLEAEKIMKKKGILECRL 125
Query: 163 TTFKHNPDGLNFFYSLNYSVDDTSPED 189
+ N G +F+Y + V+DT D
Sbjct: 126 YVHRQNSVGFSFYYKNGFKVEDTDGSD 152
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 71 HSYEVCDIGWDPQGKH 86
HS EVC + W P G+H
Sbjct: 229 HSQEVCGLRWAPDGRH 244
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 71 HSYEVCDIGWDPQGKH 86
HS EVC + W P G+H
Sbjct: 240 HSQEVCGLRWAPDGRH 255
>pdb|3IKO|C Chain C, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|F Chain F, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|I Chain I, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
Length = 460
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 19 EAHKVDNPLEPFTVFKTFKKNGLDLVIEYKKSTDLDAETKKWVWELEEK 67
E + NP++PF + + F+ L ++ S D WELE +
Sbjct: 25 EQNNEQNPIDPFNIIREFRSAAGQLALDLANSGDESNVISSKDWELEAR 73
>pdb|3JRO|C Chain C, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 426
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 19 EAHKVDNPLEPFTVFKTFKKNGLDLVIEYKKSTDLDAETKKWVWELEEK 67
E + NP++PF + + F+ L ++ S D WELE +
Sbjct: 27 EQNNEQNPIDPFNIIREFRSAAGQLALDLANSGDESNVISSKDWELEAR 75
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 71 HSYEVCDIGWDPQGKH 86
HS EVC + W P G+H
Sbjct: 149 HSQEVCGLRWAPDGRH 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,138,066
Number of Sequences: 62578
Number of extensions: 302457
Number of successful extensions: 557
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 16
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)