Query psy837
Match_columns 226
No_of_seqs 207 out of 2415
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 16:54:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2488|consensus 100.0 1.4E-39 3E-44 255.0 13.3 187 2-206 13-199 (202)
2 PRK10146 aminoalkylphosphonic 99.8 8.9E-18 1.9E-22 128.9 11.3 126 53-185 9-138 (144)
3 KOG3139|consensus 99.7 2.4E-16 5.1E-21 121.4 14.9 133 50-190 19-151 (165)
4 PRK10140 putative acetyltransf 99.7 2E-16 4.3E-21 123.5 14.5 106 96-204 53-160 (162)
5 TIGR03827 GNAT_ablB putative b 99.7 1.6E-16 3.5E-21 135.1 15.0 151 45-206 116-266 (266)
6 PRK09491 rimI ribosomal-protei 99.7 7.3E-16 1.6E-20 119.0 16.9 140 52-206 6-146 (146)
7 PF00583 Acetyltransf_1: Acety 99.7 2E-16 4.3E-21 110.1 11.6 78 104-181 4-83 (83)
8 TIGR01575 rimI ribosomal-prote 99.7 3.9E-16 8.4E-21 117.1 13.0 106 79-190 16-121 (131)
9 COG1247 Sortase and related ac 99.7 8.4E-16 1.8E-20 121.2 14.3 163 46-208 3-166 (169)
10 KOG3216|consensus 99.7 9.4E-16 2E-20 117.0 13.7 90 96-185 55-146 (163)
11 PRK10314 putative acyltransfer 99.7 2.3E-15 5E-20 117.9 14.3 147 44-206 3-150 (153)
12 PRK03624 putative acetyltransf 99.7 3.1E-15 6.8E-20 113.2 13.8 126 45-185 3-130 (140)
13 TIGR02406 ectoine_EctA L-2,4-d 99.7 2.9E-15 6.4E-20 117.6 14.0 126 52-186 3-129 (157)
14 TIGR02382 wecD_rffC TDP-D-fuco 99.7 3.1E-15 6.7E-20 121.0 14.4 79 104-185 107-185 (191)
15 PTZ00330 acetyltransferase; Pr 99.7 2.5E-15 5.4E-20 115.6 12.9 85 97-185 54-141 (147)
16 PRK10975 TDP-fucosamine acetyl 99.6 1.2E-14 2.7E-19 117.7 15.3 88 95-186 102-189 (194)
17 PF13673 Acetyltransf_10: Acet 99.6 1.6E-14 3.6E-19 106.7 14.2 111 57-180 1-117 (117)
18 TIGR03103 trio_acet_GNAT GNAT- 99.6 2.6E-14 5.6E-19 132.7 17.0 132 45-185 83-217 (547)
19 PRK10514 putative acetyltransf 99.6 4.2E-14 9.2E-19 108.7 13.8 123 53-190 7-131 (145)
20 COG0456 RimI Acetyltransferase 99.6 2.1E-14 4.5E-19 113.7 12.1 112 79-190 40-159 (177)
21 PF13420 Acetyltransf_4: Acety 99.6 1.5E-14 3.3E-19 112.3 11.1 131 53-190 4-144 (155)
22 PRK10809 ribosomal-protein-S5- 99.6 3.6E-13 7.8E-18 108.8 17.1 108 97-205 78-186 (194)
23 PRK09831 putative acyltransfer 99.6 1E-13 2.2E-18 107.3 13.1 132 52-205 5-144 (147)
24 PHA01807 hypothetical protein 99.6 7.6E-14 1.7E-18 109.2 12.3 125 52-178 8-136 (153)
25 PRK10151 ribosomal-protein-L7/ 99.5 4.3E-13 9.4E-18 106.9 16.3 153 52-208 15-178 (179)
26 PRK15130 spermidine N1-acetylt 99.5 2.8E-13 6E-18 108.7 14.9 151 53-208 12-168 (186)
27 TIGR03448 mycothiol_MshD mycot 99.5 3.6E-13 7.8E-18 115.4 16.4 91 95-186 199-289 (292)
28 TIGR01686 FkbH FkbH-like domai 99.5 3.3E-13 7.1E-18 117.7 16.3 135 39-183 181-319 (320)
29 PLN02706 glucosamine 6-phospha 99.5 4.8E-13 1E-17 103.5 15.5 79 104-185 63-144 (150)
30 PF13508 Acetyltransf_7: Acety 99.5 1.9E-13 4.2E-18 94.8 11.8 77 94-182 3-79 (79)
31 TIGR03585 PseH pseudaminic aci 99.5 5.1E-13 1.1E-17 103.7 14.8 147 51-202 4-155 (156)
32 PF13523 Acetyltransf_8: Acety 99.5 2E-13 4.4E-18 106.0 12.5 131 55-187 7-143 (152)
33 PRK10562 putative acetyltransf 99.5 2.5E-13 5.5E-18 104.7 12.6 136 52-205 4-141 (145)
34 PRK07922 N-acetylglutamate syn 99.5 3.4E-13 7.4E-18 107.2 13.7 121 53-189 11-131 (169)
35 PHA00673 acetyltransferase dom 99.5 2.5E-13 5.4E-18 105.7 12.4 132 48-184 7-145 (154)
36 TIGR03448 mycothiol_MshD mycot 99.5 3E-13 6.6E-18 115.9 13.7 121 51-184 4-127 (292)
37 PRK07757 acetyltransferase; Pr 99.5 2E-12 4.3E-17 100.2 14.0 80 96-185 43-122 (152)
38 PRK05279 N-acetylglutamate syn 99.4 2.5E-12 5.5E-17 116.8 13.6 118 52-186 299-418 (441)
39 PLN02825 amino-acid N-acetyltr 99.4 4E-12 8.7E-17 116.5 13.8 122 50-186 370-491 (515)
40 PRK12308 bifunctional arginino 99.4 3.5E-12 7.7E-17 120.2 13.2 124 45-188 464-587 (614)
41 PF13527 Acetyltransf_9: Acety 99.4 2.6E-12 5.6E-17 96.5 9.4 118 53-182 5-126 (127)
42 TIGR01890 N-Ac-Glu-synth amino 99.4 5.5E-12 1.2E-16 114.2 13.3 120 52-186 287-406 (429)
43 PRK13688 hypothetical protein; 99.3 1.5E-11 3.3E-16 96.6 11.1 86 92-187 43-135 (156)
44 PF13302 Acetyltransf_3: Acety 99.3 8.7E-11 1.9E-15 89.3 13.4 84 96-181 58-142 (142)
45 KOG3396|consensus 99.3 4.7E-11 1E-15 89.6 9.4 94 88-184 45-143 (150)
46 cd02169 Citrate_lyase_ligase C 99.2 5.2E-11 1.1E-15 102.6 10.8 73 104-187 14-87 (297)
47 KOG3235|consensus 99.2 3.2E-11 6.9E-16 92.8 8.1 107 97-207 44-154 (193)
48 KOG3234|consensus 99.2 2.4E-11 5.2E-16 93.3 7.4 114 97-211 43-156 (173)
49 PF08445 FR47: FR47-like prote 99.2 1.5E-10 3.4E-15 81.9 11.1 61 124-185 22-82 (86)
50 COG1246 ArgA N-acetylglutamate 99.2 3.2E-10 6.9E-15 87.5 9.7 119 53-186 6-124 (153)
51 KOG3138|consensus 99.1 1.3E-10 2.7E-15 93.1 7.1 86 123-209 89-175 (187)
52 PRK01346 hypothetical protein; 99.1 7.7E-10 1.7E-14 99.5 13.0 123 45-185 7-136 (411)
53 TIGR01211 ELP3 histone acetylt 99.1 4.6E-10 1E-14 103.4 11.2 87 95-184 412-515 (522)
54 KOG3397|consensus 99.1 5.4E-10 1.2E-14 87.3 9.7 131 36-184 6-140 (225)
55 TIGR00124 cit_ly_ligase [citra 99.1 9E-10 1.9E-14 96.4 12.2 96 94-211 31-126 (332)
56 COG1670 RimL Acetyltransferase 99.1 3.6E-09 7.8E-14 83.4 14.6 111 94-205 65-178 (187)
57 COG3981 Predicted acetyltransf 99.1 1.4E-09 3E-14 85.1 10.6 91 93-189 68-163 (174)
58 COG3153 Predicted acetyltransf 99.0 9.7E-09 2.1E-13 81.3 14.0 137 54-208 10-152 (171)
59 COG2153 ElaA Predicted acyltra 98.8 2.9E-08 6.2E-13 75.6 9.5 90 92-186 47-137 (155)
60 cd04301 NAT_SF N-Acyltransfera 98.8 3.1E-08 6.6E-13 63.5 7.9 58 105-163 8-65 (65)
61 COG3393 Predicted acetyltransf 98.8 7.2E-08 1.6E-12 80.5 10.4 87 93-185 176-262 (268)
62 PF13718 GNAT_acetyltr_2: GNAT 98.7 7.6E-07 1.7E-11 72.1 14.5 120 82-206 15-195 (196)
63 COG1444 Predicted P-loop ATPas 98.5 2.8E-06 6E-11 80.8 14.8 144 52-208 436-612 (758)
64 PF14542 Acetyltransf_CG: GCN5 98.4 1.6E-06 3.4E-11 60.1 8.2 65 105-178 8-72 (78)
65 COG3818 Predicted acetyltransf 98.2 1.1E-05 2.4E-10 60.5 8.4 70 118-187 79-150 (167)
66 PF12568 DUF3749: Acetyltransf 98.2 8.6E-05 1.9E-09 55.8 13.0 118 45-183 2-123 (128)
67 KOG4135|consensus 98.1 2.8E-05 6.2E-10 59.6 9.3 65 122-186 106-171 (185)
68 COG2388 Predicted acetyltransf 98.0 2.9E-05 6.2E-10 56.1 7.4 54 104-160 23-76 (99)
69 PF12746 GNAT_acetyltran: GNAT 98.0 6.6E-05 1.4E-09 63.8 10.6 83 96-187 167-249 (265)
70 COG0454 WecD Histone acetyltra 98.0 1.3E-05 2.8E-10 56.1 4.9 44 129-180 87-130 (156)
71 PF08444 Gly_acyl_tr_C: Aralky 98.0 3.9E-05 8.4E-10 54.2 7.0 73 104-184 7-79 (89)
72 PRK13834 putative autoinducer 97.7 0.0059 1.3E-07 50.1 16.7 133 48-189 8-169 (207)
73 PF01233 NMT: Myristoyl-CoA:pr 97.6 0.00088 1.9E-08 52.3 10.2 106 52-157 31-144 (162)
74 PF13480 Acetyltransf_6: Acety 97.6 0.0016 3.5E-08 48.8 11.4 104 54-164 27-135 (142)
75 TIGR03694 exosort_acyl putativ 97.5 0.0062 1.3E-07 51.2 15.1 129 52-189 13-202 (241)
76 PF00765 Autoind_synth: Autoin 97.5 0.0045 9.7E-08 49.8 13.5 127 53-189 5-159 (182)
77 COG1243 ELP3 Histone acetyltra 97.5 0.00015 3.3E-09 65.1 4.9 78 104-184 415-508 (515)
78 KOG4144|consensus 97.4 0.00015 3.2E-09 56.1 3.8 82 105-189 71-165 (190)
79 COG5628 Predicted acetyltransf 97.4 0.0016 3.5E-08 48.3 8.8 75 105-183 46-121 (143)
80 PF06852 DUF1248: Protein of u 97.4 0.0066 1.4E-07 48.7 12.9 122 52-185 9-137 (181)
81 COG3053 CitC Citrate lyase syn 97.3 0.0038 8.2E-08 53.3 11.2 93 96-209 38-130 (352)
82 COG4552 Eis Predicted acetyltr 97.2 0.001 2.2E-08 58.0 6.5 84 95-185 40-127 (389)
83 PF05301 Mec-17: Touch recepto 97.1 0.017 3.8E-07 42.9 11.2 82 104-189 17-108 (120)
84 KOG2535|consensus 96.4 0.0046 1E-07 54.0 4.5 48 134-184 498-546 (554)
85 COG3916 LasI N-acyl-L-homoseri 96.2 0.57 1.2E-05 38.3 15.9 129 52-189 11-167 (209)
86 KOG2779|consensus 96.0 0.019 4E-07 50.2 6.3 128 53-180 89-228 (421)
87 COG3375 Uncharacterized conser 96.0 0.13 2.9E-06 42.4 10.7 128 53-190 9-142 (266)
88 TIGR03019 pepcterm_femAB FemAB 95.9 0.21 4.5E-06 43.7 12.7 120 57-184 159-280 (330)
89 KOG4601|consensus 95.6 0.26 5.7E-06 40.7 11.1 117 57-177 29-159 (264)
90 PF04377 ATE_C: Arginine-tRNA- 95.6 0.21 4.5E-06 37.9 9.9 68 93-166 38-105 (128)
91 PF01853 MOZ_SAS: MOZ/SAS fami 95.3 0.098 2.1E-06 42.1 7.5 60 94-156 53-113 (188)
92 PRK01305 arginyl-tRNA-protein 95.1 0.21 4.5E-06 41.9 9.3 70 94-169 144-213 (240)
93 TIGR03827 GNAT_ablB putative b 95.1 0.073 1.6E-06 45.2 6.7 64 138-208 20-83 (266)
94 PF13880 Acetyltransf_13: ESCO 94.9 0.042 9.1E-07 37.1 3.6 28 124-151 6-33 (70)
95 cd04264 DUF619-NAGS DUF619 dom 94.7 0.3 6.4E-06 35.3 8.1 64 105-175 17-80 (99)
96 PRK02983 lysS lysyl-tRNA synth 94.0 1.8 3.8E-05 44.2 14.4 113 43-164 371-485 (1094)
97 PLN03238 probable histone acet 93.7 0.23 5E-06 42.5 6.6 58 96-156 130-188 (290)
98 PF04339 DUF482: Protein of un 93.3 2.6 5.6E-05 37.7 12.9 127 43-185 200-329 (370)
99 COG3882 FkbH Predicted enzyme 93.2 0.12 2.6E-06 47.2 4.3 77 104-184 471-549 (574)
100 cd04265 DUF619-NAGS-U DUF619 d 93.1 0.78 1.7E-05 33.1 7.7 49 121-175 32-80 (99)
101 KOG3698|consensus 92.9 0.75 1.6E-05 43.0 8.9 67 131-205 824-890 (891)
102 PLN03239 histone acetyltransfe 92.5 0.33 7.1E-06 42.7 5.9 30 127-156 217-246 (351)
103 PTZ00064 histone acetyltransfe 92.0 0.36 7.8E-06 44.3 5.7 49 105-156 369-417 (552)
104 PF09924 DUF2156: Uncharacteri 91.3 0.62 1.3E-05 40.1 6.4 117 39-163 129-245 (299)
105 PF11124 Pho86: Inorganic phos 91.3 5.7 0.00012 34.4 11.9 91 93-186 169-272 (304)
106 KOG2036|consensus 90.8 1.2 2.5E-05 42.9 7.9 31 123-153 614-644 (1011)
107 COG5092 NMT1 N-myristoyl trans 90.8 1.1 2.3E-05 39.0 7.0 113 44-156 78-198 (451)
108 PLN00104 MYST -like histone ac 90.7 0.35 7.5E-06 44.1 4.3 49 105-156 291-339 (450)
109 PF13444 Acetyltransf_5: Acety 90.4 1.3 2.8E-05 31.8 6.3 56 89-145 25-100 (101)
110 PHA00432 internal virion prote 89.3 4.4 9.6E-05 31.0 8.7 75 104-185 45-121 (137)
111 PHA01733 hypothetical protein 88.6 2.6 5.5E-05 32.8 7.0 80 104-188 55-135 (153)
112 KOG2747|consensus 88.3 0.68 1.5E-05 41.4 4.2 27 128-154 265-291 (396)
113 PF04958 AstA: Arginine N-succ 87.5 8.5 0.00018 34.1 10.5 59 123-182 121-185 (342)
114 COG2935 Putative arginyl-tRNA: 87.3 12 0.00027 31.4 10.7 126 52-189 104-233 (253)
115 PRK14852 hypothetical protein; 85.8 16 0.00034 36.9 12.4 123 52-185 34-181 (989)
116 TIGR03245 arg_AOST_alph argini 85.5 4.3 9.2E-05 35.8 7.5 24 124-147 119-142 (336)
117 COG2898 Uncharacterized conser 85.3 16 0.00035 34.3 11.6 110 43-163 345-457 (538)
118 KOG2696|consensus 79.8 3.2 6.9E-05 36.9 4.6 47 123-170 217-263 (403)
119 PF11090 DUF2833: Protein of u 79.6 6.2 0.00013 27.7 5.1 43 140-184 41-83 (86)
120 TIGR03243 arg_catab_AOST argin 79.6 6.3 0.00014 34.7 6.3 56 92-147 52-141 (335)
121 TIGR03244 arg_catab_AstA argin 77.9 7.4 0.00016 34.3 6.3 23 125-147 119-141 (336)
122 PRK10456 arginine succinyltran 77.8 7.6 0.00016 34.3 6.3 23 125-147 121-143 (344)
123 COG2401 ABC-type ATPase fused 77.7 1.2 2.5E-05 40.6 1.3 63 123-185 241-308 (593)
124 COG5630 ARG2 Acetylglutamate s 77.3 8.1 0.00018 34.6 6.3 94 84-187 366-462 (495)
125 PF11039 DUF2824: Protein of u 76.0 32 0.0007 26.2 9.2 93 90-190 34-127 (151)
126 COG5027 SAS2 Histone acetyltra 74.1 1.9 4.1E-05 37.9 1.6 25 128-152 267-291 (395)
127 cd04266 DUF619-NAGS-FABP DUF61 72.3 35 0.00077 25.0 7.7 49 121-175 37-87 (108)
128 PF04768 DUF619: Protein of un 64.5 52 0.0011 26.1 7.8 113 52-182 27-143 (170)
129 cd07235 MRD Mitomycin C resist 63.9 11 0.00024 27.0 3.7 28 158-186 2-29 (122)
130 KOG2779|consensus 59.3 62 0.0013 28.9 7.9 121 52-182 265-394 (421)
131 cd09012 Glo_EDI_BRP_like_24 Th 58.6 18 0.0004 26.0 4.1 26 160-186 4-29 (124)
132 cd08353 Glo_EDI_BRP_like_7 Thi 56.0 16 0.00034 27.0 3.4 30 156-186 3-32 (142)
133 KOG3014|consensus 54.9 79 0.0017 26.7 7.5 30 122-151 182-211 (257)
134 cd08356 Glo_EDI_BRP_like_17 Th 54.1 12 0.00025 26.8 2.4 19 169-187 13-31 (113)
135 PF02388 FemAB: FemAB family; 53.9 1.2E+02 0.0027 27.3 9.4 108 94-208 35-160 (406)
136 PHA02769 hypothetical protein; 50.8 39 0.00086 25.1 4.6 50 138-189 91-143 (154)
137 PF02474 NodA: Nodulation prot 50.6 1.3E+02 0.0028 24.1 8.6 101 120-224 82-194 (196)
138 cd08350 BLMT_like BLMT, a bleo 50.6 15 0.00032 26.4 2.5 19 169-187 14-32 (120)
139 PF09390 DUF1999: Protein of u 50.4 1.2E+02 0.0026 23.6 7.4 85 95-184 56-140 (161)
140 PF04816 DUF633: Family of unk 47.9 20 0.00043 29.3 3.1 64 138-205 73-138 (205)
141 PRK04531 acetylglutamate kinas 45.3 1.5E+02 0.0032 26.9 8.5 48 122-175 309-356 (398)
142 COG3138 AstA Arginine/ornithin 41.5 36 0.00078 29.4 3.6 21 126-146 122-142 (336)
143 PF00925 GTP_cyclohydro2: GTP 41.4 24 0.00053 27.8 2.5 47 132-187 122-168 (169)
144 cd08342 HPPD_N_like N-terminal 38.2 51 0.0011 24.3 3.8 29 158-187 2-31 (136)
145 COG2384 Predicted SAM-dependen 36.6 97 0.0021 25.8 5.3 63 138-205 92-157 (226)
146 COG3607 Predicted lactoylgluta 36.5 34 0.00074 25.8 2.4 21 169-189 15-35 (133)
147 PRK09318 bifunctional 3,4-dihy 35.9 65 0.0014 29.1 4.6 51 130-189 308-358 (387)
148 PF12953 DUF3842: Domain of un 35.1 1.2E+02 0.0026 23.0 5.2 53 134-190 6-58 (131)
149 COG0346 GloA Lactoylglutathion 34.8 56 0.0012 22.5 3.5 32 157-189 3-35 (138)
150 cd07253 Glo_EDI_BRP_like_2 Thi 34.2 62 0.0013 22.6 3.6 31 156-187 3-34 (125)
151 cd08344 MhqB_like_N N-terminal 33.9 49 0.0011 23.2 3.0 30 156-186 2-31 (112)
152 PF02100 ODC_AZ: Ornithine dec 33.8 81 0.0017 23.0 4.1 63 121-186 23-88 (108)
153 cd08346 PcpA_N_like N-terminal 33.5 56 0.0012 22.9 3.3 31 156-187 1-32 (126)
154 cd07267 THT_Oxygenase_N N-term 33.3 48 0.001 23.4 2.8 29 157-186 4-32 (113)
155 PF12681 Glyoxalase_2: Glyoxal 32.6 35 0.00077 23.4 2.0 21 169-189 7-28 (108)
156 PRK09319 bifunctional 3,4-dihy 32.1 82 0.0018 29.9 4.7 37 152-190 346-382 (555)
157 TIGR03645 glyox_marine lactoyl 30.6 56 0.0012 25.1 3.0 27 156-183 4-31 (162)
158 PF12261 T_hemolysin: Thermost 29.8 1.7E+02 0.0038 23.4 5.7 50 137-189 97-146 (179)
159 cd07265 2_3_CTD_N N-terminal d 29.6 73 0.0016 22.6 3.3 31 156-187 4-35 (122)
160 PRK08815 GTP cyclohydrolase; P 28.1 1E+02 0.0022 27.7 4.5 48 133-189 296-343 (375)
161 KOG4387|consensus 28.1 3.2E+02 0.0069 22.0 7.5 64 143-210 119-187 (191)
162 cd08358 Glo_EDI_BRP_like_21 Th 28.1 94 0.002 23.2 3.7 25 159-184 5-30 (127)
163 cd08352 Glo_EDI_BRP_like_1 Thi 27.8 97 0.0021 21.5 3.7 29 156-185 3-32 (125)
164 PRK09311 bifunctional 3,4-dihy 27.3 93 0.002 28.3 4.2 36 153-190 343-378 (402)
165 PF08901 DUF1847: Protein of u 26.9 81 0.0018 24.7 3.2 51 135-185 32-87 (157)
166 PF04339 DUF482: Protein of un 26.5 4.8E+02 0.01 23.4 8.5 59 127-187 104-162 (370)
167 cd07249 MMCE Methylmalonyl-CoA 26.3 83 0.0018 22.1 3.2 30 158-188 2-32 (128)
168 KOG1472|consensus 26.3 17 0.00037 35.3 -0.8 74 107-186 431-506 (720)
169 TIGR00505 ribA GTP cyclohydrol 25.7 1.5E+02 0.0032 23.8 4.7 47 132-187 121-167 (191)
170 PRK00393 ribA GTP cyclohydrola 25.7 1.4E+02 0.003 24.1 4.6 49 131-188 123-171 (197)
171 PLN02831 Bifunctional GTP cycl 25.4 1.1E+02 0.0023 28.3 4.2 48 134-190 365-412 (450)
172 PRK10291 glyoxalase I; Provisi 25.2 1E+02 0.0023 22.1 3.5 18 169-186 8-26 (129)
173 PF07395 Mig-14: Mig-14; Inte 25.2 3.4E+02 0.0073 23.2 6.9 98 47-157 129-238 (264)
174 PF02799 NMT_C: Myristoyl-CoA: 24.9 3.8E+02 0.0081 21.7 8.3 121 52-182 33-162 (190)
175 PF13530 SCP2_2: Sterol carrie 24.7 1.7E+02 0.0037 23.7 5.0 65 92-164 22-88 (218)
176 cd07263 Glo_EDI_BRP_like_16 Th 24.7 1.1E+02 0.0025 20.9 3.6 20 168-187 9-29 (119)
177 cd07266 HPCD_N_class_II N-term 24.3 1.1E+02 0.0023 21.5 3.4 30 156-186 4-34 (121)
178 cd07255 Glo_EDI_BRP_like_12 Th 23.7 1.2E+02 0.0025 21.4 3.5 30 157-187 3-33 (125)
179 COG0807 RibA GTP cyclohydrolas 23.4 1.2E+02 0.0026 24.6 3.8 54 128-190 119-172 (193)
180 cd08355 Glo_EDI_BRP_like_14 Th 23.2 1.1E+02 0.0025 21.5 3.4 21 167-187 9-30 (122)
181 cd03173 DUF619-like DUF619 dom 23.2 2.9E+02 0.0062 19.8 8.4 49 121-175 31-79 (98)
182 cd07240 ED_TypeI_classII_N N-t 22.9 1.3E+02 0.0027 20.8 3.5 30 157-187 3-33 (117)
183 PRK11478 putative lyase; Provi 22.7 1E+02 0.0022 21.9 3.1 28 156-184 6-34 (129)
184 cd07252 BphC1-RGP6_N_like N-te 22.5 1.4E+02 0.0031 21.1 3.8 29 156-185 2-31 (120)
185 cd08348 BphC2-C3-RGP6_C_like T 22.2 1.3E+02 0.0029 21.5 3.7 29 158-187 3-32 (134)
186 cd07243 2_3_CTD_C C-terminal d 21.7 1.1E+02 0.0024 22.8 3.2 29 156-185 6-35 (143)
187 cd08362 BphC5-RrK37_N_like N-t 21.5 1.1E+02 0.0024 21.3 3.0 30 156-186 3-33 (120)
188 TIGR02990 ectoine_eutA ectoine 21.5 1.4E+02 0.003 25.0 3.9 42 144-185 107-151 (239)
189 PTZ00129 40S ribosomal protein 21.1 4E+02 0.0087 20.7 7.2 53 140-192 72-139 (149)
190 cd07254 Glo_EDI_BRP_like_20 Th 20.9 1.6E+02 0.0035 20.6 3.8 27 161-187 4-32 (120)
191 cd08349 BLMA_like Bleomycin bi 20.5 83 0.0018 21.5 2.1 19 169-187 10-29 (112)
192 PRK07198 hypothetical protein; 20.3 1.6E+02 0.0036 26.7 4.2 69 133-210 329-398 (418)
193 COG3473 Maleate cis-trans isom 20.3 1.9E+02 0.0041 24.0 4.3 33 153-185 114-149 (238)
194 COG3414 SgaB Phosphotransferas 20.1 1.5E+02 0.0032 21.0 3.3 24 135-158 7-32 (93)
195 PRK14968 putative methyltransf 20.0 2.4E+02 0.0052 21.5 4.9 45 144-188 130-174 (188)
No 1
>KOG2488|consensus
Probab=100.00 E-value=1.4e-39 Score=255.00 Aligned_cols=187 Identities=37% Similarity=0.596 Sum_probs=174.6
Q ss_pred CchHHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccCCceEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy837 2 GGKAERLAVAAAQKIVSEAHKVDNPLEPFTVFKTFKKNGLDLVIEYKKSTDLDAETKKWVWELEEKNMKHSYEVCDIGWD 81 (226)
Q Consensus 2 ~~~~~~~~~~~~~~~v~~an~~~~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~ 81 (226)
+|..++++++..+++|..++++.+|++.++..++.+.++. .++++|||+|++.||.++|.+++|||+
T Consensus 13 qr~~e~~a~~~~~~~v~~~~~lg~p~e~~~~~~~~~~~~~-------------~~~ldw~f~L~k~nm~~~Y~qs~~Gw~ 79 (202)
T KOG2488|consen 13 QRLTERAAMNPMERKVLKLCRLGKPLEIFHMGTKGSNNTD-------------YEDLDWCFSLFKKNMGAMYRQSSWGWD 79 (202)
T ss_pred HHHHHHhhcchHHHHHHHHHhcCCcHHHHHHhhhccccch-------------HHHHHHHHHHHHhhhHHHhhhcccccC
Confidence 4677888999999999999999999999998887777665 289999999999999999999999999
Q ss_pred hhhhhhcccCCCceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEE
Q psy837 82 PQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVV 161 (226)
Q Consensus 82 ~~~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~ 161 (226)
+..+.+||.....+||++.++ .+.+|||++|+|+.+.+.+++|||+++|.+.|||+|||+.||+.++..|....+++|+
T Consensus 80 ~~~K~~El~~~~~~Yi~a~~~-~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVm 158 (202)
T KOG2488|consen 80 DNSKAKELRNRKLRYICAWNN-KSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVM 158 (202)
T ss_pred chhHHHHHhhccceEEEEEcC-CCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhhe
Confidence 999999999999999999988 5599999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHCCCeeeccCCCCCCCCCCcccEEEEeeeC
Q psy837 162 LTTFKHNPDGLNFFYSLNYSVDDTSPEDDNGSSESFCYFILSKKN 206 (226)
Q Consensus 162 l~v~~~N~~A~~FY~k~GF~~~~~~p~~~~~~~~~~~y~il~k~l 206 (226)
|||++.|.+|++||+++||..++.+|.+. ...+|.|+++..
T Consensus 159 LTVf~~N~~al~Fy~~~gf~~~~~sp~~~----s~~~~~~~s~~~ 199 (202)
T KOG2488|consen 159 LTVFSENIRALGFYHRLGFVVDEESPCDT----SGEDYFIKSKET 199 (202)
T ss_pred eeeecccchhHHHHHHcCcccCCCCCccc----cchhhhcccccc
Confidence 99999999999999999999999999886 566888888764
No 2
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.75 E-value=8.9e-18 Score=128.89 Aligned_cols=126 Identities=13% Similarity=0.075 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhcCCCCCh-hhh-hhcccCCCceEEEEEECCCCCeEEEEEEEEeec--CCcceEEEEE
Q psy837 53 LDAETKKWVWELEEKNMKHSYEVCDIGWDP-QGK-HSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVD--FGEPVLYCYE 128 (226)
Q Consensus 53 ~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~-~~~-~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~--~~~~~~yi~~ 128 (226)
++++|++.+.+++....... +.... ... ...+..+...++++..+ +++||++.+..... ......+|..
T Consensus 9 a~~~D~~~l~~l~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~v~~~~--~~ivG~~~~~~~~~~~~~~~~~~i~~ 81 (144)
T PRK10146 9 ATQYDTDAVYALICELKQAE-----FDHQAFRVGFNANLRDPNMRYHLALLD--GEVVGMIGLHLQFHLHHVNWIGEIQE 81 (144)
T ss_pred CcHhhHHHHHHHHHHHhccc-----CCHHHHHHHHHHHhcCCCceEEEEEEC--CEEEEEEEEEecccccccchhheehe
Confidence 45788888888876533221 11111 111 12233445556666665 89999998874321 1222467889
Q ss_pred EEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeecc
Q psy837 129 LQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDT 185 (226)
Q Consensus 129 l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~ 185 (226)
|+|+|++||+|+|+.||+.++..|++.|++.+.|.+...|.+|++||+++||+..+.
T Consensus 82 l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~~ 138 (144)
T PRK10146 82 LVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSHF 138 (144)
T ss_pred eEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHHcCCchhhh
Confidence 999999999999999999999999999999999999999999999999999987643
No 3
>KOG3139|consensus
Probab=99.72 E-value=2.4e-16 Score=121.43 Aligned_cols=133 Identities=17% Similarity=0.163 Sum_probs=105.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcccCCCceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEE
Q psy837 50 STDLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYEL 129 (226)
Q Consensus 50 ~~~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l 129 (226)
..-.....++.|..|+..++.+.|.. .....+...+..+.++..+.++..||.+.+......+...+||..+
T Consensus 19 ~~~~~~~~l~~im~Li~k~lsepyS~--------~tyrYf~~~wp~~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mL 90 (165)
T KOG3139|consen 19 SLYPAEEYLADIMRLIDKDLSEPYSI--------YTYRYFVPNWPCFCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAML 90 (165)
T ss_pred ecchHHHHHHHHHHHHhhhcCchhHH--------HHHHhcccCCceEEEEEEcCCCceEEEEEEeccccCCcceEEEEEE
Confidence 33445667778899988887777631 2234445556556666655233369999888665555568999999
Q ss_pred EEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCC
Q psy837 130 QLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDD 190 (226)
Q Consensus 130 ~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~ 190 (226)
.|+++|||+|||+.|++.++..++..|++.|.|++...|.+|++||+++||+.+..+..++
T Consensus 91 aV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r~~~YY 151 (165)
T KOG3139|consen 91 AVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYESLGFKRDKRLFRYY 151 (165)
T ss_pred EechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHhcCceEecceeEEE
Confidence 9999999999999999999999999999999999999999999999999999998887665
No 4
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.72 E-value=2e-16 Score=123.46 Aligned_cols=106 Identities=13% Similarity=0.204 Sum_probs=83.1
Q ss_pred EEEEEECCCCCeEEEEEEEEeec-CCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHh-CCCcEEEEEEcCCCHHHHH
Q psy837 96 YLVAKNGSSSTPVAFSHFRFDVD-FGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFK-NNMSKVVLTTFKHNPDGLN 173 (226)
Q Consensus 96 ~~~~~~~~~g~ivGf~~~~~~~~-~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~-~g~~~i~l~v~~~N~~A~~ 173 (226)
.+++..+ |++||++.+..... ....... ..++|+|++||+|+|+.||+.+..+++. .+++++.+.|...|.+|++
T Consensus 53 ~~v~~~~--~~~vG~~~~~~~~~~~~~~~~~-~~~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~ 129 (162)
T PRK10140 53 QLVACID--GDVVGHLTIDVQQRPRRSHVAD-FGICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIK 129 (162)
T ss_pred EEEEEEC--CEEEEEEEEecccccccceEEE-EEEEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHH
Confidence 3444444 89999998874321 1121222 3589999999999999999999999988 6999999999999999999
Q ss_pred HHHHCCCeeeccCCCCCCCCCCcccEEEEee
Q psy837 174 FFYSLNYSVDDTSPEDDNGSSESFCYFILSK 204 (226)
Q Consensus 174 FY~k~GF~~~~~~p~~~~~~~~~~~y~il~k 204 (226)
||+|+||+..+..+......+...|.++|+|
T Consensus 130 ~y~k~GF~~~g~~~~~~~~~~~~~d~~~~~~ 160 (162)
T PRK10140 130 VYKKYGFEIEGTGKKYALRNGEYVDAYYMAR 160 (162)
T ss_pred HHHHCCCEEEeecccceeeCCeEEEEEEEEe
Confidence 9999999999998876533455567777766
No 5
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.72 E-value=1.6e-16 Score=135.10 Aligned_cols=151 Identities=13% Similarity=0.078 Sum_probs=114.4
Q ss_pred EEEeeCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcccCCCceEEEEEECCCCCeEEEEEEEEeecCCcceE
Q psy837 45 IEYKKSTDLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVL 124 (226)
Q Consensus 45 i~~~~~~~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~ 124 (226)
+.++++ .++|++.+..|+..... ...+.|.......+...+...++++..+ |++||++.+... .....+
T Consensus 116 ~~IR~a---~~~D~~~l~~L~~~v~~----~~~~~~~~~~~l~~~~~~~~~~~v~~~~--g~iVG~~~~~~~--~~~~~~ 184 (266)
T TIGR03827 116 FTLRIA---TEDDADAMAALYRKVFP----TYPFPIHDPAYLLETMKSNVVYFGVEDG--GKIIALASAEMD--PENGNA 184 (266)
T ss_pred eEEEEC---CHHHHHHHHHHHHHHhc----cCCCCccCHHHHHHHhcCCcEEEEEEEC--CEEEEEEEEecC--CCCCcE
Confidence 455553 46788888888765322 1223343322223333345556666665 899999987532 233468
Q ss_pred EEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCCCCCCCcccEEEEee
Q psy837 125 YCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDDNGSSESFCYFILSK 204 (226)
Q Consensus 125 yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~~~~~~~~~y~il~k 204 (226)
+|..++|+|+|||+|+|+.||+.++..+++.|+..+.+.+...|.+|++||+|+||+..++.++....++...|..|+.|
T Consensus 185 eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~l~n~~~i~G~~~d~~i~~k 264 (266)
T TIGR03827 185 EMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFARLGYAYGGTLVNNTNISGGFESMNIWYK 264 (266)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHHcCCccccEEeecceecCCcccceeeee
Confidence 89999999999999999999999999999999999999999999999999999999999999877655677778888888
Q ss_pred eC
Q psy837 205 KN 206 (226)
Q Consensus 205 ~l 206 (226)
.|
T Consensus 265 ~l 266 (266)
T TIGR03827 265 QL 266 (266)
T ss_pred cC
Confidence 65
No 6
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.72 E-value=7.3e-16 Score=118.95 Aligned_cols=140 Identities=15% Similarity=0.180 Sum_probs=102.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcccCCCceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEE
Q psy837 52 DLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQL 131 (226)
Q Consensus 52 ~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V 131 (226)
.++++|++.++.+... ...++|........ .......+.+..+ +++|||+.+..... ..++..+.|
T Consensus 6 ~~~~~D~~~l~~l~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~vG~~~~~~~~~----~~~~~~i~v 71 (146)
T PRK09491 6 SLTPADLPAAYHIEQR-------AHAFPWSEKTFASN-QGERYLNLKLTVN--GQMAAFAITQVVLD----EATLFNIAV 71 (146)
T ss_pred cCChhhhHHHHHHHHh-------cCCCCCCHHHHHHH-HhcCceEEEEEEC--CeEEEEEEEEeecC----ceEEEEEEE
Confidence 4567788888887532 12345654422221 1222222233444 89999998863221 356788999
Q ss_pred ccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCCC-CCCCcccEEEEeeeC
Q psy837 132 EKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDDN-GSSESFCYFILSKKN 206 (226)
Q Consensus 132 ~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~~-~~~~~~~y~il~k~l 206 (226)
+|++||+|+|+.||+.++..++..+++.+.+.|...|.+|++||+|+||+..+..+.... +++ ..|.++|.++|
T Consensus 72 ~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~~~-~~d~~~~~~~~ 146 (146)
T PRK09491 72 DPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEVTIRRNYYPTADG-REDAIIMALPL 146 (146)
T ss_pred CHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHHcCCEEeeeeeccccCCCC-ceeEEEEeccC
Confidence 999999999999999999999989999999999999999999999999998877766542 344 77888888875
No 7
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.71 E-value=2e-16 Score=110.11 Aligned_cols=78 Identities=21% Similarity=0.320 Sum_probs=72.5
Q ss_pred CCCeEEEEEEEEeecCC--cceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCe
Q psy837 104 SSTPVAFSHFRFDVDFG--EPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYS 181 (226)
Q Consensus 104 ~g~ivGf~~~~~~~~~~--~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~ 181 (226)
+|++||++.+....... ...++|..+.|+|+|||+|+|+.||+.++..+++.|++.|.+.|...|.++++||+|+||+
T Consensus 4 ~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~Gf~ 83 (83)
T PF00583_consen 4 DGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKLGFE 83 (83)
T ss_dssp TTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHTTEE
T ss_pred CCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHcCCC
Confidence 49999999998765542 5699999999999999999999999999999999999999999999999999999999996
No 8
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.70 E-value=3.9e-16 Score=117.08 Aligned_cols=106 Identities=15% Similarity=0.251 Sum_probs=85.5
Q ss_pred CCChhhhhhcccCCCceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCc
Q psy837 79 GWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMS 158 (226)
Q Consensus 79 ~w~~~~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~ 158 (226)
+|........+......++++.++ +++||++.+.... ...++..+.|+|++||+|+|+.||+.++..+...+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~vg~~~~~~~~----~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~ 89 (131)
T TIGR01575 16 PWTEAQFAEELANYHLCYLLARIG--GKVVGYAGVQIVL----DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVN 89 (131)
T ss_pred CCCHHHHHHHhcCCCceEEEEecC--CeEEEEEEEEecC----CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCC
Confidence 455554444444444445555544 8999999976432 2457889999999999999999999999999999999
Q ss_pred EEEEEEcCCCHHHHHHHHHCCCeeeccCCCCC
Q psy837 159 KVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDD 190 (226)
Q Consensus 159 ~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~ 190 (226)
++.+.|...|.++++||+++||+..+..+...
T Consensus 90 ~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~ 121 (131)
T TIGR01575 90 EIFLEVRVSNIAAQALYKKLGFNEIAIRRNYY 121 (131)
T ss_pred eEEEEEecccHHHHHHHHHcCCCccccccccc
Confidence 99999999999999999999999998888755
No 9
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=8.4e-16 Score=121.19 Aligned_cols=163 Identities=13% Similarity=0.080 Sum_probs=117.6
Q ss_pred EEeeCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcccCCCceEEEEEECCCCCeEEEEEEEEeec-CCcceE
Q psy837 46 EYKKSTDLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVD-FGEPVL 124 (226)
Q Consensus 46 ~~~~~~~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~-~~~~~~ 124 (226)
.++.+...+-+.+-.||+-...|..+.|+..+.++.....+..-......++++....+|+++|++.+..-.+ ..-..+
T Consensus 3 ~ir~~~~~Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~t 82 (169)
T COG1247 3 EIRPATAADLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRHT 82 (169)
T ss_pred EEecChHHhHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccceE
Confidence 3444444444445555555555555566544444444333333333333345544432599999998873322 233456
Q ss_pred EEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCCCCCCCcccEEEEee
Q psy837 125 YCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDDNGSSESFCYFILSK 204 (226)
Q Consensus 125 yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~~~~~~~~~y~il~k 204 (226)
.-..|+|+|++||+|+|++||+.+...+...|+..+...+...|.++++|++++||+..+..|..-...+...|-.+|.+
T Consensus 83 ve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~aSi~lh~~~GF~~~G~~~~vg~k~g~wld~~~~~~ 162 (169)
T COG1247 83 VELSIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLASIALHEKLGFEEVGTFPEVGDKFGRWLDLVLMQL 162 (169)
T ss_pred EEEEEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCcHhHHHHHHCCCEEeccccccccccceEEeeeeeeh
Confidence 67789999999999999999999999999999999999999999999999999999999999987444678889999988
Q ss_pred eCCC
Q psy837 205 KNPR 208 (226)
Q Consensus 205 ~l~~ 208 (226)
.|..
T Consensus 163 ~l~~ 166 (169)
T COG1247 163 LLEE 166 (169)
T ss_pred hhcc
Confidence 8754
No 10
>KOG3216|consensus
Probab=99.69 E-value=9.4e-16 Score=116.96 Aligned_cols=90 Identities=16% Similarity=0.217 Sum_probs=78.1
Q ss_pred EEEEEECCCCCeEEEEEEEEeec--CCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHH
Q psy837 96 YLVAKNGSSSTPVAFSHFRFDVD--FGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLN 173 (226)
Q Consensus 96 ~~~~~~~~~g~ivGf~~~~~~~~--~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~ 173 (226)
+++..+.+++.++||++|-+.+. .+...+||.+|+|.|+|||+|+|+.|++.+.+.|.+.|+.++.+.|...|++|+.
T Consensus 55 ~v~~ie~~~~~~aGf~~yf~~ystW~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~ 134 (163)
T KOG3216|consen 55 LVAAIETSGEVVAGFALYFNNYSTWLGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAIL 134 (163)
T ss_pred EEEEEecCCCceeEEeeeecccccccccceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHH
Confidence 33333333578999999887654 4657999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCeeecc
Q psy837 174 FFYSLNYSVDDT 185 (226)
Q Consensus 174 FY~k~GF~~~~~ 185 (226)
||++.|++....
T Consensus 135 lY~k~gaq~l~~ 146 (163)
T KOG3216|consen 135 LYEKVGAQDLKE 146 (163)
T ss_pred HHHHhCccccce
Confidence 999999986543
No 11
>PRK10314 putative acyltransferase; Provisional
Probab=99.67 E-value=2.3e-15 Score=117.87 Aligned_cols=147 Identities=9% Similarity=0.028 Sum_probs=101.6
Q ss_pred EEEEeeCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcccCCCceEEEEEECCCCCeEEEEEEEEeecCCcce
Q psy837 44 VIEYKKSTDLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPV 123 (226)
Q Consensus 44 ~i~~~~~~~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~ 123 (226)
.+.+.+..+++.+++..++.+-..-+-. ..+....+.......+.+.++++.++ +++||++.+.... +....
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~lR~~VF~~-----eq~~~~~e~D~~d~~~~~~h~~~~~~--~~~vg~~r~~~~~-~~~~~ 74 (153)
T PRK10314 3 EWQDLHHSELSVSQLYALLQLRCAVFVV-----EQNCPYQDIDGDDLTGDNRHILGWKN--DELVAYARILKSD-DDLEP 74 (153)
T ss_pred eeEecchhhCCHHHHHHHHHHHHHHhhh-----hcCCCccccCCCCCCCCcEEEEEEEC--CEEEEEEEEecCC-CCCCC
Confidence 4566667899999999999986543321 12222111111111234556677766 8999999987432 22235
Q ss_pred EEEEEEEEccccccCCHHHHHHHHHHHHHHhC-CCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCCCCCCCcccEEEE
Q psy837 124 LYCYELQLEKQVQRKGLGKFMMQVLELMAFKN-NMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDDNGSSESFCYFIL 202 (226)
Q Consensus 124 ~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~-g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~~~~~~~~~y~il 202 (226)
.+|..|+|+|+|||+|+|+.||+.++..++.. +...+.|.+ +..|..||+|+||+..+..-.+ .+...+.|
T Consensus 75 ~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a---~~~a~~fY~k~GF~~~g~~f~~-----~Gi~h~~M 146 (153)
T PRK10314 75 VVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGA---QAHLQNFYQSFGFIPVTEVYEE-----DGIPHIGM 146 (153)
T ss_pred EEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEeh---HHHHHHHHHHCCCEECCCcccc-----CCCCcHhh
Confidence 78999999999999999999999999988764 677888875 6778999999999987653222 23456666
Q ss_pred eeeC
Q psy837 203 SKKN 206 (226)
Q Consensus 203 ~k~l 206 (226)
.|++
T Consensus 147 ~~~~ 150 (153)
T PRK10314 147 AREV 150 (153)
T ss_pred hhhh
Confidence 6654
No 12
>PRK03624 putative acetyltransferase; Provisional
Probab=99.66 E-value=3.1e-15 Score=113.24 Aligned_cols=126 Identities=21% Similarity=0.307 Sum_probs=89.7
Q ss_pred EEEeeCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhh-hhh-cccCCCceEEEEEECCCCCeEEEEEEEEeecCCcc
Q psy837 45 IEYKKSTDLDAETKKWVWELEEKNMKHSYEVCDIGWDPQG-KHS-EMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEP 122 (226)
Q Consensus 45 i~~~~~~~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~-~~~-e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~ 122 (226)
+.++++ +++|++.+..++... . ....|.... ... .+..+...++++..+ +++||++.+... . .
T Consensus 3 ~~ir~~---~~~d~~~i~~l~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~vG~~~~~~~---~-~ 67 (140)
T PRK03624 3 MEIRVF---RQADFEAVIALWERC--D----LTRPWNDPEMDIERKLNHDPSLFLVAEVG--GEVVGTVMGGYD---G-H 67 (140)
T ss_pred eEEEEc---ccccHHHHHHHHHhc--C----CCcchhhHHHHHHHHhcCCCceEEEEEcC--CcEEEEEEeecc---C-C
Confidence 444444 345677777766443 1 111343221 112 222334455555554 899999987632 2 2
Q ss_pred eEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeecc
Q psy837 123 VLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDT 185 (226)
Q Consensus 123 ~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~ 185 (226)
..+++.+.|+|+|||+|+|+.||+.++..+++.+++.+.+.|...|.++++||+|+||+..+.
T Consensus 68 ~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~ 130 (140)
T PRK03624 68 RGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEALGYEEQDR 130 (140)
T ss_pred CceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHcCCccccE
Confidence 356788999999999999999999999999999999999999999999999999999997654
No 13
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.66 E-value=2.9e-15 Score=117.65 Aligned_cols=126 Identities=15% Similarity=0.144 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcc-cCCCceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEE
Q psy837 52 DLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEM-FDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQ 130 (226)
Q Consensus 52 ~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~-~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~ 130 (226)
.++.+|++.+.+|....- ...+......... .......+++..+ ++++|||+.+... +.....++++.|.
T Consensus 3 ~~~~~D~~~i~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~ivG~~~~~~~-~~~~~~~~i~~l~ 73 (157)
T TIGR02406 3 PPRIEDGAGIWELVKDCP-------PLDLNSSYAYLLLCTDFADTSIVAESE-GGEIVGFVSGYLR-PDRPDVLFVWQVA 73 (157)
T ss_pred CCccccHHHHHHHHHhCC-------CCCcccceehhhhhhhcCCcEEEEEcC-CCeEEEEEEEEec-CCCCCeEEEEEEE
Confidence 456678899999886531 1111111111111 1112334455534 4799999876432 2334468899999
Q ss_pred EccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccC
Q psy837 131 LEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTS 186 (226)
Q Consensus 131 V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~ 186 (226)
|+|++||+|+|+.|++.++..++..++.+|.+.|...|.+|++||+|+||+....-
T Consensus 74 V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~k~G~~~~~~~ 129 (157)
T TIGR02406 74 VDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFKALARRRGVHL 129 (157)
T ss_pred EChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHHHhCcccCCCe
Confidence 99999999999999999999999999999999999999999999999999865443
No 14
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.66 E-value=3.1e-15 Score=121.04 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=70.2
Q ss_pred CCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeee
Q psy837 104 SSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVD 183 (226)
Q Consensus 104 ~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~ 183 (226)
+|++||++.+... ..+..++..++|+|++||+|+|+.|++.++.+|++.|+.+|.+.|...|.+|++||+|+||+..
T Consensus 107 ~g~iiG~i~l~~~---~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~ 183 (191)
T TIGR02382 107 SGDPRGYVTLREL---NDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIRSGANIE 183 (191)
T ss_pred CCeEEEEEEEEec---CCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCccc
Confidence 4899999988632 2235678889999999999999999999999999999999999999999999999999999976
Q ss_pred cc
Q psy837 184 DT 185 (226)
Q Consensus 184 ~~ 185 (226)
+.
T Consensus 184 ~~ 185 (191)
T TIGR02382 184 ST 185 (191)
T ss_pred cc
Confidence 54
No 15
>PTZ00330 acetyltransferase; Provisional
Probab=99.65 E-value=2.5e-15 Score=115.59 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=70.0
Q ss_pred EEEEECCCCCeEEEEEEEEeec---CCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHH
Q psy837 97 LVAKNGSSSTPVAFSHFRFDVD---FGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLN 173 (226)
Q Consensus 97 ~~~~~~~~g~ivGf~~~~~~~~---~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~ 173 (226)
+++... +|++||++.+..... .+...++|..++|+|+|||+|+|+.||+.++..+++.++.++.+.+ |.+|++
T Consensus 54 ~~~~~~-~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~---n~~a~~ 129 (147)
T PTZ00330 54 VFVHSP-TQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDC---TEDMVA 129 (147)
T ss_pred EEEEeC-CCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEec---ChHHHH
Confidence 444444 589999998764322 2334678999999999999999999999999999999998888775 899999
Q ss_pred HHHHCCCeeecc
Q psy837 174 FFYSLNYSVDDT 185 (226)
Q Consensus 174 FY~k~GF~~~~~ 185 (226)
||+++||+..+.
T Consensus 130 ~y~k~GF~~~~~ 141 (147)
T PTZ00330 130 FYKKLGFRACER 141 (147)
T ss_pred HHHHCCCEEece
Confidence 999999997753
No 16
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.63 E-value=1.2e-14 Score=117.68 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=74.9
Q ss_pred eEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHH
Q psy837 95 CYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNF 174 (226)
Q Consensus 95 ~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~F 174 (226)
.++++.++ ++++||++.+... .....+|..++|+|++||+|+|+.||+.++.++++.|++++.+.|...|.+|++|
T Consensus 102 ~~~v~~~~-~g~~vG~~~l~~~---~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~ 177 (194)
T PRK10975 102 QCLLLRDA-SGQIQGFVTLREL---NDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRL 177 (194)
T ss_pred cEEEEEcC-CCCEEEEEEEEec---CCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHH
Confidence 34455544 5899999988632 2235788889999999999999999999999999999999999999999999999
Q ss_pred HHHCCCeeeccC
Q psy837 175 FYSLNYSVDDTS 186 (226)
Q Consensus 175 Y~k~GF~~~~~~ 186 (226)
|+|+||+..++.
T Consensus 178 yek~Gf~~~~~~ 189 (194)
T PRK10975 178 YIRSGANIESTA 189 (194)
T ss_pred HHHCCCeEeEEE
Confidence 999999987653
No 17
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.63 E-value=1.6e-14 Score=106.68 Aligned_cols=111 Identities=15% Similarity=0.229 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcC------CCCChhhhhhcccCCCceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEE
Q psy837 57 TKKWVWELEEKNMKHSYEVCD------IGWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQ 130 (226)
Q Consensus 57 ~l~~i~~l~~~~~~~~y~~~~------~~w~~~~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~ 130 (226)
|++.|..|+.......+.... |.+........+..+...++++.++ +++|||+.+. .+ ..|..++
T Consensus 1 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~ivG~~~~~---~~----~~i~~l~ 71 (117)
T PF13673_consen 1 DIPAIAELYREAWQENYWDYGPEQIDAWRYSPEDLEEYLEEGSHTIFVAEEG--GEIVGFAWLE---PD----GEISHLY 71 (117)
T ss_dssp GHHHHHHHHHHHHHHHTTTTSHHHHHHHHSSHHHHHHHHCTCCCEEEEEEET--TEEEEEEEEE---TC----EEEEEEE
T ss_pred CHHHHHHHHHHHHHHhccCCCHHHHHHHhcCHHHHHHHHHhcCCEEEEEEEC--CEEEEEEEEc---CC----CeEEEEE
Confidence 566777777665555441111 0122222222333334456666666 8999999886 22 2278899
Q ss_pred EccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCC
Q psy837 131 LEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNY 180 (226)
Q Consensus 131 V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF 180 (226)
|+|+|||+|+|+.||+.++..++. +++.+.+. .|..|.+||+++||
T Consensus 72 v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~---~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 72 VLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVE---ANERARRFYRKLGF 117 (117)
T ss_dssp E-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEE---C-HHHHHHHHHTT-
T ss_pred EChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEE---eCHHHHHHHHhCCC
Confidence 999999999999999999999977 88877776 89999999999998
No 18
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.61 E-value=2.6e-14 Score=132.71 Aligned_cols=132 Identities=11% Similarity=0.070 Sum_probs=97.4
Q ss_pred EEEeeCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcccCCCceEEEEEECCCCCeEEEEEEEEe---ecCCc
Q psy837 45 IEYKKSTDLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFD---VDFGE 121 (226)
Q Consensus 45 i~~~~~~~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~---~~~~~ 121 (226)
+.+++.. +++|++.+..|+... ....|+.......+..+...++++.++.+|++|||+.+... ..+..
T Consensus 83 ~~IR~~~--~~~D~~~I~~L~~~~-------~~~p~~~~~~~~~~~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~ 153 (547)
T TIGR03103 83 FTVRRLR--GPADVDAINRLYAAR-------GMVPVRVDFVLDHRHSRAITYLVAEDEASGAIIGTVMGVDHRKAFNDPE 153 (547)
T ss_pred cEEEeCC--ChhHHHHHHHHHHhc-------CCCCCCHHHHHHHhcCCCceEEEEEECCCCeEEEEEEEEeccccccCCC
Confidence 5566542 456788888877541 11234444443444445566677765325899999975321 12333
Q ss_pred ceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeecc
Q psy837 122 PVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDT 185 (226)
Q Consensus 122 ~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~ 185 (226)
...++..|+|+|+|||+|+|+.||+.+++.+++.|+.++.|.|...|.+|++||+|+||+....
T Consensus 154 ~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~ 217 (547)
T TIGR03103 154 HGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNEQAIALYEKLGFRRIPV 217 (547)
T ss_pred CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCHHHHHHHHHCCCEEeeE
Confidence 4578899999999999999999999999999999999999999999999999999999986644
No 19
>PRK10514 putative acetyltransferase; Provisional
Probab=99.59 E-value=4.2e-14 Score=108.67 Aligned_cols=123 Identities=15% Similarity=0.216 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcc--cCCCceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEE
Q psy837 53 LDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEM--FDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQ 130 (226)
Q Consensus 53 ~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~--~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~ 130 (226)
++++|.+.+++++............ .++.......+ ..+...++++..+ ++++||++.+. + .++..+.
T Consensus 7 ~~~~D~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iG~~~~~---~-----~~~~~~~ 76 (145)
T PRK10514 7 SRHEEGERLVAIWRRSVDATHDFLS-AEDRAEIEELVRSFLPEAPLWVAVDE-RDQPVGFMLLS---G-----GHMEALF 76 (145)
T ss_pred cchhhHHHHHHHHHHHHHHhCcccC-chhHHHHHHHHHHHhccCceEEEEec-CCcEEEEEEEe---c-----CcEeEEE
Confidence 5577888888887765432210001 11221111111 1122333444433 48999999875 1 2355789
Q ss_pred EccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCC
Q psy837 131 LEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDD 190 (226)
Q Consensus 131 V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~ 190 (226)
|+|++||+|+|+.||+.+...+ +++.+.|...|.+|++||+|+||+..+..+...
T Consensus 77 v~p~~rgkGig~~Ll~~~~~~~-----~~i~~~v~~~N~~a~~~yek~Gf~~~~~~~~~~ 131 (145)
T PRK10514 77 VDPDVRGCGVGRMLVEHALSLH-----PELTTDVNEQNEQAVGFYKKMGFKVTGRSEVDD 131 (145)
T ss_pred ECHHhccCCHHHHHHHHHHHhc-----cccEEEeecCCHHHHHHHHHCCCEEecccccCC
Confidence 9999999999999999998764 457889999999999999999999998887554
No 20
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.59 E-value=2.1e-14 Score=113.71 Aligned_cols=112 Identities=16% Similarity=0.243 Sum_probs=88.9
Q ss_pred CCChhhhhhcccCCCceEEEEEECC-CC----CeEEEEEEEEeecCC--cceEEEEEEEEccccccCCHHHHHHHHHHHH
Q psy837 79 GWDPQGKHSEMFDDRACYLVAKNGS-SS----TPVAFSHFRFDVDFG--EPVLYCYELQLEKQVQRKGLGKFMMQVLELM 151 (226)
Q Consensus 79 ~w~~~~~~~e~~~~~~~~~~~~~~~-~g----~ivGf~~~~~~~~~~--~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~ 151 (226)
+|........+......++++..+. ++ +++||+.+....... ....+|..|.|+|+|||+|||+.||+.++..
T Consensus 40 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~ 119 (177)
T COG0456 40 PWSREYFEKDLTQAPELLLVAETGGLDGLLDGKVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALER 119 (177)
T ss_pred cchHHHHHHHHhhCcceeEEEEecccCCCcccceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHH
Confidence 4666666666666666556665420 12 599999886332221 1268899999999999999999999999999
Q ss_pred HHhCCC-cEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCC
Q psy837 152 AFKNNM-SKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDD 190 (226)
Q Consensus 152 a~~~g~-~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~ 190 (226)
+...+. ..+.|.|..+|.+|++||+++||+.....+.++
T Consensus 120 ~~~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~~~yy 159 (177)
T COG0456 120 LRERGLADKIVLEVRESNEAAIGLYRKLGFEVVKIRKNYY 159 (177)
T ss_pred HHhcCCCceEEEEEecCChHHHHHHHHcCCEEEeeehhhc
Confidence 998886 899999999999999999999999998888766
No 21
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.59 E-value=1.5e-14 Score=112.30 Aligned_cols=131 Identities=12% Similarity=0.181 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhcCCCCChhh----hh----hcc-cCCCceEEEEEECCCCCeEEEEEEEEeecCCcce
Q psy837 53 LDAETKKWVWELEEKNMKHSYEVCDIGWDPQG----KH----SEM-FDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPV 123 (226)
Q Consensus 53 ~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~----~~----~e~-~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~ 123 (226)
+.++|++.+..++... ... ..+.|.... .. ..+ ..+....+++... +|++||++.+....+ ....
T Consensus 4 ~~~~D~~~i~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~g~iiG~~~~~~~~~-~~~~ 77 (155)
T PF13420_consen 4 ATEEDLEEILKLYNEP-RHE---YFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEE-DGKIIGYVSLRDIDP-YNHT 77 (155)
T ss_dssp --GGGHHHHHHHHHHH-HHH---TSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEEC-TTEEEEEEEEEESSS-GTTE
T ss_pred CcHHHHHHHHHHHhhh-hhc---ceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEc-CCcEEEEEEEEeeec-cCCE
Confidence 4467888888887553 211 234443211 11 111 1233445555553 599999999984333 3335
Q ss_pred EEEEEEEEccccccCCHHHHHHHHHHHHH-HhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCC
Q psy837 124 LYCYELQLEKQVQRKGLGKFMMQVLELMA-FKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDD 190 (226)
Q Consensus 124 ~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a-~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~ 190 (226)
+++. +.|.+++|++|+|+.|+..++.+| .+.|+++|.+.|...|.+|++||+++||+..+..+...
T Consensus 78 ~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~~~~ 144 (155)
T PF13420_consen 78 AELS-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGELKDHI 144 (155)
T ss_dssp EEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEEe-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEEecEE
Confidence 5554 888899999999999999999999 88999999999999999999999999999999988764
No 22
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.56 E-value=3.6e-13 Score=108.82 Aligned_cols=108 Identities=11% Similarity=0.053 Sum_probs=82.5
Q ss_pred EEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHh-CCCcEEEEEEcCCCHHHHHHH
Q psy837 97 LVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFK-NNMSKVVLTTFKHNPDGLNFF 175 (226)
Q Consensus 97 ~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~-~g~~~i~l~v~~~N~~A~~FY 175 (226)
+++....++++||++.+..........+++ .+.|.|++||+|+|+.+++.+..++.. .|+++|.+.|...|.+|++||
T Consensus 78 ~~i~~~~~~~~iG~i~l~~~~~~~~~~~ei-g~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ 156 (194)
T PRK10809 78 FALLDPDEKEIIGVANFSNVVRGSFHACYL-GYSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLL 156 (194)
T ss_pred EEEEECCCCeEEEEEEEEeecCCCeeeEEE-EEEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHH
Confidence 344332257899999986432212123333 467899999999999999999999987 699999999999999999999
Q ss_pred HHCCCeeeccCCCCCCCCCCcccEEEEeee
Q psy837 176 YSLNYSVDDTSPEDDNGSSESFCYFILSKK 205 (226)
Q Consensus 176 ~k~GF~~~~~~p~~~~~~~~~~~y~il~k~ 205 (226)
+|+||+..+..+.....++...|.+++++.
T Consensus 157 ek~Gf~~~g~~~~~~~~~g~~~d~~~~~~~ 186 (194)
T PRK10809 157 ARLGFEKEGYAKDYLLIDGQWRDHVLTALT 186 (194)
T ss_pred HHCCCcEEeeeccccccCCeEEEEEEeeee
Confidence 999999888777654334555677777664
No 23
>PRK09831 putative acyltransferase; Provisional
Probab=99.56 E-value=1e-13 Score=107.34 Aligned_cols=132 Identities=15% Similarity=0.189 Sum_probs=88.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCC------CCCh--hhhhhcccCCCceEEEEEECCCCCeEEEEEEEEeecCCcce
Q psy837 52 DLDAETKKWVWELEEKNMKHSYEVCDI------GWDP--QGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPV 123 (226)
Q Consensus 52 ~~~~~~l~~i~~l~~~~~~~~y~~~~~------~w~~--~~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~ 123 (226)
.++++|++.+.++........+. ..+ .|.. ......... ...++++..+ |+++||+.+. .
T Consensus 5 ~a~~~D~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~--~~iiG~~~~~--------~ 72 (147)
T PRK09831 5 NYQPGDFQQLCAIFIRAVTMTAS-QHYSPQQIAAWAQIDESRWKEKLA-KSQVRVAVIN--AQPVGFITCI--------E 72 (147)
T ss_pred cCChhhHHHHHHHHHHHHHHhhh-hcCCHHHHHhccCCCHHHHHHHHh-cCceEEEEEC--CEEEEEEEeh--------h
Confidence 44567777788777665544331 111 1221 001111112 3446666665 8999998875 1
Q ss_pred EEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCCCCCCCcccEEEEe
Q psy837 124 LYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDDNGSSESFCYFILS 203 (226)
Q Consensus 124 ~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~~~~~~~~~y~il~ 203 (226)
.++..++|+|++||+|+|+.||+.++..+.. ++|.. |..|++||+|+||+..+..+... .+...+-++|.
T Consensus 73 ~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-------l~v~~-~~~a~~~Y~k~Gf~~~g~~~~~~--~g~~~~~~~m~ 142 (147)
T PRK09831 73 HYIDMLFVDPEYTRRGVASALLKPLIKSESE-------LTVDA-SITAKPFFERYGFQTVKQQRVEC--RGEWFINFYMR 142 (147)
T ss_pred ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-------eEeec-chhhHHHHHHCCCEEeeccceEE--CCEEEEeeEEE
Confidence 4677899999999999999999999998764 45543 67899999999999999887433 34556666777
Q ss_pred ee
Q psy837 204 KK 205 (226)
Q Consensus 204 k~ 205 (226)
|.
T Consensus 143 ~~ 144 (147)
T PRK09831 143 YK 144 (147)
T ss_pred ec
Confidence 65
No 24
>PHA01807 hypothetical protein
Probab=99.55 E-value=7.6e-14 Score=109.16 Aligned_cols=125 Identities=10% Similarity=0.015 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhh--hhhc-ccCCCceEEEEEECCCCCeEEEEEEEEeecC-CcceEEEE
Q psy837 52 DLDAETKKWVWELEEKNMKHSYEVCDIGWDPQG--KHSE-MFDDRACYLVAKNGSSSTPVAFSHFRFDVDF-GEPVLYCY 127 (226)
Q Consensus 52 ~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~--~~~e-~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~-~~~~~yi~ 127 (226)
.+..+|++....|...-+.+.-+...|.-.++. ...+ ........+++..+ |++|||+.+.+.... ....+.+.
T Consensus 8 ~~~~~d~~~~~~l~l~~l~e~p~~~~w~s~ee~~~~~~~~~~~~~~~~lva~~d--g~lvG~~~l~~~~~~~~~~i~~l~ 85 (153)
T PHA01807 8 HAKAGTPSELQGLCWLAIQELEEFTLFRSKEEALERILDSTESNDRTELLVFRD--GKLAGIAVLVFEDDPHVGPCLGVQ 85 (153)
T ss_pred hhhhCCHHHHHHHHHHHHHhCccCCCCCChHHHHHHHHHHhhCCCceEEEEEEC--CEEEEEEEEEcCCCcceeeeccce
Confidence 344556666666655444433211112111221 1112 23344444555555 899999998754321 11233355
Q ss_pred EEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHC
Q psy837 128 ELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSL 178 (226)
Q Consensus 128 ~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~ 178 (226)
+|+|+|+|||+|+|+.||+.++..|++.|+..|.|+|...|.+|++||++.
T Consensus 86 ~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 86 WQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred eEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHHhc
Confidence 689999999999999999999999999999999999999999999999875
No 25
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.54 E-value=4.3e-13 Score=106.93 Aligned_cols=153 Identities=10% Similarity=0.042 Sum_probs=104.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCCCC---Chhhhhhccc------CC-CceEEEEEECCCCCeEEEEEEEEeecCCc
Q psy837 52 DLDAETKKWVWELEEKNMKHSYEVCDIGW---DPQGKHSEMF------DD-RACYLVAKNGSSSTPVAFSHFRFDVDFGE 121 (226)
Q Consensus 52 ~~~~~~l~~i~~l~~~~~~~~y~~~~~~w---~~~~~~~e~~------~~-~~~~~~~~~~~~g~ivGf~~~~~~~~~~~ 121 (226)
.+.++|.+.++.++..+-........|.- +.......+. .. ...++++..+ |++||++.+....+...
T Consensus 15 ~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~--~~~iG~~~l~~~~~~~~ 92 (179)
T PRK10151 15 AVDESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKE--DELIGVLSFNRIEPLNK 92 (179)
T ss_pred eCCHHHHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEEC--CEEEEEEEEEeeccCCC
Confidence 36688899999987543322221111211 1111111111 11 1223444444 89999998864433222
Q ss_pred ceEEEEEEEEccccccCCHHHHHHHHHHHHHHh-CCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCCCCCCCcccEE
Q psy837 122 PVLYCYELQLEKQVQRKGLGKFMMQVLELMAFK-NNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDDNGSSESFCYF 200 (226)
Q Consensus 122 ~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~-~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~~~~~~~~~y~ 200 (226)
.+.+ .+.|+|+|||+|+|+.+++.+..++.+ .++++|.+.|...|.+|+++|+|+||+..+..+.....++...|..
T Consensus 93 -~~~i-g~~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~~~~~~~~g~~~D~~ 170 (179)
T PRK10151 93 -TAYI-GYWLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFTLEGCLKQAEYLNGAYDDVN 170 (179)
T ss_pred -ceEE-EEEEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeEeccceEECCEEEEEE
Confidence 3444 346899999999999999999999876 6899999999999999999999999999999876654466777888
Q ss_pred EEeeeCCC
Q psy837 201 ILSKKNPR 208 (226)
Q Consensus 201 il~k~l~~ 208 (226)
++++.+.+
T Consensus 171 ~~~~~~~~ 178 (179)
T PRK10151 171 LYARIIDS 178 (179)
T ss_pred EEEEeecC
Confidence 88887543
No 26
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.54 E-value=2.8e-13 Score=108.70 Aligned_cols=151 Identities=13% Similarity=0.124 Sum_probs=100.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhh----hc-ccCCCceEEEEEECCCCCeEEEEEEEEeecCCcceEEEE
Q psy837 53 LDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKH----SE-MFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCY 127 (226)
Q Consensus 53 ~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~----~e-~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~ 127 (226)
++++|++.++.+........+. ..+.+...... .. +..+....+++..+ |++||++.+........ ...+
T Consensus 12 ~~~~D~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--g~~iG~~~~~~~~~~~~-~~~~- 86 (186)
T PRK15130 12 LEREDLRFVHQLDNNASVMRYW-FEEPYEAFVELSDLYDKHIHDQSERRFVVECD--GEKAGLVELVEINHVHR-RAEF- 86 (186)
T ss_pred CCHHHHHHHHHHhcChHHHhhc-CCcccccHHHHHHHHHHhhhcccCcEEEEEEC--CEEEEEEEEEeecCCCC-eEEE-
Confidence 5677889888885432111110 11111111110 11 12233334444444 89999998764322222 2333
Q ss_pred EEEEccccccCCHHHHHHHHHHHHHHh-CCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCCCCCCCcccEEEEeeeC
Q psy837 128 ELQLEKQVQRKGLGKFMMQVLELMAFK-NNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDDNGSSESFCYFILSKKN 206 (226)
Q Consensus 128 ~l~V~~~~rgkGlG~~Lm~~l~~~a~~-~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~~~~~~~~~y~il~k~l 206 (226)
.+.|+|+|||+|+|+.+++.+...+.+ .++++|.+.|...|.+|++||+|+||+..+..+.....++...|.++|+.--
T Consensus 87 ~~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF~~~~~~~~~~~~~g~~~d~~~~~~~~ 166 (186)
T PRK15130 87 QIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFEVEGELIHEFFINGEYRNTIRMCIFQ 166 (186)
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHHCCCEEEEEEeheEEECCEEEEEEEEEeeH
Confidence 589999999999999999999999875 7999999999999999999999999999888776543345556777777654
Q ss_pred CC
Q psy837 207 PR 208 (226)
Q Consensus 207 ~~ 208 (226)
..
T Consensus 167 ~~ 168 (186)
T PRK15130 167 HQ 168 (186)
T ss_pred HH
Confidence 33
No 27
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.54 E-value=3.6e-13 Score=115.43 Aligned_cols=91 Identities=14% Similarity=0.215 Sum_probs=74.5
Q ss_pred eEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHH
Q psy837 95 CYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNF 174 (226)
Q Consensus 95 ~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~F 174 (226)
.++++.++.++++|||+.+..... .....+|+.+.|+|+|||+|||+.||+.++..++..|+..+.+.|...|.+|++|
T Consensus 199 ~~~~a~~~~~~~~vG~~~~~~~~~-~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~ 277 (292)
T TIGR03448 199 GLFLAFDDAPGELLGFHWTKVHPD-EPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRT 277 (292)
T ss_pred ceEEEEECCCCcEEEEEEEEecCC-CCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 355565522489999976553322 2235678888999999999999999999999999999999999999999999999
Q ss_pred HHHCCCeeeccC
Q psy837 175 FYSLNYSVDDTS 186 (226)
Q Consensus 175 Y~k~GF~~~~~~ 186 (226)
|+|+||+.....
T Consensus 278 y~k~GF~~~~~~ 289 (292)
T TIGR03448 278 YEKLGFTVAEVD 289 (292)
T ss_pred HHHcCCEEcccc
Confidence 999999987654
No 28
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.54 E-value=3.3e-13 Score=117.74 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=97.1
Q ss_pred CCceEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcccCCCceEEEEEEC--CCCCeEEEEEEEEe
Q psy837 39 NGLDLVIEYKKSTDLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNG--SSSTPVAFSHFRFD 116 (226)
Q Consensus 39 ~g~~~~i~~~~~~~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~~~~~~~~~~~~~--~~g~ivGf~~~~~~ 116 (226)
.++++++.++.+ +++|++.+..|...+- .|......|.+......+..+ ..+++...+ .++.+||++.+..
T Consensus 181 ~~l~m~~~Ir~a---~~~Dl~ri~~L~~~tn--qfn~~~~~~s~~~i~~~l~~~-~~~~~~~~d~~gd~givG~~~~~~- 253 (320)
T TIGR01686 181 QNLELSLNISKN---DEQNVQRVEELLGRTN--QFNATYTRLNQEDVAQHMQKE-EIVTVSMSDRFGDSGIIGIFVFEK- 253 (320)
T ss_pred HhCCCEEEEEEC---ChhhhHHHHHHHHhHH--hhhccCccCCHHHHHHHhcCC-CEEEEEEEecCCCCceEEEEEEEe-
Confidence 345566777665 4667888888875431 121122346665555544444 333333221 1467999998763
Q ss_pred ecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEc--CCCHHHHHHHHHCCCeee
Q psy837 117 VDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTF--KHNPDGLNFFYSLNYSVD 183 (226)
Q Consensus 117 ~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~--~~N~~A~~FY~k~GF~~~ 183 (226)
. ...++|..++|+|++||+|+|+.||+.++..|++.|+++|.|++. ..|.+|++||+++||+..
T Consensus 254 --~-~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 254 --K-EGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred --c-CCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 2 236789999999999999999999999999999999999999885 489999999999999854
No 29
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.54 E-value=4.8e-13 Score=103.52 Aligned_cols=79 Identities=20% Similarity=0.210 Sum_probs=67.4
Q ss_pred CCCeEEEEEEEEee---cCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCC
Q psy837 104 SSTPVAFSHFRFDV---DFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNY 180 (226)
Q Consensus 104 ~g~ivGf~~~~~~~---~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF 180 (226)
++++||++.+.+.. .......+|..|+|+|+|||+|+|+.||+.++.+|++.|+++|.+.|...|. +||+|+||
T Consensus 63 ~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~---~~y~k~GF 139 (150)
T PLN02706 63 SGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENK---AFYEKCGY 139 (150)
T ss_pred CCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccH---HHHHHCcC
Confidence 48999998875332 2234567889999999999999999999999999999999999999999995 59999999
Q ss_pred eeecc
Q psy837 181 SVDDT 185 (226)
Q Consensus 181 ~~~~~ 185 (226)
+..+.
T Consensus 140 ~~~g~ 144 (150)
T PLN02706 140 VRKEI 144 (150)
T ss_pred EEehh
Confidence 97653
No 30
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.53 E-value=1.9e-13 Score=94.76 Aligned_cols=77 Identities=23% Similarity=0.384 Sum_probs=62.5
Q ss_pred ceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHH
Q psy837 94 ACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLN 173 (226)
Q Consensus 94 ~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~ 173 (226)
..++++.++ +++||++.+. ..+. ..+|..|.|+|++||+|+|+.||+.+...+.. +.+.+.+ |..+..
T Consensus 3 ~~~~~~~~~--~~ivG~~~~~---~~~~-~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~---~~~~~~ 70 (79)
T PF13508_consen 3 ERFFVAEDD--GEIVGFIRLW---PNED-FAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFT---NPAAIK 70 (79)
T ss_dssp EEEEEEEET--TEEEEEEEEE---ETTT-EEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEE---EHHHHH
T ss_pred cEEEEEEEC--CEEEEEEEEE---EcCC-EEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEE---cHHHHH
Confidence 345566665 9999999996 4444 78999999999999999999999999888843 5577665 688999
Q ss_pred HHHHCCCee
Q psy837 174 FFYSLNYSV 182 (226)
Q Consensus 174 FY~k~GF~~ 182 (226)
||+++||+.
T Consensus 71 fY~~~GF~~ 79 (79)
T PF13508_consen 71 FYEKLGFEE 79 (79)
T ss_dssp HHHHTTEEE
T ss_pred HHHHCcCCC
Confidence 999999974
No 31
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.52 E-value=5.1e-13 Score=103.69 Aligned_cols=147 Identities=14% Similarity=0.210 Sum_probs=98.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhc-C-CCCChhhhh-hccc-CCCceEEEEEECCCCCeEEEEEEEEeecCCcceEEE
Q psy837 51 TDLDAETKKWVWELEEKNMKHSYEVC-D-IGWDPQGKH-SEMF-DDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYC 126 (226)
Q Consensus 51 ~~~~~~~l~~i~~l~~~~~~~~y~~~-~-~~w~~~~~~-~e~~-~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi 126 (226)
..++++|++.++.+....-...|... . ..+...... ..+. .+...++++..+ |++||++.+...... .....+
T Consensus 4 r~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~vG~~~~~~~~~~-~~~~~~ 80 (156)
T TIGR03585 4 TPLNSEELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALKQDPNRRYWIVCQE--SRPIGVISFTDINLV-HKSAFW 80 (156)
T ss_pred ccCCHHHHHHHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhhcCCCceEEEEEEC--CEEEEEEEEEecChh-hCeEEE
Confidence 46778899999998654322223111 1 111111111 1222 223345555554 899999998743221 223444
Q ss_pred EEEEEccccccCCHHHHHHHHHHHHHHh-CCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCCCCCCCcccEEEE
Q psy837 127 YELQLEKQVQRKGLGKFMMQVLELMAFK-NNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDDNGSSESFCYFIL 202 (226)
Q Consensus 127 ~~l~V~~~~rgkGlG~~Lm~~l~~~a~~-~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~~~~~~~~~y~il 202 (226)
. +.+.|.+| +|+|+.+|..++.+|.+ .++++|.+.|...|.+|++||+|+||+..+..+.....+|...|-++|
T Consensus 81 g-~~~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~~~~~~~~~g~~~d~~~~ 155 (156)
T TIGR03585 81 G-IYANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREGVFRQGIFKEGEYYDVLLM 155 (156)
T ss_pred E-EEeChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCeEeeeehhheeECCeEEEEEEe
Confidence 3 45899999 99999999999999986 699999999999999999999999999998887654334444555544
No 32
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.52 E-value=2e-13 Score=105.97 Aligned_cols=131 Identities=12% Similarity=0.183 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCh-hhhhhccc-CCCceEEEEEECCCCCeEEEEEEEEeec---CCcceEEEEEE
Q psy837 55 AETKKWVWELEEKNMKHSYEVCDIGWDP-QGKHSEMF-DDRACYLVAKNGSSSTPVAFSHFRFDVD---FGEPVLYCYEL 129 (226)
Q Consensus 55 ~~~l~~i~~l~~~~~~~~y~~~~~~w~~-~~~~~e~~-~~~~~~~~~~~~~~g~ivGf~~~~~~~~---~~~~~~yi~~l 129 (226)
.+|++.|..++.+.-...+-...+.+.. ......+. .+...++++..+ |+++||+.+....+ .......++.+
T Consensus 7 ~~Dl~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~d--g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (152)
T PF13523_consen 7 PDDLPLILQWLNQPHVREFWDQDPSQEWVEEYPEQLEADPGHHPYVAEDD--GEPIGYFEIYWPDEDYDADDGDRGIHRL 84 (152)
T ss_dssp GGGHHHHHHHHTSHHHHCCH-CCCTHHHHHHHHHHHCHTTTEEEEEEEET--TEEEEEEEEEEGGGSS---TTEEEEEEE
T ss_pred HHHHHHHHHHHHhHHHHHHccCCCCHHHHHHHHhhhcccCCceEEEEEEC--CEEEEEEEEecccccccCCCCEEEEeee
Confidence 7899999998876543333222222111 11122332 455566777776 99999997753211 13345667888
Q ss_pred EEccccccCCHHHHHHHHHHHHHHhC-CCcEEEEEEcCCCHHHHHHHHHCCCeeeccCC
Q psy837 130 QLEKQVQRKGLGKFMMQVLELMAFKN-NMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSP 187 (226)
Q Consensus 130 ~V~~~~rgkGlG~~Lm~~l~~~a~~~-g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p 187 (226)
.+++++||+|+|+.+|+.+...+.+. +++.|.+++...|.+|+++|+|+||+.++...
T Consensus 85 ~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~~~ 143 (152)
T PF13523_consen 85 IVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKVGEFE 143 (152)
T ss_dssp ESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEEEEEE
T ss_pred eechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEeeEEE
Confidence 99999999999999999999998875 89999999999999999999999999887764
No 33
>PRK10562 putative acetyltransferase; Provisional
Probab=99.52 E-value=2.5e-13 Score=104.73 Aligned_cols=136 Identities=14% Similarity=0.209 Sum_probs=88.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCC-CCChhhhh-hcccCCCceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEE
Q psy837 52 DLDAETKKWVWELEEKNMKHSYEVCDI-GWDPQGKH-SEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYEL 129 (226)
Q Consensus 52 ~~~~~~l~~i~~l~~~~~~~~y~~~~~-~w~~~~~~-~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l 129 (226)
.++.+|++.++.++.......+....+ .|...... .+...+...++++..+ +++||++.+.. . .++..+
T Consensus 4 ~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~iG~~~~~~---~----~~i~~~ 74 (145)
T PRK10562 4 EYQPSDLPAILQLWLESTIWAHPFIKEQYWRESAPLVRDVYLPAAQTWVWEED--GKLLGFVSVLE---G----RFVGAL 74 (145)
T ss_pred cccchhhHHHHHHHHHhccccCCCCCHHHHHHhHHHhhhhhcCcccEEEEEEC--CEEEEEEEEee---c----cEEEEE
Confidence 456778888888875431111100000 12111111 1111222333444554 78999998852 1 246778
Q ss_pred EEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCCCCCCCcccEEEEeee
Q psy837 130 QLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDDNGSSESFCYFILSKK 205 (226)
Q Consensus 130 ~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~~~~~~~~~y~il~k~ 205 (226)
+|+|+|||+|+|+.||+.++.. +..+.+.|...|.+|++||+|+||+..+...... ...+++||+-.
T Consensus 75 ~v~~~~rg~G~g~~ll~~~~~~-----~~~~~~~v~~~N~~s~~~y~k~Gf~~~~~~~~~~----~~~~~~~~~~~ 141 (145)
T PRK10562 75 FVAPKAVRRGIGKALMQHVQQR-----YPHLSLEVYQKNQRAVNFYHAQGFRIVDSAWQEE----TQHPTWIMSWQ 141 (145)
T ss_pred EECHHHcCCCHHHHHHHHHHhh-----CCeEEEEEEcCChHHHHHHHHCCCEEccccccCC----CCCEEEEEEec
Confidence 9999999999999999988774 4578899999999999999999999987654332 34577777643
No 34
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.52 E-value=3.4e-13 Score=107.22 Aligned_cols=121 Identities=15% Similarity=0.191 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcccCCCceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEEc
Q psy837 53 LDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLE 132 (226)
Q Consensus 53 ~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V~ 132 (226)
++++|.+.+..++...... ...... .......+...++++... +++++|++.+.... .....|..+.|+
T Consensus 11 a~~~D~~~i~~L~~~~~~~-----~~~~~~--~~~~~~~~~~~~~va~~~-~~~iiG~~~~~~~~---~~~~~i~~l~V~ 79 (169)
T PRK07922 11 ARTSDVPAIKRLVDPYAQG-----RILLEK--NLVTLYEAVQEFWVAEHL-DGEVVGCGALHVMW---EDLAEIRTVAVD 79 (169)
T ss_pred CCHhhHHHHHHHHHHHhhc-----Cccccc--hHHHHHhhcCcEEEEEec-CCcEEEEEEEeecC---CCceEEEEEEEC
Confidence 4566777777776542211 010000 011112223345555523 48999999876432 235778899999
Q ss_pred cccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCC
Q psy837 133 KQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPED 189 (226)
Q Consensus 133 ~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~ 189 (226)
|++||+|+|+.||+.++..|++.|++++.+.+. +++||+|+||+..+..+.+
T Consensus 80 p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~-----~~~fY~k~GF~~~~~~~~~ 131 (169)
T PRK07922 80 PAARGRGVGHAIVERLLDVARELGLSRVFVLTF-----EVEFFARHGFVEIDGTPVT 131 (169)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec-----cHHHHHHCCCEECccccCC
Confidence 999999999999999999999999999988764 3789999999998766643
No 35
>PHA00673 acetyltransferase domain containing protein
Probab=99.52 E-value=2.5e-13 Score=105.73 Aligned_cols=132 Identities=11% Similarity=0.018 Sum_probs=93.5
Q ss_pred eeCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCh---hhhhhccc-CCCceEEEEEECCCCCeEEEEEEEEeec---CC
Q psy837 48 KKSTDLDAETKKWVWELEEKNMKHSYEVCDIGWDP---QGKHSEMF-DDRACYLVAKNGSSSTPVAFSHFRFDVD---FG 120 (226)
Q Consensus 48 ~~~~~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~---~~~~~e~~-~~~~~~~~~~~~~~g~ivGf~~~~~~~~---~~ 120 (226)
++..-+..+|++.|..|+.+...... ......+ ......+. ++...++++.++ |++|||+.+.+... .+
T Consensus 7 ~~~~~A~~~D~paI~~LLadd~l~~~--r~d~~~~~~y~~af~ai~~dp~~~llVa~~~--g~vVG~~~l~~~p~l~~~~ 82 (154)
T PHA00673 7 RRVAFAELADAPTFASLCAEYAHESA--NADLAGRAPDHHAYAGMEAAGVAHFLGVFRG--EELVGFACLLVTPVPHFKG 82 (154)
T ss_pred HHHhhccHhhHHHHHHHHHhcccccc--cccccccchhHHHHHHHHhCCCcEEEEEEEC--CEEEEEEEEEEecCCccCC
Confidence 34455678899999999876211111 0111111 01123443 445555555554 89999998876642 34
Q ss_pred cceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeec
Q psy837 121 EPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDD 184 (226)
Q Consensus 121 ~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~ 184 (226)
.+.++|..|+|+|++||+|||+.||++++..|+..|+..+.+..- .+...+.||.++|++...
T Consensus 83 ~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~-p~~~tv~fy~~~g~~~~~ 145 (154)
T PHA00673 83 QLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGP-TEGRLVQLLPAAGYRETN 145 (154)
T ss_pred ccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecC-CCccchHHHHhCCchhhc
Confidence 578899999999999999999999999999999999999999753 345568999999998653
No 36
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.51 E-value=3e-13 Score=115.89 Aligned_cols=121 Identities=16% Similarity=0.109 Sum_probs=88.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcccC---CCceEEEEEECCCCCeEEEEEEEEeecCCcceEEEE
Q psy837 51 TDLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFD---DRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCY 127 (226)
Q Consensus 51 ~~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~~---~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~ 127 (226)
..++++|++.+..|+....... ....|.... ..++.. .....+++.++ +++|||+.+.... ....++.
T Consensus 4 ~~l~~~d~~~v~~L~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~vG~~~~~~~~---~~~~~~~ 74 (292)
T TIGR03448 4 AALDADLRRDVRELLAAATAVD---GVAPVSEQV-LRGLREPGAGHTRHLVAVDS--DPIVGYANLVPAR---GTDPAMA 74 (292)
T ss_pred ccCCHHHHHHHHHHHHHHHhcC---CCCCCCHHH-HhhccccCCCCceEEEEEEC--CEEEEEEEEEcCC---CCcceEE
Confidence 4688999999999987543321 122466543 233322 12345666655 8999999887432 2235688
Q ss_pred EEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeec
Q psy837 128 ELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDD 184 (226)
Q Consensus 128 ~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~ 184 (226)
.|+|+|++||+|||+.||+.++..+. ..+.+.|...|.+|++||+++||+...
T Consensus 75 ~l~V~p~~rg~GiG~~Ll~~~~~~~~----~~~~~~~~~~n~~a~~fy~~~Gf~~~~ 127 (292)
T TIGR03448 75 ELVVHPAHRRRGIGRALIRALLAKGG----GRLRVWAHGDLPAARALASRLGLVPTR 127 (292)
T ss_pred EEEECHhhcCCCHHHHHHHHHHHhcc----CceEEEEcCCCHHHHHHHHHCCCEEcc
Confidence 99999999999999999999988764 457888889999999999999998664
No 37
>PRK07757 acetyltransferase; Provisional
Probab=99.47 E-value=2e-12 Score=100.24 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=66.3
Q ss_pred EEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHH
Q psy837 96 YLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFF 175 (226)
Q Consensus 96 ~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY 175 (226)
++++..+ ++++|++.+... .....+|..+.|+|++||+|+|+.||+.++..|.+.|+..+.+.+. +.+||
T Consensus 43 ~~i~~~~--~~lvG~~~l~~~---~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~-----~~~~Y 112 (152)
T PRK07757 43 FYVAEEE--GEIVGCCALHIL---WEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALTY-----QPEFF 112 (152)
T ss_pred EEEEEEC--CEEEEEEEEEec---cCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC-----cHHHH
Confidence 4555555 899999998742 2335688899999999999999999999999999999998877653 36899
Q ss_pred HHCCCeeecc
Q psy837 176 YSLNYSVDDT 185 (226)
Q Consensus 176 ~k~GF~~~~~ 185 (226)
+|+||+....
T Consensus 113 ~k~GF~~~~~ 122 (152)
T PRK07757 113 EKLGFREVDK 122 (152)
T ss_pred HHCCCEEccc
Confidence 9999998765
No 38
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.42 E-value=2.5e-12 Score=116.77 Aligned_cols=118 Identities=10% Similarity=0.062 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCC--CCChhhhhhcccCCCceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEE
Q psy837 52 DLDAETKKWVWELEEKNMKHSYEVCDI--GWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYEL 129 (226)
Q Consensus 52 ~~~~~~l~~i~~l~~~~~~~~y~~~~~--~w~~~~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l 129 (226)
.+.++|++.|.+++... . ...+ .|... .+......|+++.++ ++++||+.+.... .....+|..|
T Consensus 299 ~at~~D~~~I~~L~~~~----~-~~~~~~~~~~~----~l~~~~~~~~va~~d--g~iVG~~~~~~~~--~~~~~~I~~l 365 (441)
T PRK05279 299 RATIDDVGGILELIRPL----E-EQGILVRRSRE----QLEREIDKFTVIERD--GLIIGCAALYPFP--EEKMGEMACL 365 (441)
T ss_pred eCCHHHHHHHHHHHHHH----H-HcCCccccCHH----HHhcccCcEEEEEEC--CEEEEEEEEEEcC--CCCeEEEEEE
Confidence 45678999999987532 1 1122 23322 222223345666665 8999998776321 2346789999
Q ss_pred EEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccC
Q psy837 130 QLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTS 186 (226)
Q Consensus 130 ~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~ 186 (226)
+|+|+|||+|+|+.||+.++.+|++.|+..+.+. |..|++||+++||+..+..
T Consensus 366 ~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~----~~~a~~fY~k~GF~~~g~~ 418 (441)
T PRK05279 366 AVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVL----TTRTAHWFLERGFVPVDVD 418 (441)
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEe----cchHHHHHHHCcCEECChh
Confidence 9999999999999999999999999999988764 3568999999999988663
No 39
>PLN02825 amino-acid N-acetyltransferase
Probab=99.41 E-value=4e-12 Score=116.55 Aligned_cols=122 Identities=11% Similarity=0.099 Sum_probs=88.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcccCCCceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEE
Q psy837 50 STDLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYEL 129 (226)
Q Consensus 50 ~~~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l 129 (226)
...++.+|++.|.+|+.......+ ...|..+. +......|+++..+ |++|||+.+.... .....+|..|
T Consensus 370 IR~At~eDi~~I~~Li~~lee~g~---lv~rs~e~----le~ei~~f~V~e~D--g~IVG~aal~~~~--~~~~aEI~~l 438 (515)
T PLN02825 370 TRMARVEDLAGIRQIIRPLEESGI---LVRRTDEE----LLRALDSFVVVERE--GSIIACAALFPFF--EEKCGEVAAI 438 (515)
T ss_pred heeCCHHHHHHHHHHHHHHHHcCC---CcCCCHHH----HHhcCCcEEEEEEC--CEEEEEEEEEeec--CCCcEEEEEE
Confidence 446788999999999875322111 11222222 22222346666666 8999999765322 2346788899
Q ss_pred EEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccC
Q psy837 130 QLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTS 186 (226)
Q Consensus 130 ~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~ 186 (226)
+|+|+|||+|+|+.||++++..|++.|++++.+.+ ..+.+||+++||+..+..
T Consensus 439 aV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt----t~a~~fY~k~GF~~~~~~ 491 (515)
T PLN02825 439 AVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT----TRTADWFVRRGFSECSIE 491 (515)
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe----CcHHHHHHHCCCEEeChh
Confidence 99999999999999999999999999999999976 457899999999976553
No 40
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.40 E-value=3.5e-12 Score=120.17 Aligned_cols=124 Identities=15% Similarity=0.096 Sum_probs=86.8
Q ss_pred EEEeeCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcccCCCceEEEEEECCCCCeEEEEEEEEeecCCcceE
Q psy837 45 IEYKKSTDLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVL 124 (226)
Q Consensus 45 i~~~~~~~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~ 124 (226)
+.+++ ++++|++.+.+++..... . ...+.|... ++......++++.++ |++|||+.+... +....
T Consensus 464 m~IR~---a~~~D~~~I~~L~~~~~~-~--~~~~~~~~~----~l~~~~~~~~Va~~~--g~IVG~~~l~~~---~~~~~ 528 (614)
T PRK12308 464 VKVRP---ARLTDIDAIEGMVAYWAG-L--GENLPRSRN----ELVRDIGSFAVAEHH--GEVTGCASLYIY---DSGLA 528 (614)
T ss_pred CEEEE---CCHHHHHHHHHHHHHHHh-h--hcccccCHH----HHhcccCcEEEEEEC--CEEEEEEEEEEc---CCCeE
Confidence 44554 446677777777643211 1 112233322 222233445666665 899999987632 22357
Q ss_pred EEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCC
Q psy837 125 YCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPE 188 (226)
Q Consensus 125 yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~ 188 (226)
+|..|+|+|+|||+|||+.||+.++..+++.|++.+.+.+ .+.+||+|+||+..+....
T Consensus 529 ~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~-----~a~~FYek~GF~~~~~~~~ 587 (614)
T PRK12308 529 EIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLT-----RVPEFFMKQGFSPTSKSLL 587 (614)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEee-----CcHHHHHHCCCEECCcccC
Confidence 8999999999999999999999999999999999998864 2469999999998876653
No 41
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.39 E-value=2.6e-12 Score=96.49 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcccCCCceEEEEEECCCCCeEEEEEEEEe-ec-C--CcceEEEEE
Q psy837 53 LDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFD-VD-F--GEPVLYCYE 128 (226)
Q Consensus 53 ~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~-~~-~--~~~~~yi~~ 128 (226)
++++|.+.+.+|+........... |. ......... ....+++.++ +++||.+.+... .. . ..++.++..
T Consensus 5 ~~~~d~~~i~~l~~~~F~~~~~~~---~~-~~~~~~~~~-~~~~~~~~~~--~~ivg~~~~~~~~~~~~g~~~~~~~i~~ 77 (127)
T PF13527_consen 5 LTESDFEQIIELFNEAFGDSESPP---EI-WEYFRNLYG-PGRCVVAEDD--GKIVGHVGLIPRRLSVGGKKFKAAYIGD 77 (127)
T ss_dssp E-GGGHHHHHHHHHHHTTT-CHHH---HH-HHHHHHHHH-TTEEEEEEET--TEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCCCch---hh-hhhhhcccC-cCcEEEEEEC--CEEEEEEEEEEEEEEECCEEEEEEEEEE
Confidence 457889999998866443222110 00 011112222 3355666666 999999876532 11 2 235899999
Q ss_pred EEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCee
Q psy837 129 LQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSV 182 (226)
Q Consensus 129 l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~ 182 (226)
+.|+|++||+|+|+.||+.+.+.+++.|+.-+.+.. ....||+++||+.
T Consensus 78 v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~-----~~~~~Y~~~G~~~ 126 (127)
T PF13527_consen 78 VAVDPEYRGRGLGRQLMRALLERARERGVPFIFLFP-----SSPPFYRRFGFEY 126 (127)
T ss_dssp EEE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE------SSHHHHHHTTEEE
T ss_pred EEECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec-----CChhhhhcCCCEE
Confidence 999999999999999999999999999998777764 2369999999986
No 42
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.39 E-value=5.5e-12 Score=114.20 Aligned_cols=120 Identities=9% Similarity=0.029 Sum_probs=85.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcccCCCceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEE
Q psy837 52 DLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQL 131 (226)
Q Consensus 52 ~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V 131 (226)
.++++|++.|.+++.. .. ...| ........+..+...++++.++ ++++||+.+.... .....+|..|+|
T Consensus 287 ~at~~Dl~~I~~L~~~----~~-~~~~--~~~~~~~~l~~~~~~~~V~~~d--g~iVG~~~~~~~~--~~~~~~I~~l~V 355 (429)
T TIGR01890 287 QATIDDIGGIAALIRP----LE-EQGI--LVRRSREYLEREISEFSIIEHD--GNIIGCAALYPYA--EEDCGEMACLAV 355 (429)
T ss_pred ECCHHHHHHHHHHHHH----HH-HcCC--chhhhHHHHHhhcCcEEEEEEC--CEEEEEEEEEecC--CCCeEEEEEEEE
Confidence 4578899999998753 12 1222 2111122222233345666555 8999999887432 234678899999
Q ss_pred ccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccC
Q psy837 132 EKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTS 186 (226)
Q Consensus 132 ~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~ 186 (226)
+|+|||+|+|++||++++..|++.|++++.+. ..| +.+||+++||+..+..
T Consensus 356 ~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~--~~~--a~~fY~k~GF~~~g~~ 406 (429)
T TIGR01890 356 SPEYQDGGRGERLLAHIEDRARQMGISRLFVL--TTR--TGHWFRERGFQTASVD 406 (429)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEe--ecc--hHHHHHHCCCEECChh
Confidence 99999999999999999999999999987643 334 5799999999988664
No 43
>PRK13688 hypothetical protein; Provisional
Probab=99.33 E-value=1.5e-11 Score=96.57 Aligned_cols=86 Identities=14% Similarity=0.230 Sum_probs=61.8
Q ss_pred CCceEEEEEECCCCCeEEEEEEEEee-------cCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Q psy837 92 DRACYLVAKNGSSSTPVAFSHFRFDV-------DFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTT 164 (226)
Q Consensus 92 ~~~~~~~~~~~~~g~ivGf~~~~~~~-------~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v 164 (226)
+...++++.++ +++||++.+.... ......++|..|+|+|+|||+|+|+.||+.+.. .++. + .+
T Consensus 43 ~~~~~~~~~~~--~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~----~~~~-~--~~ 113 (156)
T PRK13688 43 SESPFYGIYYG--DSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKS----FQLP-I--KT 113 (156)
T ss_pred CCCCEEEEEEC--CEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHH----hCCe-E--EE
Confidence 34555666666 8999998775321 122346789999999999999999999986543 3432 3 34
Q ss_pred cCCCHHHHHHHHHCCCeeeccCC
Q psy837 165 FKHNPDGLNFFYSLNYSVDDTSP 187 (226)
Q Consensus 165 ~~~N~~A~~FY~k~GF~~~~~~p 187 (226)
...| .|.+||+|+||+..+..+
T Consensus 114 ~~~~-~a~~FY~k~GF~~~~~~~ 135 (156)
T PRK13688 114 IARN-KSKDFWLKLGFTPVEYKN 135 (156)
T ss_pred Eecc-chHHHHHhCCCEEeEEec
Confidence 4445 578999999999887764
No 44
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.30 E-value=8.7e-11 Score=89.33 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=66.1
Q ss_pred EEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHH-HhCCCcEEEEEEcCCCHHHHHH
Q psy837 96 YLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMA-FKNNMSKVVLTTFKHNPDGLNF 174 (226)
Q Consensus 96 ~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a-~~~g~~~i~l~v~~~N~~A~~F 174 (226)
++++....++++||++.+..... ....+.+. +.|.|++||+|+|+.++..+..++ ...++.+|.+.|...|.+|+++
T Consensus 58 ~~~i~~~~~~~~iG~i~~~~~~~-~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~ 135 (142)
T PF13302_consen 58 YFAIEDKDDGEIIGFIGLYNIDK-NNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRL 135 (142)
T ss_dssp EEEEEETTTTEEEEEEEEEEEET-TTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHH
T ss_pred EEEEEeccCCceEEEeeeeeccc-CCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHH
Confidence 34455542467999999853322 23345544 789999999999999999999999 4689999999999999999999
Q ss_pred HHHCCCe
Q psy837 175 FYSLNYS 181 (226)
Q Consensus 175 Y~k~GF~ 181 (226)
++|+||+
T Consensus 136 ~~k~GF~ 142 (142)
T PF13302_consen 136 LEKLGFE 142 (142)
T ss_dssp HHHTT-E
T ss_pred HHHcCCC
Confidence 9999996
No 45
>KOG3396|consensus
Probab=99.26 E-value=4.7e-11 Score=89.56 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=74.8
Q ss_pred cccCCCc-eEEEE-EECCCCCeEEEEEEEEeec---CCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEE
Q psy837 88 EMFDDRA-CYLVA-KNGSSSTPVAFSHFRFDVD---FGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVL 162 (226)
Q Consensus 88 e~~~~~~-~~~~~-~~~~~g~ivGf~~~~~~~~---~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l 162 (226)
.|..... .|+++ ++.+.++++|.+.+..... .....+.|.++.|++++||++||+.|+..+..+|+..|+=++.|
T Consensus 45 ~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~L 124 (150)
T KOG3396|consen 45 AMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIIL 124 (150)
T ss_pred HHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEE
Confidence 3444444 33433 4444688999988765532 34457889999999999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHCCCeeec
Q psy837 163 TTFKHNPDGLNFFYSLNYSVDD 184 (226)
Q Consensus 163 ~v~~~N~~A~~FY~k~GF~~~~ 184 (226)
+|...| +.||+|+||...+
T Consensus 125 dC~~~n---v~FYeKcG~s~~~ 143 (150)
T KOG3396|consen 125 DCDPKN---VKFYEKCGYSNAG 143 (150)
T ss_pred ecchhh---hhHHHHcCccccc
Confidence 998877 6899999998665
No 46
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.25 E-value=5.2e-11 Score=102.63 Aligned_cols=73 Identities=16% Similarity=0.123 Sum_probs=62.9
Q ss_pred CCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeee
Q psy837 104 SSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVD 183 (226)
Q Consensus 104 ~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~ 183 (226)
++++||++.+.. .+|..|+|+|+|||+|+|+.||+.++..+++.|++++.|.+... +..||+|+||+..
T Consensus 14 ~~~iVG~~~l~~--------~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~---~~~fYek~GF~~~ 82 (297)
T cd02169 14 AGELIATGSIAG--------NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPK---NAKFFRGLGFKEL 82 (297)
T ss_pred CCEEEEEEEecc--------CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEccc---HHHHHHHCCCEEe
Confidence 489999988751 24789999999999999999999999999999999999998543 4699999999988
Q ss_pred c-cCC
Q psy837 184 D-TSP 187 (226)
Q Consensus 184 ~-~~p 187 (226)
+ .++
T Consensus 83 ~~~~~ 87 (297)
T cd02169 83 ANASD 87 (297)
T ss_pred cccCC
Confidence 7 444
No 47
>KOG3235|consensus
Probab=99.24 E-value=3.2e-11 Score=92.79 Aligned_cols=107 Identities=18% Similarity=0.224 Sum_probs=84.3
Q ss_pred EEEEECCCCCeEEEEEEEEee--cCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHh-CCCcEEEEEEcCCCHHHHH
Q psy837 97 LVAKNGSSSTPVAFSHFRFDV--DFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFK-NNMSKVVLTTFKHNPDGLN 173 (226)
Q Consensus 97 ~~~~~~~~g~ivGf~~~~~~~--~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~-~g~~~i~l~v~~~N~~A~~ 173 (226)
+++.+. +|+||||+...-.. ++..+.+.|..|.|..+||+.|||+.||........+ .+.+.|.|.|.++|.+|+.
T Consensus 44 yVA~D~-~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~ 122 (193)
T KOG3235|consen 44 YVAEDE-NGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALH 122 (193)
T ss_pred EEEEcC-CCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHH
Confidence 344444 79999999765332 3455689999999999999999999999996655554 5788999999999999999
Q ss_pred HHH-HCCCeeeccCCCCCCCCCCcccEEEEeeeCC
Q psy837 174 FFY-SLNYSVDDTSPEDDNGSSESFCYFILSKKNP 207 (226)
Q Consensus 174 FY~-k~GF~~~~~~p~~~~~~~~~~~y~il~k~l~ 207 (226)
+|+ .+||++.+..|.++ .++-|-+-|+|.|.
T Consensus 123 LY~~tl~F~v~eve~kYY---adGedAyaM~~~L~ 154 (193)
T KOG3235|consen 123 LYKNTLGFVVCEVEPKYY---ADGEDAYAMRKDLS 154 (193)
T ss_pred hhhhccceEEeecccccc---cccHHHHHHHHHHH
Confidence 997 99999999999887 23334445666653
No 48
>KOG3234|consensus
Probab=99.24 E-value=2.4e-11 Score=93.30 Aligned_cols=114 Identities=18% Similarity=0.083 Sum_probs=92.8
Q ss_pred EEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHH
Q psy837 97 LVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFY 176 (226)
Q Consensus 97 ~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~ 176 (226)
+++.+.+++++.||+.-........-.+.+..+.|.|+||+.|+|+.||..++......+.=-+.|-|..+|.-|+.||+
T Consensus 43 ~~~a~~p~~~imgyimgk~Eg~~~~wh~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYk 122 (173)
T KOG3234|consen 43 FIVAEAPTGEIMGYIMGKVEGKDTEWHGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYK 122 (173)
T ss_pred hEeccCCCCceEEEEeeeccccCcceeeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHH
Confidence 34444447899999988755445555778899999999999999999999999999887666788999999999999999
Q ss_pred HCCCeeeccCCCCCCCCCCcccEEEEeeeCCCCCC
Q psy837 177 SLNYSVDDTSPEDDNGSSESFCYFILSKKNPRFKS 211 (226)
Q Consensus 177 k~GF~~~~~~p~~~~~~~~~~~y~il~k~l~~~~~ 211 (226)
++||.+-.+-+.++. .|.+-|-.-|.|+|.+..+
T Consensus 123 kLGY~~YR~Vi~YY~-~g~deda~dMRKalSrD~d 156 (173)
T KOG3234|consen 123 KLGYSVYRTVIEYYS-VGPDEDAYDMRKALSRDVD 156 (173)
T ss_pred hcCceEEEeeeeeec-cCCCcchHhhhhhhccCcc
Confidence 999999988888773 2455566678888866544
No 49
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=99.24 E-value=1.5e-10 Score=81.85 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=51.3
Q ss_pred EEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeecc
Q psy837 124 LYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDT 185 (226)
Q Consensus 124 ~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~ 185 (226)
..|..|++.|++||+|+|+.++..+.....+.|.. .++.|...|.+|++||+|+||+....
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~-~~l~v~~~N~~s~~ly~klGf~~~~~ 82 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALARELLERGKT-PFLYVDADNEASIRLYEKLGFREIEE 82 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSE-EEEEEETT-HHHHHHHHHCT-EEEEE
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHcCCEEEEE
Confidence 45789999999999999999999998888887765 78889999999999999999997743
No 50
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.15 E-value=3.2e-10 Score=87.51 Aligned_cols=119 Identities=11% Similarity=0.096 Sum_probs=84.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcccCCCceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEEc
Q psy837 53 LDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLE 132 (226)
Q Consensus 53 ~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V~ 132 (226)
+...|+.+|..|+...-.. +.--...+..+...-..|.++..+ |.++|++.+... .....+.+..|.|+
T Consensus 6 A~~~Di~~I~~Li~~~~~~-------gil~~rs~~~le~~i~dF~i~E~~--g~viGC~aL~~~--~~~~~gE~~~laV~ 74 (153)
T COG1246 6 ARISDIPAILELIRPLELQ-------GILLRRSREQLEEEIDDFTIIERD--GKVIGCAALHPV--LEEDLGELRSLAVH 74 (153)
T ss_pred ccccchHHHHHHHHHHhhc-------cccchhhHHHHHHHHhhheeeeeC--CcEEEEEeeccc--CccCeeeEEEEEEC
Confidence 3456788888887542110 000011112222233345667666 999999988721 23346778899999
Q ss_pred cccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccC
Q psy837 133 KQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTS 186 (226)
Q Consensus 133 ~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~ 186 (226)
|++||+|+|..|++.++..|++.|++++.+.+ +.+..||+++||+..+..
T Consensus 75 pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LT----t~~~~~F~~~GF~~vd~~ 124 (153)
T COG1246 75 PDYRGSGRGERLLERLLADARELGIKELFVLT----TRSPEFFAERGFTRVDKD 124 (153)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHcCCceeeeee----cccHHHHHHcCCeECccc
Confidence 99999999999999999999999999998764 257899999999988764
No 51
>KOG3138|consensus
Probab=99.13 E-value=1.3e-10 Score=93.09 Aligned_cols=86 Identities=14% Similarity=0.158 Sum_probs=73.8
Q ss_pred eEEEEEEEEccccccCCHHHHHHHHHHHHHHhCC-CcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCCCCCCCcccEEE
Q psy837 123 VLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNN-MSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDDNGSSESFCYFI 201 (226)
Q Consensus 123 ~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g-~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~~~~~~~~~y~i 201 (226)
++||..+.|.+.||.+|||+.|+..+...+.... ++.+.|.|...|..|+.||++.||+++...+.++.......++ +
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~~y~~~~~~~~~-~ 167 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVERLKNYYSILGPPDDS-F 167 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEeeccccccccccCcchh-h
Confidence 6999999999999999999999999999999877 8889999999999999999999999999999887544443444 5
Q ss_pred EeeeCCCC
Q psy837 202 LSKKNPRF 209 (226)
Q Consensus 202 l~k~l~~~ 209 (226)
|.+.+...
T Consensus 168 l~~~~~~~ 175 (187)
T KOG3138|consen 168 LRKLLIHG 175 (187)
T ss_pred hhhheecC
Confidence 55555443
No 52
>PRK01346 hypothetical protein; Provisional
Probab=99.13 E-value=7.7e-10 Score=99.52 Aligned_cols=123 Identities=11% Similarity=-0.005 Sum_probs=84.2
Q ss_pred EEEeeCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhh--hhcccCCCceEEEEEECCCCCeEEEEEEEEee---c-
Q psy837 45 IEYKKSTDLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGK--HSEMFDDRACYLVAKNGSSSTPVAFSHFRFDV---D- 118 (226)
Q Consensus 45 i~~~~~~~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~--~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~---~- 118 (226)
++++. ++++|++.+..|.... |. .. +..... ..... +....+++.++ +++||++.+.... .
T Consensus 7 ~~iR~---~~~~D~~~i~~L~~~~----f~-~~--~~~~~~~~~~~~~-~~~~~~va~~~--~~lvg~~~~~~~~~~~~~ 73 (411)
T PRK01346 7 ITIRT---ATEEDWPAWFRAAATG----FG-DS--PSDEELEAWRALV-EPDRTLGAFDG--DEVVGTAGAFDLRLTVPG 73 (411)
T ss_pred ceeec---CCHHHHHHHHHHHHHH----cC-CC--CChHHHHHHHHhc-CcCCeEEEEEC--CEEEEEEEEeccccccCC
Confidence 44444 4577888888886543 21 11 111111 11112 22334566665 8999999865321 1
Q ss_pred -CCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeecc
Q psy837 119 -FGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDT 185 (226)
Q Consensus 119 -~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~ 185 (226)
...+..+|..++|+|+|||+|+|+.||+.++..+++.|+..+.|.+.. ..||+++||.....
T Consensus 74 ~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~-----~~~Y~r~Gf~~~~~ 136 (411)
T PRK01346 74 GAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE-----GGIYGRFGYGPATY 136 (411)
T ss_pred CCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc-----hhhHhhCCCeeccc
Confidence 123689999999999999999999999999999999999888887643 37999999986644
No 53
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.12 E-value=4.6e-10 Score=103.38 Aligned_cols=87 Identities=16% Similarity=0.327 Sum_probs=69.3
Q ss_pred eEEEEEE-CCCCCeEEEEEEEEeecC-----CcceEEEEEEEEc-----------cccccCCHHHHHHHHHHHHHHhCCC
Q psy837 95 CYLVAKN-GSSSTPVAFSHFRFDVDF-----GEPVLYCYELQLE-----------KQVQRKGLGKFMMQVLELMAFKNNM 157 (226)
Q Consensus 95 ~~~~~~~-~~~g~ivGf~~~~~~~~~-----~~~~~yi~~l~V~-----------~~~rgkGlG~~Lm~~l~~~a~~~g~ 157 (226)
++++.+. ..++.++||+.++...+. .....+|.+|+|- ++|||+|+|+.||+.++.+|++.|+
T Consensus 412 e~F~~y~~~~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~ 491 (522)
T TIGR01211 412 EFFLSYEDPKNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGS 491 (522)
T ss_pred eEEEEEEcCCCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCC
Confidence 4444444 223689999999865431 1236788888865 8999999999999999999999999
Q ss_pred cEEEEEEcCCCHHHHHHHHHCCCeeec
Q psy837 158 SKVVLTTFKHNPDGLNFFYSLNYSVDD 184 (226)
Q Consensus 158 ~~i~l~v~~~N~~A~~FY~k~GF~~~~ 184 (226)
++|.|. +|..|++||+|+||+.++
T Consensus 492 ~~i~v~---s~~~A~~FY~klGf~~~g 515 (522)
T TIGR01211 492 EKILVI---SGIGVREYYRKLGYELDG 515 (522)
T ss_pred CEEEEe---eCchHHHHHHHCCCEEEc
Confidence 999874 388999999999998754
No 54
>KOG3397|consensus
Probab=99.12 E-value=5.4e-10 Score=87.27 Aligned_cols=131 Identities=18% Similarity=0.168 Sum_probs=91.3
Q ss_pred cccCCceEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhccc---C-CCceEEEEEECCCCCeEEEE
Q psy837 36 FKKNGLDLVIEYKKSTDLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMF---D-DRACYLVAKNGSSSTPVAFS 111 (226)
Q Consensus 36 ~~~~g~~~~i~~~~~~~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~---~-~~~~~~~~~~~~~g~ivGf~ 111 (226)
+...+-++.++-.. --++.++.+.+|+. +.|.-.+......+. + .....++..++ ..++||.+
T Consensus 6 papS~~~l~~vPiH---~rPELlk~~~~LIN---------~eWPRS~TsR~hSL~~ScDs~P~sL~Ll~E~-~~~VigH~ 72 (225)
T KOG3397|consen 6 PAPSMPDLFFVPLH---DRPELLKESMTLIN---------SEWPRSDTSREHSLKKSCDSPPMSLLLLNEE-NDEVLGHS 72 (225)
T ss_pred CCCCCCcceeEecc---ccHHHHHHHHHHHh---------ccCCccchhhhhhhhcccCCCCeeeeeeccc-ccceeeee
Confidence 34445555554422 23678888888873 556554433322221 1 13333444444 57899988
Q ss_pred EEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeec
Q psy837 112 HFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDD 184 (226)
Q Consensus 112 ~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~ 184 (226)
.+... .+....+++..+.|+.+.||+|.|+.||+.+|.+++..|++++.|++.+ -.+||+++||+..+
T Consensus 73 rLS~i-~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~D----Q~~FYe~lGYe~c~ 140 (225)
T KOG3397|consen 73 RLSHL-PNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDD----QCRFYESLGYEKCD 140 (225)
T ss_pred ccccC-CCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeeccc----chhhhhhhcccccC
Confidence 77643 3444588999999999999999999999999999999999999998654 47999999999653
No 55
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.11 E-value=9e-10 Score=96.37 Aligned_cols=96 Identities=11% Similarity=0.171 Sum_probs=76.2
Q ss_pred ceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHH
Q psy837 94 ACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLN 173 (226)
Q Consensus 94 ~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~ 173 (226)
..++++.++ |++||++.+. .+ +|..|.|+|++||+|+|+.||..++..+++.|+..+.+.+...| .+
T Consensus 31 d~~vv~~~~--~~lVg~g~l~---g~-----~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~---~~ 97 (332)
T TIGR00124 31 EIFIAVYED--EEIIGCGGIA---GN-----VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEY---AA 97 (332)
T ss_pred CEEEEEEEC--CEEEEEEEEe---cC-----EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchH---HH
Confidence 445666655 8999999875 21 47799999999999999999999999999999999998885444 57
Q ss_pred HHHHCCCeeeccCCCCCCCCCCcccEEEEeeeCCCCCC
Q psy837 174 FFYSLNYSVDDTSPEDDNGSSESFCYFILSKKNPRFKS 211 (226)
Q Consensus 174 FY~k~GF~~~~~~p~~~~~~~~~~~y~il~k~l~~~~~ 211 (226)
||+++||......+.. .+.|.+..++..+
T Consensus 98 fy~klGF~~i~~~~~~---------~v~mE~~~~~~~~ 126 (332)
T TIGR00124 98 LFEYCGFKTLAEAKDQ---------GVLLENSATRLKR 126 (332)
T ss_pred HHHHcCCEEeeeecce---------EEEEeccCcCHHH
Confidence 9999999998777642 3577776655443
No 56
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=3.6e-09 Score=83.42 Aligned_cols=111 Identities=9% Similarity=0.049 Sum_probs=80.7
Q ss_pred ceEEEEEEC-CCCCeEEEEEEEEeec-CCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHh-CCCcEEEEEEcCCCHH
Q psy837 94 ACYLVAKNG-SSSTPVAFSHFRFDVD-FGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFK-NNMSKVVLTTFKHNPD 170 (226)
Q Consensus 94 ~~~~~~~~~-~~g~ivGf~~~~~~~~-~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~-~g~~~i~l~v~~~N~~ 170 (226)
..+.+.... .++++||.+.+..... .......| ...+.|+++|+|+|+.++..+..++.. .++++|.+.|+..|.+
T Consensus 65 ~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~i-g~~l~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~ 143 (187)
T COG1670 65 GAFAIELKATGDGELIGVIGLSDIDRAANGDLAEI-GYWLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEA 143 (187)
T ss_pred ceEEEEEEeCCCCeEEEEEEEEEeccccccceEEE-EEEEChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHH
Confidence 444444433 1258999998874431 11223333 345699999999999999999999887 8999999999999999
Q ss_pred HHHHHHHCCCeeeccCCCCCCCCCCcccEEEEeee
Q psy837 171 GLNFFYSLNYSVDDTSPEDDNGSSESFCYFILSKK 205 (226)
Q Consensus 171 A~~FY~k~GF~~~~~~p~~~~~~~~~~~y~il~k~ 205 (226)
++++++|+||+..+.........+...|.++++..
T Consensus 144 S~rv~ek~Gf~~eg~~~~~~~~~g~~~d~~~~~~~ 178 (187)
T COG1670 144 SIRVYEKLGFRLEGELRQHEFIKGRWRDTVLYSLL 178 (187)
T ss_pred HHHHHHHcCChhhhhhhhceeeCCeeeeEEEEEEe
Confidence 99999999999998776653223444556555554
No 57
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=99.08 E-value=1.4e-09 Score=85.05 Aligned_cols=91 Identities=20% Similarity=0.219 Sum_probs=76.1
Q ss_pred CceEEEEEECCCCCeEEEEEEEEeec-----CCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCC
Q psy837 93 RACYLVAKNGSSSTPVAFSHFRFDVD-----FGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKH 167 (226)
Q Consensus 93 ~~~~~~~~~~~~g~ivGf~~~~~~~~-----~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~ 167 (226)
...|+ +.++ ++++||++.++.... .+...+| .|.|+.||+|+|++|++.....|+..|+++|++||.+.
T Consensus 68 ~~~y~-~v~~-d~~ivG~i~lRh~Ln~~ll~~gGHIGY----~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~d 141 (174)
T COG3981 68 ASTYW-AVDE-DGQIVGFINLRHQLNDFLLEEGGHIGY----SVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKD 141 (174)
T ss_pred ceeEE-EEec-CCcEEEEEEeeeecchHHHhcCCcccc----eeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 34444 4444 599999999998643 2455666 79999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHCCCeeeccCCCC
Q psy837 168 NPDGLNFFYSLNYSVDDTSPED 189 (226)
Q Consensus 168 N~~A~~FY~k~GF~~~~~~p~~ 189 (226)
|.++.+-=+++|=....+...+
T Consensus 142 N~ASrkvI~~NGGile~~~~~~ 163 (174)
T COG3981 142 NIASRKVIEANGGILENEFFGE 163 (174)
T ss_pred CchhhHHHHhcCCEEeEEEccC
Confidence 9999999999998877665443
No 58
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.04 E-value=9.7e-09 Score=81.33 Aligned_cols=137 Identities=11% Similarity=-0.014 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcccCC----CceEEEEEECCCCCeEEEEEEEEee-c-CCcceEEEE
Q psy837 54 DAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDD----RACYLVAKNGSSSTPVAFSHFRFDV-D-FGEPVLYCY 127 (226)
Q Consensus 54 ~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~~~----~~~~~~~~~~~~g~ivGf~~~~~~~-~-~~~~~~yi~ 127 (226)
++.|...+..+....+. ++.+......+... ..--+++.++ |++||.+.|.... . .....+-+.
T Consensus 10 ~~~d~~~i~~~~~~aF~--------~~~e~~~v~~lR~~~~~~~~LslVA~d~--g~vvG~Il~s~v~~~g~~~~~~~La 79 (171)
T COG3153 10 TPADIPAIEALTREAFG--------PGREAKLVDKLREGGRPDLTLSLVAEDD--GEVVGHILFSPVTVGGEELGWLGLA 79 (171)
T ss_pred ChhhHHHHHHHHHHHhh--------cchHHHHHHHHHhcCCcccceeEEEeeC--CEEEEEEEEeEEEecCcccceEEEE
Confidence 35677777777655433 23333333333322 2223455555 9999999887542 2 234566688
Q ss_pred EEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCCCCCCCcccEEEEeeeCC
Q psy837 128 ELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDDNGSSESFCYFILSKKNP 207 (226)
Q Consensus 128 ~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~~~~~~~~~y~il~k~l~ 207 (226)
-|.|+|++||||||+.||+..++.++..|+..|++. ..-.||.++||+......-... ...++-.+|.+.|.
T Consensus 80 PLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vl------Gdp~YY~rfGF~~~~~~~l~~p--~~~~~~~fl~~~L~ 151 (171)
T COG3153 80 PLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVL------GDPTYYSRFGFEPAAGAKLYAP--GPVPDERFLALELG 151 (171)
T ss_pred eEEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEe------cCcccccccCcEEccccccccC--CCCCCceEEEEEcc
Confidence 899999999999999999999999999999988875 3457899999998766543321 12345557777775
Q ss_pred C
Q psy837 208 R 208 (226)
Q Consensus 208 ~ 208 (226)
.
T Consensus 152 ~ 152 (171)
T COG3153 152 D 152 (171)
T ss_pred C
Confidence 4
No 59
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.84 E-value=2.9e-08 Score=75.61 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=70.6
Q ss_pred CCceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCC-CcEEEEEEcCCCHH
Q psy837 92 DRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNN-MSKVVLTTFKHNPD 170 (226)
Q Consensus 92 ~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g-~~~i~l~v~~~N~~ 170 (226)
...+.++.++. +|++++++++.+...... .+-|..+.|+|++||+|+|+.||..+...+.+.. -+.+.|+. ...
T Consensus 47 ~~~~Hl~~~~~-~g~LvAyaRLl~~~~~~~-~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~A---Qah 121 (155)
T COG2153 47 GDTRHLLGWTP-DGELVAYARLLPPGAEYE-EVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGA---QAH 121 (155)
T ss_pred cccceEEEEcC-CCeEEEEEecCCCCCCcC-ceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEeh---HHH
Confidence 35667888885 599999999885433333 3669999999999999999999999988887643 45566663 567
Q ss_pred HHHHHHHCCCeeeccC
Q psy837 171 GLNFFYSLNYSVDDTS 186 (226)
Q Consensus 171 A~~FY~k~GF~~~~~~ 186 (226)
...||.+.||+..+..
T Consensus 122 Lq~fYa~~GFv~~~e~ 137 (155)
T COG2153 122 LQDFYASFGFVRVGEE 137 (155)
T ss_pred HHHHHHHhCcEEcCch
Confidence 8899999999977544
No 60
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.82 E-value=3.1e-08 Score=63.52 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=50.1
Q ss_pred CCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Q psy837 105 STPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLT 163 (226)
Q Consensus 105 g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~ 163 (226)
++++|++.+..... ....+++..+.|+|++||+|+|+.||..+..++.+.+++++.++
T Consensus 8 ~~~ig~~~~~~~~~-~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~ 65 (65)
T cd04301 8 GEIVGFASLSPDGS-GGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRLE 65 (65)
T ss_pred CEEEEEEEEEecCC-CCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEeC
Confidence 88999999875432 24578999999999999999999999999999999999988763
No 61
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=98.77 E-value=7.2e-08 Score=80.47 Aligned_cols=87 Identities=10% Similarity=0.051 Sum_probs=69.6
Q ss_pred CceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHH
Q psy837 93 RACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGL 172 (226)
Q Consensus 93 ~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~ 172 (226)
..+-++..++ |+||..+.-. .....+.-|..++++|+|||+|+++.|+..+..---..|. +.+|-+...|..|.
T Consensus 176 ~~~~~f~~~d--~~iVa~A~t~---a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk-~~~L~~~~~N~~A~ 249 (268)
T COG3393 176 RSRTYFLEGD--GKIVAKAETA---AENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGK-IPCLFVNSDNPVAR 249 (268)
T ss_pred ceeEEEEccC--CcEEEeeecc---ccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCC-eeEEEEecCCHHHH
Confidence 4444555554 7999888665 4445578899999999999999999999998766666675 47777789999999
Q ss_pred HHHHHCCCeeecc
Q psy837 173 NFFYSLNYSVDDT 185 (226)
Q Consensus 173 ~FY~k~GF~~~~~ 185 (226)
+.|+|+||+..+.
T Consensus 250 ~iY~riGF~~~g~ 262 (268)
T COG3393 250 RIYQRIGFREIGE 262 (268)
T ss_pred HHHHHhCCeecce
Confidence 9999999997764
No 62
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=98.71 E-value=7.6e-07 Score=72.09 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=71.4
Q ss_pred hhhhhhcccCCCceEEEEEECCCC--CeEEEEEEEEeecC----------------------------------CcceEE
Q psy837 82 PQGKHSEMFDDRACYLVAKNGSSS--TPVAFSHFRFDVDF----------------------------------GEPVLY 125 (226)
Q Consensus 82 ~~~~~~e~~~~~~~~~~~~~~~~g--~ivGf~~~~~~~~~----------------------------------~~~~~y 125 (226)
+.....-+..+..+.+++..+ + +++|.+.+..+..- ....+-
T Consensus 15 PnDL~~LlDaP~h~l~~l~~~--~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~R 92 (196)
T PF13718_consen 15 PNDLQLLLDAPNHRLFVLLQP--GDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGAR 92 (196)
T ss_dssp HHHHHHHHH-TTEEEEEEE-S--S--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEE
T ss_pred HHHHHHHhcCCcceeehhccC--CCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhccee
Confidence 333333333455554555554 6 99999987755220 123677
Q ss_pred EEEEEEccccccCCHHHHHHHHHHHHH-------------------------HhCCCcEEEEEEcCCCHHHHHHHHHCCC
Q psy837 126 CYELQLEKQVQRKGLGKFMMQVLELMA-------------------------FKNNMSKVVLTTFKHNPDGLNFFYSLNY 180 (226)
Q Consensus 126 i~~l~V~~~~rgkGlG~~Lm~~l~~~a-------------------------~~~g~~~i~l~v~~~N~~A~~FY~k~GF 180 (226)
|.+|.|+|++|++|+|+++++.++.++ +..+++.+-.. |--+..-.+||.|+||
T Consensus 93 IvRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtS-FG~t~~Ll~FW~k~gf 171 (196)
T PF13718_consen 93 IVRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTS-FGATPELLKFWQKNGF 171 (196)
T ss_dssp EEEEEE-CCC-SSSHHHHHHHHHHHT-----------------------------S-SEEEEE-EE--HHHHHHHHCTT-
T ss_pred EEEEEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEec-cCCCHHHHHHHHHCCc
Confidence 899999999999999999999999999 45677765554 6668889999999999
Q ss_pred eeeccCCCCCCCCCCcccEEEEeeeC
Q psy837 181 SVDDTSPEDDNGSSESFCYFILSKKN 206 (226)
Q Consensus 181 ~~~~~~p~~~~~~~~~~~y~il~k~l 206 (226)
....-.+... ...+..-.||-|+|
T Consensus 172 ~pv~l~~~~n--~~SGe~S~imlr~l 195 (196)
T PF13718_consen 172 VPVYLGQTRN--EASGEHSAIMLRPL 195 (196)
T ss_dssp EEEEE-SS----TTT---EEEEEEE-
T ss_pred EEEEEecCcc--cccCceeeeEEeec
Confidence 9775554332 11344667887775
No 63
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=98.53 E-value=2.8e-06 Score=80.83 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=99.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcccCCCceEEEEEECCCCCeEEEEEEEEeecC------------
Q psy837 52 DLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDF------------ 119 (226)
Q Consensus 52 ~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~------------ 119 (226)
-.+++.+..+|.|+. .++|++++ .....-+-.+...++++..+ ++.+|+.+.+......
T Consensus 436 ~~~ee~Lr~~~gllV---~AHYRnsP-----~DL~~L~DaP~h~~~al~~~-~~~~va~~qva~EG~l~~~~i~~~~~g~ 506 (758)
T COG1444 436 LFDEELLRQVYGLLV---SAHYRNSP-----NDLRRLLDAPHHHIFALRAP-EGKPVAVWQVAEEGGLSDELIDIWLGGR 506 (758)
T ss_pred hhCHHHHHHHHhHHh---hhhccCCH-----HHHHHHhcCCCCeeEEEEcC-CCceEEEEEeeccCCCcHHHHHHHhcCC
Confidence 445777777777764 46775433 33333334455555656555 4578877766543221
Q ss_pred ---------------------CcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHC
Q psy837 120 ---------------------GEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSL 178 (226)
Q Consensus 120 ---------------------~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~ 178 (226)
.-...-|..|.|+|++|++|||++|++.+.+.|+ .+++.+-.. |-.++.-++||.||
T Consensus 507 r~~GnlIp~~l~~~~~~~~fa~l~G~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~Dwlgvs-FG~t~~L~rFW~rn 584 (758)
T COG1444 507 RPRGNLIPDLLAKHHRDPEFAKLVGWRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVS-FGYTEELLRFWLRN 584 (758)
T ss_pred CCCCcccHHHHHHhhcchhhcccceeeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeec-cCCCHHHHHHHHHc
Confidence 0113448899999999999999999999999997 577766665 66788899999999
Q ss_pred CCeeeccCCCCCCCCCCcccEEEEeeeCCC
Q psy837 179 NYSVDDTSPEDDNGSSESFCYFILSKKNPR 208 (226)
Q Consensus 179 GF~~~~~~p~~~~~~~~~~~y~il~k~l~~ 208 (226)
||..+..+|..- ...+..-+||-|+|..
T Consensus 585 GF~pVhls~~rn--~~SGeys~i~lkpLs~ 612 (758)
T COG1444 585 GFVPVHLSPTRN--ASSGEYTAIVLKPLSD 612 (758)
T ss_pred CeEEEEecCccC--cCCCceeEEEEecCCH
Confidence 999998887643 1223456788888755
No 64
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.44 E-value=1.6e-06 Score=60.14 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=50.9
Q ss_pred CCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHC
Q psy837 105 STPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSL 178 (226)
Q Consensus 105 g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~ 178 (226)
|+.+|++.+. . ...++.|....|.|++||||+|+.||+.+..+|+++|.+ |..+| .-+.++++++
T Consensus 8 g~~~a~l~Y~---~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~k-v~p~C----~y~~~~~~~h 72 (78)
T PF14542_consen 8 GEEIAELTYR---E-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLK-VVPTC----SYVAKYFRRH 72 (78)
T ss_dssp TTEEEEEEEE---E-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-E-EEETS----HHHHHHHHH-
T ss_pred CEEEEEEEEE---e-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCE-EEEEC----HHHHHHHHhC
Confidence 7899999997 3 344888999999999999999999999999999999974 66554 3455666553
No 65
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=98.20 E-value=1.1e-05 Score=60.51 Aligned_cols=70 Identities=13% Similarity=0.129 Sum_probs=62.6
Q ss_pred cCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcC--CCHHHHHHHHHCCCeeeccCC
Q psy837 118 DFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFK--HNPDGLNFFYSLNYSVDDTSP 187 (226)
Q Consensus 118 ~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~--~N~~A~~FY~k~GF~~~~~~p 187 (226)
+--+..+|+..+.|....||.|+|+.|-+.+-.+|+..|+-.+.++|.. .|+++..|...+||...++-.
T Consensus 79 ErYe~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ 150 (167)
T COG3818 79 ERYENFFYVDRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQAT 150 (167)
T ss_pred hhCCceEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceE
Confidence 3445689999999999999999999999999999999999999998864 789999999999999887654
No 66
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=98.19 E-value=8.6e-05 Score=55.78 Aligned_cols=118 Identities=10% Similarity=0.168 Sum_probs=68.0
Q ss_pred EEEeeCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcccCCCceEEEEEECCCCCeEEEEEEEEeecCCcceE
Q psy837 45 IEYKKSTDLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVL 124 (226)
Q Consensus 45 i~~~~~~~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~ 124 (226)
+.+.+...+++.|...+-+++ +-...............++.+.-+ ++++|-+.+... +. ..
T Consensus 2 LTI~rl~~ls~Qd~iDL~KIw-------------p~~~~~~l~~~l~~~~~l~aArFN--dRlLgAv~v~~~---~~-~~ 62 (128)
T PF12568_consen 2 LTIERLTTLSEQDRIDLAKIW-------------PQQDPEQLEQWLDEGHRLFAARFN--DRLLGAVKVTIS---GQ-QA 62 (128)
T ss_dssp -EEEE-SS--HHHHHHHHHH--------------TTS----------SSEEEEEEEET--TEEEEEEEEEEE---TT-EE
T ss_pred eEEEEcCCCCHHHHHHHHHhC-------------CCCCHHHHHHHhccCCeEEEEEec--hheeeeEEEEEc---Cc-ce
Confidence 456667788888888877776 111112222223445556666666 899999988732 22 67
Q ss_pred EEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEc---CCCHHHH-HHHHHCCCeee
Q psy837 125 YCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTF---KHNPDGL-NFFYSLNYSVD 183 (226)
Q Consensus 125 yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~---~~N~~A~-~FY~k~GF~~~ 183 (226)
.|.+|+|.+--||+|+|+.|++.+...+ .+++...+... ..+.+++ .|...+||...
T Consensus 63 ~L~~l~VRevTRrRGVG~yLlee~~rq~--p~i~~w~l~~~~~~~~~~~~~~~Fm~a~GF~~~ 123 (128)
T PF12568_consen 63 ELSDLCVREVTRRRGVGLYLLEEVLRQL--PDIKHWWLADEGVEPQDRAVMAAFMQACGFSAQ 123 (128)
T ss_dssp EEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHHHHHHHHHT-EE-
T ss_pred EEeeEEEeeccccccHHHHHHHHHHHHC--CCCcEEEEecCCCcccchHHHHHHHHHcCcccc
Confidence 8999999999999999999999887766 35555555432 2255555 57799999643
No 67
>KOG4135|consensus
Probab=98.12 E-value=2.8e-05 Score=59.58 Aligned_cols=65 Identities=14% Similarity=0.092 Sum_probs=56.1
Q ss_pred ceEEEEEEEEccccccCCHHHHHHHHHHHHHHh-CCCcEEEEEEcCCCHHHHHHHHHCCCeeeccC
Q psy837 122 PVLYCYELQLEKQVQRKGLGKFMMQVLELMAFK-NNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTS 186 (226)
Q Consensus 122 ~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~-~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~ 186 (226)
..+.+.-+.-.|..||+|+|+..+..+..++.. .++.+....+...|.++++||+|++|......
T Consensus 106 ~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q~~~n 171 (185)
T KOG4135|consen 106 ITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKFLFTQVFYN 171 (185)
T ss_pred eeeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHhhheeeeee
Confidence 445555556689999999999999999999976 68999999999999999999999999977653
No 68
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=98.02 E-value=2.9e-05 Score=56.09 Aligned_cols=54 Identities=9% Similarity=0.163 Sum_probs=47.2
Q ss_pred CCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEE
Q psy837 104 SSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKV 160 (226)
Q Consensus 104 ~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i 160 (226)
+|..+|++.+. ..+...+.|..-.|.+++||||+|+.|++.+...|++.|.+-|
T Consensus 23 ~G~~~~e~~y~---~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kii 76 (99)
T COG2388 23 EGEVIGEATYY---DRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKII 76 (99)
T ss_pred CCcEEEEEEEe---cCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEc
Confidence 38899999887 5565688999999999999999999999999999999988533
No 69
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=98.01 E-value=6.6e-05 Score=63.76 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=59.4
Q ss_pred EEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHH
Q psy837 96 YLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFF 175 (226)
Q Consensus 96 ~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY 175 (226)
-+++..+ |++|+-|.-.+..+.+. --+|..+|+||||||++.+...+...|.++|+. -.++| .|.+++++=
T Consensus 167 Gf~i~~~--~~iVs~~~s~~~~~~~~----EI~I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~-P~WDc--~N~~S~~lA 237 (265)
T PF12746_consen 167 GFCILHD--GEIVSGCSSYFVYENGI----EIDIETHPEYRGKGLATAVAAAFILECLENGLY-PSWDC--HNLASIALA 237 (265)
T ss_dssp EEEEEET--TEEEEEEEEEEEETTEE----EEEEEE-CCCTTSSHHHHHHHHHHHHHHHTT-E-EE-EE--SSHHHHHHH
T ss_pred EEEEEEC--CEEEEEEEEEEEECCEE----EEEEEECHHhhcCCHHHHHHHHHHHHHHHCCCC-cCeeC--CCHHHHHHH
Confidence 3445555 78887665444444432 236889999999999999999999999999986 46677 599999999
Q ss_pred HHCCCeeeccCC
Q psy837 176 YSLNYSVDDTSP 187 (226)
Q Consensus 176 ~k~GF~~~~~~p 187 (226)
+|+||+....-+
T Consensus 238 ~kLGf~~~~~Y~ 249 (265)
T PF12746_consen 238 EKLGFHFDFEYT 249 (265)
T ss_dssp HHCT--EEEEEE
T ss_pred HHcCCcccceee
Confidence 999999775544
No 70
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=97.97 E-value=1.3e-05 Score=56.07 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=41.2
Q ss_pred EEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCC
Q psy837 129 LQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNY 180 (226)
Q Consensus 129 l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF 180 (226)
++|+|++||+|+|+.|+..++..++..|+. .|..++.+|.++||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~--------~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS--------LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce--------ehHHHHHHHHhcCC
Confidence 899999999999999999999999987765 68899999999999
No 71
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=97.96 E-value=3.9e-05 Score=54.15 Aligned_cols=73 Identities=15% Similarity=0.032 Sum_probs=60.2
Q ss_pred CCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeee
Q psy837 104 SSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVD 183 (226)
Q Consensus 104 ~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~ 183 (226)
+|.+|--+... . ...+..-+..|+|||||+.+.++-.+.....+.|+- +...|.+.|+.++++.+++||...
T Consensus 7 eG~PVSW~lmd---q----tge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P-~Y~hv~~~N~~~~r~~~~lg~~~~ 78 (89)
T PF08444_consen 7 EGNPVSWSLMD---Q----TGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFP-FYGHVDEDNEASQRLSKSLGFIFM 78 (89)
T ss_pred CCCEeEEEEec---c----cccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCC-eEeehHhccHHHHHHHHHCCCeec
Confidence 57777665443 1 223445568999999999999999999999999986 899999999999999999999975
Q ss_pred c
Q psy837 184 D 184 (226)
Q Consensus 184 ~ 184 (226)
.
T Consensus 79 p 79 (89)
T PF08444_consen 79 P 79 (89)
T ss_pred C
Confidence 4
No 72
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=97.68 E-value=0.0059 Score=50.11 Aligned_cols=133 Identities=11% Similarity=0.161 Sum_probs=91.5
Q ss_pred eeCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhh----hhhcccCCCceEEEEEECCCCCeEEEEEEEEeec-----
Q psy837 48 KKSTDLDAETKKWVWELEEKNMKHSYEVCDIGWDPQG----KHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVD----- 118 (226)
Q Consensus 48 ~~~~~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~----~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~----- 118 (226)
....+..+++++++|.|-.. .| ....||+... ...+.-....+|++...+ +|+++|++.+..+..
T Consensus 8 ~~~~~~~~~~l~~~~rLR~~----VF-~~elgW~~~~~~g~E~D~yD~~~~~yll~~~~-~g~vvG~~RLlptt~p~ml~ 81 (207)
T PRK13834 8 PDQYEREASLLKQMHRLRAR----VF-GGRLGWDVSITDGEERDQFDDLKPTYILAISD-SGRVAGCARLLPAIGPTMLA 81 (207)
T ss_pred CchhhcCHHHHHHHHHHHHH----Hh-ccccCCCCCCCCCcCccCCCCCCCEEEEEEeC-CCeEEEEEecccCCCcchhh
Confidence 34456667888999888643 33 2445675422 223334446777777766 689999998754310
Q ss_pred -------------CCcceEEEEEEEEccccccC---C----HHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHC
Q psy837 119 -------------FGEPVLYCYELQLEKQVQRK---G----LGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSL 178 (226)
Q Consensus 119 -------------~~~~~~yi~~l~V~~~~rgk---G----lG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~ 178 (226)
....++.+..++|++++++. + +...|+..+.+++..+|++.+...+ ...-.+.+.++
T Consensus 82 ~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~---~~~~~r~l~r~ 158 (207)
T PRK13834 82 QVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTAT---DLRFERILARA 158 (207)
T ss_pred hhcHHhcCCCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEE---CHHHHHHHHHc
Confidence 12457889999999985322 2 5567899999999999999887665 44667899999
Q ss_pred CCeeeccCCCC
Q psy837 179 NYSVDDTSPED 189 (226)
Q Consensus 179 GF~~~~~~p~~ 189 (226)
||....-.|..
T Consensus 159 G~~~~~lG~~~ 169 (207)
T PRK13834 159 GWPMQRLGEPK 169 (207)
T ss_pred CCCeEECCCCE
Confidence 99987766544
No 73
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=97.62 E-value=0.00088 Score=52.29 Aligned_cols=106 Identities=14% Similarity=0.055 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhh-hcCCCCChhhhhhcccCC---CceEEEEEECCCCCeEEEEEEEEe----ecCCcce
Q psy837 52 DLDAETKKWVWELEEKNMKHSYE-VCDIGWDPQGKHSEMFDD---RACYLVAKNGSSSTPVAFSHFRFD----VDFGEPV 123 (226)
Q Consensus 52 ~~~~~~l~~i~~l~~~~~~~~y~-~~~~~w~~~~~~~e~~~~---~~~~~~~~~~~~g~ivGf~~~~~~----~~~~~~~ 123 (226)
-.++++++++|+|+.+|.-+.-+ .-.+.++.+.....+..+ ..+.+-++...++++|||+...+. .+.....
T Consensus 31 l~d~~~l~ely~lL~~nYVEDdd~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kLvgfIsaip~~irv~~~~~~~ 110 (162)
T PF01233_consen 31 LNDDEELKELYELLNENYVEDDDNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKLVGFISAIPATIRVRDKVIKM 110 (162)
T ss_dssp TTSHHHHHHHHHHHHHHSSBTTTSSEEE---HHHHHHHHTSTT--GGGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEE
T ss_pred CCCHHHHHHHHHHHHhcCccCCcceEEeeCCHHHHhheeeCcCCccceEEEEEECCCCEEEEEEccceEEEEEeeeEeee
Confidence 34689999999999876533221 112356666666666665 345677776546999999986643 1234467
Q ss_pred EEEEEEEEccccccCCHHHHHHHHHHHHHHhCCC
Q psy837 124 LYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNM 157 (226)
Q Consensus 124 ~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~ 157 (226)
+.|.-|+|++..|.++++-.|++++...+...|+
T Consensus 111 ~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI 144 (162)
T PF01233_consen 111 VEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGI 144 (162)
T ss_dssp EEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT-
T ss_pred eeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCc
Confidence 8899999999999999999999999999988775
No 74
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=97.59 E-value=0.0016 Score=48.81 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHHHHHH-hhhcCCCCChhhh--hhccc--CCCceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEE
Q psy837 54 DAETKKWVWELEEKNMKHS-YEVCDIGWDPQGK--HSEMF--DDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYE 128 (226)
Q Consensus 54 ~~~~l~~i~~l~~~~~~~~-y~~~~~~w~~~~~--~~e~~--~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~ 128 (226)
++++++++++++..++... -. ....+..... ..... ......+++..+ |++||+.... ..+. .+|.+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~--g~~va~~~~~---~~~~-~~~~~~ 99 (142)
T PF13480_consen 27 DPADLEAFYELYRESWARRHGG-FAPPFSRDFFRDLLRSLAESGRLRLFVLYDG--GEPVAFALGF---RHGG-TLYYWY 99 (142)
T ss_pred CHHHHHHHHHHHHHHHhhhhCC-CCCcchHHHHHHHHHhhccCCCEEEEEEEEC--CEEEEEEEEE---EECC-EEEEEE
Confidence 6788999999987765544 10 0011222111 11111 234555556665 9999987554 2232 778888
Q ss_pred EEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Q psy837 129 LQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTT 164 (226)
Q Consensus 129 l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v 164 (226)
..++|+++..++|..|+..+...|...|++.+-+..
T Consensus 100 ~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~ 135 (142)
T PF13480_consen 100 GGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGG 135 (142)
T ss_pred EEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 899999999999999999999999999998887754
No 75
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=97.53 E-value=0.0062 Score=51.18 Aligned_cols=129 Identities=13% Similarity=0.191 Sum_probs=88.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCCCCChh------hhhhcccCCCceEEEEEECCCCCeEEEEEEEEee--------
Q psy837 52 DLDAETKKWVWELEEKNMKHSYEVCDIGWDPQ------GKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDV-------- 117 (226)
Q Consensus 52 ~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~------~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~-------- 117 (226)
..++++++.++.+-.+ .| ....+|... ....+ .+..+.++++.+..+|++||++++....
T Consensus 13 a~~~~~~~~~~~lR~~----VF-v~e~gw~~~~~~~~~~E~D~-~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~ 86 (241)
T TIGR03694 13 AVTPELLEEAFRLRYQ----VY-CEELGFEPPSDYPDGLETDE-YDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPF 86 (241)
T ss_pred cCCHHHHHHHHHHHHH----HH-HHhcCCCCCCCCCCCCcCCC-CCCCCcEEEEEECCCCCEEEEEEEeccccccccccc
Confidence 5567788888888654 33 134567621 12222 3345566666653258999999987531
Q ss_pred c-------------------CCcceEEEEEEEEccccccC--------C--------------------HHHHHHHHHHH
Q psy837 118 D-------------------FGEPVLYCYELQLEKQVQRK--------G--------------------LGKFMMQVLEL 150 (226)
Q Consensus 118 ~-------------------~~~~~~yi~~l~V~~~~rgk--------G--------------------lG~~Lm~~l~~ 150 (226)
+ ....++.+..++|++++|++ | +...|+..+..
T Consensus 87 p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 166 (241)
T TIGR03694 87 PFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIA 166 (241)
T ss_pred cHHHHhccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHH
Confidence 0 01347789999999999974 2 44668888999
Q ss_pred HHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCC
Q psy837 151 MAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPED 189 (226)
Q Consensus 151 ~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~ 189 (226)
+|..+|++.+...+ ...-.+++.++|+......|..
T Consensus 167 ~a~~~Gi~~~~~v~---~~~l~r~l~r~G~~~~~lG~~~ 202 (241)
T TIGR03694 167 LSSANGITHWYAIM---EPRLARLLSRFGIQFRQVGPPV 202 (241)
T ss_pred HHHHCCCcEEEEEe---CHHHHHHHHHhCCceEEcCCCe
Confidence 99999999877765 4567788999999887666544
No 76
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=97.52 E-value=0.0045 Score=49.82 Aligned_cols=127 Identities=17% Similarity=0.226 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhh----hhcccCCCceEEEEEECCCCCeEEEEEEEEeec----------
Q psy837 53 LDAETKKWVWELEEKNMKHSYEVCDIGWDPQGK----HSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVD---------- 118 (226)
Q Consensus 53 ~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~----~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~---------- 118 (226)
++.++++.+|.+-.+ .| ....||+-... ..+.-.+...|+++.++ |+++|++++.++..
T Consensus 5 ~~~~~l~~~~rlR~~----vF-v~rlgW~v~~~dg~E~DqyD~~~~~ylv~~~~--g~v~g~~RLlptt~p~ML~~~F~~ 77 (182)
T PF00765_consen 5 LSRRLLEEMFRLRHR----VF-VDRLGWDVPCEDGMEIDQYDDPDAVYLVALDD--GRVVGCARLLPTTGPYMLSDVFPH 77 (182)
T ss_dssp HHHHHHHHHHHHHHH----HH-TTCSCCCHHCCTSEE--TTGCTT-EEEEEEET--TEEEEEEEEEETTS--HHHHCTGG
T ss_pred cCHHHHHHHHHHHHH----HH-HHhhCCCCcCCCCcEeeecCCCCCeEEEEEEC--CEEEEEeeeccCCCcchhhhHHHH
Confidence 345677777777543 33 23457764322 23344457888888887 99999999886521
Q ss_pred --------CCcceEEEEEEEEcccccc------CCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeec
Q psy837 119 --------FGEPVLYCYELQLEKQVQR------KGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDD 184 (226)
Q Consensus 119 --------~~~~~~yi~~l~V~~~~rg------kGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~ 184 (226)
.+..+..+..++|+++..+ .-+...|+..+.++|..+|++.+..-+ ..+-.+++++.||....
T Consensus 78 ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~~gi~~~v~V~---~~~~~r~l~r~G~~~~~ 154 (182)
T PF00765_consen 78 LLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFALSNGIRHIVGVV---DPAMERILRRAGWPVRR 154 (182)
T ss_dssp GHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHHCTT-SEEEEEE---EHHHHHHHHHCT-EEEE
T ss_pred HhCCCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHHHHHHHHHCCCCEEEEEE---ChHHHHHHHHcCCceEE
Confidence 1246788999999998532 246778999999999999999988766 46788999999999887
Q ss_pred cCCCC
Q psy837 185 TSPED 189 (226)
Q Consensus 185 ~~p~~ 189 (226)
..+..
T Consensus 155 lG~~~ 159 (182)
T PF00765_consen 155 LGPPR 159 (182)
T ss_dssp SSEEE
T ss_pred CCCCe
Confidence 76543
No 77
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=97.48 E-value=0.00015 Score=65.11 Aligned_cols=78 Identities=18% Similarity=0.325 Sum_probs=58.5
Q ss_pred CCCeEEEEEEEEeecC------CcceEEEEEEEE----------ccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCC
Q psy837 104 SSTPVAFSHFRFDVDF------GEPVLYCYELQL----------EKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKH 167 (226)
Q Consensus 104 ~g~ivGf~~~~~~~~~------~~~~~yi~~l~V----------~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~ 167 (226)
.+-++||..+++..+. ..+..-+.+++| ...+|.+|+|+.||+.+|.+|+..++++|.+. +
T Consensus 415 ~d~lig~lrlR~p~e~~~r~e~~~~~aivrelhvyg~~vpig~~~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~vi---S 491 (515)
T COG1243 415 NDILIGFLRLREPSEGAHREEIDDKTAIVRELHVYGSEVPIGKREDEWQHRGYGRELLEEAERIAREEGAKKILVI---S 491 (515)
T ss_pred hhhhhheeeecccccchhhhhcccchhhhhhhhccccccccccCcchhhcccHHHHHHHHHHHHHHhhccccEEEE---e
Confidence 3679999999875431 111222222222 46799999999999999999999888888776 3
Q ss_pred CHHHHHHHHHCCCeeec
Q psy837 168 NPDGLNFFYSLNYSVDD 184 (226)
Q Consensus 168 N~~A~~FY~k~GF~~~~ 184 (226)
-.++..+|+|+||..++
T Consensus 492 giG~ReYy~k~GY~~~g 508 (515)
T COG1243 492 GIGVREYYRKLGYELDG 508 (515)
T ss_pred cccHHHHHHHhCccccC
Confidence 66889999999999774
No 78
>KOG4144|consensus
Probab=97.44 E-value=0.00015 Score=56.08 Aligned_cols=82 Identities=10% Similarity=0.145 Sum_probs=60.8
Q ss_pred CCeEEEEEEEE-eec-----------CCcceEEEEEEEEccccccCCHHHHHHHH-HHHHHHhCCCcEEEEEEcCCCHHH
Q psy837 105 STPVAFSHFRF-DVD-----------FGEPVLYCYELQLEKQVQRKGLGKFMMQV-LELMAFKNNMSKVVLTTFKHNPDG 171 (226)
Q Consensus 105 g~ivGf~~~~~-~~~-----------~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~-l~~~a~~~g~~~i~l~v~~~N~~A 171 (226)
+.+||++.-.. +.+ .+...+.|+.+.|+|+||.+|+|+.|+.. +...+.+.-..++.|-+ -.+-
T Consensus 71 ~tLIghIigs~~~~E~lt~ESm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~---h~pL 147 (190)
T KOG4144|consen 71 GTLIGHIIGSLWDKERLTQESMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALIC---HDPL 147 (190)
T ss_pred ccceehhhcccCcchhhhHHHHhhhhcCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeee---cCCc
Confidence 67888876432 111 23345889999999999999999999887 66777665556676665 4577
Q ss_pred HHHHHHCCCeeeccCCCC
Q psy837 172 LNFFYSLNYSVDDTSPED 189 (226)
Q Consensus 172 ~~FY~k~GF~~~~~~p~~ 189 (226)
+.||+++||+..+.....
T Consensus 148 vPFYEr~gFk~vgp~~~~ 165 (190)
T KOG4144|consen 148 VPFYERFGFKAVGPCAIT 165 (190)
T ss_pred cchhHhcCceeecccccc
Confidence 899999999988765443
No 79
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=97.42 E-value=0.0016 Score=48.28 Aligned_cols=75 Identities=15% Similarity=0.125 Sum_probs=52.3
Q ss_pred CCeEEEEEEEEe-ecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeee
Q psy837 105 STPVAFSHFRFD-VDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVD 183 (226)
Q Consensus 105 g~ivGf~~~~~~-~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~ 183 (226)
|-+|||+.+--. .....--.-+.++.|...|||+|+|++..+.+-..+. | .-.+.+...|.+|+.||++.-+...
T Consensus 46 ~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~--g--~w~Va~i~EN~PA~~fwK~~~~t~~ 121 (143)
T COG5628 46 GLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAW--G--VWQVATVRENTPARAFWKRVAETYP 121 (143)
T ss_pred CceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHhh--c--eEEEEEeccCChhHHHHHhhhcccc
Confidence 789999865311 1111112336789999999999999999888755443 3 2445556789999999999877643
No 80
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=97.40 E-value=0.0066 Score=48.69 Aligned_cols=122 Identities=15% Similarity=0.104 Sum_probs=75.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCCCCC--hhhhhhcccCCCceEEEEEECCCCCeEEEEEEE-Eee---cCCcceEE
Q psy837 52 DLDAETKKWVWELEEKNMKHSYEVCDIGWD--PQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFR-FDV---DFGEPVLY 125 (226)
Q Consensus 52 ~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~--~~~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~-~~~---~~~~~~~y 125 (226)
..+++.+++++++.-. ..|.+. +-..+.+-+.++-++.++....+.++|+.+++. |.. ..+.+..+
T Consensus 9 NP~~e~~d~fmk~~g~--------~r~~Fk~~Di~~wk~sf~~~Y~l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~ 80 (181)
T PF06852_consen 9 NPPQEYFDQFMKLHGN--------ERWNFKRNDIKLWKESFDDDYWLVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQF 80 (181)
T ss_pred CCCHHHHHHHHHHhcC--------CcccccHHHHHHHHHhhccCeEEEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEE
Confidence 5567888888887632 123222 222334444554555555444367788877764 332 12467899
Q ss_pred EEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHH-HHCCCeeecc
Q psy837 126 CYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFF-YSLNYSVDDT 185 (226)
Q Consensus 126 i~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY-~k~GF~~~~~ 185 (226)
+.-..++|+|||+|+++.+-+.+....+..+- -.++. .|..+.+|| +-+||...+.
T Consensus 81 ~G~~w~~p~yRg~~~~kl~~~~~~~~~~~~~~-N~~~~---~~~~~~~~w~k~~G~~~~~h 137 (181)
T PF06852_consen 81 IGFFWIDPEYRGKGIMKLQDDICMDELDSVDD-NSVAQ---GNVKMSNFWHKMFGFDDYGH 137 (181)
T ss_pred EeeeeeCCcccCcchHHHHHHHHHHHhccCCC-ceeee---cCHHHHHHHHHHhCCCCCcc
Confidence 99999999999999997554544444443332 33333 477889999 5688765544
No 81
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=97.33 E-value=0.0038 Score=53.29 Aligned_cols=93 Identities=13% Similarity=0.220 Sum_probs=69.9
Q ss_pred EEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHH
Q psy837 96 YLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFF 175 (226)
Q Consensus 96 ~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY 175 (226)
++.+..+ ++++|++..+- .+ + |.-+.|++.+||-|+.-.|+.++.+++-+.|...+.+-+- +....||
T Consensus 38 ~v~~~~~-~~~iiacGsia---Gn---v--ikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTK---p~~~~lF 105 (352)
T COG3053 38 FVAIYRD-NEEIIACGSIA---GN---V--IKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTK---PEYAALF 105 (352)
T ss_pred EEEEEcC-CCcEEEecccc---cc---e--eEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEec---hhHHHHH
Confidence 4444444 68999988765 22 2 4457899999999999999999999999999988888753 3446899
Q ss_pred HHCCCeeeccCCCCCCCCCCcccEEEEeeeCCCC
Q psy837 176 YSLNYSVDDTSPEDDNGSSESFCYFILSKKNPRF 209 (226)
Q Consensus 176 ~k~GF~~~~~~p~~~~~~~~~~~y~il~k~l~~~ 209 (226)
+.+||.....-+. ..++|..+-++.
T Consensus 106 k~~GF~~i~~~~~---------~ivlmENs~trl 130 (352)
T COG3053 106 KQCGFSEIASAEN---------VIVLMENSATRL 130 (352)
T ss_pred HhCCceEeeccCc---------eEEEeecCchhH
Confidence 9999998876654 345666654443
No 82
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=97.19 E-value=0.001 Score=58.04 Aligned_cols=84 Identities=10% Similarity=0.001 Sum_probs=64.0
Q ss_pred eEEEEEECCCCCeEEEEEEE---Eee-cCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHH
Q psy837 95 CYLVAKNGSSSTPVAFSHFR---FDV-DFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPD 170 (226)
Q Consensus 95 ~~~~~~~~~~g~ivGf~~~~---~~~-~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~ 170 (226)
.+.++..+ .++++-++.. +-+ ....+..+|..+.+.|+|||+|.-++||.+.....++.|+.-..|+- .
T Consensus 40 n~~vi~~n--qkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~P-----~ 112 (389)
T COG4552 40 NSYVIYMN--QKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALHP-----F 112 (389)
T ss_pred cceEEeeh--hhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEecc-----C
Confidence 34556665 6788876643 111 23456788999999999999999999999988888888987777763 4
Q ss_pred HHHHHHHCCCeeecc
Q psy837 171 GLNFFYSLNYSVDDT 185 (226)
Q Consensus 171 A~~FY~k~GF~~~~~ 185 (226)
..+||+|.||..-.+
T Consensus 113 s~~iYrKfGye~asn 127 (389)
T COG4552 113 SGGIYRKFGYEYASN 127 (389)
T ss_pred chhhHhhccccccce
Confidence 579999999996654
No 83
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=97.07 E-value=0.017 Score=42.87 Aligned_cols=82 Identities=22% Similarity=0.393 Sum_probs=56.1
Q ss_pred CCCeEEEEEEEEe-----ecCC-----cceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHH
Q psy837 104 SSTPVAFSHFRFD-----VDFG-----EPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLN 173 (226)
Q Consensus 104 ~g~ivGf~~~~~~-----~~~~-----~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~ 173 (226)
.|.++|++-.-.. ...+ .+..-|-+++|+++.|++|+|+.|.+.+...- +++--.+.+..-...-++
T Consensus 17 ~g~viG~LKVG~K~Lfl~d~~g~~~e~~~~~cvLDFyVhes~QR~G~Gk~LF~~ML~~e---~~~p~~~a~DrPS~Kll~ 93 (120)
T PF05301_consen 17 KGAVIGFLKVGYKKLFLLDERGQHREIEPLLCVLDFYVHESRQRRGYGKRLFDHMLQEE---NVSPHQLAIDRPSPKLLS 93 (120)
T ss_pred CceEEEEEEEeeeeEEEEcCCCCEEEecccceeeeEEEEeceeccCchHHHHHHHHHHc---CCCcccceecCCcHHHHH
Confidence 3678998753221 1111 23335689999999999999999999986643 333445556667777888
Q ss_pred HHHHCCCeeeccCCCC
Q psy837 174 FFYSLNYSVDDTSPED 189 (226)
Q Consensus 174 FY~k~GF~~~~~~p~~ 189 (226)
|.+|. |......|..
T Consensus 94 Fl~Kh-y~L~~~ipQ~ 108 (120)
T PF05301_consen 94 FLKKH-YGLQRYIPQS 108 (120)
T ss_pred HHHHh-cCCCcCCCCC
Confidence 88876 7777776654
No 84
>KOG2535|consensus
Probab=96.39 E-value=0.0046 Score=53.96 Aligned_cols=48 Identities=23% Similarity=0.488 Sum_probs=40.7
Q ss_pred ccccCCHHHHHHHHHHHHHHh-CCCcEEEEEEcCCCHHHHHHHHHCCCeeec
Q psy837 134 QVQRKGLGKFMMQVLELMAFK-NNMSKVVLTTFKHNPDGLNFFYSLNYSVDD 184 (226)
Q Consensus 134 ~~rgkGlG~~Lm~~l~~~a~~-~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~ 184 (226)
.||.||+|..||+.++.+|+. +|..+|-+-. -.....+|.|+||+.++
T Consensus 498 KfQHQG~GtLLmeEAERIAr~EHgS~KiavIS---GVGtR~YY~klGY~LdG 546 (554)
T KOG2535|consen 498 KFQHQGFGTLLMEEAERIAREEHGSGKIAVIS---GVGTRNYYRKLGYELDG 546 (554)
T ss_pred hhhhcchhhHHHHHHHHHHHHhcCCCceEEEe---ccchHHHHHhhCeeecC
Confidence 599999999999999999987 7888776642 45667899999999875
No 85
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.15 E-value=0.57 Score=38.25 Aligned_cols=129 Identities=12% Similarity=0.119 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCCCCChh----hhhhcccCCCceEEEEEECCCCCeEEEEEEEEeec---------
Q psy837 52 DLDAETKKWVWELEEKNMKHSYEVCDIGWDPQ----GKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVD--------- 118 (226)
Q Consensus 52 ~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~----~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~--------- 118 (226)
...++.+++++.|-.+.+.+ ..+|+-. ....+.-+.+..|+++... +|+|+|++++-.+..
T Consensus 11 ~~~~~~l~em~rlR~~vF~e-----rL~W~v~~~~g~E~DqyD~~~t~Yll~~~~-~g~I~G~~RlLptt~P~mL~~vF~ 84 (209)
T COG3916 11 ELFPKALEEMHRLRYQVFKE-----RLGWDVVCIDGFEIDQYDNLDTVYLLALTS-DGRIVGCVRLLPTTGPYMLTDVFP 84 (209)
T ss_pred hhcHHHHHHHHHHHHHHHHH-----hcCCceeccCCccccccCCCCceEEEEEcC-CCcEEEEEEeccCCCcchhhhhhH
Confidence 44567788888886654443 3456532 3334445567888888655 699999999765421
Q ss_pred ---------CCcceEEEEEEEEcc--ccc---cCC-HHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeee
Q psy837 119 ---------FGEPVLYCYELQLEK--QVQ---RKG-LGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVD 183 (226)
Q Consensus 119 ---------~~~~~~yi~~l~V~~--~~r---gkG-lG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~ 183 (226)
.+..+.....++|+. .-+ +.. ++..||.-+.+++.++|+++|...+ ...-.+.+++.||...
T Consensus 85 ~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~~G~~~IvtVt---~~~meril~r~Gw~~~ 161 (209)
T COG3916 85 ALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALARGITGIVTVT---DTGMERILRRAGWPLT 161 (209)
T ss_pred HHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHHcCCceEEEEE---chHHHHHHHHcCCCeE
Confidence 123466788888886 222 223 3667888899999999999998766 4567788999999988
Q ss_pred ccCCCC
Q psy837 184 DTSPED 189 (226)
Q Consensus 184 ~~~p~~ 189 (226)
...|.-
T Consensus 162 riG~~~ 167 (209)
T COG3916 162 RIGPPL 167 (209)
T ss_pred EcCCce
Confidence 776654
No 86
>KOG2779|consensus
Probab=96.02 E-value=0.019 Score=50.25 Aligned_cols=128 Identities=13% Similarity=0.074 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHHHHHHHH-hhhcCCCCChhhhhhcccCC---CceEEEEEECCCCCeEEEEEEEEe----ecCCcceE
Q psy837 53 LDAETKKWVWELEEKNMKHS-YEVCDIGWDPQGKHSEMFDD---RACYLVAKNGSSSTPVAFSHFRFD----VDFGEPVL 124 (226)
Q Consensus 53 ~~~~~l~~i~~l~~~~~~~~-y~~~~~~w~~~~~~~e~~~~---~~~~~~~~~~~~g~ivGf~~~~~~----~~~~~~~~ 124 (226)
-+.++++++++|+.+|.-+. +....+.+..+.....+..+ ..+.+.++..++.++|||++.... .+.-..++
T Consensus 89 ~~~~~l~el~~lL~enyVEd~~~m~rf~Ys~eFl~Wal~~pg~~~~WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~v 168 (421)
T KOG2779|consen 89 SDFKDLEELYNLLNENYVEDDDSMFRFDYSPEFLKWALQPPGWKKEWHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMV 168 (421)
T ss_pred ccHhHHHHHHhhcccCCCCccccchhhhccHHHHHhhhcCCCCccceEEEEEEecCCceEEEEeccccEEEEccceeeee
Confidence 35678899999887765432 22223456666666666554 466677776656899999986532 23445688
Q ss_pred EEEEEEEccccccCCHHHHHHHHHHHHHHhCCC-cEEE--EEEcCCCHHHHHHH-HHCCC
Q psy837 125 YCYELQLEKQVQRKGLGKFMMQVLELMAFKNNM-SKVV--LTTFKHNPDGLNFF-YSLNY 180 (226)
Q Consensus 125 yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~-~~i~--l~v~~~N~~A~~FY-~k~GF 180 (226)
.|.-++|+...|+++++--|+.++...+.-.|+ +.+. -.|+..+....+.| +.+.-
T Consensus 169 eINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yTaGvvLp~PVstcRY~HRsLNp 228 (421)
T KOG2779|consen 169 EINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYTAGVVLPKPVSTCRYWHRSLNP 228 (421)
T ss_pred eEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhhcceeeccccchhhhhhccCCh
Confidence 899999999999999999999998777655442 1111 13445666777777 34443
No 87
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.13 Score=42.39 Aligned_cols=128 Identities=15% Similarity=0.015 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhcCCCCChh-----hhhhcccCCCceEEEEEECCCCCeEEEEEEEEeecCCcceEEEE
Q psy837 53 LDAETKKWVWELEEKNMKHSYEVCDIGWDPQ-----GKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCY 127 (226)
Q Consensus 53 ~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~-----~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~ 127 (226)
-++.+++...++.. +.|+..+. .....|.......+-+..+ +|++||.+.-.+....+.-..|-+
T Consensus 9 ~dp~el~~~~dV~~---------~aWg~~d~~~~~~d~i~al~~~GGlvlgAf~~-dg~lVGls~G~pg~r~g~~y~ySH 78 (266)
T COG3375 9 TDPAELDEAEDVQA---------SAWGSEDRDGAPADTIRALRYHGGLVLGAFSA-DGRLVGLSYGYPGGRGGSLYLYSH 78 (266)
T ss_pred CCHHHHHHHHHHHH---------HHhCccccccchHHHHHHHHhcCCeEEEEEcC-CCcEEEEEeccCCcCCCceeeeee
Confidence 35677887777653 34553332 1223344445544445555 679999875443222444466777
Q ss_pred EEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHH-HHHCCCeeeccCCCCC
Q psy837 128 ELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNF-FYSLNYSVDDTSPEDD 190 (226)
Q Consensus 128 ~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~F-Y~k~GF~~~~~~p~~~ 190 (226)
.+.|.|++++.|+|-.|=..=.+.+..+|++.|.+|...-|.---+| ..|+|-......++.+
T Consensus 79 ~~gV~e~~k~sglg~aLK~~Qre~a~~~G~tli~WTfDPl~alNA~fNi~KLGa~artYi~nfY 142 (266)
T COG3375 79 MLGVREEVKGSGLGVALKMKQRERALSMGYTLIAWTFDPLNALNARFNISKLGAIARTYIKNFY 142 (266)
T ss_pred ehhccccccccchhhhhHHHHHHHHHhcCeeeEEEecccchhhhhhcchhhhceeEEEeecccc
Confidence 89999999999999999666678888999999999987766543334 3789987776677665
No 88
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=95.93 E-value=0.21 Score=43.69 Aligned_cols=120 Identities=10% Similarity=0.073 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCChhhhh--hcccCCCceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEEccc
Q psy837 57 TKKWVWELEEKNMKHSYEVCDIGWDPQGKH--SEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQ 134 (226)
Q Consensus 57 ~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~--~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~ 134 (226)
+++..++++..+|...- .. ....+... .+...+....+++... +|++||.+.+. ..+. .++.+...-+++
T Consensus 159 ~l~~F~~l~~~t~~r~g--~p-~~~~~~f~~l~~~~~~~~~l~~a~~~-~g~~va~~l~~---~~~~-~~~~~~~g~~~~ 230 (330)
T TIGR03019 159 DLDRFYDVYAENMRDLG--TP-VFSRRYFRLLKDVFGEDCEVLTVRLG-DGVVASAVLSF---YFRD-EVLPYYAGGLRE 230 (330)
T ss_pred cHHHHHHHHHHHHhcCC--CC-CCCHHHHHHHHHhcccCEEEEEEEeC-CCCEEEEEEEE---EeCC-EEEEEeccChHH
Confidence 48999999988886432 11 12222211 1112334555555533 48888875543 2222 344445667899
Q ss_pred cccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeec
Q psy837 135 VQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDD 184 (226)
Q Consensus 135 ~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~ 184 (226)
++..+-+..|+-.+...|.+.|++...+.....+.+..+|=++.||+...
T Consensus 231 ~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G~~~~~ 280 (330)
T TIGR03019 231 ARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWGFEPQP 280 (330)
T ss_pred HHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCCCeecc
Confidence 99999999999999999999999999987665566666777888998553
No 89
>KOG4601|consensus
Probab=95.63 E-value=0.26 Score=40.72 Aligned_cols=117 Identities=13% Similarity=0.148 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCChhhhhh-ccc-CCCce-EEEEEECC--CCCeEEEEEEE------Eeec---CCcc
Q psy837 57 TKKWVWELEEKNMKHSYEVCDIGWDPQGKHS-EMF-DDRAC-YLVAKNGS--SSTPVAFSHFR------FDVD---FGEP 122 (226)
Q Consensus 57 ~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~-e~~-~~~~~-~~~~~~~~--~g~ivGf~~~~------~~~~---~~~~ 122 (226)
+..|+..-...++..+- ...-||....... .+. ++... |++..+.. .+.+.||+... ++.+ ....
T Consensus 29 ~~~~~v~eiId~LgklS-Akaq~l~~piTsadKl~~sd~~vvy~~kd~~a~~ks~l~GllKVG~KkLfl~D~~~~~ye~e 107 (264)
T KOG4601|consen 29 KRYWAVAEIIDCLGKLS-AKAQGLKRPITSADKLVDSDEEVVYYIKDEKANGKSILKGLLKVGYKKLFLTDNEQNQYEEE 107 (264)
T ss_pred chhHHHHHHHHHHHHhh-HHHhccccccchHHHhhcCcceEEEEEeecccCcchheeeeehccceeEEEeccHhhhhccC
Confidence 34444444444555443 2234666544433 332 33333 34433321 24688887532 2211 1234
Q ss_pred eEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHH
Q psy837 123 VLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYS 177 (226)
Q Consensus 123 ~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k 177 (226)
.+-|-+++|+++.|++|.|+.|++++.+. .+..---|.+..-...-+.|.+|
T Consensus 108 ~lcILDFyVheS~QR~G~G~~lfdyMl~k---E~vephQ~a~DrPS~kLl~Fm~k 159 (264)
T KOG4601|consen 108 ALCILDFYVHESEQRSGNGFKLFDYMLKK---ENVEPHQCAFDRPSAKLLQFMEK 159 (264)
T ss_pred CceEEEEEeehhhhhcCchHHHHHHHHHh---cCCCchheeccChHHHHHHHHHH
Confidence 56688999999999999999999998653 34444445555555556778754
No 90
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=95.62 E-value=0.21 Score=37.86 Aligned_cols=68 Identities=12% Similarity=0.113 Sum_probs=50.1
Q ss_pred CceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcC
Q psy837 93 RACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFK 166 (226)
Q Consensus 93 ~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~ 166 (226)
...++-.+.+ |++||.+.+.. .+++...+|. +-+|++...++|+..+-.-.++|++.|+..+.|.-..
T Consensus 38 ~t~~~~~~~~--~kLiav~v~D~-l~~glSaVY~---fyDPd~~~~SlG~~~iL~eI~~a~~~~l~y~YLGY~I 105 (128)
T PF04377_consen 38 GTYHLEYRLD--GKLIAVAVVDI-LPDGLSAVYT---FYDPDYSKRSLGTYSILREIELARELGLPYYYLGYWI 105 (128)
T ss_pred CCEEEEEEeC--CeEEEEEEeec-ccchhhheee---eeCCCccccCcHHHHHHHHHHHHHHcCCCEEeeCeEe
Confidence 3444444444 99999876653 3555556664 4699999999999988888899999999888774433
No 91
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=95.28 E-value=0.098 Score=42.09 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=36.1
Q ss_pred ceEEEEEECCCC-CeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCC
Q psy837 94 ACYLVAKNGSSS-TPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNN 156 (226)
Q Consensus 94 ~~~~~~~~~~~g-~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g 156 (226)
.-|++...+++| .++||.+=.-...+ .--+.=|.|.|.||++|+|+.|++.--.+++..+
T Consensus 53 ~FYVl~e~d~~g~h~vGyFSKEk~s~~---~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 53 LFYVLTEKDDDGFHIVGYFSKEKESWD---NNNLSCILTLPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESS-TT----EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEEecCccceeEEEEEEEecccC---CeeEeehhhcchhhhcchhhhhhhhHHHHhhccC
Confidence 334554444122 37777543211111 1223447899999999999999999877887654
No 92
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=95.12 E-value=0.21 Score=41.95 Aligned_cols=70 Identities=16% Similarity=0.206 Sum_probs=51.8
Q ss_pred ceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCH
Q psy837 94 ACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNP 169 (226)
Q Consensus 94 ~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~ 169 (226)
..++-.+.+ |++||.+.+.. .+++...+|. +-+|++-..++|+..+-.-.++|++.|+..+.|.-...+-
T Consensus 144 t~~~ey~~~--g~LiaVav~D~-l~d~lSAVY~---FyDPd~~~~SLG~~~iL~qI~~ak~~gl~y~YLGY~I~~c 213 (240)
T PRK01305 144 TRFIEFRGD--GKLVAVAVTDV-LDDGLSAVYT---FYDPDEEHRSLGTFAILWQIELAKRLGLPYVYLGYWIKGS 213 (240)
T ss_pred cEEEEEEeC--CeEEEEEEEec-cCCceeeEEE---eeCCCccccCCHHHHHHHHHHHHHHcCCCeEeeeEEECCC
Confidence 344444444 99999887643 3566656664 4699999999999998888899999999988886554443
No 93
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=95.11 E-value=0.073 Score=45.16 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCCCCCCCcccEEEEeeeCCC
Q psy837 138 KGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDDNGSSESFCYFILSKKNPR 208 (226)
Q Consensus 138 kGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~~~~~~~~~y~il~k~l~~ 208 (226)
.|-...|+..+...|++.|+.+|..-|... +..+|++.||...+..|.+.. | .|.++|+|-+..
T Consensus 20 ~~~~~~~~~~~~~~a~~~~~~ki~~~~~~~---~~~~~~~~g~~~e~~i~~~f~--g--~~~~~~~~~~~~ 83 (266)
T TIGR03827 20 GNDVEALIPDLDALAKKEGYTKIIAKVPGS---DKPLFEERGYLEEAKIPGYFN--G--HDAYFMSKYLDE 83 (266)
T ss_pred CccHHHHHHHHHHHHHHcCCcEEEEEccHH---HHHHHHHCCCeEEEecccccC--C--CceEEEEEcCch
Confidence 344788999999999999999999988654 478999999999999999873 3 367899998854
No 94
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=94.87 E-value=0.042 Score=37.07 Aligned_cols=28 Identities=11% Similarity=0.105 Sum_probs=24.0
Q ss_pred EEEEEEEEccccccCCHHHHHHHHHHHH
Q psy837 124 LYCYELQLEKQVQRKGLGKFMMQVLELM 151 (226)
Q Consensus 124 ~yi~~l~V~~~~rgkGlG~~Lm~~l~~~ 151 (226)
+=|..|-|+|.+|++||++.||+.+...
T Consensus 6 ~GI~RIWV~~~~RR~GIAt~Lld~ar~~ 33 (70)
T PF13880_consen 6 CGISRIWVSPSHRRKGIATRLLDAAREN 33 (70)
T ss_pred EEeEEEEeChhhhhhhHHHHHHHHHHHh
Confidence 4467888999999999999999987654
No 95
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=94.73 E-value=0.3 Score=35.30 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=47.4
Q ss_pred CCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHH
Q psy837 105 STPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFF 175 (226)
Q Consensus 105 g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY 175 (226)
+...|.+.+.... .+..+.||.-+.|.+..||+|+|..|++.+..- ..++.+.+...|+. .++|
T Consensus 17 e~y~~~aIvt~~~-~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d-----~~~L~Wrsr~~n~~-n~Wy 80 (99)
T cd04264 17 EGYNAAAIVTYEG-VNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRD-----FPKLFWRSRKTNPI-NPWY 80 (99)
T ss_pred CCceEEEEEeccC-CCCCceEEEEEEEchhhhhcChHHHHHHHHHhh-----CCceEEEeCCCCcc-cceE
Confidence 4466666665221 134689999999999999999999999988654 35788888877764 3555
No 96
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=93.98 E-value=1.8 Score=44.21 Aligned_cols=113 Identities=17% Similarity=0.164 Sum_probs=70.2
Q ss_pred EEEEEeeCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCChh-hhhhcccCCCceEEEEEECCCCCeEEEEEEEEeecCCc
Q psy837 43 LVIEYKKSTDLDAETKKWVWELEEKNMKHSYEVCDIGWDPQ-GKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGE 121 (226)
Q Consensus 43 ~~i~~~~~~~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~-~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~ 121 (226)
+++++.+..+++++.++++-.+..+.....- .-|+.-. -...+....+...+.+.+. +|+++||+.+.... .
T Consensus 371 ~t~~i~~~~~~~~~~~~~L~~isd~Wl~~~~---EkGFSm~LGr~~~~~~~~~~i~~a~d~-~G~i~af~s~~p~~---~ 443 (1094)
T PRK02983 371 YTVRIRRHRDLPAEEMAQVIARADAWRDTET---ERGFSMALGRLGDPADGDCLLVEAHDA-DGQVVALLSFVPWG---R 443 (1094)
T ss_pred CEEEEeeCCCCCHHHHHHHHHHHHHHhcCCC---CCceeeecCcccchhcCceEEEEEECC-CCeEEEEEEEeeeC---C
Confidence 4455555678888788887777666554321 1122100 0011122333333334444 69999999998532 2
Q ss_pred ceEEEEEEEEc-cccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Q psy837 122 PVLYCYELQLE-KQVQRKGLGKFMMQVLELMAFKNNMSKVVLTT 164 (226)
Q Consensus 122 ~~~yi~~l~V~-~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v 164 (226)
..+..+++-. |+. =.|+-..|+..+...+++.|++.+.|..
T Consensus 444 -~g~slDLMRr~pda-pnGvmE~L~~~l~~~~k~~G~~~~sLg~ 485 (1094)
T PRK02983 444 -RGLSLDLMRRSPDA-PNGVIELMVAELALEAESLGITRISLNF 485 (1094)
T ss_pred -CCEEEEecccCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEech
Confidence 2344455554 454 6999999999999999999999999854
No 97
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=93.74 E-value=0.23 Score=42.48 Aligned_cols=58 Identities=17% Similarity=0.140 Sum_probs=36.6
Q ss_pred EEEEEECC-CCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCC
Q psy837 96 YLVAKNGS-SSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNN 156 (226)
Q Consensus 96 ~~~~~~~~-~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g 156 (226)
|++...++ ...+|||-+=.-...++. . +.=|.+.|.||++|+|+.|++.--.+++..|
T Consensus 130 YVl~e~d~~g~h~vGYFSKEK~s~~~n-N--LaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 130 YVMTEVDDHGSHIVGYFSKEKVSAEDY-N--LACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred EEEEEecCCCcEEEEEeceeccccCCC-c--EEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 44444431 245888754321111111 1 3346899999999999999999888887654
No 98
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=93.35 E-value=2.6 Score=37.72 Aligned_cols=127 Identities=10% Similarity=0.114 Sum_probs=72.3
Q ss_pred EEEEEeeCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcc---cCCCceEEEEEECCCCCeEEEEEEEEeecC
Q psy837 43 LVIEYKKSTDLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEM---FDDRACYLVAKNGSSSTPVAFSHFRFDVDF 119 (226)
Q Consensus 43 ~~i~~~~~~~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~---~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~ 119 (226)
++++..+..++++++++.++.++..+..... ..++-.......+ ..+....+++..+ |++||++.+-..
T Consensus 200 i~~~~l~G~~i~~~~~~~f~~~Y~~Ty~k~~---~~~yLt~~FF~~l~~~m~~~~~l~~A~~~--g~~Va~aL~l~~--- 271 (370)
T PF04339_consen 200 IRIRTLTGDEITDEDWDRFYRLYQNTYAKRW---GRPYLTREFFEQLAETMPEQVVLVVARRD--GQPVAFALCLRG--- 271 (370)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHhhC---CChhhcHHHHHHHHHhCcCCEEEEEEEEC--CeEEEEEEEEEe---
Confidence 4577778889999999999999987665442 1223222222222 2234434444444 999999866522
Q ss_pred CcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeecc
Q psy837 120 GEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDT 185 (226)
Q Consensus 120 ~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~ 185 (226)
...+|-.......++.+.=.=. ..=..+++|.++|++.+.....-..+ ...||....+
T Consensus 272 -~~~LyGRYwG~~~~~~~LHFe~-cYYq~Ie~aI~~Gl~~f~~GaqGEHK------~~RGf~P~~t 329 (370)
T PF04339_consen 272 -DDTLYGRYWGCDEEIPFLHFEL-CYYQGIEYAIEHGLRRFEPGAQGEHK------IARGFEPVPT 329 (370)
T ss_pred -CCEEEEeeecccccccCcchHH-HHHHHHHHHHHcCCCEEECCcchhHH------HHcCCccccc
Confidence 2255544444455554322111 12235788888999886665322111 2568876544
No 99
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.18 E-value=0.12 Score=47.24 Aligned_cols=77 Identities=9% Similarity=0.148 Sum_probs=62.4
Q ss_pred CCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEc--CCCHHHHHHHHHCCCe
Q psy837 104 SSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTF--KHNPDGLNFFYSLNYS 181 (226)
Q Consensus 104 ~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~--~~N~~A~~FY~k~GF~ 181 (226)
+.-+||++++. -.+ ....|..+..+=..=|+++-..||..+++.|...|...|+..-. +.|.+-..||+++||+
T Consensus 471 DnGiigvviv~---kk~-~~w~IDt~lmSCRVlgRkvE~~l~~~~~e~A~~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~ 546 (574)
T COG3882 471 DNGIIGVVIVE---KKE-SEWFIDTFLMSCRVLGRKVEQRLMNSLEEQALSEGINTIRGYYIPTEKNAPVSDFYERMGFK 546 (574)
T ss_pred cCceEEEEEEE---ecC-CeEEhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEecccccCCcHHHHHHHhccc
Confidence 35699998886 222 35666667777777799999999999999999999999998653 5788999999999999
Q ss_pred eec
Q psy837 182 VDD 184 (226)
Q Consensus 182 ~~~ 184 (226)
+.+
T Consensus 547 l~~ 549 (574)
T COG3882 547 LKG 549 (574)
T ss_pred ccc
Confidence 554
No 100
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=93.15 E-value=0.78 Score=33.11 Aligned_cols=49 Identities=18% Similarity=0.261 Sum_probs=39.6
Q ss_pred cceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHH
Q psy837 121 EPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFF 175 (226)
Q Consensus 121 ~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY 175 (226)
..+.||.-+.|.+..||+|+|..|++.+..-. .++.+.+...|+. .++|
T Consensus 32 ~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~-----~~L~Wrsr~~n~~-n~Wy 80 (99)
T cd04265 32 DGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF-----PKLFWRSRSTNPI-NPWY 80 (99)
T ss_pred CCceEEEEEEEchhhhhcChHHHHHHHHHhhC-----CceEEEeCCCCcc-cceE
Confidence 35899999999999999999999999886543 4688888877764 3554
No 101
>KOG3698|consensus
Probab=92.90 E-value=0.75 Score=43.04 Aligned_cols=67 Identities=18% Similarity=0.130 Sum_probs=54.3
Q ss_pred EccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCCCCCCCcccEEEEeee
Q psy837 131 LEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDDNGSSESFCYFILSKK 205 (226)
Q Consensus 131 V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~~~~~~~~~y~il~k~ 205 (226)
+..+.---|+.+.||+.+....+.+|.....++|.....+-++||.++||.-...+.-. +..||-++
T Consensus 824 ~~~~a~D~~~~k~m~~vll~tL~aNGsrGaf~~V~~dD~~~~~fys~lG~~d~~~~e~~--------~~~i~Gr~ 890 (891)
T KOG3698|consen 824 FGMDASDAHPMKKMIQVLLVTLAANGSRGAFLTVAIDDIERQKFYSELGLTDLGLSECQ--------RFRIFGRT 890 (891)
T ss_pred cccccccchHHHHHHHHHHHHHHhcCCcceeEEechhHHHHHHHHHHhchHHHhHhhcc--------eEEEeccc
Confidence 44455577899999999998888999999999999999999999999999876655422 56666554
No 102
>PLN03239 histone acetyltransferase; Provisional
Probab=92.54 E-value=0.33 Score=42.71 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=25.4
Q ss_pred EEEEEccccccCCHHHHHHHHHHHHHHhCC
Q psy837 127 YELQLEKQVQRKGLGKFMMQVLELMAFKNN 156 (226)
Q Consensus 127 ~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g 156 (226)
.=|.+.|.||++|+|+.|++.--.+++..|
T Consensus 217 aCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 217 ACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred EEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 346899999999999999999877777654
No 103
>PTZ00064 histone acetyltransferase; Provisional
Probab=92.02 E-value=0.36 Score=44.32 Aligned_cols=49 Identities=16% Similarity=0.075 Sum_probs=32.5
Q ss_pred CCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCC
Q psy837 105 STPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNN 156 (226)
Q Consensus 105 g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g 156 (226)
-.+|||..=.-...++. . +.=|.+.|.||++|+|+.|++.--.+++..|
T Consensus 369 ~HiVGYFSKEK~S~~~n-N--LACILtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 369 CHIVGYFSKEKVSLLHY-N--LACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred cEEEEEecccccCcccC-c--eEEEEecchhhhcchhhhhhhhhhhhhhhcC
Confidence 35888754221111111 1 3346899999999999999999777776654
No 104
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=91.34 E-value=0.62 Score=40.07 Aligned_cols=117 Identities=16% Similarity=0.112 Sum_probs=59.4
Q ss_pred CCceEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcccCCCceEEEEEECCCCCeEEEEEEEEeec
Q psy837 39 NGLDLVIEYKKSTDLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVD 118 (226)
Q Consensus 39 ~g~~~~i~~~~~~~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~ 118 (226)
+|.. ++..+..++++++.+.|..+........ +....+... .........+.+.+++... +|+++||+.+.....
T Consensus 129 ~G~~--~~~~~~~~~~~~~~~el~~i~~~W~~~~-~~~e~~~~~-~~~~~~~~~~~~~~~~~~~-dgki~af~~~~~~~~ 203 (299)
T PF09924_consen 129 EGYT--FEVVPIPELDPELRDELLEISDEWLKEK-ERPERGFIM-GALEHFDELGLRGFVARVA-DGKIVAFAIGSPLGG 203 (299)
T ss_dssp H--T---EEEE-----GGGHHHHHHHHHHHHHHC-THHHHHHHH-HHHHTHHHHT-EEEEEEE--TTEEEEEEEEEEEE-
T ss_pred CceE--EEEEECCCCCHHHHHHHHHHHHHHHhcC-chhHHHHHh-ccccchhhcCceEEEEEEC-CCcEEEEEEEEEccC
Confidence 4544 4444455667788888888877665542 100000000 0001111225667778873 399999999985542
Q ss_pred CCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Q psy837 119 FGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLT 163 (226)
Q Consensus 119 ~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~ 163 (226)
...++.++.-...--=+|+-..|+..+...+++.|++.|-|.
T Consensus 204 ---~~~~~~~~~k~~~~a~~G~~e~l~~~~~~~~~~~g~~~lnLg 245 (299)
T PF09924_consen 204 ---RDGWSIDFEKADPDAPKGIYEFLNVEFAEHLKAEGVEYLNLG 245 (299)
T ss_dssp ---TTEEEEEEEEE-TT-STTHHHHHHHHHHHHS--TT--EEE--
T ss_pred ---CccEEEEEEecCCCCCCcHHHHHHHHHHHhhhhCCceEEEcc
Confidence 234444444433223589999999999999998899888753
No 105
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=91.32 E-value=5.7 Score=34.40 Aligned_cols=91 Identities=12% Similarity=0.131 Sum_probs=69.6
Q ss_pred CceEEEEEECCCCCeEEEEEEEEeecC---CcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhC---------C-CcE
Q psy837 93 RACYLVAKNGSSSTPVAFSHFRFDVDF---GEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKN---------N-MSK 159 (226)
Q Consensus 93 ~~~~~~~~~~~~g~ivGf~~~~~~~~~---~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~---------g-~~~ 159 (226)
....++++++ .+|+.+.+..+.+. ..-++-|..|+|..=|..-|+=..|++++...+++. | -=+
T Consensus 169 ~NT~IIvYRe---tPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ 245 (304)
T PF11124_consen 169 KNTHIIVYRE---TPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIK 245 (304)
T ss_pred CcceEEEEcC---CceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEE
Confidence 3445777764 79999999866442 334677899999999999999999999986555541 1 124
Q ss_pred EEEEEcCCCHHHHHHHHHCCCeeeccC
Q psy837 160 VVLTTFKHNPDGLNFFYSLNYSVDDTS 186 (226)
Q Consensus 160 i~l~v~~~N~~A~~FY~k~GF~~~~~~ 186 (226)
+.++|++....-.++.++.||+....+
T Consensus 246 ll~d~YSFD~~~~k~L~~~gF~~i~ss 272 (304)
T PF11124_consen 246 LLVDVYSFDKDMKKTLKKKGFKKISSS 272 (304)
T ss_pred EEEEeeeccHHHHHHHHHCCCeeeecc
Confidence 666788999999999999999988743
No 106
>KOG2036|consensus
Probab=90.82 E-value=1.2 Score=42.89 Aligned_cols=31 Identities=16% Similarity=0.106 Sum_probs=27.0
Q ss_pred eEEEEEEEEccccccCCHHHHHHHHHHHHHH
Q psy837 123 VLYCYELQLEKQVQRKGLGKFMMQVLELMAF 153 (226)
Q Consensus 123 ~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~ 153 (226)
-+.|..|.|+|+|++.|+|+..++.+..+..
T Consensus 614 GaRIVRIAvhP~y~~MGYGsrAvqLL~~y~e 644 (1011)
T KOG2036|consen 614 GARIVRIAVHPEYQKMGYGSRAVQLLTDYFE 644 (1011)
T ss_pred CceEEEEEeccchhccCccHHHHHHHHHHHh
Confidence 3457889999999999999999999988764
No 107
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=90.78 E-value=1.1 Score=39.02 Aligned_cols=113 Identities=14% Similarity=0.065 Sum_probs=73.7
Q ss_pred EEEEeeCCCCCHHHHHHHHHHHHHHHHH-HhhhcCCCCChhhhhhcccCC---CceEEEEEECCCCCeEEEEEEEEe---
Q psy837 44 VIEYKKSTDLDAETKKWVWELEEKNMKH-SYEVCDIGWDPQGKHSEMFDD---RACYLVAKNGSSSTPVAFSHFRFD--- 116 (226)
Q Consensus 44 ~i~~~~~~~~~~~~l~~i~~l~~~~~~~-~y~~~~~~w~~~~~~~e~~~~---~~~~~~~~~~~~g~ivGf~~~~~~--- 116 (226)
+++-....-.+..+++.++.++.+|.-+ .|....+.+..+..+..+..+ ..+.+.++.....++|||+.....
T Consensus 78 efewc~idv~N~~ql~dv~~lL~eNYVED~~ag~rf~Y~~EFl~Wal~~pg~kK~whigvRvk~t~klVaFIsa~p~~v~ 157 (451)
T COG5092 78 EFEWCVIDVANKKQLEDVFVLLEENYVEDIYAGHRFRYSVEFLQWALDGPGGKKRWHIGVRVKGTQKLVAFISAKPHLVS 157 (451)
T ss_pred hhceeeEeccccchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhcCCCCceeeEEEEEEcccceeEEEEecceeEEE
Confidence 3333333445567889999998877644 332222233334444444443 345566665534689999875532
Q ss_pred -ecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCC
Q psy837 117 -VDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNN 156 (226)
Q Consensus 117 -~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g 156 (226)
-....+++.+.-++|+.+.|++-+.-.|++.+...|..-|
T Consensus 158 vRgK~~~~~evNFLCihk~lRsKRltPvLIkEiTRR~n~~~ 198 (451)
T COG5092 158 VRGKRSSVLEVNFLCIHKELRSKRLTPVLIKEITRRANVDG 198 (451)
T ss_pred EcccccccceEEEEEEehhhhhCccchHHHHHHHHhhhhhh
Confidence 1344568889999999999999999999999888776544
No 108
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=90.74 E-value=0.35 Score=44.06 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=32.3
Q ss_pred CCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCC
Q psy837 105 STPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNN 156 (226)
Q Consensus 105 g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g 156 (226)
-.+|||.+=.-...++. . |.=|.+.|.||++|+|+.|++.--.+++..|
T Consensus 291 ~h~vGyFSKEk~s~~~~-N--LaCIltlP~yQrkGyG~~LI~~SYeLSr~eg 339 (450)
T PLN00104 291 CHMVGYFSKEKHSEEDY-N--LACILTLPPYQRKGYGKFLIAFSYELSKREG 339 (450)
T ss_pred cEEEEEecccccCcCCC-c--eEEEEecchhhhcchhheehhheehhhhccC
Confidence 36888754321111111 1 3346899999999999999998777776544
No 109
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=90.38 E-value=1.3 Score=31.77 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=39.6
Q ss_pred ccCCCceEEEEEECCCCCeEEEEEEEEeecC--------------------CcceEEEEEEEEccccccCCHHHHHH
Q psy837 89 MFDDRACYLVAKNGSSSTPVAFSHFRFDVDF--------------------GEPVLYCYELQLEKQVQRKGLGKFMM 145 (226)
Q Consensus 89 ~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~--------------------~~~~~yi~~l~V~~~~rgkGlG~~Lm 145 (226)
-+++.+.++++.+..+ ++||.+.+...... ...++.+..++|+|+||+...-..|.
T Consensus 25 ~fD~~~~h~lv~~~~~-~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 25 EFDEHSVHLLVRDKNT-EVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CCCCCccEEEEEECCC-CEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 3456777788877622 59999987643221 13577889999999999887766654
No 110
>PHA00432 internal virion protein A
Probab=89.33 E-value=4.4 Score=30.96 Aligned_cols=75 Identities=13% Similarity=0.207 Sum_probs=45.1
Q ss_pred CCCeEEEEEEEEeecCCcceEEEEEEEEccc--cccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCe
Q psy837 104 SSTPVAFSHFRFDVDFGEPVLYCYELQLEKQ--VQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYS 181 (226)
Q Consensus 104 ~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~--~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~ 181 (226)
+|++++... ..+.++..+..=.|..- ...+..=+.++..+...-+ .+..+.--|.+.|..+++|.+.+||+
T Consensus 45 ~G~~~aI~G-----n~G~~vW~v~T~~v~~~~~~~~reF~k~~~~~ld~ml~--~yp~LwNyV~~~N~~hir~Lk~lGf~ 117 (137)
T PHA00432 45 DGFVLAIGG-----NQGDQVWFVTSDQVWRLTKKEKREFRKLIMEYRDMMLD--QYPSLWNYVWVGNKSHIRFLKSIGAV 117 (137)
T ss_pred CCeEEEEec-----CCCCceEEEecHHhhhCChhhhHHHHHHHHHHHHHHHH--hhhhhheeeecCCHHHHHHHHHcCee
Confidence 488877652 33454444433333321 1112233333444433333 35678888999999999999999999
Q ss_pred eecc
Q psy837 182 VDDT 185 (226)
Q Consensus 182 ~~~~ 185 (226)
.+..
T Consensus 118 f~~e 121 (137)
T PHA00432 118 FHNE 121 (137)
T ss_pred eecc
Confidence 8866
No 111
>PHA01733 hypothetical protein
Probab=88.56 E-value=2.6 Score=32.83 Aligned_cols=80 Identities=6% Similarity=-0.044 Sum_probs=47.3
Q ss_pred CCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHH-hCCCcEEEEEEcCCCHHHHHHHHHCCCee
Q psy837 104 SSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAF-KNNMSKVVLTTFKHNPDGLNFFYSLNYSV 182 (226)
Q Consensus 104 ~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~-~~g~~~i~l~v~~~N~~A~~FY~k~GF~~ 182 (226)
+|+++|......+..++.-..+ +.-.+...+ +-+..+..+..+.. ...+..+.--|.+.|..|++|.+.+||+.
T Consensus 55 nG~l~aI~Gv~~d~~~~vG~pW---lV~T~~v~k--~~~~f~re~r~~l~e~~~Yp~LwNyV~~~N~~hir~Lk~lGF~f 129 (153)
T PHA01733 55 DGSLAGVAGLVEDMGNRVGEIW---MVCTPAIEK--NPIALLRGAKWWLPKSRNYDLLWNIVDKRNLVHRKLLRKLGFKG 129 (153)
T ss_pred CCcEEEEecccccccCCCCcee---EEecHHhHh--CCHHHHHHHHHHHHHhccccHHHHhHhcccHHHHHHHHHcCcee
Confidence 3788887766532222221222 222222222 22333333322222 45667788889999999999999999999
Q ss_pred eccCCC
Q psy837 183 DDTSPE 188 (226)
Q Consensus 183 ~~~~p~ 188 (226)
+...|-
T Consensus 130 ~~~~~~ 135 (153)
T PHA01733 130 LRYVQP 135 (153)
T ss_pred eccccc
Confidence 987774
No 112
>KOG2747|consensus
Probab=88.27 E-value=0.68 Score=41.41 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=22.6
Q ss_pred EEEEccccccCCHHHHHHHHHHHHHHh
Q psy837 128 ELQLEKQVQRKGLGKFMMQVLELMAFK 154 (226)
Q Consensus 128 ~l~V~~~~rgkGlG~~Lm~~l~~~a~~ 154 (226)
=|.|.|.||++|+|+.|++.--.+.+.
T Consensus 265 CILtLPpyQRkGYGklLIdFSYeLSr~ 291 (396)
T KOG2747|consen 265 CILTLPPYQRKGYGKLLIDFSYELSRR 291 (396)
T ss_pred eeeecChhhhcccchhhhhhhhhhhcc
Confidence 368999999999999999986666654
No 113
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=87.54 E-value=8.5 Score=34.05 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=34.7
Q ss_pred eEEEEEEEEccccccCCHHHHHHHH-HHHHHH--hCCCcEEEEEE---cCCCHHHHHHHHHCCCee
Q psy837 123 VLYCYELQLEKQVQRKGLGKFMMQV-LELMAF--KNNMSKVVLTT---FKHNPDGLNFFYSLNYSV 182 (226)
Q Consensus 123 ~~yi~~l~V~~~~rgkGlG~~Lm~~-l~~~a~--~~g~~~i~l~v---~~~N~~A~~FY~k~GF~~ 182 (226)
+..|..++|+|+||+-|.|+.|-.. +.-+|. +.=-++|+.+. ...| .--.||+.+|-..
T Consensus 121 ~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA~~~~rF~~~viAElrG~~De~-G~SPFWdalG~~F 185 (342)
T PF04958_consen 121 CSELCTLFLDPDYRGGGNGRLLSRSRFLFIAQHRERFADRVIAELRGVSDED-GRSPFWDALGRHF 185 (342)
T ss_dssp SEEEEEEEE-GGGTTSHHHHHHHHHHHHHHHH-GGGS-SEEEEE--B---TT----HHHHHTGGGT
T ss_pred CeeeEEEEECHHHcCCchHHHHHHHHHHHHHhChhhcchheeeeccCCcCCC-CCCchHHHhhccc
Confidence 4446789999999999999999655 333332 23335566543 2333 3458999888553
No 114
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.27 E-value=12 Score=31.41 Aligned_cols=126 Identities=13% Similarity=0.118 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcccCCCceEEEEEEC----CCCCeEEEEEEEEeecCCcceEEEE
Q psy837 52 DLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNG----SSSTPVAFSHFRFDVDFGEPVLYCY 127 (226)
Q Consensus 52 ~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~~~~~~~~~~~~~----~~g~ivGf~~~~~~~~~~~~~~yi~ 127 (226)
..+++.+ .+|.-+..........+..+|.+=....+...-+..++-.... ..|++|+.+... ..+++...+|.
T Consensus 104 ~~s~E~y-~LyrrY~~~rH~~g~m~~~s~~~f~~f~~d~~~~~~~~e~r~~~~~~~~G~LvAVavtD-vL~dGlSsVY~- 180 (253)
T COG2935 104 EYSEEQY-ELYRRYLDQRHADGGMSDMSFKDFAAFLEDTHVNTQLIEYRRRKPGKGEGKLVAVAVTD-VLPDGLSSVYT- 180 (253)
T ss_pred CCCHHHH-HHHHHHHHHHcccCCCCCccHHHHHHHHhccccceeeEEEEecCCCCCCCcEEEEEeee-cccCcceeEEE-
Confidence 4444433 3455444444433322232333222222222234444444431 148888765433 34778778875
Q ss_pred EEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCC
Q psy837 128 ELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPED 189 (226)
Q Consensus 128 ~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~ 189 (226)
+-+|++...+||+.++-.=+.+|++.|...|.|.-+..+-+ |++|+.. -+|.+
T Consensus 181 --FydPd~s~~SLGt~~iL~~I~~aq~~~l~yvYLGYwI~~c~------KM~YKa~-f~P~e 233 (253)
T COG2935 181 --FYDPDMSKRSLGTLSILDQIAIAQRLGLPYVYLGYWIKGCP------KMNYKAR-FSPLE 233 (253)
T ss_pred --EeCCChhhhcchHHHHHHHHHHHHHhCCCeEEEEEEECCcc------ccCcccc-cChHH
Confidence 46999999999999877777889999999999976655543 4566533 24443
No 115
>PRK14852 hypothetical protein; Provisional
Probab=85.77 E-value=16 Score=36.91 Aligned_cols=123 Identities=11% Similarity=0.112 Sum_probs=81.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcc-----cCCCceEEEEEECCCCCeEEEEEEEEeec--------
Q psy837 52 DLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEM-----FDDRACYLVAKNGSSSTPVAFSHFRFDVD-------- 118 (226)
Q Consensus 52 ~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~-----~~~~~~~~~~~~~~~g~ivGf~~~~~~~~-------- 118 (226)
.-+.++++.+|.|... .|-.+ |+......... ..+.+..+++... ++++|.+++..+..
T Consensus 34 Aet~~e~~~~~~L~~~----~Y~~~--Gy~~~~ps~~~~~~~~~lp~t~~~i~k~~--~~~l~T~t~~~ds~~~Gl~~D~ 105 (989)
T PRK14852 34 AETPDEYTRAFRLVYE----EYIRS--GYLKPHPSRMYYNVWSILPATSVFIFKSY--HDVLCTLTHIPDSGLFGLPMDT 105 (989)
T ss_pred cCCHHHHHHHHHHHHH----HHHHc--CCCCcCcccccCCccccCCcceEEEeccC--CcEEEEEEEecCCcccCcCHHH
Confidence 4457899999999743 44322 33322211111 1223332334343 56777776665422
Q ss_pred -----------CCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHH-HCCCeeecc
Q psy837 119 -----------FGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFY-SLNYSVDDT 185 (226)
Q Consensus 119 -----------~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~-k~GF~~~~~ 185 (226)
.+..++.+..+.++++.|.+-+=-.+++.+-.++...+++-+..+| |+.-..||+ -+||+..+.
T Consensus 106 lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~V---nPkH~~FY~r~l~f~~ig~ 181 (989)
T PRK14852 106 LYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTV---NPKHVKFYTDIFLFKPFGE 181 (989)
T ss_pred HHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEE---CcchHHHHHHHhCCccccc
Confidence 2456888899999988887776667778877777778999888888 888899996 799998864
No 116
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=85.50 E-value=4.3 Score=35.78 Aligned_cols=24 Identities=0% Similarity=0.177 Sum_probs=19.9
Q ss_pred EEEEEEEEccccccCCHHHHHHHH
Q psy837 124 LYCYELQLEKQVQRKGLGKFMMQV 147 (226)
Q Consensus 124 ~yi~~l~V~~~~rgkGlG~~Lm~~ 147 (226)
..|..|+|+|+||+-|.|+.|-+.
T Consensus 119 sElctLfL~p~~R~~~~G~lLSr~ 142 (336)
T TIGR03245 119 SLLCSFYVDPRLRKTEAAELLSRA 142 (336)
T ss_pred eeeEEEEECHHHcCCCchhHHHHH
Confidence 345779999999999999988554
No 117
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=85.26 E-value=16 Score=34.34 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=64.5
Q ss_pred EEEEEeeCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcccCC---CceEEEEEECCCCCeEEEEEEEEeecC
Q psy837 43 LVIEYKKSTDLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDD---RACYLVAKNGSSSTPVAFSHFRFDVDF 119 (226)
Q Consensus 43 ~~i~~~~~~~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~~~---~~~~~~~~~~~~g~ivGf~~~~~~~~~ 119 (226)
+++++.+ .+..++.++++-.+-++.....- ..+.++. .- .+++ ....+.+.+. +|+|+||+.+......
T Consensus 345 ~tfeI~~-~~~~~~~l~eL~~iSD~Wl~~~~-~rEkgFs----LG-~fdp~yl~~~~va~~~~-~g~VvaFa~l~~~~~~ 416 (538)
T COG2898 345 LTFEIVP-PDQSPAELDELRAISDEWLDHKT-RREKGFS----LG-FFDPRYLDIFPVAAVDN-EGEVVAFANLMPTGGK 416 (538)
T ss_pred cEEEEeC-CccChHHHHHHHHhCHHhhhcCC-cccceee----cc-CCCccccccceeeEEcC-CCCeEEEEeecccCCc
Confidence 4566655 56677777777776544332110 0111111 11 1222 2222334444 6899999999843322
Q ss_pred CcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Q psy837 120 GEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLT 163 (226)
Q Consensus 120 ~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~ 163 (226)
. ..-+.-+--+|+. =+|+--.|+..+..++++.|++++.|.
T Consensus 417 ~--~~SlDlMR~sp~a-p~g~mdfLf~~li~~aKe~G~~~fsLg 457 (538)
T COG2898 417 E--GYSLDLMRRSPDA-PNGTMDFLFSELILWAKEEGYQRFSLG 457 (538)
T ss_pred c--eeEEEeeecCCCC-CchHHHHHHHHHHHHHHHcCCeEEecC
Confidence 2 2223334445555 389999999999999999999999873
No 118
>KOG2696|consensus
Probab=79.79 E-value=3.2 Score=36.86 Aligned_cols=47 Identities=13% Similarity=0.100 Sum_probs=33.5
Q ss_pred eEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHH
Q psy837 123 VLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPD 170 (226)
Q Consensus 123 ~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~ 170 (226)
..-|..+-+.|.||++|+|..||+.+...... ..+-+-+||...+++
T Consensus 217 R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~-~p~v~DiTVEdPse~ 263 (403)
T KOG2696|consen 217 RPRISQMLILPPFQGKGLGSQLYEAIARDYLE-EPTVLDITVEDPSEA 263 (403)
T ss_pred hhhhheeEEeccccCCchHHHHHHHHHHhhcc-CCceeEEEecCchHH
Confidence 44577889999999999999999988733322 223466777655544
No 119
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=79.58 E-value=6.2 Score=27.66 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeec
Q psy837 140 LGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDD 184 (226)
Q Consensus 140 lG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~ 184 (226)
.-+.++..+...-+. +..+.-.|...|..+++|.+.+|++.+.
T Consensus 41 F~k~i~~~~d~~l~~--Y~~l~N~V~~~N~~HIRfLk~lGA~f~~ 83 (86)
T PF11090_consen 41 FRKLIKEYLDKMLKQ--YPVLWNFVWVGNKSHIRFLKSLGAVFHN 83 (86)
T ss_pred HHHHHHHHHHHHHHH--hhheeEEEEeCCHHHHHHHHhcCcEEcc
Confidence 334444444443333 5668889999999999999999999664
No 120
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=79.58 E-value=6.3 Score=34.72 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=37.0
Q ss_pred CCceEEEEEEC-CCCCeEEEEEEEEeec---------------------------------CCcceEEEEEEEEcccccc
Q psy837 92 DRACYLVAKNG-SSSTPVAFSHFRFDVD---------------------------------FGEPVLYCYELQLEKQVQR 137 (226)
Q Consensus 92 ~~~~~~~~~~~-~~g~ivGf~~~~~~~~---------------------------------~~~~~~yi~~l~V~~~~rg 137 (226)
.+..|++|-++ .+|+++|.+.+.-... +......|..|+|+|+||+
T Consensus 52 ~~~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~ 131 (335)
T TIGR03243 52 GEEGYLFVLEDTETGTVAGVSAIEAAVGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRK 131 (335)
T ss_pred CCccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcC
Confidence 35667766654 3689999887432211 0112334577999999999
Q ss_pred CCHHHHHHHH
Q psy837 138 KGLGKFMMQV 147 (226)
Q Consensus 138 kGlG~~Lm~~ 147 (226)
.|.|+.|-+.
T Consensus 132 ~~~G~LLSr~ 141 (335)
T TIGR03243 132 GGNGRLLSRS 141 (335)
T ss_pred CCchhhHHHH
Confidence 9999988554
No 121
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=77.91 E-value=7.4 Score=34.32 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=19.3
Q ss_pred EEEEEEEccccccCCHHHHHHHH
Q psy837 125 YCYELQLEKQVQRKGLGKFMMQV 147 (226)
Q Consensus 125 yi~~l~V~~~~rgkGlG~~Lm~~ 147 (226)
.|..|+|+|+||+.|.|+.|-+.
T Consensus 119 ElctLfL~p~~R~~~~G~LLSr~ 141 (336)
T TIGR03244 119 ELCTLFLDPDYRKGGNGRLLSKS 141 (336)
T ss_pred eeEEEEECHHHcCCcchhhHHHH
Confidence 35779999999999999988544
No 122
>PRK10456 arginine succinyltransferase; Provisional
Probab=77.80 E-value=7.6 Score=34.34 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=19.4
Q ss_pred EEEEEEEccccccCCHHHHHHHH
Q psy837 125 YCYELQLEKQVQRKGLGKFMMQV 147 (226)
Q Consensus 125 yi~~l~V~~~~rgkGlG~~Lm~~ 147 (226)
.|..|+|+|+||+-|.|+.|-+.
T Consensus 121 ElctLfl~p~~R~~~~G~LLSr~ 143 (344)
T PRK10456 121 ELCTLFLDPDWRKEGNGYLLSKS 143 (344)
T ss_pred eeEEEEECHHHcCCCchhHHHHH
Confidence 35779999999999999988554
No 123
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=77.67 E-value=1.2 Score=40.64 Aligned_cols=63 Identities=10% Similarity=0.079 Sum_probs=42.4
Q ss_pred eEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEE-----EcCCCHHHHHHHHHCCCeeecc
Q psy837 123 VLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLT-----TFKHNPDGLNFFYSLNYSVDDT 185 (226)
Q Consensus 123 ~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~-----v~~~N~~A~~FY~k~GF~~~~~ 185 (226)
..-|-.+.|+|+||+-|||..-|..+.++..+...-..+-. +...-..--.||++.||+....
T Consensus 241 aariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPEmr~rkHlvetiaqmarynpffe~~gfkylwd 308 (593)
T COG2401 241 AARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPEMRPRKHLVETIAQMARYNPFFEKVGFKYLWD 308 (593)
T ss_pred hhheeEEEeccccccCccchhHHHHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCchhhhhceeeeee
Confidence 44578899999999999999999998888776543322211 1111112235999999995543
No 124
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=77.29 E-value=8.1 Score=34.59 Aligned_cols=94 Identities=10% Similarity=0.101 Sum_probs=59.3
Q ss_pred hhhhcccCCCceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEEcccccc-CCHHHHHHHHHHHHHHhCCCcEEEE
Q psy837 84 GKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQR-KGLGKFMMQVLELMAFKNNMSKVVL 162 (226)
Q Consensus 84 ~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rg-kGlG~~Lm~~l~~~a~~~g~~~i~l 162 (226)
.-...+..+-++-++. |.--|.+.+.+.......+.|+.-+.|.+..|| -|||..+...+.+..- +.+.+
T Consensus 366 ~y~~r~~~~La~~iVs-----gdY~g~aIlTyegs~~~~vpYLDKfAVl~~aQGs~gisd~vfniM~e~fP----~eL~W 436 (495)
T COG5630 366 YYETRINTPLARAIVS-----GDYRGAAILTYEGSGENNVPYLDKFAVLDDAQGSEGISDAVFNIMREEFP----NELFW 436 (495)
T ss_pred HHHHhccCcceeEEee-----ccceeeEEEEeeccCCCCCcceeeeeccccccccchHHHHHHHHHHHhCc----Hhhhh
Confidence 3334444454443333 445677766655344557999999999999999 9999999887755432 23555
Q ss_pred EEcCCCHHHHHHH--HHCCCeeeccCC
Q psy837 163 TTFKHNPDGLNFF--YSLNYSVDDTSP 187 (226)
Q Consensus 163 ~v~~~N~~A~~FY--~k~GF~~~~~~p 187 (226)
-....| .+-+|| ++-||-....+|
T Consensus 437 RSR~~N-~vNkwYf~rSvg~lk~~~~~ 462 (495)
T COG5630 437 RSRHNN-QVNKWYFARSVGYLKQKQDH 462 (495)
T ss_pred hhcccC-cchheeeehhhehhhccCCc
Confidence 444444 457777 677765443333
No 125
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=76.05 E-value=32 Score=26.18 Aligned_cols=93 Identities=9% Similarity=-0.016 Sum_probs=60.2
Q ss_pred cCCCceEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHh-CCCcEEEEEEcCCC
Q psy837 90 FDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFK-NNMSKVVLTTFKHN 168 (226)
Q Consensus 90 ~~~~~~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~-~g~~~i~l~v~~~N 168 (226)
..+++.|+=+.+. +.++|+..++.. ...++.|+.++ +|++|| +....-..+..+... ...+.+.--|-..-
T Consensus 34 ~K~~~~Y~gVyeg--~~l~Gi~~v~~i---~~~~vecHa~y-~P~fRG--~a~~~~~~F~kwlL~Ns~f~~vit~vp~kt 105 (151)
T PF11039_consen 34 IKPDQLYLGVYEG--GQLGGIVYVEEI---QPSVVECHAMY-DPGFRG--YALEIGRLFCKWLLENSPFQNVITFVPDKT 105 (151)
T ss_pred ecCccEEEEEEec--eEEEEEEEEEEE---eeeeEEEEeee-ccccch--hHHHHHHHHHHHHhcCCceeEEEEeccccc
Confidence 4567788878776 889999888733 33467787776 899998 777665555555544 34554444443333
Q ss_pred HHHHHHHHHCCCeeeccCCCCC
Q psy837 169 PDGLNFFYSLNYSVDDTSPEDD 190 (226)
Q Consensus 169 ~~A~~FY~k~GF~~~~~~p~~~ 190 (226)
.-..-.-+-+|-+.++......
T Consensus 106 ~~Grvic~llg~~RVG~id~~~ 127 (151)
T PF11039_consen 106 RYGRVICRLLGARRVGHIDDYF 127 (151)
T ss_pred ccchhHhhhhCCceeeeHHHHh
Confidence 3333333677888887776655
No 126
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=74.12 E-value=1.9 Score=37.94 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=19.7
Q ss_pred EEEEccccccCCHHHHHHHHHHHHH
Q psy837 128 ELQLEKQVQRKGLGKFMMQVLELMA 152 (226)
Q Consensus 128 ~l~V~~~~rgkGlG~~Lm~~l~~~a 152 (226)
=|-+.|.||++|+|+.|++.--.+.
T Consensus 267 CILtLP~yQRrGYG~lLIdFSY~Ls 291 (395)
T COG5027 267 CILTLPPYQRRGYGKLLIDFSYLLS 291 (395)
T ss_pred EEEecChhHhcccceEeeeeeeecc
Confidence 3579999999999999988743333
No 127
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=72.34 E-value=35 Score=24.96 Aligned_cols=49 Identities=14% Similarity=0.346 Sum_probs=39.4
Q ss_pred cceEEEEEEEEcccccc-CCHHHHHHHHHHHHHHhCCCc-EEEEEEcCCCHHHHHHH
Q psy837 121 EPVLYCYELQLEKQVQR-KGLGKFMMQVLELMAFKNNMS-KVVLTTFKHNPDGLNFF 175 (226)
Q Consensus 121 ~~~~yi~~l~V~~~~rg-kGlG~~Lm~~l~~~a~~~g~~-~i~l~v~~~N~~A~~FY 175 (226)
..+.||.-+.|.+..|| .|++..+.+.+.. ... .+.+.+...|+. .++|
T Consensus 37 ~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~-----~fp~~L~Wrsr~~n~~-n~Wy 87 (108)
T cd04266 37 EKIAYLDKFAVLPKAQGSDGIADILFNAMLD-----GFPNELIWRSRKDNPV-NKWY 87 (108)
T ss_pred CCceEEEEEEEccccccccchHHHHHHHHHH-----cCCCceEEEeCCCCcc-cceE
Confidence 56899999999999997 8999999998766 233 388888877764 4666
No 128
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=64.46 E-value=52 Score=26.06 Aligned_cols=113 Identities=13% Similarity=0.082 Sum_probs=63.9
Q ss_pred CCCHH-HHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcccCCCceEEEEEECCCCCeEEEEEEEEee-cCCcceEEEEEE
Q psy837 52 DLDAE-TKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFSHFRFDV-DFGEPVLYCYEL 129 (226)
Q Consensus 52 ~~~~~-~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~~~~~~~~~~~~~~~g~ivGf~~~~~~~-~~~~~~~yi~~l 129 (226)
.++.- +++.+..++.... .. .-+...-...+..... -+..+ +..-|.+.+.+.. ....++.||--+
T Consensus 27 s~~~~~d~~kL~~ll~~sf----~~---~~~v~~yl~~l~~~~~--~iy~d---~~y~~~AIVt~e~~~~~~~v~yLdKF 94 (170)
T PF04768_consen 27 SLSEFVDLDKLRALLERSF----GG---KLDVDHYLDRLNNRLF--KIYVD---EDYEGAAIVTPEGPDSNGPVPYLDKF 94 (170)
T ss_dssp SCCCSS-HHHHHHHHHHHS----TS---SSBHTTHHHHHHTS-S--EEEEE---TTSSEEEEEEEE-SCTCTSEEEEEEE
T ss_pred CccccCCHHHHHHHHHhcc----cc---cccHHHHHHHhhccce--EEEEe---CCceEEEEEEecCCCCCCCCeEEEEE
Confidence 44444 7888888876543 00 0111112223322222 22223 3344555554432 334469999999
Q ss_pred EEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHH--HHCCCee
Q psy837 130 QLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFF--YSLNYSV 182 (226)
Q Consensus 130 ~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY--~k~GF~~ 182 (226)
.|.+..||.|++-.+.+.+..-. .++.+.+...|+ -.++| +.-|+-.
T Consensus 95 av~~~~~g~gv~D~vf~~i~~d~-----p~L~Wrsr~~n~-~~~Wyf~rs~G~~~ 143 (170)
T PF04768_consen 95 AVSKSAQGSGVADNVFNAIRKDF-----PKLFWRSREDNP-NNKWYFERSDGSFK 143 (170)
T ss_dssp EE-HHHHHTTHHHHHHHHHHHH------SSEEEEEETT-T-THHHHHHH-SEEEE
T ss_pred EecchhhhcCHHHHHHHHHHHhc-----cceEEEecCCCC-cccEEEEeeEEEEE
Confidence 99999999999999999885533 238888888776 46777 4556544
No 129
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=63.90 E-value=11 Score=26.97 Aligned_cols=28 Identities=14% Similarity=0.354 Sum_probs=19.6
Q ss_pred cEEEEEEcCCCHHHHHHHHHCCCeeeccC
Q psy837 158 SKVVLTTFKHNPDGLNFFYSLNYSVDDTS 186 (226)
Q Consensus 158 ~~i~l~v~~~N~~A~~FY~k~GF~~~~~~ 186 (226)
..|.|.|.. =.+|++||+++||+.....
T Consensus 2 ~~i~l~V~D-~~~a~~FY~~LGf~~~~~~ 29 (122)
T cd07235 2 DAVGIVVAD-MAKSLDFYRRLGFDFPEEA 29 (122)
T ss_pred ceEEEEecc-HHHHHHHHHHhCceecCCc
Confidence 356666633 4478999999999875433
No 130
>KOG2779|consensus
Probab=59.27 E-value=62 Score=28.92 Aligned_cols=121 Identities=11% Similarity=0.105 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhccc-CCCceEEEEEECCCCCeEEEEEEEEeec----C----Ccc
Q psy837 52 DLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMF-DDRACYLVAKNGSSSTPVAFSHFRFDVD----F----GEP 122 (226)
Q Consensus 52 ~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~~-~~~~~~~~~~~~~~g~ivGf~~~~~~~~----~----~~~ 122 (226)
.+...|++.++.|+...+...--... +++++..-.+. ..+-.|-.+.++.+|+|-+|+.|--... + ...
T Consensus 265 ~me~kDvp~V~~Ll~~yl~qf~la~~--f~~eev~Hwf~p~e~VV~syVvesp~g~ITDF~SFy~lpsTv~~~~~~ktl~ 342 (421)
T KOG2779|consen 265 EMEEKDVPAVFRLLRNYLKQFELAPV--FDEEEVEHWFLPRENVVYSYVVESPNGKITDFCSFYSLPSTVMGNPKYKTLQ 342 (421)
T ss_pred cccccchHHHHHHHHHHHHheecccc--cCHHHhHhhcccccceEEEEEEECCCCcccceeeEEeccccccCCCCcceee
Confidence 56788999999999876654321111 22222221111 1233344444444699999998752211 1 112
Q ss_pred eEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCee
Q psy837 123 VLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSV 182 (226)
Q Consensus 123 ~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~ 182 (226)
.+|+|- .+..+ --=..||..+...|+..|++-.-..-.-.|. .|++.++|-.
T Consensus 343 aaYlyY-~v~~~----t~~~~lvnDalilak~~gfDVFNAld~meN~---~fl~~LkFg~ 394 (421)
T KOG2779|consen 343 AAYLYY-NVATS----TPLLQLVNDALILAKQKGFDVFNALDLMENE---SFLKDLKFGP 394 (421)
T ss_pred eeeEEE-eccCC----ccHHHHHHHHHHHHHhcCCceeehhhhhhhh---hHHHhcCcCc
Confidence 344321 11111 1135678888888998888633322223343 6889999863
No 131
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=58.65 E-value=18 Score=25.98 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=17.7
Q ss_pred EEEEEcCCCHHHHHHHHHCCCeeeccC
Q psy837 160 VVLTTFKHNPDGLNFFYSLNYSVDDTS 186 (226)
Q Consensus 160 i~l~v~~~N~~A~~FY~k~GF~~~~~~ 186 (226)
+.|.|. +=.+|+.||+.+||+.....
T Consensus 4 v~l~V~-Dl~~s~~FY~~lGf~~~~~~ 29 (124)
T cd09012 4 INLPVK-DLEKSTAFYTALGFEFNPQF 29 (124)
T ss_pred EEeecC-CHHHHHHHHHHCCCEEcccc
Confidence 444442 23478999999999976433
No 132
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=55.96 E-value=16 Score=27.03 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=21.9
Q ss_pred CCcEEEEEEcCCCHHHHHHHHHCCCeeeccC
Q psy837 156 NMSKVVLTTFKHNPDGLNFFYSLNYSVDDTS 186 (226)
Q Consensus 156 g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~ 186 (226)
++..|.+.|.+ =..|++||+++||+.....
T Consensus 3 ~i~Hi~i~v~D-l~~s~~FY~~LG~~~~~~~ 32 (142)
T cd08353 3 RMDNVGIVVRD-LEAAIAFFLELGLELEGRA 32 (142)
T ss_pred eeeeEEEEeCC-HHHHHHHHHHcCCEEcccc
Confidence 45667777754 4568999999999876443
No 133
>KOG3014|consensus
Probab=54.92 E-value=79 Score=26.72 Aligned_cols=30 Identities=13% Similarity=0.232 Sum_probs=25.5
Q ss_pred ceEEEEEEEEccccccCCHHHHHHHHHHHH
Q psy837 122 PVLYCYELQLEKQVQRKGLGKFMMQVLELM 151 (226)
Q Consensus 122 ~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~ 151 (226)
..+-|..|-|.+..|++|+++.|+..+...
T Consensus 182 ~~~GIsRIWV~s~~Rr~gIAs~lldva~~~ 211 (257)
T KOG3014|consen 182 AICGISRIWVSSLRRRKGIASLLLDVARCN 211 (257)
T ss_pred cEeeeEEEEeehhhhhhhhHHHHHHHHHHh
Confidence 356688999999999999999999987543
No 134
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=54.10 E-value=12 Score=26.84 Aligned_cols=19 Identities=11% Similarity=0.398 Sum_probs=15.7
Q ss_pred HHHHHHHHHCCCeeeccCC
Q psy837 169 PDGLNFFYSLNYSVDDTSP 187 (226)
Q Consensus 169 ~~A~~FY~k~GF~~~~~~p 187 (226)
.+|++||+.+||+.....+
T Consensus 13 ~~s~~FY~~LGf~~~~~~~ 31 (113)
T cd08356 13 AESKQFYQALGFELEWEND 31 (113)
T ss_pred HHHHHHHHHhCCeeEecCC
Confidence 4689999999999886654
No 135
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=53.87 E-value=1.2e+02 Score=27.28 Aligned_cols=108 Identities=13% Similarity=0.056 Sum_probs=60.8
Q ss_pred ceEEEEEECCCCCeEEEEEEEEeecC-CcceEEEEEEEEcc--ccccCCHHHHHHHHHHHHHHhCCCcEEEEEE------
Q psy837 94 ACYLVAKNGSSSTPVAFSHFRFDVDF-GEPVLYCYELQLEK--QVQRKGLGKFMMQVLELMAFKNNMSKVVLTT------ 164 (226)
Q Consensus 94 ~~~~~~~~~~~g~ivGf~~~~~~~~~-~~~~~yi~~l~V~~--~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v------ 164 (226)
..++.+.++ ++.++|.+.+...... +...+||- =-| ++...-+-..+++.+..++++.+.-.|.++-
T Consensus 35 ~~~vgv~~d-~~~v~aa~ll~~~~~~~g~~~~yip---rGPv~d~~d~ell~~f~~~Lk~~akk~~a~~lridP~~~~~~ 110 (406)
T PF02388_consen 35 VERVGVKDD-GGEVAAAALLLRKKPFKGFKYAYIP---RGPVMDYSDEELLEFFLEELKKYAKKKRALFLRIDPNVIYQE 110 (406)
T ss_dssp EEEEEEE-T-TS-EEEEEEEEEEECTTTCEEEEET---T--EC-TT-HHHHHHHHHHHHHHHCTTTEEEEEE--S-EEEC
T ss_pred EEEEEEEeC-CCeEEEEEEEEEeccCCceeEEEEC---CCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEeCchhhhh
Confidence 344555554 4677776644433222 33355542 234 6777788899999999999987765555421
Q ss_pred ---------cCCCHHHHHHHHHCCCeeeccCCCCCCCCCCcccEEEEeeeCCC
Q psy837 165 ---------FKHNPDGLNFFYSLNYSVDDTSPEDDNGSSESFCYFILSKKNPR 208 (226)
Q Consensus 165 ---------~~~N~~A~~FY~k~GF~~~~~~p~~~~~~~~~~~y~il~k~l~~ 208 (226)
...|...+..++++||...+...... ....+.+ .+.+.|+.
T Consensus 111 ~~~~g~~~~~~~~~~~~~~l~~~G~~~~g~~~~~~--~~~qpr~-~~v~dL~~ 160 (406)
T PF02388_consen 111 RDEDGEPIEGEENDELIENLKALGFRHQGFTKGYD--DTIQPRW-TYVKDLTG 160 (406)
T ss_dssp E-TTS-EEEE-S-THHHHHHHHTT-CCTS-SSSTT--SSSS-SE-EEEEEGCC
T ss_pred cccccccccCcchHHHHHHHHhcCceecCcccCCC--cccCccE-EEEEECCC
Confidence 13466788999999999877665331 2245666 56677765
No 136
>PHA02769 hypothetical protein; Provisional
Probab=50.84 E-value=39 Score=25.05 Aligned_cols=50 Identities=12% Similarity=0.234 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHHh---CCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCC
Q psy837 138 KGLGKFMMQVLELMAFK---NNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPED 189 (226)
Q Consensus 138 kGlG~~Lm~~l~~~a~~---~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~ 189 (226)
.--|-.|+..+..++.+ -|.. |.++ +-.-..+..+|.|.||+..+.....
T Consensus 91 ~apgd~lvnfl~~l~~k~~~dg~e-vlwt-lgfpdhsnaly~kagfk~vg~tsrt 143 (154)
T PHA02769 91 TAPGDHLVNFLNDLAEKLKKDGFE-VLWT-LGFPDHSNALYKKAGFKLVGQTSRT 143 (154)
T ss_pred cCChHHHHHHHHHHHHHHhcCCeE-EEEE-ecCCCcchhHHhhhhhhHhcccccc
Confidence 34477788887776654 3554 3333 3334456678999999988776543
No 137
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=50.61 E-value=1.3e+02 Score=24.13 Aligned_cols=101 Identities=16% Similarity=-0.005 Sum_probs=67.5
Q ss_pred CcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHC---CC-------eeeccCCCC
Q psy837 120 GEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSL---NY-------SVDDTSPED 189 (226)
Q Consensus 120 ~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~---GF-------~~~~~~p~~ 189 (226)
+.-+..+.-..|.|+.+|.|||..| ..+--...+.|+--...||. .+-.+.++++ |. .+..+.|+.
T Consensus 82 DlLVaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR---~al~~Hv~R~~R~gl~ti~~gvrVRSTlpdv 157 (196)
T PF02474_consen 82 DLLVAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVR---HALRNHVERLCRNGLATILSGVRVRSTLPDV 157 (196)
T ss_pred ceeEEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccch---HHHHHHHHHHhccchhhcccCceeeccCccc
Confidence 3346667777899999999999976 46666666788888888873 3444555554 44 455556665
Q ss_pred CC--CCCCcccEEEEeeeCCCCCCCCCCCCCCCCCCc
Q psy837 190 DN--GSSESFCYFILSKKNPRFKSLHPADQSKGNNGT 224 (226)
Q Consensus 190 ~~--~~~~~~~y~il~k~l~~~~~~~~~~~~~~~~~~ 224 (226)
+- +-+.--|-.++-.++.+.-+-=|+.|.---||.
T Consensus 158 ~~dlppTr~ed~lv~V~Pi~r~~seWP~Gt~IdRNGp 194 (196)
T PF02474_consen 158 YLDLPPTRIEDVLVVVLPIGRSMSEWPAGTLIDRNGP 194 (196)
T ss_pred cCCCCCcccccceEEEEcCCCccccCCCCccccCCCC
Confidence 41 112223566777787777777788887777764
No 138
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=50.58 E-value=15 Score=26.36 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.4
Q ss_pred HHHHHHHHHCCCeeeccCC
Q psy837 169 PDGLNFFYSLNYSVDDTSP 187 (226)
Q Consensus 169 ~~A~~FY~k~GF~~~~~~p 187 (226)
..|++||+++||+.....+
T Consensus 14 ~~s~~FY~~lG~~~~~~~~ 32 (120)
T cd08350 14 DATEAFYARLGFSVGYRQA 32 (120)
T ss_pred HHHHHHHHHcCCEEEecCC
Confidence 4689999889999876555
No 139
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=50.41 E-value=1.2e+02 Score=23.56 Aligned_cols=85 Identities=9% Similarity=0.036 Sum_probs=52.6
Q ss_pred eEEEEEECCCCCeEEEEEEEEeecCCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHH
Q psy837 95 CYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNF 174 (226)
Q Consensus 95 ~~~~~~~~~~g~ivGf~~~~~~~~~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~F 174 (226)
+-+++.++ .+++.||+...-.+....+.+++..|.+.|. +....-.-||..+.+-|-+.++=.|.+.+.. ....-
T Consensus 56 HSFvA~~e-~~~~~GfvLAQaVWQGdrptVlV~ri~~~~~-~~~~~~~GLLrAvvKSAYDa~VYEv~l~l~p---~l~~A 130 (161)
T PF09390_consen 56 HSFVAEDE-GGELQGFVLAQAVWQGDRPTVLVRRILLAPG-EPEEVYEGLLRAVVKSAYDAGVYEVHLHLDP---ELEAA 130 (161)
T ss_dssp --EEEE-E-TTEEEEEEEEEEEE-SSSEEEEEEEE---EE-SSHHHHHHHHHHHHHHHHHTT-SEEEE---T---HHHHH
T ss_pred CcEEEEcc-CCceeeeeehhHHhcCCCceEEEEEeecCCC-CcHHHHHHHHHHHHHhhhccceEEEEeeCCH---HHHHH
Confidence 33555523 4899999998888788889999998877665 3456777789999999999998888887655 33333
Q ss_pred HHHCCCeeec
Q psy837 175 FYSLNYSVDD 184 (226)
Q Consensus 175 Y~k~GF~~~~ 184 (226)
-..-||.+.+
T Consensus 131 ~~a~~~~~~~ 140 (161)
T PF09390_consen 131 ARAEGFRLGG 140 (161)
T ss_dssp HHHTT----S
T ss_pred HhhcccccCC
Confidence 4566777543
No 140
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=47.86 E-value=20 Score=29.27 Aligned_cols=64 Identities=13% Similarity=0.237 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHHh--CCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCCCCCCCcccEEEEeee
Q psy837 138 KGLGKFMMQVLELMAFK--NNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDDNGSSESFCYFILSKK 205 (226)
Q Consensus 138 kGlG~~Lm~~l~~~a~~--~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~~~~~~~~~y~il~k~ 205 (226)
-|+|-.+|..+.+.... .....+.|.-......-+++-..+||.+.....-.. .+..|+||.=.
T Consensus 73 AGMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~lv~e----~~~~YeIi~~~ 138 (205)
T PF04816_consen 73 AGMGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDEDLVEE----NGRFYEIIVAE 138 (205)
T ss_dssp EEE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEEEEEE----TTEEEEEEEEE
T ss_pred ecCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeEEEeE----CCEEEEEEEEE
Confidence 37788888777666543 355677787665444555566999999886654322 34578888765
No 141
>PRK04531 acetylglutamate kinase; Provisional
Probab=45.27 E-value=1.5e+02 Score=26.85 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=39.2
Q ss_pred ceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHH
Q psy837 122 PVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFF 175 (226)
Q Consensus 122 ~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY 175 (226)
.+.|+.-+.|.+..||.|++..+...+..-. .++.+.+...|+. .++|
T Consensus 309 ~~~~Ldkf~v~~~~~~~~v~d~vf~~~~~~~-----~~L~Wrsr~~n~~-~~Wy 356 (398)
T PRK04531 309 GGPYLDKFAVLDDARGEGLGRAVWNVMREET-----PQLFWRSRHNNTI-NKFY 356 (398)
T ss_pred CceEeEEEEEccchhhcChHHHHHHHHHhhC-----CceEEEcCCCCCc-ccee
Confidence 4789999999999999999999999876543 3688888887774 4555
No 142
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=41.51 E-value=36 Score=29.43 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=16.1
Q ss_pred EEEEEEccccccCCHHHHHHH
Q psy837 126 CYELQLEKQVQRKGLGKFMMQ 146 (226)
Q Consensus 126 i~~l~V~~~~rgkGlG~~Lm~ 146 (226)
+..++|+|++|.-|-|+.|-+
T Consensus 122 l~sLFl~pd~Rkg~nG~Llsr 142 (336)
T COG3138 122 LCTLFLDPDWRKGGNGRLLSK 142 (336)
T ss_pred hhheeecHHHhcccchhhhhh
Confidence 356899999998888876643
No 143
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=41.35 E-value=24 Score=27.77 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=27.5
Q ss_pred ccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCC
Q psy837 132 EKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSP 187 (226)
Q Consensus 132 ~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p 187 (226)
..++|--|+|.+++.. .|++++.|- .+|+.-+.-.+.+|-++.+..|
T Consensus 122 ~~d~R~ygigaqIL~d-------LGV~~~rLL--tnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 122 PEDLRDYGIGAQILRD-------LGVKKMRLL--TNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp -S----THHHHHHHHH-------TT--SEEEE---S-HHHHHHHHHTT--EEEEE-
T ss_pred ccccccHHHHHHHHHH-------cCCCEEEEC--CCChhHHHHHhcCCCEEEEEec
Confidence 5778888999888876 588888875 4567777777899988887655
No 144
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=38.24 E-value=51 Score=24.25 Aligned_cols=29 Identities=10% Similarity=0.062 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCHHHHHHHHH-CCCeeeccCC
Q psy837 158 SKVVLTTFKHNPDGLNFFYS-LNYSVDDTSP 187 (226)
Q Consensus 158 ~~i~l~v~~~N~~A~~FY~k-~GF~~~~~~p 187 (226)
+.+.+.|. +=.+|++||++ +||+.....+
T Consensus 2 ~Hi~i~V~-D~e~s~~FY~~vLGf~~~~~~~ 31 (136)
T cd08342 2 DHVEFYVG-NAKQLASWFSTKLGFEPVAYHG 31 (136)
T ss_pred eEEEEEeC-CHHHHHHHHHHhcCCeEEEecC
Confidence 45677773 34578899987 9999876544
No 145
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=36.57 E-value=97 Score=25.80 Aligned_cols=63 Identities=13% Similarity=0.256 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHHh--CCCcEEEEEEcCCCHHHHH-HHHHCCCeeeccCCCCCCCCCCcccEEEEeee
Q psy837 138 KGLGKFMMQVLELMAFK--NNMSKVVLTTFKHNPDGLN-FFYSLNYSVDDTSPEDDNGSSESFCYFILSKK 205 (226)
Q Consensus 138 kGlG~~Lm~~l~~~a~~--~g~~~i~l~v~~~N~~A~~-FY~k~GF~~~~~~p~~~~~~~~~~~y~il~k~ 205 (226)
-|+|-.++..+.+...+ .++.++.|.- ..|.-.+| |-.+++|.+....=-. ..+..|+|+--.
T Consensus 92 AGMGG~lI~~ILee~~~~l~~~~rlILQP-n~~~~~LR~~L~~~~~~I~~E~ile----E~~kiYEIlv~e 157 (226)
T COG2384 92 AGMGGTLIREILEEGKEKLKGVERLILQP-NIHTYELREWLSANSYEIKAETILE----EDGKIYEILVVE 157 (226)
T ss_pred eCCcHHHHHHHHHHhhhhhcCcceEEECC-CCCHHHHHHHHHhCCceeeeeeeec----ccCeEEEEEEEe
Confidence 47777777776555543 3666777753 33444444 5589999977544222 134577777543
No 146
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=36.48 E-value=34 Score=25.82 Aligned_cols=21 Identities=10% Similarity=0.362 Sum_probs=16.4
Q ss_pred HHHHHHHHHCCCeeeccCCCC
Q psy837 169 PDGLNFFYSLNYSVDDTSPED 189 (226)
Q Consensus 169 ~~A~~FY~k~GF~~~~~~p~~ 189 (226)
.++.+||+++||+......++
T Consensus 15 ~~S~~Fy~alGfk~Npq~sde 35 (133)
T COG3607 15 EASKAFYTALGFKFNPQFSDE 35 (133)
T ss_pred HHHHHHHHHhCcccCCCcccc
Confidence 467899999999988665444
No 147
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=35.92 E-value=65 Score=29.10 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=36.5
Q ss_pred EEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCC
Q psy837 130 QLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPED 189 (226)
Q Consensus 130 ~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~ 189 (226)
...+++|..|+|.++++. .|+++|.|- ..|..-+.-.+.+|.++.+..|-.
T Consensus 308 g~~~D~RdygigAqIL~d-------LGV~~irLL--TNnp~K~~~L~~~GieV~~~vpl~ 358 (387)
T PRK09318 308 GFKEDERDYAAAFQILKA-------LGIEKVRLL--TNNPRKTKALEKYGIEVVETVPLY 358 (387)
T ss_pred CCCccceeeeHHHHHHHH-------cCCCEEEEC--CCCHHHHHHHHhCCCEEEEEeccC
Confidence 345667777777777765 588998875 456665666679999998777644
No 148
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=35.09 E-value=1.2e+02 Score=23.03 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=40.1
Q ss_pred ccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCC
Q psy837 134 QVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDD 190 (226)
Q Consensus 134 ~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~ 190 (226)
+=||-|+|+.+++.+.....+ .+.+...-.|.-|-.-..|.|-..-.+-.+..
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~----~~eI~AlGTNa~AT~~MlKaGA~~gATGENaI 58 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPE----EVEIIALGTNAIATSAMLKAGANEGATGENAI 58 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCC----CcEEEEEehhHHHHHHHHHcCCCCcccccchh
Confidence 458999999999998776542 46666677799888888899987666655543
No 149
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=34.76 E-value=56 Score=22.54 Aligned_cols=32 Identities=13% Similarity=0.281 Sum_probs=22.9
Q ss_pred CcEEEEEEcCCCHHHHHHHHH-CCCeeeccCCCC
Q psy837 157 MSKVVLTTFKHNPDGLNFFYS-LNYSVDDTSPED 189 (226)
Q Consensus 157 ~~~i~l~v~~~N~~A~~FY~k-~GF~~~~~~p~~ 189 (226)
+..|.+.|.. =..|+.||+. +||+.....+..
T Consensus 3 l~hv~l~v~d-l~~s~~FY~~~LG~~~~~~~~~~ 35 (138)
T COG0346 3 IHHVTLAVPD-LEASIDFYTDVLGLRLVKDTVNE 35 (138)
T ss_pred eEEEEEeeCC-HhHhHHHHHhhcCCeeeeecccc
Confidence 4456666644 3578999975 999998777654
No 150
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=34.17 E-value=62 Score=22.59 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCHHHHHHHHH-CCCeeeccCC
Q psy837 156 NMSKVVLTTFKHNPDGLNFFYS-LNYSVDDTSP 187 (226)
Q Consensus 156 g~~~i~l~v~~~N~~A~~FY~k-~GF~~~~~~p 187 (226)
++..|.+.|. +=.++.+||++ +||+.....+
T Consensus 3 ~l~hi~l~v~-d~~~s~~Fy~~~lG~~~~~~~~ 34 (125)
T cd07253 3 RIDHVVLTVA-DIEATLDFYTRVLGMEVVRFGE 34 (125)
T ss_pred ccceEEEEec-CHHHHHHHHHHHhCceeecccc
Confidence 4567778774 34568899976 9999876554
No 151
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=33.89 E-value=49 Score=23.23 Aligned_cols=30 Identities=10% Similarity=0.191 Sum_probs=20.6
Q ss_pred CCcEEEEEEcCCCHHHHHHHHHCCCeeeccC
Q psy837 156 NMSKVVLTTFKHNPDGLNFFYSLNYSVDDTS 186 (226)
Q Consensus 156 g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~ 186 (226)
++..|.|.|.. =.++.+||..+||+.....
T Consensus 2 ~i~hv~l~v~d-~~~s~~FY~~lG~~~~~~~ 31 (112)
T cd08344 2 SIDHFALEVPD-LEVARRFYEAFGLDVREEG 31 (112)
T ss_pred ceeEEEEecCC-HHHHHHHHHHhCCcEEeec
Confidence 34556666542 3468899999999986543
No 152
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=33.83 E-value=81 Score=22.97 Aligned_cols=63 Identities=21% Similarity=0.307 Sum_probs=27.3
Q ss_pred cceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHH---CCCeeeccC
Q psy837 121 EPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYS---LNYSVDDTS 186 (226)
Q Consensus 121 ~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k---~GF~~~~~~ 186 (226)
...+|| .+.+...++|.=..|+..++..-...++++|.+.+.+.......+-+. .||++....
T Consensus 23 ~~~L~V---~ip~~~~~~~~K~~lvaLLElAee~L~c~~vvic~~k~~~d~~~Llr~l~~vGF~lv~~~ 88 (108)
T PF02100_consen 23 ERTLFV---FIPSSALGQGSKESLVALLELAEEKLGCSHVVICLDKNRPDRASLLRTLMWVGFELVTPG 88 (108)
T ss_dssp TTEEEE---E-SS---SS--SHHHHHHHHHHHHHH----EEEEE---SS-HHHHHHHHTTT--EEE---
T ss_pred CCEEEE---EECCcccccccHHHHHHHHHHhcCcCCCCEEEEEEECCchhHHHhhhhcEeeccEecCCC
Confidence 446664 366677777766666666554445689999999888766654445554 566765443
No 153
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=33.47 E-value=56 Score=22.91 Aligned_cols=31 Identities=16% Similarity=0.302 Sum_probs=20.8
Q ss_pred CCcEEEEEEcCCCHHHHHHHH-HCCCeeeccCC
Q psy837 156 NMSKVVLTTFKHNPDGLNFFY-SLNYSVDDTSP 187 (226)
Q Consensus 156 g~~~i~l~v~~~N~~A~~FY~-k~GF~~~~~~p 187 (226)
|+..|.|.|.. =..|..||+ .+||+.....+
T Consensus 1 ~i~hv~l~v~d-~~~a~~FY~~~lG~~~~~~~~ 32 (126)
T cd08346 1 GLHHVTLITRD-AQETVDFYTDVLGLRLVKKTV 32 (126)
T ss_pred CcccEEEEcCC-hhHhHHHHHHccCCEEeeeEe
Confidence 34567777633 446889996 58999765543
No 154
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=33.29 E-value=48 Score=23.39 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=19.6
Q ss_pred CcEEEEEEcCCCHHHHHHHHHCCCeeeccC
Q psy837 157 MSKVVLTTFKHNPDGLNFFYSLNYSVDDTS 186 (226)
Q Consensus 157 ~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~ 186 (226)
+..|.+.|.. =.+|.+||+.+||+.....
T Consensus 4 l~hv~l~v~D-l~~s~~FY~~lGl~~~~~~ 32 (113)
T cd07267 4 IAHVRFEHPD-LDKAERFLTDFGLEVAART 32 (113)
T ss_pred EEEEEEccCC-HHHHHHHHHHcCCEEEEec
Confidence 3456666543 3468899988999876543
No 155
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=32.56 E-value=35 Score=23.43 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=16.4
Q ss_pred HHHHHHHHH-CCCeeeccCCCC
Q psy837 169 PDGLNFFYS-LNYSVDDTSPED 189 (226)
Q Consensus 169 ~~A~~FY~k-~GF~~~~~~p~~ 189 (226)
..|.+||+. +||+.....+..
T Consensus 7 ~~a~~FY~~~lg~~~~~~~~~~ 28 (108)
T PF12681_consen 7 EAAAAFYEDVLGFEVVFDDPDY 28 (108)
T ss_dssp HHHHHHHHHTTTSEEEEEETSE
T ss_pred HHHHHHHHHhcCCEEEEeCCCe
Confidence 468899976 999998865543
No 156
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=32.15 E-value=82 Score=29.86 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=27.5
Q ss_pred HHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCC
Q psy837 152 AFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDD 190 (226)
Q Consensus 152 a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~ 190 (226)
.+..|+++|.|- ..|+.-+.-.+.+|.++.+..|-..
T Consensus 346 L~dLGI~kIrLL--TNNP~Ki~~L~~~GIeVv~rvpl~~ 382 (555)
T PRK09319 346 LNDLGIKRLRLI--TNNPRKIAGLGGYGLEVVDRVPLLI 382 (555)
T ss_pred HHHcCCCEEEEC--CCCHHHHHHHHhCCCEEEEEecccC
Confidence 345689999885 4577666777899999988877554
No 157
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=30.62 E-value=56 Score=25.11 Aligned_cols=27 Identities=11% Similarity=0.246 Sum_probs=20.4
Q ss_pred CCcEEEEEEcCCCHHHHHHHHH-CCCeee
Q psy837 156 NMSKVVLTTFKHNPDGLNFFYS-LNYSVD 183 (226)
Q Consensus 156 g~~~i~l~v~~~N~~A~~FY~k-~GF~~~ 183 (226)
++..|.+.|.. =.+|+.||++ +||++.
T Consensus 4 ~i~Hv~i~V~D-le~s~~FY~~~LG~~~~ 31 (162)
T TIGR03645 4 TFSHIGISVPD-LDAAVKFYTEVLGWYLI 31 (162)
T ss_pred eEEEEEEEeCC-HHHHHHHHHHhcCCEEE
Confidence 56778888754 4578999965 999874
No 158
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=29.84 E-value=1.7e+02 Score=23.36 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=41.5
Q ss_pred cCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCC
Q psy837 137 RKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPED 189 (226)
Q Consensus 137 gkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~ 189 (226)
+.|.++.|+..+.......|++.+..| .+..-.+++.++|.....-.+-+
T Consensus 97 ~~g~~~~l~~~l~~~L~~~g~~w~vfT---aT~~lr~~~~rlgl~~~~La~Ad 146 (179)
T PF12261_consen 97 SPGAARLLFAALAQLLAQQGFEWVVFT---ATRQLRNLFRRLGLPPTVLADAD 146 (179)
T ss_pred CcccHHHHHHHHHHHHHHCCCCEEEEe---CCHHHHHHHHHcCCCceeccccC
Confidence 689999999999999999999887666 57788899999999877665443
No 159
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=29.60 E-value=73 Score=22.59 Aligned_cols=31 Identities=10% Similarity=0.135 Sum_probs=21.2
Q ss_pred CCcEEEEEEcCCCHHHHHHHH-HCCCeeeccCC
Q psy837 156 NMSKVVLTTFKHNPDGLNFFY-SLNYSVDDTSP 187 (226)
Q Consensus 156 g~~~i~l~v~~~N~~A~~FY~-k~GF~~~~~~p 187 (226)
++..+.|.|.. =.+|.+||. .+||+.....|
T Consensus 4 ~l~hv~l~v~D-l~~s~~FY~~~lG~~~~~~~~ 35 (122)
T cd07265 4 RPGHVQLRVLD-LEEAIKHYREVLGLDEVGRDD 35 (122)
T ss_pred eEeEEEEEeCC-HHHHHHHHHhccCCEeeeecC
Confidence 44567777643 357889995 59999766543
No 160
>PRK08815 GTP cyclohydrolase; Provisional
Probab=28.09 E-value=1e+02 Score=27.71 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=30.1
Q ss_pred cccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCC
Q psy837 133 KQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPED 189 (226)
Q Consensus 133 ~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~ 189 (226)
++.|.-|+|.++++ ..|+++|.|-. +|..-+.-.+.+|.++.+..|-.
T Consensus 296 ~D~RdygigAQIL~-------dLGV~kirLLT--nnp~K~~~L~g~gieVv~~vp~~ 343 (375)
T PRK08815 296 PDERRYGSAVAMLR-------GLGITRVRLLT--NNPTKAERLRAAGIEVEDRIRVT 343 (375)
T ss_pred ccceeeeHHHHHHH-------HcCCCeEEECC--CCHHHHHHHHhCCCEEEEEeccC
Confidence 33444444444444 46899998853 46544555578898988777644
No 161
>KOG4387|consensus
Probab=28.07 E-value=3.2e+02 Score=21.98 Aligned_cols=64 Identities=17% Similarity=0.043 Sum_probs=41.6
Q ss_pred HHHHHHHHHH-HhCCCcEEEEEEcCCCHHHH---HHHHHCCCeeeccC-CCCCCCCCCcccEEEEeeeCCCCC
Q psy837 143 FMMQVLELMA-FKNNMSKVVLTTFKHNPDGL---NFFYSLNYSVDDTS-PEDDNGSSESFCYFILSKKNPRFK 210 (226)
Q Consensus 143 ~Lm~~l~~~a-~~~g~~~i~l~v~~~N~~A~---~FY~k~GF~~~~~~-p~~~~~~~~~~~y~il~k~l~~~~ 210 (226)
.=+-.++++| .++.+.+|.+.+.+.|..-- +=+.=+||++.... |- .....+|.+|.-++.+..
T Consensus 119 e~lvalLEfAEekl~~d~Vfi~F~K~R~dr~~LlrtfsyvGFEpvrp~HP~----~pp~~~~ffM~Y~~er~~ 187 (191)
T KOG4387|consen 119 EGLVALLEFAEEKLHVDKVFICFDKNREDRAALLRTFSYVGFEPVRPDHPV----VPPRPDVFFMVYPLERDV 187 (191)
T ss_pred HhHHHHHHHHHHhhccceEEEEEecCccChHhhhhhehcceeeecCCCCCC----CCCccceEEEEEeecccc
Confidence 3334444444 45899999999887665433 34455788876544 21 346679999999987643
No 162
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=28.05 E-value=94 Score=23.18 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=17.4
Q ss_pred EEEEEEcCCCHHHHHHH-HHCCCeeec
Q psy837 159 KVVLTTFKHNPDGLNFF-YSLNYSVDD 184 (226)
Q Consensus 159 ~i~l~v~~~N~~A~~FY-~k~GF~~~~ 184 (226)
.+++.|. +-.++++|| +.+||+...
T Consensus 5 Hv~irV~-DlerSi~FY~~vLG~~~~~ 30 (127)
T cd08358 5 HFVFKVG-NRNKTIKFYREVLGMKVLR 30 (127)
T ss_pred EEEEEeC-CHHHHHHHHHHhcCCEEEe
Confidence 4555553 356899999 569998754
No 163
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=27.80 E-value=97 Score=21.52 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=21.4
Q ss_pred CCcEEEEEEcCCCHHHHHHHH-HCCCeeecc
Q psy837 156 NMSKVVLTTFKHNPDGLNFFY-SLNYSVDDT 185 (226)
Q Consensus 156 g~~~i~l~v~~~N~~A~~FY~-k~GF~~~~~ 185 (226)
++..|.+.|.. =.+|..||. .+||+....
T Consensus 3 ~~~hi~l~v~d-~~~a~~fy~~~lG~~~~~~ 32 (125)
T cd08352 3 GIHHVAIICSD-YEKSKEFYVEILGFKVIRE 32 (125)
T ss_pred ccceEEEEcCC-HHHHHHHHHHhcCCEEeee
Confidence 56678888743 446889996 699997654
No 164
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=27.35 E-value=93 Score=28.25 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=25.1
Q ss_pred HhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCC
Q psy837 153 FKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDD 190 (226)
Q Consensus 153 ~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~ 190 (226)
+..|+++|.|-. .|+.-+.-.+.+|.++.+..|-..
T Consensus 343 ~~LGv~~irLLT--nnp~K~~~L~~~GieV~~~v~~~~ 378 (402)
T PRK09311 343 VDLGVRSMRLLT--NNPRKIAGLQGYGLHVTERVPLPV 378 (402)
T ss_pred HHcCCCEEEECC--CCHHHHHHHhhCCCEEEEEeccCC
Confidence 446888888753 466555556799999887776443
No 165
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=26.89 E-value=81 Score=24.70 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=33.4
Q ss_pred cccCCHHHHH-HHHHHHHHHhCCCcEEEEEE-c-CCCHH--HHHHHHHCCCeeecc
Q psy837 135 VQRKGLGKFM-MQVLELMAFKNNMSKVVLTT-F-KHNPD--GLNFFYSLNYSVDDT 185 (226)
Q Consensus 135 ~rgkGlG~~L-m~~l~~~a~~~g~~~i~l~v-~-~~N~~--A~~FY~k~GF~~~~~ 185 (226)
..+.++|+.- ++.+..+|++.|+++|-+.. . -.+++ -.++++..||++..-
T Consensus 32 vE~~~Y~~~tRveEiieFak~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV 87 (157)
T PF08901_consen 32 VEGEGYGKLTRVEEIIEFAKRMGYKKIGIAFCIGLRKEARILAKILEANGFEVYSV 87 (157)
T ss_pred HhhhcccccchHHHHHHHHHHcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEE
Confidence 3344555543 77788999999999998732 1 22332 335678999997643
No 166
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=26.46 E-value=4.8e+02 Score=23.44 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=45.1
Q ss_pred EEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCC
Q psy837 127 YELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSP 187 (226)
Q Consensus 127 ~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p 187 (226)
..|.+++......+...|++.+...|.+.|+..+.+.- .. ..-....+..||......+
T Consensus 104 ~R~l~~~~~~~~~~~~~L~~~~~~~a~~~~~Ss~h~lF-~~-~~~~~~l~~~G~~~r~~~q 162 (370)
T PF04339_consen 104 PRLLIAPGADRAALRAALLQALEQLAEENGLSSWHILF-PD-EEDAAALEEAGFLSRQGVQ 162 (370)
T ss_pred cceeECCCCCHHHHHHHHHHHHHHHHHHcCCCcceeec-CC-HHHHHHHHhCCCceecCCc
Confidence 35778888888999999999999999999998888753 32 3334566888997654443
No 167
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=26.34 E-value=83 Score=22.10 Aligned_cols=30 Identities=7% Similarity=0.103 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCHHHHHHHHH-CCCeeeccCCC
Q psy837 158 SKVVLTTFKHNPDGLNFFYS-LNYSVDDTSPE 188 (226)
Q Consensus 158 ~~i~l~v~~~N~~A~~FY~k-~GF~~~~~~p~ 188 (226)
..|.|.|. +=.++.+||.+ +||+.....+.
T Consensus 2 ~hv~l~v~-d~~~~~~fy~~~lG~~~~~~~~~ 32 (128)
T cd07249 2 DHIGIAVP-DLEAAIKFYRDVLGVGPWEEEEV 32 (128)
T ss_pred cEEEEEeC-CHHHHHHHHHHhhCCCCcccccc
Confidence 35677774 24467899976 99998776654
No 168
>KOG1472|consensus
Probab=26.25 E-value=17 Score=35.34 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=51.0
Q ss_pred eEEEEEEEEeec-CCcceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCC-CcEEEEEEcCCCHHHHHHHHHCCCeeec
Q psy837 107 PVAFSHFRFDVD-FGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNN-MSKVVLTTFKHNPDGLNFFYSLNYSVDD 184 (226)
Q Consensus 107 ivGf~~~~~~~~-~~~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g-~~~i~l~v~~~N~~A~~FY~k~GF~~~~ 184 (226)
+||-++++...+ .-.+++.+ .|.-+.|-+|.|+.+|.++..+.+... +.. +..+. -..|+..+.+.||...-
T Consensus 431 ~vggi~~r~f~~k~f~eivf~---av~~~eqv~g~g~hlmnhlkd~~~~~~~i~~--~ltya-d~~aigyfkkqgfs~ei 504 (720)
T KOG1472|consen 431 VVGGICFRPFPEKGFTEIVFC---AVTTDEQVKGSGTHLMNHLKDYVRSSSTIDY--ALTYA-DEGAIGYFKKQGFSKEI 504 (720)
T ss_pred cccccccCcCcccCCcceeec---cccCcccccccCcCchhhHHHHhhccchHHH--HHHhh-hhcccccccCccchhhc
Confidence 888888874333 23344444 789999999999999999999988755 221 11222 33578888999997554
Q ss_pred cC
Q psy837 185 TS 186 (226)
Q Consensus 185 ~~ 186 (226)
..
T Consensus 505 ~~ 506 (720)
T KOG1472|consen 505 KF 506 (720)
T ss_pred cc
Confidence 43
No 169
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=25.73 E-value=1.5e+02 Score=23.80 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=33.8
Q ss_pred ccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCC
Q psy837 132 EKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSP 187 (226)
Q Consensus 132 ~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p 187 (226)
.+++|--|+|.+++..+ |+++++|-. +|..-+.--..+|-++.+..|
T Consensus 121 ~~d~R~yGiGAQIL~dL-------GV~~~rLLt--n~~~k~~~L~g~gleVv~~~~ 167 (191)
T TIGR00505 121 PADERDFSLCADILEDL-------GVKKVRLLT--NNPKKIEILKKAGINIVERVP 167 (191)
T ss_pred cccceehhHHHHHHHHc-------CCCEEEECC--CCHHHHHHHHhCCCEEEEEec
Confidence 44689999999998864 899988753 355445555677777776655
No 170
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=25.70 E-value=1.4e+02 Score=24.09 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=34.6
Q ss_pred EccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCC
Q psy837 131 LEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPE 188 (226)
Q Consensus 131 V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~ 188 (226)
..+++|.-|+|.+++.. .|++++.|- .+|..-+.--..+|.++.+.-|-
T Consensus 123 ~~~d~R~yGiGAQIL~d-------LGV~~mrLL--tn~~~k~~~L~g~GleV~~~~~~ 171 (197)
T PRK00393 123 FAADERDYTLAADMLKA-------LGVKKVRLL--TNNPKKVEALTEAGINIVERVPL 171 (197)
T ss_pred CCccceehhHHHHHHHH-------cCCCEEEEC--CCCHHHHHHHHhCCCEEEEEecc
Confidence 35569999999999886 499998875 33554344445788888766653
No 171
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=25.41 E-value=1.1e+02 Score=28.34 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=31.5
Q ss_pred ccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCC
Q psy837 134 QVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDD 190 (226)
Q Consensus 134 ~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~ 190 (226)
++|.-|+|.++++ ..|+++|+|- ..|+.-+.-.+.+|.++.+..|-..
T Consensus 365 D~RdygigAqIL~-------dLGI~~irLL--TNNp~K~~~L~~~GieVve~vp~~~ 412 (450)
T PLN02831 365 DSREYGIGAQILR-------DLGVRTMRLM--TNNPAKYTGLKGYGLAVVGRVPLLT 412 (450)
T ss_pred cceehHHHHHHHH-------HcCCCEEEEC--CCCHHHHHHHhhCCCEEEEEecccC
Confidence 3444444444444 4589998885 4576656667899999887776543
No 172
>PRK10291 glyoxalase I; Provisional
Probab=25.16 E-value=1e+02 Score=22.12 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=13.7
Q ss_pred HHHHHHHH-HCCCeeeccC
Q psy837 169 PDGLNFFY-SLNYSVDDTS 186 (226)
Q Consensus 169 ~~A~~FY~-k~GF~~~~~~ 186 (226)
..|+.||+ .+||+.....
T Consensus 8 e~s~~FY~~~LG~~~~~~~ 26 (129)
T PRK10291 8 QRSIDFYTNVLGMKLLRTS 26 (129)
T ss_pred HHHHHHHHhccCCEEEEee
Confidence 47899995 4999976543
No 173
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=25.16 E-value=3.4e+02 Score=23.22 Aligned_cols=98 Identities=11% Similarity=0.086 Sum_probs=54.6
Q ss_pred EeeCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCh--hhhhhcccCC--Cce-EEEEEECCCCCeEEEEEE-EEeecCC
Q psy837 47 YKKSTDLDAETKKWVWELEEKNMKHSYEVCDIGWDP--QGKHSEMFDD--RAC-YLVAKNGSSSTPVAFSHF-RFDVDFG 120 (226)
Q Consensus 47 ~~~~~~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~--~~~~~e~~~~--~~~-~~~~~~~~~g~ivGf~~~-~~~~~~~ 120 (226)
++..++++++++..||..+ | ...||... .....+++.. +.. --++.-+ |+++++=.+ +-+.+.
T Consensus 129 v~~v~~~S~~Ela~iY~~L-------f-~~Rwg~~~~~~~~l~e~f~~Lr~~~fG~vL~l~--~~P~Aiqlv~k~es~~- 197 (264)
T PF07395_consen 129 VRPVSEFSPEELADIYIDL-------F-QKRWGFRCYGKEHLAEFFSELRHMIFGSVLFLN--GQPCAIQLVYKVESPK- 197 (264)
T ss_pred EEEHHHCCHHHHHHHHHHH-------H-HHHhCCCCCcHHHHHHHHHHhHHhheeeEEEEC--CcceEEEEEEEecCCC-
Confidence 4557788899999988743 2 13455221 1222333222 111 1122233 789997533 322222
Q ss_pred cceEEE--EEEEEccccccCCHHHHHH----HHHHHHHHhCCC
Q psy837 121 EPVLYC--YELQLEKQVQRKGLGKFMM----QVLELMAFKNNM 157 (226)
Q Consensus 121 ~~~~yi--~~l~V~~~~rgkGlG~~Lm----~~l~~~a~~~g~ 157 (226)
.+|+ ....++|+++.--+|+-|| +.+.+.|++.|.
T Consensus 198 --wv~~D~iNgG~Dp~~~~~SpGSiL~w~Ni~~A~~~~~~~~k 238 (264)
T PF07395_consen 198 --WVYFDYINGGYDPECRDFSPGSILMWLNIQDAWEYCRAQGK 238 (264)
T ss_pred --eEEEecccCccCcccccCCCccEEEEeeHHHHHHHHHHhCC
Confidence 2332 2346799999999999884 556677776664
No 174
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=24.93 E-value=3.8e+02 Score=21.73 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhcc-cCCCceEEEEEECCCCCeEEEEEEEEee----cC----Ccc
Q psy837 52 DLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEM-FDDRACYLVAKNGSSSTPVAFSHFRFDV----DF----GEP 122 (226)
Q Consensus 52 ~~~~~~l~~i~~l~~~~~~~~y~~~~~~w~~~~~~~e~-~~~~~~~~~~~~~~~g~ivGf~~~~~~~----~~----~~~ 122 (226)
.+.++|++.+..|+...+.. |.-. .-+++++-.-.+ -.++-.+..+.++++|+|-.|++|-.-. .. .-.
T Consensus 33 ~m~~~Dv~~v~~Ll~~yl~~-f~l~-~~fs~eev~Hw~lp~~~Vv~syVve~~~~~ITDf~SFY~Lpstvi~~~k~~~l~ 110 (190)
T PF02799_consen 33 PMEEKDVPQVTKLLNKYLKK-FDLA-PVFSEEEVKHWFLPRKNVVYSYVVEDPDGKITDFFSFYSLPSTVIGNPKHKTLK 110 (190)
T ss_dssp E--GGGHHHHHHHHHHHHTT-SSEE-EE--HHHHHHHHS-BTTTEEEEEEEETTSEEEEEEEEEEEEEEESSSSSSSEEE
T ss_pred cCchhhHHHHHHHHHHHHHh-cccc-cccCHHHHHhhcccCCCeEEEEEEecCCCceeeEEEEeecceeecCCCCcccee
Confidence 45678999999999876653 2111 112222222112 2334444444444257899998875321 11 123
Q ss_pred eEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCee
Q psy837 123 VLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSV 182 (226)
Q Consensus 123 ~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~ 182 (226)
.+|++--. ... ==-+.||+.+...|++.|++-.-.--.-+|. .|.+.++|..
T Consensus 111 aAY~fY~~-~~~----~~l~~Lm~DaLi~Ak~~gfDVFNaLd~mdN~---~fL~~lKFg~ 162 (190)
T PF02799_consen 111 AAYSFYYV-ATS----TRLKELMNDALILAKNEGFDVFNALDLMDNS---SFLEDLKFGP 162 (190)
T ss_dssp EEEEEEEE-ESS----SHHHHHHHHHHHHHHHTTESEEEEESTTTGG---GTTTTTT-EE
T ss_pred eeeeeeee-ecC----CCHHHHHHHHHHHHHHcCCCEEehhhhccch---hhHhhCCccC
Confidence 44543222 221 2246789999999999999855444445565 5678888874
No 175
>PF13530 SCP2_2: Sterol carrier protein domain; PDB: 3SXN_C 3N7Z_A 3RYO_B 3R1K_A 3UY5_A 2HV2_F 2I00_D 2OZG_A.
Probab=24.73 E-value=1.7e+02 Score=23.70 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=38.2
Q ss_pred CCceEEEEEECCCCCeEEEEEEEEee-cCCcceEEEEEE-EEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Q psy837 92 DRACYLVAKNGSSSTPVAFSHFRFDV-DFGEPVLYCYEL-QLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTT 164 (226)
Q Consensus 92 ~~~~~~~~~~~~~g~ivGf~~~~~~~-~~~~~~~yi~~l-~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v 164 (226)
+...++++.++ +|++.||+.|.+.. ......+.|.++ +.+++.+ +.|++.+.... ..+..|.+..
T Consensus 22 ~~~~~~~~~~~-~g~~~GY~~y~~~~~~~~~~~l~V~El~~~~~~A~-----~aLl~fl~~h~--~~~~~v~~~~ 88 (218)
T PF13530_consen 22 KDRGYAVYYDE-DGEPDGYVIYRFKDDWEPGGTLEVRELVALDPEAY-----RALLAFLASHR--DQVDEVEWNR 88 (218)
T ss_dssp CGSEEEEEEEC-TSEEEEEEEEEEET-SSSTTEEEEEEEEESSHHHH-----HHHHHHHHTCC--TTESEEEEEE
T ss_pred CCceEEEEECC-CCCeeEEEEEEEcccCCCCceEEEEEEEeCCHHHH-----HHHHHHHHhhh--CcceEEEEEc
Confidence 34455666665 69999999998764 123346777775 5555543 34444443321 3456677754
No 176
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=24.70 E-value=1.1e+02 Score=20.86 Aligned_cols=20 Identities=25% Similarity=0.620 Sum_probs=15.4
Q ss_pred CHHHHHHHHH-CCCeeeccCC
Q psy837 168 NPDGLNFFYS-LNYSVDDTSP 187 (226)
Q Consensus 168 N~~A~~FY~k-~GF~~~~~~p 187 (226)
-.++.+||.+ +||++....+
T Consensus 9 ~~~~~~fY~~~lG~~~~~~~~ 29 (119)
T cd07263 9 QDKALAFYTEKLGFEVREDVP 29 (119)
T ss_pred HHHHHHHHHhccCeEEEEeec
Confidence 3467899976 9999887654
No 177
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=24.27 E-value=1.1e+02 Score=21.52 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=20.7
Q ss_pred CCcEEEEEEcCCCHHHHHHHHH-CCCeeeccC
Q psy837 156 NMSKVVLTTFKHNPDGLNFFYS-LNYSVDDTS 186 (226)
Q Consensus 156 g~~~i~l~v~~~N~~A~~FY~k-~GF~~~~~~ 186 (226)
++..+.+.|.. =..+.+||.+ +||++....
T Consensus 4 ~i~hi~l~v~d-~~~~~~Fy~~~lG~~~~~~~ 34 (121)
T cd07266 4 RLGHVELRVTD-LEKSREFYVDVLGLVETEED 34 (121)
T ss_pred eeeEEEEEcCC-HHHHHHHHHhccCCEEeccC
Confidence 45567777743 3468899965 999986554
No 178
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.65 E-value=1.2e+02 Score=21.39 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCHHHHHHHH-HCCCeeeccCC
Q psy837 157 MSKVVLTTFKHNPDGLNFFY-SLNYSVDDTSP 187 (226)
Q Consensus 157 ~~~i~l~v~~~N~~A~~FY~-k~GF~~~~~~p 187 (226)
+..|.|.|.. =.++.+||. .+||++....+
T Consensus 3 i~hi~l~v~d-~~~~~~Fy~~~lG~~~~~~~~ 33 (125)
T cd07255 3 IGAVTLRVAD-LERSLAFYQDVLGLEVLERTD 33 (125)
T ss_pred EEEEEEEECC-HHHHHHHHHhccCcEEEEcCC
Confidence 4567777743 345789996 59999887654
No 179
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=23.42 E-value=1.2e+02 Score=24.60 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=38.5
Q ss_pred EEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCCCC
Q psy837 128 ELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDD 190 (226)
Q Consensus 128 ~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~ 190 (226)
.+...++.|..|+|.+++..+ |+++|.|-. +|+.-+.=-+..|-++.++.|-..
T Consensus 119 ~lg~~~D~R~ygigAqIL~dL-------GI~~irLLt--nnp~K~~~l~~~Gi~vverv~~~~ 172 (193)
T COG0807 119 ALGFPADERDYGIGAQILKDL-------GIKKIRLLT--NNPRKIYGLEGFGINVVERVPLIV 172 (193)
T ss_pred hhcCCchHHHHHHHHHHHHHc-------CCcEEEEec--CChHHHHHHHhCCceEEEEeecCC
Confidence 345678899999999998864 999999964 365433333677767777776554
No 180
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=23.19 E-value=1.1e+02 Score=21.49 Aligned_cols=21 Identities=5% Similarity=0.295 Sum_probs=16.4
Q ss_pred CCHHHHHHHH-HCCCeeeccCC
Q psy837 167 HNPDGLNFFY-SLNYSVDDTSP 187 (226)
Q Consensus 167 ~N~~A~~FY~-k~GF~~~~~~p 187 (226)
+=.+|+.||+ .+||+.....+
T Consensus 9 d~~~a~~FY~~~lG~~~~~~~~ 30 (122)
T cd08355 9 DAAAAIDWLTDAFGFEERLVVP 30 (122)
T ss_pred CHHHHHHHHHHhcCCEEEEEEe
Confidence 4457899995 99999886654
No 181
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=23.18 E-value=2.9e+02 Score=19.77 Aligned_cols=49 Identities=4% Similarity=0.243 Sum_probs=39.4
Q ss_pred cceEEEEEEEEccccccCCHHHHHHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHH
Q psy837 121 EPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNFF 175 (226)
Q Consensus 121 ~~~~yi~~l~V~~~~rgkGlG~~Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY 175 (226)
..+.||.-+.|.+..++.|++..+.+.+..- ..++...+...|+. .++|
T Consensus 31 ~~v~~LdkFav~~~~~~~gv~D~vf~~i~~d-----~~~L~Wrsr~~n~~-n~Wy 79 (98)
T cd03173 31 NSIPYLDKFAVSDHLWLNNVTDNIFNLIRKD-----FPSLLWRVRENDAN-LKWY 79 (98)
T ss_pred CCCEEEEEEEEcccccccCHHHHHHHHHHhh-----CCeeEEEeCCCCCc-cceE
Confidence 4578999999999999999999999987654 24788888877764 4655
No 182
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=22.92 E-value=1.3e+02 Score=20.81 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=20.1
Q ss_pred CcEEEEEEcCCCHHHHHHHHH-CCCeeeccCC
Q psy837 157 MSKVVLTTFKHNPDGLNFFYS-LNYSVDDTSP 187 (226)
Q Consensus 157 ~~~i~l~v~~~N~~A~~FY~k-~GF~~~~~~p 187 (226)
+..+.+.|. +=..+.+||++ +||+.....+
T Consensus 3 l~hv~l~v~-d~~~~~~FY~~~lg~~~~~~~~ 33 (117)
T cd07240 3 IAYAELEVP-DLERALEFYTDVLGLTVLDRDA 33 (117)
T ss_pred eeEEEEecC-CHHHHHHHHHhccCcEEEeecC
Confidence 345555543 24468899976 9999876553
No 183
>PRK11478 putative lyase; Provisional
Probab=22.71 E-value=1e+02 Score=21.89 Aligned_cols=28 Identities=7% Similarity=0.299 Sum_probs=19.4
Q ss_pred CCcEEEEEEcCCCHHHHHHHH-HCCCeeec
Q psy837 156 NMSKVVLTTFKHNPDGLNFFY-SLNYSVDD 184 (226)
Q Consensus 156 g~~~i~l~v~~~N~~A~~FY~-k~GF~~~~ 184 (226)
++..|.+.|.+ =..|++||. .+||++..
T Consensus 6 ~i~hv~l~v~D-~~~a~~FY~~~LG~~~~~ 34 (129)
T PRK11478 6 QVHHIAIIATD-YAVSKAFYCDILGFTLQS 34 (129)
T ss_pred eecEEEEEcCC-HHHHHHHHHHHhCCEecc
Confidence 45567777633 446889995 69999753
No 184
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=22.50 E-value=1.4e+02 Score=21.11 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=19.6
Q ss_pred CCcEEEEEEcCCCHHHHHHHHH-CCCeeecc
Q psy837 156 NMSKVVLTTFKHNPDGLNFFYS-LNYSVDDT 185 (226)
Q Consensus 156 g~~~i~l~v~~~N~~A~~FY~k-~GF~~~~~ 185 (226)
++..|.+.|.. =.+|.+||+. +||+....
T Consensus 2 ~l~~v~l~v~D-l~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 2 SLGYLGVESSD-LDAWRRFATDVLGLQVGDR 31 (120)
T ss_pred cccEEEEEeCC-HHHHHHHHHhccCceeccC
Confidence 34567777653 3368899965 89987544
No 185
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=22.19 E-value=1.3e+02 Score=21.50 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=19.6
Q ss_pred cEEEEEEcCCCHHHHHHHHH-CCCeeeccCC
Q psy837 158 SKVVLTTFKHNPDGLNFFYS-LNYSVDDTSP 187 (226)
Q Consensus 158 ~~i~l~v~~~N~~A~~FY~k-~GF~~~~~~p 187 (226)
..|.+.|.. =.++.+||++ +||++....+
T Consensus 3 ~hv~l~v~D-~~~s~~FY~~~lG~~~~~~~~ 32 (134)
T cd08348 3 SHVVLYVRD-LEAMVRFYRDVLGFTVTDRGP 32 (134)
T ss_pred eEEEEEecC-HHHHHHHHHHhcCCEEEeecc
Confidence 456666543 3467899965 9999876554
No 186
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=21.72 E-value=1.1e+02 Score=22.80 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=20.2
Q ss_pred CCcEEEEEEcCCCHHHHHHHHH-CCCeeecc
Q psy837 156 NMSKVVLTTFKHNPDGLNFFYS-LNYSVDDT 185 (226)
Q Consensus 156 g~~~i~l~v~~~N~~A~~FY~k-~GF~~~~~ 185 (226)
++..|.|.|.. =.++++||+. +||++...
T Consensus 6 ~l~Hv~l~v~D-le~s~~FY~~vLGf~~~~~ 35 (143)
T cd07243 6 RLDHCLLTGED-IAETTRFFTDVLDFYLAER 35 (143)
T ss_pred eeCEEEEecCC-HHHHHHHHHHhcCCEEEEE
Confidence 45667777753 2568899965 99986444
No 187
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=21.50 E-value=1.1e+02 Score=21.29 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=21.1
Q ss_pred CCcEEEEEEcCCCHHHHHHHHH-CCCeeeccC
Q psy837 156 NMSKVVLTTFKHNPDGLNFFYS-LNYSVDDTS 186 (226)
Q Consensus 156 g~~~i~l~v~~~N~~A~~FY~k-~GF~~~~~~ 186 (226)
++..+.+.|.. =..+.+||++ +||+.....
T Consensus 3 ~i~hv~l~v~d-~~~s~~FY~~~lG~~~~~~~ 33 (120)
T cd08362 3 ALRGVGLGVPD-LAAAAAFYREVWGLSVVAED 33 (120)
T ss_pred eeeEEEEecCC-HHHHHHHHHhCcCcEEEEec
Confidence 45667777643 3578999975 999976443
No 188
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=21.49 E-value=1.4e+02 Score=25.01 Aligned_cols=42 Identities=7% Similarity=-0.031 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCcEEEEEE---cCCCHHHHHHHHHCCCeeecc
Q psy837 144 MMQVLELMAFKNNMSKVVLTT---FKHNPDGLNFFYSLNYSVDDT 185 (226)
Q Consensus 144 Lm~~l~~~a~~~g~~~i~l~v---~~~N~~A~~FY~k~GF~~~~~ 185 (226)
-...+....+..|.++|-+-. ..-|.....||+..||++...
T Consensus 107 ~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~ 151 (239)
T TIGR02990 107 PSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNF 151 (239)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeee
Confidence 345556666778999998854 345778889999999998765
No 189
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=21.13 E-value=4e+02 Score=20.68 Aligned_cols=53 Identities=8% Similarity=0.058 Sum_probs=38.4
Q ss_pred HHHH-HHHHHHHHHHhCCCcEEEEEE-----------cCCCHHHHHHHHHCCCeee---ccCCCCCCC
Q psy837 140 LGKF-MMQVLELMAFKNNMSKVVLTT-----------FKHNPDGLNFFYSLNYSVD---DTSPEDDNG 192 (226)
Q Consensus 140 lG~~-Lm~~l~~~a~~~g~~~i~l~v-----------~~~N~~A~~FY~k~GF~~~---~~~p~~~~~ 192 (226)
++.+ ..+.+...+.+.|++.|.+-+ -...+.|++-..+.|+++. +..|-+.+|
T Consensus 72 yAAq~aa~~~a~k~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I~DvTPiPhNG 139 (149)
T PTZ00129 72 YAAMMAAQDVAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIEDVTPIPTDS 139 (149)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecCCCCCCC
Confidence 4443 345566777889999999998 4677889999999999855 444555443
No 190
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=20.94 E-value=1.6e+02 Score=20.61 Aligned_cols=27 Identities=4% Similarity=0.079 Sum_probs=17.4
Q ss_pred EEEEcCCC-HHHHHHH-HHCCCeeeccCC
Q psy837 161 VLTTFKHN-PDGLNFF-YSLNYSVDDTSP 187 (226)
Q Consensus 161 ~l~v~~~N-~~A~~FY-~k~GF~~~~~~p 187 (226)
.+.....| ..|..|| +.+||+.....+
T Consensus 4 hv~l~v~d~~~a~~FY~~~lG~~~~~~~~ 32 (120)
T cd07254 4 HVALNVDDLEASIAFYSKLFGVEPTKVRD 32 (120)
T ss_pred EEEEEeCCHHHHHHHHHHHhCCeEecccC
Confidence 33333345 5789999 577998765543
No 191
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=20.50 E-value=83 Score=21.54 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=14.9
Q ss_pred HHHHHHHHH-CCCeeeccCC
Q psy837 169 PDGLNFFYS-LNYSVDDTSP 187 (226)
Q Consensus 169 ~~A~~FY~k-~GF~~~~~~p 187 (226)
..+.+||++ +||+.....+
T Consensus 10 ~~s~~FY~~~lg~~~~~~~~ 29 (112)
T cd08349 10 ERSLAFYRDVLGFEVDWEHP 29 (112)
T ss_pred HHHHHHHHhccCeEEEEEcC
Confidence 468899987 9999776553
No 192
>PRK07198 hypothetical protein; Validated
Probab=20.33 E-value=1.6e+02 Score=26.71 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=46.0
Q ss_pred cccccCCHHHHHHHHHHHHHHhCCCcEE-EEEEcCCCHHHHHHHHHCCCeeeccCCCCCCCCCCcccEEEEeeeCCCCC
Q psy837 133 KQVQRKGLGKFMMQVLELMAFKNNMSKV-VLTTFKHNPDGLNFFYSLNYSVDDTSPEDDNGSSESFCYFILSKKNPRFK 210 (226)
Q Consensus 133 ~~~rgkGlG~~Lm~~l~~~a~~~g~~~i-~l~v~~~N~~A~~FY~k~GF~~~~~~p~~~~~~~~~~~y~il~k~l~~~~ 210 (226)
++.|-.|+|.++|..| |+++| +|- ..|..-+.--..+|-++.+..|-....+..+...+|=.|.-.++-
T Consensus 329 ~D~RdyGlGAQILrdL-------GV~Km~RLL--TNnp~K~~gL~GfGLEVVErVpl~~~~~p~d~~vei~ak~~agy~ 398 (418)
T PRK07198 329 QDMRFQELMPDVLHWL-------GIRRIHRLV--SMSNMKYDAITGSGIEVGERVPIPDELIPADARVEIDAKKAAGYF 398 (418)
T ss_pred CcceehhHHHHHHHHh-------CCChhhhhc--CCCHHHHHHHHhCCCEEEEEeccCcCCCccccccchhhhhhcccc
Confidence 4789999999988865 88888 554 345544455578899988887654433455555666666544433
No 193
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.28 E-value=1.9e+02 Score=24.00 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=25.6
Q ss_pred HhCCCcEEEEEE---cCCCHHHHHHHHHCCCeeecc
Q psy837 153 FKNNMSKVVLTT---FKHNPDGLNFFYSLNYSVDDT 185 (226)
Q Consensus 153 ~~~g~~~i~l~v---~~~N~~A~~FY~k~GF~~~~~ 185 (226)
+..+.++|.+-+ ..-|.+-..|++++||++...
T Consensus 114 ~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~ 149 (238)
T COG3473 114 NALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDF 149 (238)
T ss_pred HhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEe
Confidence 446778877643 457889999999999998765
No 194
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=20.08 E-value=1.5e+02 Score=20.99 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=17.6
Q ss_pred cccCCHHHHHHHH--HHHHHHhCCCc
Q psy837 135 VQRKGLGKFMMQV--LELMAFKNNMS 158 (226)
Q Consensus 135 ~rgkGlG~~Lm~~--l~~~a~~~g~~ 158 (226)
..|.|+|+-+|-. ++++++++|+.
T Consensus 7 aCG~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 7 ACGNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred ECCCCccHHHHHHHHHHHHHHHcCCC
Confidence 3589999977544 67777777775
No 195
>PRK14968 putative methyltransferase; Provisional
Probab=20.03 E-value=2.4e+02 Score=21.54 Aligned_cols=45 Identities=7% Similarity=0.155 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCCcEEEEEEcCCCHHHHHHHHHCCCeeeccCCC
Q psy837 144 MMQVLELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPE 188 (226)
Q Consensus 144 Lm~~l~~~a~~~g~~~i~l~v~~~N~~A~~FY~k~GF~~~~~~p~ 188 (226)
+++.+....+..|.--+.......+.....+..+.||++......
T Consensus 130 ~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 130 FLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred HHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeec
Confidence 344444444444422122222334566778889999987765443
Done!