RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy837
(226 letters)
>gnl|CDD|216007 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This
family contains proteins with N-acetyltransferase
functions such as Elp3-related proteins.
Length = 80
Score = 44.2 bits (105), Expect = 2e-06
Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 106 TPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTF 165
V F+ D V L ++ + + KG+G +++ LE A + + ++ L
Sbjct: 6 ELVGFASLSII-DEEGNVAEIEGLAVDPEYRGKGIGTALLEALEEYARELGLKRIELEVL 64
Query: 166 KHNPDGLNFFYSLNY 180
+ N + + L +
Sbjct: 65 EDNEAAIALYEKLGF 79
>gnl|CDD|173926 cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes
that characteristically catalyze the transfer of an acyl
group to a substrate. NAT (N-Acyltransferase) is a
large superfamily of enzymes that mostly catalyze the
transfer of an acyl group to a substrate and are
implicated in a variety of functions, ranging from
bacterial antibiotic resistance to circadian rhythms in
mammals. Members include GCN5-related
N-Acetyltransferases (GNAT) such as Aminoglycoside
N-acetyltransferases, Histone N-acetyltransferase (HAT)
enzymes, and Serotonin N-acetyltransferase, which
catalyze the transfer of an acetyl group to a substrate.
The kinetic mechanism of most GNATs involves the ordered
formation of a ternary complex: the reaction begins with
Acetyl Coenzyme A (AcCoA) binding, followed by binding
of substrate, then direct transfer of the acetyl group
from AcCoA to the substrate, followed by product and
subsequent CoA release. Other family members include
Arginine/ornithine N-succinyltransferase, Myristoyl-CoA:
protein N-myristoyltransferase, and
Acyl-homoserinelactone synthase which have a similar
catalytic mechanism but differ in types of acyl groups
transferred. Leucyl/phenylalanyl-tRNA-protein
transferase and FemXAB nonribosomal peptidyltransferases
which catalyze similar peptidyltransferase reactions are
also included.
Length = 65
Score = 39.6 bits (93), Expect = 5e-05
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 96 YLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKN 155
+LVA++ V F+ D G Y +L + + + KG+G +++ E A +
Sbjct: 1 FLVAEDDG--EIVGFASLSPD-GSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARER 57
Query: 156 NMSKVVLT 163
++ L
Sbjct: 58 GAKRLRLE 65
>gnl|CDD|183178 PRK11525, dinD, DNA-damage-inducible protein D; Provisional.
Length = 279
Score = 28.9 bits (65), Expect = 1.9
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 94 ACYLVAKNGSSSTPV-AF 110
ACYL+ +NG PV AF
Sbjct: 87 ACYLIVQNGDPRKPVIAF 104
>gnl|CDD|237717 PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 356
Score = 28.8 bits (65), Expect = 2.1
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 17 VSEAHKVDNPLEP-FTVFKTFKKNGLDLVIEYKKSTDLDA 55
V E V P E F T KKNG++ I + TD+DA
Sbjct: 302 VPERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGTDIDA 341
>gnl|CDD|181193 PRK08006, PRK08006, replicative DNA helicase; Provisional.
Length = 471
Score = 28.8 bits (64), Expect = 2.9
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 72 SYEVCDIGWDPQGKHSEMFDDRA---CYLVAKNGSS 104
+ E+ D G+DPQG+ SE D A + +A++ ++
Sbjct: 139 ANEIADAGYDPQGRTSEDLLDLAESRVFQIAESRAN 174
>gnl|CDD|226466 COG3957, COG3957, Phosphoketolase [Carbohydrate transport and
metabolism].
Length = 793
Score = 28.5 bits (64), Expect = 3.6
Identities = 18/93 (19%), Positives = 27/93 (29%), Gaps = 16/93 (17%)
Query: 118 DFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGL----- 172
D + + E LG+F+ V+ K N + PD
Sbjct: 385 DLRDYAVEVSEPGAVTAESTTALGRFLRDVM-----KLNPDNFRVF----GPDETASNRL 435
Query: 173 -NFFYSLNYS-VDDTSPEDDNGSSESFCYFILS 203
+ T PEDD S + +LS
Sbjct: 436 GGVLKVTKRVWMAVTLPEDDFLSPDGRVMEVLS 468
>gnl|CDD|221780 pfam12804, NTP_transf_3, MobA-like NTP transferase domain. This
family includes the MobA protein (Molybdopterin-guanine
dinucleotide biosynthesis protein A). The family also
includes a wide range of other NTP transferase domain.
Length = 178
Score = 27.5 bits (62), Expect = 4.0
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 96 YLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYEL--QLEKQVQRKGLGKFMMQ 146
L+A +S +A +D G P+L+ L LE + +GL +
Sbjct: 105 RLLAALEASGADIAV--PVYDGGRGHPLLFPRSLLPALEALLGDRGLRSLLRA 155
>gnl|CDD|223532 COG0456, RimI, Acetyltransferases [General function prediction
only].
Length = 177
Score = 27.3 bits (60), Expect = 5.0
Identities = 22/148 (14%), Positives = 47/148 (31%), Gaps = 16/148 (10%)
Query: 43 LVIEYKKSTDLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNG 102
+ I + DL + LE + + W + ++ LVA+ G
Sbjct: 12 VTIREAINKDLLDV---ALAALEART--FDIRL---PWSREYFEKDLTQAPELLLVAETG 63
Query: 103 SSSTP-----VAFSHFRFDVDFGEPVLYCY--ELQLEKQVQRKGLGKFMMQVLELMAFKN 155
V F R + L ++ + + +G+G+ ++ +
Sbjct: 64 GLDGLLDGKVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRER 123
Query: 156 N-MSKVVLTTFKHNPDGLNFFYSLNYSV 182
K+VL + N + + L + V
Sbjct: 124 GLADKIVLEVRESNEAAIGLYRKLGFEV 151
>gnl|CDD|235142 PRK03624, PRK03624, putative acetyltransferase; Provisional.
Length = 140
Score = 27.2 bits (61), Expect = 5.0
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 127 YELQLEKQVQRKGLGKFMMQVLE--LMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDD 184
Y L + + +G+G+ ++ LE L+A K+ L + N L F+ +L Y D
Sbjct: 72 YYLAVHPDFRGRGIGRALVARLEKKLIA--RGCPKINLQVREDNDAVLGFYEALGYEEQD 129
Query: 185 T 185
Sbjct: 130 R 130
>gnl|CDD|181562 PRK08840, PRK08840, replicative DNA helicase; Provisional.
Length = 464
Score = 27.3 bits (60), Expect = 7.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 74 EVCDIGWDPQGKHSEMFDDRA 94
E+ D G+DPQG+ SE D A
Sbjct: 134 EIADAGYDPQGRTSEDLLDMA 154
>gnl|CDD|117424 pfam08857, ParBc_2, Putative ParB-like nuclease. This domain is
probably distantly related to pfam02195. Suggesting
these uncharacterized proteins have a nuclease function.
Length = 162
Score = 26.5 bits (59), Expect = 9.1
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 10/63 (15%)
Query: 56 ETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDR----ACYLVAKNGSSSTPVAFS 111
+ WV +E+ + Y + P+ + DD A +L G P FS
Sbjct: 98 DNNGWVHPYDERGERRPYS--AL---PKSLG-GLEDDPYRSLAGFLRDAGGYKKDPTPFS 151
Query: 112 HFR 114
FR
Sbjct: 152 EFR 154
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.398
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,244,193
Number of extensions: 1023443
Number of successful extensions: 853
Number of sequences better than 10.0: 1
Number of HSP's gapped: 853
Number of HSP's successfully gapped: 20
Length of query: 226
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 133
Effective length of database: 6,812,680
Effective search space: 906086440
Effective search space used: 906086440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)