RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy837
(226 letters)
>d1u6ma_ d.108.1.1 (A:) Putative acetyltransferase EF0945
{Enterococcus faecalis [TaxId: 1351]}
Length = 189
Score = 40.8 bits (94), Expect = 4e-05
Identities = 14/162 (8%), Positives = 46/162 (28%), Gaps = 9/162 (5%)
Query: 29 PFTVFKTFKKNGLDLVIEYKKSTDLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSE 88
+ + + + ++ + + + E V D +
Sbjct: 26 ELPILEEVSEEQMIDLLAEATAYPTYRYGYQRILVYEHAGEVAGIAVGYPAEDEKIIDEP 85
Query: 89 MFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVL 148
+ + + +A++ + + Y + ++++ + G+G ++ L
Sbjct: 86 LREVFKKHGLAEDVR---------LFIEEETLPNEWYLDTISVDERFRGMGIGSKLLDAL 136
Query: 149 ELMAFKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDD 190
+A + + L NP + S + T
Sbjct: 137 PEVAKASGKQALGLNVDFDNPGARKLYASKGFKDVTTMTISG 178
>d1vkca_ d.108.1.1 (A:) Putative acetyltransferase PF0028
{Pyrococcus furiosus [TaxId: 2261]}
Length = 149
Score = 37.8 bits (87), Expect = 2e-04
Identities = 19/128 (14%), Positives = 47/128 (36%), Gaps = 7/128 (5%)
Query: 61 VWELEEKNMKHSYEVCDIGWDPQGKHSEMFD------DRACYLVAKNGSSSTPVAFSHFR 114
+ +L+ + + + +H E+F+ + ++ S +
Sbjct: 14 IKKLDREISYSFVRFPISYEEYEERHEELFESLLSQGEHKFFVALNERSELLGHVWICIT 73
Query: 115 FDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHNPDGLNF 174
D + Y Y++++ K + G+G +++ E A + K+VL NP + +
Sbjct: 74 LDTVDYVKIAYIYDIEVVKWARGLGIGSALLRKAEEWAKERGAKKIVLRVEIDNP-AVKW 132
Query: 175 FYSLNYSV 182
+ Y
Sbjct: 133 YEERGYKA 140
>d1tiqa_ d.108.1.1 (A:) Protease synthase and sporulation negative
regulatory protein PaiA {Bacillus subtilis [TaxId:
1423]}
Length = 173
Score = 36.4 bits (83), Expect = 0.001
Identities = 20/173 (11%), Positives = 59/173 (34%), Gaps = 17/173 (9%)
Query: 45 IEYKKSTDLDAETKKWVWELEEKNMKHSY----------EVCDIGWDPQGKHSEMFDDRA 94
++ KK + D +T + +L + ++ + ++ + E+ + +
Sbjct: 2 VKMKKCSREDLQT---LQQLSIETFNDTFKEQNSPENMKAYLESAFNTEQLEKELSNMSS 58
Query: 95 CYLVAKNGS--SSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMA 152
+ + + G L + ++ Q+ GLGK ++ +A
Sbjct: 59 QFFFIYFDHEIAGYVKVNIDDAQSEEMGAESLEIERIYIKNSFQKHGLGKHLLNKAIEIA 118
Query: 153 FKNNMSKVVLTTFKHNPDGLNFFYSLNYSVDDTSPEDDNGSSESFCYFILSKK 205
+ N + L ++ N + + F+ + + ++ I++K
Sbjct: 119 LERNKKNIWLGVWEKNENAIAFYKKMGFVQTGAHSFYMGDEEQTD--LIMAKT 169
>d1p0ha_ d.108.1.1 (A:) Mycothiol synthase MshD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 308
Score = 33.5 bits (75), Expect = 0.014
Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 14/110 (12%)
Query: 86 HSEMFDDRACYLVAKNGSSSTPVAFSHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMM 145
+ + G + F + D + Y L ++ QR+GLG+ +
Sbjct: 197 PDGLILAFGDSPRERPG---RLLGFHWTKVHPD-HPGLGEVYVLGVDPAAQRRGLGQMLT 252
Query: 146 QVLELMAFKN----------NMSKVVLTTFKHNPDGLNFFYSLNYSVDDT 185
+ + + V+L N + + SL ++
Sbjct: 253 SIGIVSLARRLGGRKTLDPAVEPAVLLYVESDNVAAVRTYQSLGFTTYSV 302
>d1n71a_ d.108.1.1 (A:) Aminoglycoside 6'-N-acetyltransferase
{Enterococcus faecium [TaxId: 1352]}
Length = 180
Score = 29.5 bits (65), Expect = 0.20
Identities = 15/117 (12%), Positives = 34/117 (29%), Gaps = 13/117 (11%)
Query: 61 VWELEEKNMKHSYEVCDI---------GWDPQGKHSEMFDDRACYLVAKNGSSSTPVAFS 111
+ E + N ++ D+ G + EM + + A +
Sbjct: 3 ISEFDRNNPVLKDQLSDLLRLTWPEEYGDSSAEEVEEMMNPERIAVAAVDQDE----LVG 58
Query: 112 HFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKNNMSKVVLTTFKHN 168
+G + L +E ++ +G ++ LE + L T +
Sbjct: 59 FIGAIPQYGITGWELHPLVVESSRRKNQIGTRLVNYLEKEVASRGGITIYLGTDDLD 115
>d2beia1 d.108.1.1 (A:3-169) Diamine acetyltransferase 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 27.8 bits (60), Expect = 0.70
Identities = 14/147 (9%), Positives = 47/147 (31%), Gaps = 12/147 (8%)
Query: 45 IEYKKSTDLDAETKKWVWELEEKNMKHSYEVCDIGWDPQGKHSEMFDDRACYLVAKNGSS 104
+ +++ + D + L + + + + ++ F D Y
Sbjct: 2 VRIREAKEGDCGD---ILRLIRELAEFEKLSDQVKISEEALRADGFGDNPFYHCLVAEIL 58
Query: 105 STPVAF---------SHFRFDVDFGEPVLYCYELQLEKQVQRKGLGKFMMQVLELMAFKN 155
P ++ + +Y ++ + + + +G+G +++ + +A
Sbjct: 59 PAPGKLLGPCVVGYGIYYFIYSTWKGRTIYLEDIYVMPEYRGQGIGSKIIKKVAEVALDK 118
Query: 156 NMSKVVLTTFKHNPDGLNFFYSLNYSV 182
S+ L N ++ + +L
Sbjct: 119 GCSQFRLAVLDWNQRAMDLYKALGAQD 145
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation
factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Length = 213
Score = 25.6 bits (55), Expect = 5.6
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 3 GKAERLAVAAAQKIVSEAHKVDNPL 27
G+ RLA ++ + + NP+
Sbjct: 15 GEGNRLAYEVVKEALENLGSLYNPI 39
>d1hdmb2 d.19.1.1 (B:3-87) Class II MHC beta chain, N-terminal
domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
Length = 85
Score = 24.1 bits (52), Expect = 6.7
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 182 VDDTSPEDDNGSSESFCYFILSKKNP 207
V+ T DD G+ + F Y I K+
Sbjct: 5 VESTCLLDDAGTPKDFTYCISFNKDL 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.398
Gapped
Lambda K H
0.267 0.0638 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 846,831
Number of extensions: 38753
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 12
Length of query: 226
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,281,736
Effective search space: 184569984
Effective search space used: 184569984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)