BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8370
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
pdb|2EX4|B Chain B, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
Length = 241
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 127/215 (59%), Gaps = 5/215 (2%)
Query: 33 YSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGI 92
YS+ Y+ +PPT+DGML GY IS +DI +S +FL + + G + LD GAGI
Sbjct: 31 YSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGI 90
Query: 93 GRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYD 152
GRI+K LL F ++D+++ + F+ QAK + ++ ++ + G+QDF PE + YD
Sbjct: 91 GRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDS--YD 148
Query: 153 VIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS-GVKNEYDDEDSSVVRSLP 211
VIWIQWV+ + D+ + +FL CK L NGII+IKDN+A GV DD DSSV R L
Sbjct: 149 VIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI--LDDVDSSVCRDLD 206
Query: 212 QFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
+ A L + E+ +P ++ +Y FAL+
Sbjct: 207 VVRRIICSAGLSLLAEERQENLPDEIYHVYSFALR 241
>pdb|1XTP|A Chain A, Structural Analysis Of Leishmania Major Lmaj004091aaa, A
Sam-dependent Methyltransferase Of The Duf858/pfam05891
Family
Length = 254
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 113/220 (51%), Gaps = 9/220 (4%)
Query: 27 DGNRSHYSEVTEYYSNVPPTIDGMLNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVL 86
D + Y + EY+ VP T+ G+L G + D+DI+ S F++SL G +R L
Sbjct: 44 DPEKGWYGKALEYWRTVPATVSGVLGGXDHVHDVDIEGSRNFIASLPGH-----GTSRAL 98
Query: 87 DVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPED 146
D GAGIGRI+K LL K + DLLE +E+AK E+ + P
Sbjct: 99 DCGAGIGRITKNLLTKLYATTDLLEPVKHXLEEAKRELAGXPVGKFILASXETATLPPN- 157
Query: 147 LNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSV 206
YD+I IQW +++ D D +KF C+Q L NG I K+N ++G + D EDSS+
Sbjct: 158 ---TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSL 214
Query: 207 VRSLPQFCLLFSKANLKCVKSEKVTGMPKSLFKIYMFALK 246
RS + LF+++ ++ VK P LF + +ALK
Sbjct: 215 TRSDIHYKRLFNESGVRVVKEAFQEEWPTDLFPLKXYALK 254
>pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From
Plasmodium Falciparum In Complex With Sam And Po4
Length = 266
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 96/206 (46%), Gaps = 17/206 (8%)
Query: 53 GYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQ 112
G + IS ++ + + LS + + S +VLD+G+G+G Y+ K+ ++
Sbjct: 32 GENYISSGGLEATKKILSDIELNENS-----KVLDIGSGLGGGCXYINEKYGAHTHGIDI 86
Query: 113 SSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFL 172
S + A E + + + + ++ ++F PE+ +D+I+ + ++ + E+ K
Sbjct: 87 CSNIVNXANERVSGNNKIIFEANDILTKEF-PEN---NFDLIYSRDAILHLSLENKNKLF 142
Query: 173 NLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVR-------SLPQFCLLFSKANLKCV 225
C + L G ++I D A+ +N +DDE V+ ++ ++ + + N K V
Sbjct: 143 QKCYKWLKPTGTLLITDYCATEKEN-WDDEFKEYVKQRKYTLITVEEYADILTACNFKNV 201
Query: 226 KSEKVTGMPKSLFKIYMFALKPNKDK 251
S+ ++ L ++ L NK++
Sbjct: 202 VSKDLSDYWNQLLEVEHKYLHENKEE 227
>pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ7|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ8|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sinefungin And Po4
pdb|3UJ9|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphocholine
pdb|3UJA|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphoethanolamine
pdb|3UJB|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|3UJB|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|4FGZ|A Chain A, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
pdb|4FGZ|B Chain B, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
Length = 266
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 96/206 (46%), Gaps = 17/206 (8%)
Query: 53 GYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQ 112
G + IS ++ + + LS + + S +VLD+G+G+G Y+ K+ ++
Sbjct: 32 GENYISSGGLEATKKILSDIELNENS-----KVLDIGSGLGGGCMYINEKYGAHTHGIDI 86
Query: 113 SSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFL 172
S + A E + + + + ++ ++F PE+ +D+I+ + ++ + E+ K
Sbjct: 87 CSNIVNMANERVSGNNKIIFEANDILTKEF-PEN---NFDLIYSRDAILHLSLENKNKLF 142
Query: 173 NLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVR-------SLPQFCLLFSKANLKCV 225
C + L G ++I D A+ +N +DDE V+ ++ ++ + + N K V
Sbjct: 143 QKCYKWLKPTGTLLITDYCATEKEN-WDDEFKEYVKQRKYTLITVEEYADILTACNFKNV 201
Query: 226 KSEKVTGMPKSLFKIYMFALKPNKDK 251
S+ ++ L ++ L NK++
Sbjct: 202 VSKDLSDYWNQLLEVEHKYLHENKEE 227
>pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 96/206 (46%), Gaps = 17/206 (8%)
Query: 53 GYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQ 112
G + IS ++ + + LS + + S +VLD+G+G+G Y+ K+ ++
Sbjct: 32 GENYISSGGLEATKKILSDIELNENS-----KVLDIGSGLGGGCMYINEKYGAHTHGIDI 86
Query: 113 SSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFL 172
S + A E + + + + ++ ++F PE+ +D+I+ + ++ + E+ K
Sbjct: 87 CSNIVNMANERVSGNNKIIFEANDILTKEF-PEN---NFDLIYSRDAILHLSLENKNKLF 142
Query: 173 NLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVR-------SLPQFCLLFSKANLKCV 225
C + L G ++I D A+ +N +DDE V+ ++ ++ + + N K V
Sbjct: 143 QKCYKWLKPTGTLLITDYCATEKEN-WDDEFKEYVKQRKYTLITVEEYADILTACNFKNV 201
Query: 226 KSEKVTGMPKSLFKIYMFALKPNKDK 251
S+ ++ L ++ L NK++
Sbjct: 202 VSKDLSDYWNQLLEVEHKYLHENKEE 227
>pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 96/206 (46%), Gaps = 17/206 (8%)
Query: 53 GYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQ 112
G + IS ++ + + LS + + S +VLD+G+G+G Y+ K+ ++
Sbjct: 32 GENYISSGGLEATKKILSDIELNENS-----KVLDIGSGLGGGCMYINEKYGAHTHGIDI 86
Query: 113 SSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFL 172
S + A E + + + + ++ ++F PE+ +D+I+ + ++ + E+ K
Sbjct: 87 CSNIVNMANERVSGNNKIIFEANDILTKEF-PEN---NFDLIYSRDAILALSLENKNKLF 142
Query: 173 NLCKQILNKNGIIIIKDNVASGVKNEYDDEDSSVVR-------SLPQFCLLFSKANLKCV 225
C + L G ++I D A+ +N +DDE V+ ++ ++ + + N K V
Sbjct: 143 QKCYKWLKPTGTLLITDYCATEKEN-WDDEFKEYVKQRKYTLITVEEYADILTACNFKNV 201
Query: 226 KSEKVTGMPKSLFKIYMFALKPNKDK 251
S+ ++ L ++ L NK++
Sbjct: 202 VSKDLSDYWNQLLEVEHKYLHENKEE 227
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 140
G T ++DVG G G ++ ++AK+ S I +++D ++G
Sbjct: 203 GLTTIVDVGGGTGAVASMIVAKY--------PSINAINFDLPHVIQDAPAFSGVEHLGGD 254
Query: 141 DFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191
F D K D I+I+W+ DE +K L C L +G +I+ + +
Sbjct: 255 MF---DGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI 302
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 85 VLDVGAGIGRI--SKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDF 142
VLDVG G G + + L A H + L+E + E+A+ D D+ F
Sbjct: 186 VLDVGGGNGGMLAAIALRAPHL-RGTLVELAGP-AERARRRF-ADAGLADRVTVAEGDFF 242
Query: 143 KPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191
KP L + DV+ + +VL+ DED + L C + L G +++ D
Sbjct: 243 KP--LPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA 289
>pdb|4DQ0|A Chain A, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|B Chain B, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|C Chain C, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|D Chain D, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
Length = 200
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 139
PGKT LD+G G GR S YL A +D +D ++++ I A E +K + LD + +
Sbjct: 34 PGKT--LDLGCGNGRNSLYLAANGYD-VDAWDKNAMSI--ANVERIKSIENLDNLH-TRV 87
Query: 140 QDFKPEDLNIKYDVIWIQWVLMFI 163
D + +YD I VLMF+
Sbjct: 88 VDLNNLTFDGEYDFILSTVVLMFL 111
>pdb|2XVA|A Chain A, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|B Chain B, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|C Chain C, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|D Chain D, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVM|A Chain A, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sah
pdb|2XVM|B Chain B, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sah
Length = 199
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 139
PGKT LD+G G GR S YL A +D +D ++++ I A E +K + LD + +
Sbjct: 33 PGKT--LDLGCGNGRNSLYLAANGYD-VDAWDKNAMSI--ANVERIKSIENLDNLH-TRV 86
Query: 140 QDFKPEDLNIKYDVIWIQWVLMFI 163
D + +YD I VLMF+
Sbjct: 87 VDLNNLTFDRQYDFILSTVVLMFL 110
>pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei .
pdb|3DTN|B Chain B, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei
Length = 234
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 85 VLDVGAGIGRISKYLLAKHFDK-IDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ--- 140
+LD+GAG G +S +L+ K+ + L++ S K +E AK N+ ++
Sbjct: 48 ILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG---------NLKVKYIE 98
Query: 141 -DFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191
D+ D KYD++ + + DED + IL ++GI I D V
Sbjct: 99 ADYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLV 150
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 140
G ++DVG G G + +++K+ + K I +++D +VG
Sbjct: 200 GLKSLVDVGGGTGAVINTIVSKY--------PTIKGINFDLPHVIEDAPSYPGVEHVGGD 251
Query: 141 DFKPEDLNI-KYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189
F ++I K D ++++W+ DE +KFL C + L NG +I+ +
Sbjct: 252 MF----VSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAE 297
>pdb|3E23|A Chain A, Crystal Structure Of The Rpa2492 Protein In Complex With
Sam From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr299
Length = 211
Score = 33.9 bits (76), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 10/106 (9%)
Query: 80 PGKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGI 139
P ++L++G G G ++ LA FD +D + S + +A + + V
Sbjct: 42 PAGAKILELGCGAGYQAEAXLAAGFD-VDATDGSPELAAEASRRLGR---------PVRT 91
Query: 140 QDFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGII 185
F D YD +W L+ + +++ L L + L G+
Sbjct: 92 XLFHQLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLF 137
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 27/137 (19%)
Query: 81 GKTRVLDVGAGIGR-----ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY 135
G + ++DVG G GR ISKY L K + DL +++++ L
Sbjct: 209 GISTLVDVGGGSGRNLELIISKYPLIKGIN-FDL------------PQVIENAPPLSGIE 255
Query: 136 NVGIQDFK--PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 193
+VG F P+ + + W DE I+FL+ C + L+ NG +II + +
Sbjct: 256 HVGGDMFASVPQGDAMILKAVCHNWS-----DEKCIEFLSNCHKALSPNGKVIIVEFILP 310
Query: 194 GVKNEYDDEDSSVVRSL 210
N E+S +V +L
Sbjct: 311 EEPN--TSEESKLVSTL 325
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 51 LNGYSSISDLDIQTSNQFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFD-KIDL 109
++GYS L + + L L P +VL+ G GIG + L + D +I
Sbjct: 7 VHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITS 66
Query: 110 LEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKPEDLNIKYDVIWIQWVLMFILD-EDI 168
++ S + +E+A+E K+ K K I ED + +D I++ +VL + E+
Sbjct: 67 IDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSS--FDHIFVCFVLEHLQSPEEA 124
Query: 169 IKFLNLCKQILNKNGIIII 187
+K L K++L G I +
Sbjct: 125 LKSL---KKVLKPGGTITV 140
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 27/137 (19%)
Query: 81 GKTRVLDVGAGIGR-----ISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCY 135
G + ++DVG G GR ISKY L K + DL +++++ L
Sbjct: 209 GISTLVDVGGGSGRNLELIISKYPLIKGIN-FDL------------PQVIENAPPLSGIE 255
Query: 136 NVGIQDFK--PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNVAS 193
+VG F P+ D ++ V DE I+FL+ C + L+ NG +II + +
Sbjct: 256 HVGGDXFASVPQG-----DAXILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP 310
Query: 194 GVKNEYDDEDSSVVRSL 210
N E+S +V +L
Sbjct: 311 EEPN--TSEESKLVSTL 325
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 142 FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191
FKP L + DV+ + +VL+ DED + L C + L G +++ D
Sbjct: 242 FKP--LPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA 289
>pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|B Chain B, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|C Chain C, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|D Chain D, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
Length = 297
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 82 KTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 141
+ + LD+GAG G +++L+ K ID L + ++ + E + L V
Sbjct: 83 QAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAP--VQNKRNEEYNNQAGLADNITVKYGS 140
Query: 142 FK--PEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKD 189
F P + N YD IW Q F+ D +K C ++L G+ I D
Sbjct: 141 FLEIPCEDN-SYDFIWSQ--DAFLHSPDKLKVFQECARVLKPRGVXAITD 187
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 61 DIQTSN-QFLSSLYCQKKSDPGKTRVLDVGAGIGRISKYLLAKHFDKID 108
+I SN +F L ++ G +++DVG GIG IS +L KHF ++D
Sbjct: 169 EIHRSNAKFAIQLLLEEAKLDGVKKMIDVGGGIGDISAAML-KHFPELD 216
>pdb|3HNR|A Chain A, Crystal Structure Of A Probable Methyltransferase
Bt9727_4108 From Bacillus Thuringiensis Subsp. Northeast
Structural Genomics Consortium Target Id Bur219
Length = 220
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 85 VLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQDFKP 144
VL+ G G G ++ LL L ++ IE ++E + +KL K +++ DF
Sbjct: 49 VLEFGVGTGNLTNKLL--------LAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLS 100
Query: 145 EDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIIIKDNV 191
++ D I + + D++ + Q+LNK G I+ D +
Sbjct: 101 FEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTI 147
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 84 RVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC 128
RVLD+G G G+ S +L + F+ + L++ S + +E A+E+ +K+
Sbjct: 57 RVLDLGGGTGKWSLFLQERGFEVV-LVDPSKEXLEVAREKGVKNV 100
>pdb|1IY8|A Chain A, Crystal Structure Of Levodione Reductase
pdb|1IY8|B Chain B, Crystal Structure Of Levodione Reductase
pdb|1IY8|C Chain C, Crystal Structure Of Levodione Reductase
pdb|1IY8|D Chain D, Crystal Structure Of Levodione Reductase
pdb|1IY8|E Chain E, Crystal Structure Of Levodione Reductase
pdb|1IY8|F Chain F, Crystal Structure Of Levodione Reductase
pdb|1IY8|G Chain G, Crystal Structure Of Levodione Reductase
pdb|1IY8|H Chain H, Crystal Structure Of Levodione Reductase
Length = 267
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 89 GAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDC 128
G+G+GR + LA K+ L++ SS+ +E +K +L+
Sbjct: 22 GSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA 61
>pdb|3M70|A Chain A, Crystal Structure Of Tehb From Haemophilus Influenzae
Length = 286
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
Query: 84 RVLDVGAGIGRISKYLLAKHFD--KIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQD 141
+VLD+G G GR S YL +D D E S F+ + KE K + + + D
Sbjct: 123 KVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKE-------KENLNISTALYD 175
Query: 142 FKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQILNKNGIIII 187
++ YD I V F+ E + + K+ N G +I
Sbjct: 176 INAANIQENYDFIVSTVVFXFLNRERVPSIIKNXKEHTNVGGYNLI 221
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 27/176 (15%)
Query: 81 GKTRVLDVGAGIGRISKYLLAKHFDKIDLLEQSSKFIEQAKEEILKDCDKLDKCYNVGIQ 140
G ++DVG G G +K ++ + F K+ K I + +++++ + VG
Sbjct: 188 GLESIVDVGGGTGTTAK-IICETFPKL-------KCIVFDRPQVVENLSGSNNLTYVGGD 239
Query: 141 DFKPEDLNIKYDVIWIQWVLMFILDEDIIKFLNLCKQIL---NKNGIIIIKDNVASGVKN 197
F D + ++++L D+D ++ L CK+ + K G + I D V K+
Sbjct: 240 XFTSIP---NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDKKKD 296
Query: 198 EYDDEDSSVVRSLPQFCL------------LFSKANLKCVKSEKVTGMPKSLFKIY 241
E ++ + CL LF +A + K +TG SL +IY
Sbjct: 297 ENQVTQIKLLXDVNXACLNGKERNEEEWKKLFIEAGFQHYKISPLTGF-LSLIEIY 351
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,588,919
Number of Sequences: 62578
Number of extensions: 317342
Number of successful extensions: 1420
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1397
Number of HSP's gapped (non-prelim): 41
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)